mirror of
https://git.savannah.gnu.org/git/guix.git
synced 2026-04-06 21:20:33 +02:00
gnu: instrain: Update to 1.10.0-0.6180be7.
* gnu/packages/bioinformatics.scm (instrain): Update to 6180be7b49a61b7e1ffe9f1489da5c6aa2ff9ac3 commit. [arguments]: Use G-Expressions. <phases>: Add 'relax-requirements. [native-inputs]: Remove python-boto3, python-pytest, and python-wheel. Change-Id: I5cf37e5128a962007aa9d4e8a8ffa3da474e7c6f
This commit is contained in:
@@ -20178,26 +20178,31 @@ set.")
|
||||
(define-public instrain
|
||||
(package
|
||||
(name "instrain")
|
||||
(version "1.9.0")
|
||||
;; Git repository does not tag releases, use the latest commit from master
|
||||
;; branch.
|
||||
(properties '((commit . "6180be7b49a61b7e1ffe9f1489da5c6aa2ff9ac3")
|
||||
(revision . "0")))
|
||||
(version (git-version "1.10.0"
|
||||
(assoc-ref properties 'revision)
|
||||
(assoc-ref properties 'commit)))
|
||||
(source
|
||||
(origin
|
||||
(method git-fetch)
|
||||
(uri (git-reference
|
||||
(url "https://github.com/MrOlm/instrain")
|
||||
;; There are no tags.
|
||||
(commit "168f3f777b45139a9f6099f68974105b45e2d8ba")))
|
||||
(url "https://github.com/MrOlm/instrain")
|
||||
(commit (assoc-ref properties 'commit))))
|
||||
(file-name (git-file-name name version))
|
||||
(sha256
|
||||
(base32
|
||||
"1wc69ggyiacm1slb678239lqmf1g5dlb4alwsbp14gi6393gj9fg"))))
|
||||
(base32 "1njsxjf3248121yw3q1ig6asf6b3wa5fgjfyc6dkgk6nd4ih8wni"))))
|
||||
(build-system pyproject-build-system)
|
||||
(arguments
|
||||
(list
|
||||
;; Tests assume that test files exist (they don't) and are located in
|
||||
;; the developer's home directory.
|
||||
;; the developer's home directory, see:
|
||||
;; <https://github.com/MrOlm/inStrain/issues/218>.
|
||||
#:tests? #false
|
||||
#:phases
|
||||
'(modify-phases %standard-phases
|
||||
#~(modify-phases %standard-phases
|
||||
(add-after 'unpack 'patch-relative-imports
|
||||
(lambda _
|
||||
(substitute* (find-files "test/tests" "test_.*\\.py")
|
||||
@@ -20208,7 +20213,11 @@ set.")
|
||||
(("from s3_utils")
|
||||
"from .s3_utils")
|
||||
(("from job_utils")
|
||||
"from .job_utils")))))))
|
||||
"from .job_utils"))))
|
||||
(add-after 'unpack 'relax-requirements
|
||||
(lambda _
|
||||
(substitute* "setup.py"
|
||||
((".*pytest.*") "")))))))
|
||||
(propagated-inputs
|
||||
(list python-biopython-1.73
|
||||
python-h5py
|
||||
@@ -20222,10 +20231,7 @@ set.")
|
||||
python-seaborn
|
||||
python-tqdm))
|
||||
(native-inputs
|
||||
(list python-boto3
|
||||
python-pytest
|
||||
python-setuptools
|
||||
python-wheel))
|
||||
(list python-setuptools))
|
||||
(home-page "https://github.com/MrOlm/inStrain")
|
||||
(synopsis "Calculation of strain-level metrics")
|
||||
(description
|
||||
|
||||
Reference in New Issue
Block a user