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gnu: python-pytensor: Update to 2.36.3.
* gnu/packages/python-science.scm (python-pytensor): Update to 2.36.3. [arguments] <test-flags>: Add option to skip/disable benchmark tests and rework skipped tests. [native-inputs]: Add python-pytest-benchmark and python-pytest-xdist. Change-Id: I9c3c42c21091524741ccef55e4698b59e818512d Signed-off-by: Rutherther <rutherther@ditigal.xyz>
This commit is contained in:
Sharlatan Hellseher
committed by
Rutherther
Rutherther
parent
1bbcad4a91
commit
60b2a82ea1
@@ -4976,7 +4976,7 @@ objects.")
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(define-public python-pytensor
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(package
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(name "python-pytensor")
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(version "2.28.3") ; the minimal version supporting SciPy 1.12.0
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(version "2.36.3")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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@@ -4985,11 +4985,11 @@ objects.")
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1yz1yslms6kdmy4sgnvbnghhclcpkc80z3vaw9c2y3b3j1fs9b4v"))))
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"0m9nmwnn0ixrk9ml0yc6qjdcw0vmw7swfcw8vahyfmp70pirhimn"))))
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(build-system pyproject-build-system)
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(arguments
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(list
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;; tests: 1437 passed, 111 skipped, 11 deselected, 8 xfailed, 154 warnings
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;; tests: 1906 passed, 2581 skipped, 34 deselected, 12 xfailed, 274 warnings
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#:test-flags
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;; XXX: Full test suite takes about 20-30min to complete in single
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;; thread, attempt to run tests in parallel with pytest-xdist fails even
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@@ -4997,37 +4997,60 @@ objects.")
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;; improve it.
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;;
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;; Upstream implements a script, showing slow tests which may be used to
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;; exclude even more hanging/slow ones, see
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;; exclude even more hanging/slow ones, see:
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;; <scripts/slowest_tests/extract-slow-tests.py>.
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;;
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;; Skip computationally intensive tests.
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#~(list "--ignore" "tests/scan/"
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"--ignore" "tests/tensor/"
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"--ignore" "tests/sandbox/"
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"--ignore" "tests/sparse/sandbox/"
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;; Tests hang while running from these files.
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"--ignore" "tests/compile/test_compilelock.py"
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"--ignore" "tests/link/jax/test_tensor_basic.py"
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;; XXX: Tests finish with error in these files, check why.
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"--ignore" "tests/compile/function/test_types.py"
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"--ignore" "tests/link/numba/test_basic.py"
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"--ignore" "tests/link/numba/test_blockwise.py"
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"--ignore" "tests/link/numba/test_elemwise.py"
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;; XXX: Tests fail with AssertionError.
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"--ignore" "tests/graph/rewriting/"
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"--deselect" "tests/graph/test_destroyhandler.py::test_misc"
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"-k" (string-join
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;; Skip benchmark tests.
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(list "not test_elemwise_speed"
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"test_logsumexp_benchmark"
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"test_fused_elemwise_benchmark"
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"test_scan_multiple_output"
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"test_vector_taps_benchmark"
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"test_cython_performance"
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;; Assertion fails in tests.
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"test_choose_signature"
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"test_fgraph_to_python_names")
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" and not "))
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#~(list "--benchmark-disable"
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"--benchmark-skip"
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"--durations=50"
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;; Skip computationally intensive tests.
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"--ignore=tests/scan/"
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"--ignore=tests/tensor/"
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"--ignore=tests/sandbox/"
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"--ignore=tests/sparse/sandbox/"
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;; A mixture of assertions are not equal in these tests.
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"--deselect=tests/link/numba/test_nlinalg.py::test_Eigh[x0-L-None]"
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#$@(map (lambda (test)
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(string-append "--deselect=tests/graph/rewriting/"
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"test_basic.py::"
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test))
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;; Tests fail with similar errors: AssertionError:
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;; assert 'FunctionGraph(Op1(Op2(x, y), z))' ==
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;; 'FunctionGraph(Op4(z, y))'
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(list "TestPatternNodeRewriter::test_replace_output"
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"TestPatternNodeRewriter::test_nested_out_pattern"
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"TestPatternNodeRewriter::test_unification_1"
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"TestPatternNodeRewriter::test_replace_subgraph"
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"TestPatternNodeRewriter::test_no_recurse"
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"TestPatternNodeRewriter::test_multiple"
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"TestPatternNodeRewriter::test_nested_even"
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"TestPatternNodeRewriter::test_nested_odd"
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"TestPatternNodeRewriter::test_expand"
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"TestPatternNodeRewriter::test_ambiguous"
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"TestPatternNodeRewriter::test_constant"
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"TestPatternNodeRewriter::test_constraints"
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"TestPatternNodeRewriter::test_match_same"
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"TestPatternNodeRewriter::test_eq"
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"TestEquilibrium::test_1"
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"TestEquilibrium::test_2"
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"TestEquilibrium::test_low_use_ratio"
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;; A mixture of assertions are not equal:
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"TestPatternNodeRewriter::test_allow_multiple_clients"
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"TestPatternNodeRewriter::test_op_pattern"
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"test_patternsub_values_eq_approx[out_pattern0-True]"
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"test_patternsub_values_eq_approx[out_pattern0-False]"
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"test_patternsub_values_eq_approx[x-True]"
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"test_patternsub_values_eq_approx[x-False]"
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"test_patternsub_multi_output_nodes"))
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#$@(map (lambda (test)
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(string-append "--deselect=tests/graph/" test))
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(list "rewriting/test_kanren.py::test_kanren_basic"
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"rewriting/test_kanren.py::test_KanrenRelationSub_filters"
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"rewriting/test_kanren.py::test_KanrenRelationSub_dot"
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"rewriting/test_unify.py::test_unify_Variable"
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"rewriting/test_unify.py::test_ConstrainedVar"
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"rewriting/test_unify.py::test_unify_OpPattern"
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"test_destroyhandler.py::test_misc")))
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#:phases
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#~(modify-phases %standard-phases
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;; Replace version manually because pytensor uses
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@@ -5047,7 +5070,9 @@ objects.")
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(delete-file-recursively "pytensor"))))))
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(native-inputs (list python-cython
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python-pytest
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python-pytest-benchmark
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python-pytest-mock
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python-pytest-xdist
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python-versioneer
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python-setuptools))
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(propagated-inputs (list python-cons
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@@ -5055,11 +5080,13 @@ objects.")
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python-filelock
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python-logical-unification
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python-minikanren
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python-numba
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python-numpy
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python-scipy
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;; [optinal]
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;; python-jaxlib
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;; python-jax
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python-numba))
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#;python-llvmlite))
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(home-page "https://pytensor.readthedocs.io/en/latest/")
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(synopsis
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"Library for mathematical expressions in multi-dimensional arrays")
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