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gnu: Add r-kegggraph.

* gnu/packages/bioconductor.scm (r-kegggraph): New variable.
This commit is contained in:
Mădălin Ionel Patrașcu
2020-12-16 23:03:41 +01:00
committed by Ricardo Wurmus
parent eb2f1a7dd9
commit 7395458d40

View File

@@ -9213,3 +9213,29 @@ CATALYST (Cytometry dATa anALYSis Tools) to provide a pipeline for
preprocessing of cytometry data, including i) normalization using bead
standards, ii) single-cell deconvolution, and iii) bead-based compensation.")
(license license:gpl2+)))
(define-public r-kegggraph
(package
(name "r-kegggraph")
(version "1.50.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "KEGGgraph" version))
(sha256
(base32 "1h293hn02ysm923bh9gxk87xv663xiqchqcvpaxpla9c3yrgkx2v"))))
(properties `((upstream-name . "KEGGgraph")))
(build-system r-build-system)
(propagated-inputs
`(("r-graph" ,r-graph)
("r-rcurl" ,r-rcurl)
("r-xml" ,r-xml)))
(home-page "https://bioconductor.org/packages/KEGGgraph")
(synopsis "Graph approach to Kegg Pathway database in R and Bioconductor")
(description
"@code{r-kegggraph} is an interface between Kegg Pathway database and graph
object as well as a collection of tools to analyze, dissect and visualize these
graphs. It parses the regularly updated kgml (Kegg XML) files into graph models
maintaining all essential pathway attributes. The package offers
functionalities including parsing, graph operation, visualization and etc.")
(license license:gpl2+)))