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gnu: r-biocset: Replace custom phase with SKIPPED-TESTS argument.

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* gnu/packages/bioconductor.scm (r-biocset)[arguments]: Remove phase
'delete-bad-tests; specify #:skipped-tests instead.

Change-Id: Ibcdfdca6e35869e260a8f02deddacaa59002c7f1
This commit is contained in:
Ricardo Wurmus
2026-04-02 17:36:34 +02:00
parent 92c05d76c3
commit 7f6e420283
1 changed files with 13 additions and 8 deletions
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21
gnu/packages/bioconductor.scm
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@@ -25110,14 +25110,19 @@ analytics on packages.")
(build-system r-build-system) (build-system r-build-system)
(arguments (arguments
(list (list
#:phases #:skipped-tests
'(modify-phases %standard-phases ;; One test tries to connect to a website. ("'kegg_sets\\(\\)' works")
(add-after 'unpack 'delete-bad-tests '("test_mapping_set.R"
(lambda _ ("test_BiocSet-methods.R"
;; One test tries to connect to a website. ;; This test fails because "The `add` argument of `group_by()` was
(delete-file "tests/testthat/test_mapping_set.R") ;; deprecated in dplyr 1.0.0 and is now defunct."
;; One test fails with a sorting error. "'summarise.BiocSet\\(\\)' works"
(delete-file "tests/testthat/test_BiocSet-methods.R")))))) ;; Expected `es_elementset(es2)$element` to equal
;; `sort(es_elementset(es)$element)`.
"'arrange.BiocSet\\(\\)' works")
("test_tbl_elementset_base-class.R"
;; `set` must be size 1, not 52.
"'summarise.tbl_elementset_base\\(\\)' works"))))
(propagated-inputs (propagated-inputs
(list r-annotationdbi (list r-annotationdbi
r-biocio r-biocio