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gnu: python-pomegranate: Update to 1.1.0.

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* gnu/packages/python-xyz.scm (python-pomegranate): Update to 1.1.0.
[source]: Switch to git-fetch providing tests.
[arguments] <tests?, test-flags>: Enable them.
[propagated-inputs]: Remove python-joblib and python-pyyaml; add
python-apricot-select, python-scikit-learn, and python-pytorch.
[native-inputs]: Remove python-pandas and python-wheel; add
python-pytest.

Change-Id: Idf53aff2124c98fd7dc1172a31028a57347d2a4b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
This commit is contained in:
Sharlatan Hellseher
2026-01-02 23:56:39 +00:00
committed by Rutherther
parent e0ee924579
commit d4ebd06e80
1 changed files with 52 additions and 23 deletions
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gnu/packages/python-xyz.scm
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@@ -7459,34 +7459,63 @@ a certain expected condition.")
(define-public python-pomegranate
(package
(name "python-pomegranate")
(version "0.14.8")
(source (origin
(method url-fetch)
(uri (pypi-uri "pomegranate" version))
(sha256
(base32
"0gb9srkbxzlkjyfizvxkw5y0bvnfcyiaxapz0hrdaba8j096b5i2"))
(modules '((guix build utils)))
;; Delete generated Cython C files.
(snippet
'(for-each delete-file (find-files "." "\\.c$")))))
(version "1.1.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/jmschrei/pomegranate")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "0arx5wik4ywna7k7g5y3ggwz98fl1hgap0278pph3c77ap8afqd7"))))
(build-system pyproject-build-system)
(arguments
(list
;; XXX: Update to python@3.11 broke some python-nose functionality.
;; Tests are broken but the package itself is most likely fine.
#:tests? #f))
(propagated-inputs
(list python-joblib
python-networkx
python-numpy
python-pyyaml
python-scipy))
;; tests: 830 passed, 19 deselected, 529 warnings
#:test-flags
#~(list #$@(map (lambda (test) (string-append "--deselect="
"tests/distributions/"
test))
;; _pickle.UnpicklingError: Weights only load failed.
(list "test_bernoulli.py::test_serialization"
"test_categorical.py::test_serialization"
"test_exponential.py::test_serialization"
"test_gamma.py::test_serialization"
"test_independent_component.py::test_serialization"
"test_normal_diagonal.py::test_serialization"
"test_normal_full.py::test_serialization"
"test_poisson.py::test_serialization"
"test_student_t.py::test_serialization"
"test_uniform.py::test_serialization"
;; Arrays are not almost equal to 3 decimals
"test_categorical.py::test_sample"
"test_independent_component.py::test_sample"
"test_joint_categorical.py::test_sample"
"test_joint_categorical.py::test_sample"))
#$@(map (lambda (test) (string-append "--deselect="
"tests/"
test))
;; _pickle.UnpicklingError: Weights only load failed.
(list "test_bayes_classifier.py::test_serialization"
"test_gmm.py::test_serialization"
"test_kmeans.py::test_serialization"
;; Arrays are not almost equal to 3 decimals
"test_bayesian_network.py::test_sample"
"test_gmm.py::test_sample"
"test_markov_chain.py::test_sample"
"test_markov_chain.py::test_sample")))))
(native-inputs
(list python-cython
python-pandas
python-setuptools
python-wheel))
python-pytest
python-setuptools))
(propagated-inputs
(list python-apricot-select
python-networkx
python-numpy
python-scikit-learn
python-scipy
python-pytorch))
(home-page "https://pypi.python.org/pypi/pomegranate/")
(synopsis "Graphical models library for Python")
(description