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gnu: r-cner: Remove custom phases, enable all tests.
* gnu/packages/bioconductor.scm (r-cner)[arguments]: Remove phases 'disable-bad-tests and 'fix-gcc-14-strictness. Change-Id: I116538acce4dacad5550727dba14bb72bb8905f4
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@@ -26035,29 +26035,6 @@ decompression of raw bead-level data from the Illumina BeadArray platform.")
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(base32 "18ii60kxr3f1rsydj29ml49gjicnciq7ypvrm1dz2rv4app0bp5j"))))
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(properties
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'((upstream-name . "CNEr")))
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(arguments
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(list
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#:phases
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'(modify-phases %standard-phases
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(add-after 'unpack 'disable-bad-tests
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(lambda _
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;; These require Internet access to download data from UCSC.
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(delete-file "tests/testthat/test_Axt.R")
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(substitute* "tests/testthat/test_CNE.R"
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((".*test_CNE.*" m)
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(string-append m "skip('guix')\n")))))
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(add-before 'install 'fix-gcc-14-strictness
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(lambda _
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;; XXX FIXME: $HOME/.R/Makevars seems to be the only way to
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;; set custom CFLAGS for R?
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(setenv "HOME" (getcwd))
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(mkdir-p ".R")
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(with-directory-excursion ".R"
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(with-output-to-file "Makevars"
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(lambda _
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(display (string-append
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"CFLAGS=-g -O2"
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" -std=gnu11 \n"))))))))))
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(build-system r-build-system)
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(inputs (list zlib))
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(propagated-inputs
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