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mirror of https://git.savannah.gnu.org/git/guix.git synced 2026-04-06 21:20:33 +02:00

gnu: macs-3: Update to 3.0.4.

* gnu/packages/bioinformatics.scm (macs-3): Update to 3.0.4.
[arguments] <test-flags>: Skip one test.

Change-Id: I7bb990fbaa25bdb3a1f4047cc65a581ffdcd59f7
This commit is contained in:
Sharlatan Hellseher
2026-04-04 22:30:59 +01:00
parent ac4d55f2ac
commit f4fc7b44e0

View File

@@ -9904,29 +9904,39 @@ sequencing tag position and orientation.")
(define-public macs-3
(package
(name "macs")
(version "3.0.3")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/macs3-project/MACS")
(commit (string-append "v" version))
(recursive? #true)))
(file-name (git-file-name name version))
(sha256
(base32
"08hi0a2a0md9gfg7jc75wxv69rggv2yqfd1hyrg4mi5bhi712m0v"))))
(version "3.0.4")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/macs3-project/MACS")
(commit (string-append "v" version))
(recursive? #true)))
(file-name (git-file-name name version))
(sha256
(base32 "16cv6bvvppi0z69r5l357ai8x4jg61rx8xrvcapk1wz6mh9naf5s"))))
(build-system pyproject-build-system)
(arguments
(list
#:test-flags
;; AssertionError: np.float32(1.0) != np.float64(-1.0)
;; calculated step by step:
;; 6.559423e-18
;; expected:
;; -2.98155597e-18
#~(list (string-append "--deselect=test/test_SignalProcessing.py::"
"Test_maxima::test_implement_smooth_here"))))
(native-inputs
(list python-cython
python-pytest
python-setuptools
zlib))
(propagated-inputs
(list python-cykhash
python-hmmlearn
python-numpy
python-scikit-learn
python-scipy))
(native-inputs
(list python-cython
python-pytest
python-setuptools
zlib))
(home-page "https://github.com/macs3-project/MACS")
(synopsis "Model based analysis for ChIP-Seq data")
(description