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gnu: Remove fastx-toolkit.

* gnu/packages/bioinformatics.scm (fastx-toolkit): Delete variable.

Change-Id: Ie710da17d23a04cfaafc1de28b2dc6aae23ccfd4
This commit is contained in:
Andreas Enge
2026-03-18 18:27:32 +01:00
parent 1a00e3abf4
commit fbd7a68945

View File

@@ -8461,39 +8461,6 @@ reasonable amount of time and memory. For large alignments, FastTree is
100-1,000 times faster than PhyML 3.0 or RAxML 7.")
(license license:gpl2+)))
(define-public fastx-toolkit
(package
(name "fastx-toolkit")
(version "0.0.14")
(source (origin
(method url-fetch)
(uri
(string-append
"https://github.com/agordon/fastx_toolkit/releases/download/"
version "/fastx_toolkit-" version ".tar.bz2"))
(sha256
(base32
"01jqzw386873sr0pjp1wr4rn8fsga2vxs1qfmicvx1pjr72007wy"))))
(build-system gnu-build-system)
(inputs
(list libgtextutils))
(native-inputs
(list gcc-6 ;; doesn't build with later versions
pkg-config))
(home-page "http://hannonlab.cshl.edu/fastx_toolkit/")
(synopsis "Tools for FASTA/FASTQ file preprocessing")
(description
"The FASTX-Toolkit is a collection of command line tools for Short-Reads
FASTA/FASTQ files preprocessing.
Next-Generation sequencing machines usually produce FASTA or FASTQ files,
containing multiple short-reads sequences. The main processing of such
FASTA/FASTQ files is mapping the sequences to reference genomes. However, it
is sometimes more productive to preprocess the files before mapping the
sequences to the genome---manipulating the sequences to produce better mapping
results. The FASTX-Toolkit tools perform some of these preprocessing tasks.")
(license license:agpl3+)))
(define-public flash
(package
(name "flash")