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gnu: Remove fastx-toolkit.
* gnu/packages/bioinformatics.scm (fastx-toolkit): Delete variable. Change-Id: Ie710da17d23a04cfaafc1de28b2dc6aae23ccfd4
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@@ -8461,39 +8461,6 @@ reasonable amount of time and memory. For large alignments, FastTree is
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100-1,000 times faster than PhyML 3.0 or RAxML 7.")
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(license license:gpl2+)))
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(define-public fastx-toolkit
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(package
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(name "fastx-toolkit")
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(version "0.0.14")
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(source (origin
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(method url-fetch)
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(uri
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(string-append
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"https://github.com/agordon/fastx_toolkit/releases/download/"
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version "/fastx_toolkit-" version ".tar.bz2"))
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(sha256
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(base32
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"01jqzw386873sr0pjp1wr4rn8fsga2vxs1qfmicvx1pjr72007wy"))))
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(build-system gnu-build-system)
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(inputs
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(list libgtextutils))
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(native-inputs
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(list gcc-6 ;; doesn't build with later versions
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pkg-config))
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(home-page "http://hannonlab.cshl.edu/fastx_toolkit/")
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(synopsis "Tools for FASTA/FASTQ file preprocessing")
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(description
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"The FASTX-Toolkit is a collection of command line tools for Short-Reads
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FASTA/FASTQ files preprocessing.
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Next-Generation sequencing machines usually produce FASTA or FASTQ files,
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containing multiple short-reads sequences. The main processing of such
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FASTA/FASTQ files is mapping the sequences to reference genomes. However, it
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is sometimes more productive to preprocess the files before mapping the
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sequences to the genome---manipulating the sequences to produce better mapping
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results. The FASTX-Toolkit tools perform some of these preprocessing tasks.")
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(license license:agpl3+)))
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(define-public flash
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(package
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(name "flash")
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