tribes/guix
1
0
Fork 1
mirror of https://git.savannah.gnu.org/git/guix.git synced 2026-05-21 08:35:58 +02:00
Code Activity
180,545 Commits 75 Branches 40 Tags
175a8d86c931a9f520d0e7f94831a55c364a32fe
Commit Graph

180545 Commits

This Branch
This Branch
All Branches
Author SHA1 Message Date
Rutherther 175a8d86c9 guix-install.sh: Check if ~/.guix-profile exists properly. 
Currently the check only looks if ~/.guix-profile symlink exists.
That, however, is not sufficient. This file might be created prior to creation
of the first generation of user's profile.

So we should be checking that the profile does have the file we're looking for
- etc/profile. This is the same way how /etc/profile solves this on Guix System.

* etc/guix-install.sh (sys_create_init_profile): Properly check if
~/.guix-profile exists.

Change-Id: I1a650cb5b845ca96705361e332409c3b49000057
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
Merges: #5123
 2026-02-07 17:00:09 +01:00
jgart b7a291a3c7 gnu: trealla: Update to 2.90.0. 
* gnu/packages/prolog.scm (trealla): Update to 2.90.0.

Change-Id: Iff40dfff0bc47f2fbfe8c3f11412b528f13d5440
 2026-02-07 09:58:26 -06:00
Andreas Enge 79b90ada7a gnu: python-rtree: Update to 1.4.1. 
* gnu/packages/geo.scm (python-rtree): Update to 1.4.1.

Change-Id: Ia4ef71f518e3b8ab24a2bf8b74a1172b687b8552
 2026-02-07 16:53:09 +01:00
Andy Tai 0f291ac28e gnu: units: Update to 2.25. 
* gnu/packages/maths.scm (units): Update to 2.25.

Change-Id: I9439366f66ff4e9bc37ee6f64bdb0b24d9ffedd2
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2026-02-07 15:34:40 +01:00
Jake Forster fcbfc559b1 gnu: itk-snap: Improve reproducibility. 
* gnu/packages/image-processing.scm (itk-snap): Improve reproducibility.
[arguments]<#:phases>{make-reproducible}: Patch @CMAKE_HOST_SYSTEM@,
@CMAKE_HOST_SYSTEM_PROCESSOR@.  Patch compile dates in c3d and greedy
submodules.  Move to after 'prepare-submodules phase.
{prepare-submodules}: Copy instead of symlink c3d and greedy.

Change-Id: I491f2fad852dd9dc1233f8d7e1428380fdbe6b21
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2026-02-07 14:36:23 +01:00
Andreas Enge a5d3806bcf gnu: Remove python-librecaptcha. 
* gnu/packages/messaging.scm (python-librecaptcha): Delete variable.

Fixes: guix/guix#5385
Change-Id: If7dfd2ca2fe47670911d7551a7c68db22b601215
 2026-02-07 14:28:00 +01:00
Andreas Enge f40de94c7c gnu: Remove python-harmony. 
* gnu/packages/messaging.scm (python-harmony): Delete variable.

Fixes: guix/guix#5386
Change-Id: I057f05e4a6c08ae86245929ead483d2a2fa2dbbe
 2026-02-07 14:27:35 +01:00
Andreas Enge eba1d0d5ca gnu: Remove python-slurm-magic. 
* gnu/packages/parallel.scm (python-slurm-magic): Delete variable.

Fixes: guix/guix#5298
Change-Id: I6ed4512114551d63ce46b8d91b3b38523ecaee65
 2026-02-07 14:20:32 +01:00
Andreas Enge 0f17bb44a3 gnu: Remove python-biofluff. 
* gnu/packages/bioinformatics.scm (python-biofluff): Delete variable.

Fixes: guix/guix#5249
Change-Id: I01a3672be5d344aba4e14f280350d27b910c9e61
 2026-02-07 14:19:39 +01:00
Andreas Enge 22ec49e10d gnu: Remove syncthing-gtk. 
* gnu/packages/syncthing.scm (syncthing-gtk): Delete variable.

Fixes: guix/guix#3468
Change-Id: Ia60404a9c4037c1e9efb98f4d6c44515e6f231fa
 2026-02-07 14:16:51 +01:00
Andreas Enge 86acfa0b94 gnu: Remove qsyncthingtray. 
* gnu/packages/syncthing.scm (qsyncthingtray): Delete variable.

Change-Id: I67b5f674bd04624d18aaa842c811282cabc1f462
 2026-02-07 14:16:22 +01:00
Olivier Dion 83b255409e gnu: liburcu: Update to 0.15.6. 
* gnu/packages/datastructures.scm (liburcu): Update to 0.15.6.

Change-Id: Ie8e6307137d80ec29925c57ba70070b8a39d3822
Signed-off-by: Andreas Enge <andreas@enge.fr>
 2026-02-07 14:08:52 +01:00
Sharlatan Hellseher f1f049817b gnu: thefuck: Use python-pytest-8. 
* gnu/packages/admin.scm (thefuck):[native-inputs]: Remove
python-pytest; add python-pytest-8.

Change-Id: I532c1973c289501219c5f40ebda2f2c9d27fc20c
 2026-02-07 12:28:59 +01:00
Sharlatan Hellseher d83410ba4c gnu: Remove scons-python2. 
* gnu/packages/build-tools.scm (scons-python2): Delete variable.

Change-Id: Ie58a8d433de6196547ffc69a6d0d602789d1fb65
 2026-02-07 12:28:59 +01:00
Sharlatan Hellseher 0c6eb59fa2 gnu: redeal: Disable missing tests. 
* gnu/packages/games.scm (redeal):[arguments] <test-flags>: No tests
provided.

Change-Id: I564f131a34e01bef441be01f20ff87d00892141f
 2026-02-07 12:28:59 +01:00
Sharlatan Hellseher b2ffb0bfe5 gnu: scvelo: Relocate phase 'set-numba-cache-dir. 
* gnu/packages/bioinformatics.scm (scvelo): [arguments]<#:phases>:
Relocate phase 'set-home.

Relates-to: guix/guix#5892
Change-Id: Ia51609df06d64d41b7a272d0e17e96cf973df2f8
 2026-02-07 12:28:59 +01:00
Sharlatan Hellseher bc70d27edc gnu: python-ikarus: Update to 0.0.3. 
* gnu/packages/bioinformatics.scm (python-ikarus): Update to 0.0.3. Use
G-Expressions.
[arguments] <test-backend, test-flags>: Use custom.
<phases>: Remove 'fix-issue-12; reallocate 'set-numba-cache-dir.
[native-inputs]: Remove python-wheel.

Change-Id: I4bf1b5bbda56373fd632f31aca59d473ab37252a
 2026-02-07 12:28:59 +01:00
Sharlatan Hellseher 189b7542de gnu: python-lenstronomy: Skip one test. 
* gnu/packages/astronomy.scm (python-lenstronomy)[arguments]
<test-flags>: Skip one more test.

Change-Id: I8c17b7750edde002bd4340eb2475ab3d8c795370
 2026-02-07 12:28:58 +01:00
Sharlatan Hellseher 9a26c21a54 gnu: python-django-rq: Update to 3.2.2. 
* gnu/packages/django.scm (python-django-rq): Update to 3.2.2.
[source]: Switch to git-fetch.
[arguments] <test-flags>: Drop all.
<phases>: Remove 'pre-check; add 'start-redis.
[native-inputs]: Remove python-setuptools and python-wheel; add
python-hatchling.

Change-Id: I438d07f2bfda42e9dff9f4c1269106c6be68e766
 2026-02-07 12:28:58 +01:00
Sharlatan Hellseher 66ec92b2c3 gnu: python-rq-scheduler: Improve package, fix tests. 
* gnu/packages/databases.scm (python-rq-scheduler): Reallocate some
fields, fix the style and readability.
[source] <url>: Use exact git URL instead of [home-page].
[arguments] <test-flags>: Skip tests requiring root access.
[propagated-inputs]: Remove python-croniter; add python-crontab,
python-freezegun, and python-dateutil.
[native-inputs]: Remove python-crontab, python-freezegun, and python-wheel.
[home-page]: Move above [synopsis].

Change-Id: If82959e5cb028b826a5a53293b3c58aefb507f36
 2026-02-07 12:28:58 +01:00
Sharlatan Hellseher 7d6c683bc4 gnu: python-crontab: Update to 3.3.0. 
* gnu/packages/python-xyz.scm (python-crontab): Update to 3.3.0.
[source] <pypi-uri>: Fix the name.
[native-inputs]: Remove python-wheel.

Change-Id: Ic5ea74269d289ec1d9e6a9132a25bc57a907406c
 2026-02-07 12:28:58 +01:00
Sharlatan Hellseher c6614e132f gnu: python-rq: Update to 2.6.1. 
* gnu/packages/databases.scm (python-rq): Update to 2.6.1.
[propagated-inputs]: Add python-croniter.

Change-Id: Iab464919a5a336ef8e7377a6ee99d0a867f320f4
 2026-02-07 12:28:58 +01:00
Sharlatan Hellseher eb42987949 gnu: python-celltypist: Update to 1.7.1. 
* gnu/packages/bioinformatics.scm (python-celltypist): Update to 1.7.1.
[arguments] <tests?>: Enable simple runtime regression check.
<phases>: Remove 'set-home and 'set-numba-cache-dir; add
'set-environment; use custom 'check phase.
[native-inputs]: Remove python-wheel; add python-setuptools.

Change-Id: I7ec16da8c6d3af8ad0d8eb96d5f9b50d9858eae3
 2026-02-07 12:28:58 +01:00
Sharlatan Hellseher e012430a92 gnu: python-argostranslate: Fix build. 
* gnu/packages/machine-learning.scm (python-argostranslate)
  [phases]{writable-home}: Remove phase.
  {set-home-env}: New phase, located before {build}.

Relates-to: guix/guix#5892
Change-Id: I04fdb2fa6793d3e3e1da906612f4b650238f2b1d
 2026-02-07 12:28:58 +01:00
Nicolas Graves 56a1951da0 gnu: python-scitools-iris: Update to 3.14.1. 
* gnu/packages/geo.scm (python-scitools-iris): Update to 3.14.1.
[arguments]<#:test-flags>: Refresh them.
<#:phases>: Remove phase 'relax-requirements.  Refresh phase
'fix-paths.  Replace phase 'pre-check addition by the phase 'check
replacement.
[native-inputs]: Add python-affine, python-rasterio,
python-scitools-mo-pack.

Change-Id: Ie2fef55d61266758106c3797217da72927279c90
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:58 +01:00
Nicolas Graves 78af90c974 gnu: Add iris-test-data. 
* gnu/packages/geo.scm (iris-test-data): New variable.

Change-Id: Ib9a0b1d09a06d9372272fd7d0c7862533d7b4b84
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:58 +01:00
Nicolas Graves 215cdb12d0 gnu: Add python-scitools-mo-pack. 
* gnu/packages/geo.scm (python-scitools-mo-pack): New variable.

Change-Id: I3a03acd4fbbccc69a72373c7e34e6d23f7fd9426
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:58 +01:00
Nicolas Graves 79cffdc00f gnu: Add libmo-unpack. 
* gnu/packages/geo.scm (libmo-unpack): New variable.

Change-Id: I7f157a0949e4022b7ad20635119e906ab005fb0f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:58 +01:00
Nicolas Graves 9999f19742 gnu: python-scikit-surprise: Relocate phase 'set-home. 
* gnu/packages/python-science.scm (python-scikit-surprise)[arguments]
<#:phases>: Relocate phase 'set-home.

Change-Id: Id6e5993e167f1f61865fcfe31caba0bce2d5263a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Nicolas Graves 0f6bd9d642 gnu: python-robotframework-datadriver: Add python-xlrd native-input. 
* gnu/packages/python-xyz.scm (python-robotframework-datadriver)
[native-inputs]: Remove python-wheel.  Add python-xlrd.

Change-Id: I38db8263ffad28042306b24e00034be941a236ba
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Nicolas Graves 9c1378062d gnu: python-ratelimiter: Switch to pytest-8. 
* gnu/packages/python-xyz.scm (python-ratelimiter)[native-inputs]:
Replace python-pytest by python-pytest-8.

Change-Id: Ie10f3fbcd4cea932be317eb21624bcac8ca6fa10
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Nicolas Graves d568e0d1a7 gnu: python-ndcube: Relocate phase 'set-home-env. 
* gnu/packages/wxwidgets.scm (python-ndcube)[arguments]<#:phases>:
Relocate phase 'set-home-env.

Change-Id: I77bd29800f0c24cdbbff88251093e8c107eae6d4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Nicolas Graves fdece4569e gnu: python-woob: Relax requirements. 
* gnu/packages/python-web.scm (python-woob)[arguments]<#:phases>: Add
phase 'relax-requirements.

Change-Id: Ib178d637ef1658702099ecd1c0fca570128970ed
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Nicolas Graves 57379fbc44 gnu: python-wxpython: Relocate phase 'add-missing-.so. 
* gnu/packages/wxwidgets.scm (python-wxpython)[arguments]<#:phases>:
Relocate phase 'add-missing-.so.

Change-Id: I15fd0fdc49c5dbf35d06814663896bc09486c09e
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Sharlatan Hellseher 63b0317069 gnu: python-irispy-lmsal: Relocate phase 'set-home. 
* gnu/packages/astronomy.scm (python-irispy-lmsal):
[arguments]<#:phases>: Relocate phase 'set-home.

Relates-to: guix/guix#5892
Change-Id: I743634183b7d7a60d0d24bb28ee06a2709aa2d11
 2026-02-07 12:28:57 +01:00
Sharlatan Hellseher fc71e0b6ab gnu: python-rpy2: Use python-pytest-8. 
* gnu/packages/statistics.scm (python-rpy2):
  [native-inputs]: Remove python-pytest; add python-pytest-8.

Change-Id: I20c82c77c5589c5802e4d7f252bd24aeedec5d85
 2026-02-07 12:28:57 +01:00
Sharlatan Hellseher e8a0d060ac gnu: python-sphinxcontrib-programoutput: Skip 2 tests. 
* gnu/packages/sphinx.scm (python-sphinxcontrib-programoutput):
  [phases]{cleanup}: Add step to disable 2 failing tests.

Change-Id: I7ed8c5912c4f0c7641ef05426980686c5cb5b1e3
 2026-02-07 12:28:57 +01:00
Sharlatan Hellseher 9f2c3165b8 gnu: python-abjad: Disable tests. 
* gnu/packages/music.scm (python-abjad):
  [arguments] <tests?>: Disable for now.
  [native-inputs]: Remove python-pytest and python-wheel.

Change-Id: If28e3dcf6b245e165f35ccbb1c6efc2a535453f2
 2026-02-07 12:28:57 +01:00
Sharlatan Hellseher d7365ddbc3 gnu: python-uqbar: Update to 0.9.6. 
* gnu/packages/graphviz.scm (python-uqbar): Update to 0.9.6.
[arguments] <test-flags>: Skip one test.
[native-inputs]: Remove python-wheel.

Change-Id: I7e317fa2e66c557ae7fbca67ad87bee4722a9d9e
 2026-02-07 12:28:57 +01:00
Nicolas Graves f0507e1031 gnu: quodlibet: Fix tests by ignoring most problematic ones. 
* gnu/packages/music.scm (quodlibet):
  [arguments]<#:test-flags>: Ignore test files with most failing tests.
  <#:phases>: Reallocate 'pre-check; use default 'check; add 'prepare-x.
  [native-inputs]: Remove xvfb-run; add xorg-server-for-tests.

Change-Id: I3349a249a4d25c916f80c306cccc7ca715e7cf73
Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Nicolas Graves f219efde32 gnu: rapid-photo-downloader: Update to 0.9.37a5. 
* gnu/packages/photo.scm (rapid-photo-downloader): Update to 0.9.37a5.
[native-inputs]: Replace python-setuptools by python-hatchling,
python-hatch-argparse-manpage, python-hatch-gettext.
[propagated-inputs]: Add python-pillow.

Change-Id: I38a87f28a25f3fbb8447a6d6a2ece5ef02dd85c0
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Nicolas Graves bf2a7027d1 gnu: rednotebook: Relocate phase 'set-HOME. 
* gnu/packages/rednotebook.scm (rednotebook)[arguments]<#:phases>:
Relocate phase 'set-HOME.

Change-Id: I266d066f93d158c33aeafd5cdf9aa8002d02678a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Nicolas Graves 200ffe6497 gnu: snakemake: Update to 8.30.0. 
* gnu/packages/python-science.scm (snakemake): Update to 8.30.0.
[arguments]<#:test-flags>: Refresh them.
[native-inputs]: Remove python-wheel.

Change-Id: I5b509cdf177224a71c313fed32f913cca85410d6
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Nicolas Graves ceed5daa2b gnu: python-snakemake-interface-storage-plugins: Update to 3.6.0. 
* gnu/packages/python-science.scm (python-snakemake-interface-storage-plugins): Update to 3.6.0.
[arguments]<#:phases>: Add phase 'relax-requirements.

Change-Id: I5e0028168d261ba12dbce846253ca4c8274710d7
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Nicolas Graves 98b269d0df gnu: python-legacy-api-wrap: Update to 1.5. 
* gnu/packages/python-xyz.scm (python-legacy-api-wrap): Update to 1.5.

Change-Id: Icc34334452c3ed556652a9c6412fbaa25f6c9e77
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Nicolas Graves eda5b7b016 gnu: twitchy: Relocate phase 'set-HOME. 
* gnu/packages/video.scm (twitchy)[arguments]<#:phases>: Relocate phase
'set-HOME.

Change-Id: Iebee41ed2d4431a40a24aed41b193a51bc1b75d0
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Nicolas Graves 67b5f86424 gnu: vorta: Relocate phase 'set-HOME. 
* gnu/packages/backup.scm (vorta)[arguments]<#:phases>: Relocate phase
'set-HOME.

Change-Id: Ief4c40b75e856b6e10df2069ef4bfa501ac5ec8c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Nicolas Graves f319ff5a54 gnu: wllvm: Update to 1.3.1-0.948cdb8. 
* gnu/packages/llvm.scm (wllvm): Update to 1.3.1-0.948cdb8.
[arguments]<#:test-flags>: Ignore failing test.
[native-inputs]: Add clang and procps.

Change-Id: I61ace17965efa739235b2cb8c5946cd64d12a987
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Nicolas Graves a0650005be gnu: xonsh: Ignore failing tests. 
* gnu/packages/shell.scm (xonsh)[arguments]<#:test-flags>: Ignore
tests that fail because of pip.

Change-Id: Ia02075b278aae3740cb67e3b849d748b1b20c9c5
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Sharlatan Hellseher d775596a8f gnu: python-scanpy: Skip one more test. 
* gnu/packages/bioinformatics.scm (python-scanpy):
  [arguments]<test-flags>: Skip one more shaky test.

Change-Id: I6093f2365fbab05ada6cc8cbdfede5bfdfb6f27d
 2026-02-07 12:28:56 +01:00