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Author SHA1 Message Date
Ricardo Wurmus
22c9b4e430 gnu: r-bbotk: Update to 1.8.1. 
* gnu/packages/cran.scm (r-bbotk): Update to 1.8.1.

Change-Id: I837fc0ebab2ea0b100b31a7f648f9337a5708677
 2025-11-29 12:21:38 +01:00
Ricardo Wurmus
dce9abc1f1 gnu: r-mlr3inferr: Update to 0.2.1. 
* gnu/packages/cran.scm (r-mlr3inferr): Update to 0.2.1.

Change-Id: I36634437b226c16720da487c934e1835a8858465
 2025-11-29 12:21:37 +01:00
Ricardo Wurmus
6051b6e737 gnu: r-mlr3fselect: Update to 1.5.0. 
* gnu/packages/cran.scm (r-mlr3fselect): Update to 1.5.0.

Change-Id: I7b71805aa9fe0fc9ac7bf3f80901a45f30b59045
 2025-11-29 12:21:37 +01:00
Ricardo Wurmus
36bfefc8db gnu: r-terra: Update to 1.8-86. 
* gnu/packages/cran.scm (r-terra): Update to 1.8-86.

Change-Id: I10b176bfab9f1b86131e3b3ca1fc254130daf8a6
 2025-11-29 12:21:37 +01:00
Ricardo Wurmus
1f3a3dd9fc gnu: r-lintr: Update to 3.3.0-1. 
* gnu/packages/cran.scm (r-lintr): Update to 3.3.0-1.
[propagated-inputs]: Add r-xfun.

Change-Id: I564c566a561084b8228565a7b1867f9adc4751f9
 2025-11-29 12:21:37 +01:00
Ricardo Wurmus
e3bae84b0b gnu: r-sfheaders: Update to 0.4.5. 
* gnu/packages/cran.scm (r-sfheaders): Update to 0.4.5.
[native-inputs]: Add r-shapes.

Change-Id: Ic2f829f40515691d20902b44dc133e0e00e8b989
 2025-11-29 12:21:37 +01:00
Ricardo Wurmus
efdaebc3cc gnu: r-sf: Update to 1.0-23. 
* gnu/packages/cran.scm (r-sf): Update to 1.0-23.
[native-inputs]: Add r-spatstat-geom.

Change-Id: I9b94ecc95ea5861471abe98281111d69f5138b9e
 2025-11-29 12:21:37 +01:00
Ricardo Wurmus
0392c1ba81 gnu: r-doc2vec: Update to 0.2.2. 
* gnu/packages/cran.scm (r-doc2vec): Update to 0.2.2.

Change-Id: I98095a1b9000c80a0e580a85ce83cf0da10972ce
 2025-11-29 12:21:37 +01:00
Ricardo Wurmus
4176953c94 gnu: r-word2vec: Update to 0.4.1. 
* gnu/packages/cran.scm (r-word2vec): Update to 0.4.1.

Change-Id: Id51d8e7945076b30b2bbe18cc04b350d1ea87932
 2025-11-29 12:21:37 +01:00
Ricardo Wurmus
0e41a338cb gnu: r-tsp: Update to 1.2.6. 
* gnu/packages/cran.scm (r-tsp): Update to 1.2.6.

Change-Id: I854578c2c71b75d1b21e47d4ebaec3335d676e6e
 2025-11-29 12:21:37 +01:00
Ricardo Wurmus
3749ffe16e gnu: r-geojsonsf: Update to 2.0.5. 
* gnu/packages/cran.scm (r-geojsonsf): Update to 2.0.5.

Change-Id: I6fd9f427c77de13e1d4618efba964c0f9b3d7837
 2025-11-29 12:21:36 +01:00
Ricardo Wurmus
059ef94cce gnu: r-gensa: Update to 1.1.15. 
* gnu/packages/cran.scm (r-gensa): Update to 1.1.15.

Change-Id: Ic292b26506718a06b7b21b1fcd77ac872d9b70ac
 2025-11-29 12:21:36 +01:00
Ricardo Wurmus
170b001457 gnu: r-jsonify: Update to 1.2.3. 
* gnu/packages/cran.scm (r-jsonify): Update to 1.2.3.
[properties]: Record updater-extra-native-inputs.
[native-inputs]: Remove r-knitr; add r-jsonlite.

Change-Id: I538a745e9f9ce55af7768402b6501e565adf178e
 2025-11-29 12:21:36 +01:00
Ricardo Wurmus
4f3cd77c1f gnu: r-spatstat-model: Update to 3.5-0. 
* gnu/packages/cran.scm (r-spatstat-model): Update to 3.5-0.
[native-inputs]: Remove r-random.

Change-Id: I296e4c8a2dc89901a9e653c4d131824342319426
 2025-11-29 12:21:36 +01:00
Ricardo Wurmus
5ad6d7a3ed gnu: r-ggtern: Update to 4.0.0. 
* gnu/packages/cran.scm (r-ggtern): Update to 4.0.0.

Change-Id: I067268938ac7de00609ea70955c9e370a10b6882
 2025-11-29 12:21:36 +01:00
Ricardo Wurmus
328d27e116 gnu: r-cytoexplorer: Skip tests using with_mock. 
* gnu/packages/bioinformatics.scm (r-cytoexplorer)[arguments]: Adjust phase
'skip-bad-tests.

Change-Id: I677fb4bdc709bd9ab463ab1e7c9c3c187ff76723
 2025-11-29 12:21:36 +01:00
Ricardo Wurmus
fd626f1972 gnu: r-operator-tools: Adjust for testthat compatibility. 
* gnu/packages/cran.scm (r-operator-tools)[arguments]: Add phase
'testthat-compatibility.

Change-Id: I6d25d3cf049a294f8da11a8fbcd159cc227ae0ab
 2025-11-29 12:21:36 +01:00
Ricardo Wurmus
7ef8abcf75 gnu: r-latex2exp: Skip bad test. 
* gnu/packages/cran.scm (r-latex2exp)[arguments]: Add phase 'disable-bad-test.

Change-Id: I8cd2d0428d3434866185f8d1f5e6cfc1f2e93981
 2025-11-29 12:21:36 +01:00
Ricardo Wurmus
c2b7144a80 gnu: r-mi: Add missing inputs and skip bad test. 
* gnu/packages/cran.scm (r-mi)[arguments]: Add phase 'skip-bad-tests.
[native-inputs]: Add r-betareg, r-survival, and r-truncnorm.

Change-Id: I662a6f8d43c03ae31254f8b6489791d59dce6d4b
 2025-11-29 12:21:35 +01:00
Ricardo Wurmus
084ab3ba79 gnu: r-ggvenn: Add missing test input. 
* gnu/packages/cran.scm (r-ggvenn)[native-inputs]: Add r-testthat.

Change-Id: Id2ddbaf3f507d3113af7d77be866f7abd67a50e1
 2025-11-29 12:21:35 +01:00
Ricardo Wurmus
1464b58032 gnu: r-gchain: Update to 0.2.0-2.19f8bb9. 
* gnu/packages/bioinformatics.scm (r-gchain): Update to 0.2.0-2.19f8bb9.
[arguments]: Add phase 'biostrings-compatibility; adjust phase
'skip-bad-tests.

Change-Id: Ia8719400b555625dd0067179ee3d142ee2d59ccc
 2025-11-29 12:21:35 +01:00
Ricardo Wurmus
0b8a12d2b2 gnu: r-ggmosaic: Make compatible with latest ggplot2. 
* gnu/packages/cran.scm (r-ggmosaic)[arguments]: Add phase
'ggplot-compatibility.

Change-Id: I73200b7c0a588ea54deb39f729b15d422a94d4b1
 2025-11-29 12:21:35 +01:00
Ricardo Wurmus
1ec0fb5d18 gnu: r-abaenrichment: Adjust for testthat compatibility. 
* gnu/packages/bioconductor.scm (r-abaenrichment)[arguments]: Add phase
'testthat-compatibility.

Change-Id: I532339067402d2465b793bb16f6b137c425170ff
 2025-11-29 12:21:35 +01:00
Ricardo Wurmus
5492b50068 gnu: r-tcgautils: Update to 1.30.1. 
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.30.1.

Change-Id: Id7b543c1418e31606733ce7a700dab540116ff12
 2025-11-29 12:21:35 +01:00
Ricardo Wurmus
6e31271d2f gnu: r-annotationhubdata: Add missing input. 
* gnu/packages/bioconductor.scm (r-annotationhubdata)[native-inputs]: Add
r-genomeinfodbdata.

Change-Id: Iaf0e3635d88c26ff4ed62e638eefe5973b695281
 2025-11-29 12:21:35 +01:00
Ricardo Wurmus
94262f11fb gnu: r-papaja: Add missing input and enable all tests. 
* gnu/packages/cran.scm (r-papaja)[native-inputs]: Add r-beeswarm.
[arguments]: Remove phase 'delete-bad-tests.

Change-Id: Iab573e6a373e848977738c319d9e74fe23cde7c4
 2025-11-29 12:21:35 +01:00
Ricardo Wurmus
99449eafb6 gnu: r-metabocoreutils: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-metabocoreutils): Update to 1.18.1.

Change-Id: I20c617e069a0b385e31f6e9bbf31524d81957048
 2025-11-29 12:21:34 +01:00
Ricardo Wurmus
77cc7fba69 gnu: r-seqminer: Disable two tests. 
* gnu/packages/cran.scm (r-seqminer)[arguments]: Add phase 'disable-bad-tests.

Change-Id: I939922a57d8cbd1f50c0dababd527cf4e4144b44
 2025-11-29 12:21:34 +01:00
Ricardo Wurmus
37a20d67b7 gnu: r-trycatchlog: Adjust for testthat compatibility. 
* gnu/packages/cran.scm (r-trycatchlog)[arguments]: Add phase
'testthat-compatibility.

Change-Id: I4ce1676de6b07113aeb772163f698511b5d82bd9
 2025-11-29 12:21:34 +01:00
Ricardo Wurmus
a4af63d388 gnu: r-bindr: Adjust for testthat compatibility. 
* gnu/packages/cran.scm (r-bindr)[arguments]: Add phase
'testthat-compatibility.

Change-Id: I766680176275e31ef110150b270d29bec8ad8f22
 2025-11-29 12:21:34 +01:00
Ricardo Wurmus
38894961c2 gnu: r-mosaic: Add missing test inputs. 
* gnu/packages/cran.scm (r-mosaic)[properties]: Record
updater-extra-native-inputs.
[arguments]: Only skip one test in test-read.file.R.
[native-inputs]: Add r-broom, r-ggdendro, r-ggrepel, and r-latticeextra.

Change-Id: If9ee5ee970ecfaa4b291d92a7f467585ea3a9453
 2025-11-29 12:21:34 +01:00
Ricardo Wurmus
8252a13fb4 gnu: r-ihw: Add missing test inputs. 
* gnu/packages/bioconductor.scm (r-ihw)[properties]: Record
updater-extra-native-inputs.
[native-inputs]: Add r-ggplot2 and r-scales.

Change-Id: I9897da6c9e18ccd4ed401237414c340088a00614
 2025-11-29 12:21:34 +01:00
Ricardo Wurmus
e18ec2c142 gnu: r-rpresto: Disable tests. 
* gnu/packages/cran.scm (r-rpresto)[arguments]: Disable tests.

Change-Id: I988975506092cd70e566171ec4f6dbd00aff99e9
 2025-11-29 12:21:34 +01:00
Ricardo Wurmus
3938247527 gnu: r-manipulatewidget: Skip bad tests. 
* gnu/packages/cran.scm (r-manipulatewidget)[arguments]: Add phase
'testthat-compatibility.

Change-Id: I5d3741de0d68701e8bf972de786e42163bd3af12
 2025-11-29 12:21:33 +01:00
Ricardo Wurmus
a4543d40cc gnu: r-rvenn: Skip four tests. 
* gnu/packages/cran.scm (r-rvenn)[arguments]: Add phase 'skip-bad-tests.

Change-Id: I5885179790b4a151360f45de83e4e18feccf6267
 2025-11-29 12:21:33 +01:00
Ricardo Wurmus
d5ff1cf682 gnu: r-tidytext: Add missing input. 
* gnu/packages/cran.scm (r-tidytext)[native-inputs]: Add r-tidyr.

Change-Id: I7a888dd04d1f36fd4aacf372b02326e02433c844
 2025-11-29 12:21:33 +01:00
Ricardo Wurmus
eec6a55ed4 gnu: r-gutils: Add missing input and patch for testthat compatibility. 
* gnu/packages/bioinformatics.scm (r-gutils)[arguments]: Add phase
'testthat-compatibility.
[native-inputs]: Add r-xvector.

Change-Id: I6178bb62486167445921069e0f40e122f10c838e
 2025-11-29 12:21:33 +01:00
Ricardo Wurmus
4812369fa5 gnu: r-msigdbr: Enable tests. 
The CRAN tarball appears to have been replaced in place shortly after the
initial upload.

* gnu/packages/cran.scm (r-msigdbr)[source]: Update hash.
[arguments]: Remove phase 'disable-bad-tests.

Change-Id: Iff1678e3802178ff344fc7efdee20f897df08f03
 2025-11-29 12:21:33 +01:00
Ricardo Wurmus
b44debeed4 gnu: r-rcpparmadillo: Update to 15.2.2-1. 
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 15.2.2-1.

Change-Id: I93d73f3cde00db8fb4ed5b8e693255e2b3eda582
 2025-11-29 12:21:33 +01:00
Ricardo Wurmus
e646f12a9d gnu: r-paws-common: Update to 0.8.7. 
* gnu/packages/cran.scm (r-paws-common): Update to 0.8.7.

Change-Id: Iee0625cab4f6effefef8356136cc760b3dd28f33
 2025-11-29 12:21:33 +01:00
Ricardo Wurmus
27530f1000 gnu: r-highs: Update to 1.12.0-1. 
* gnu/packages/cran.scm (r-highs): Update to 1.12.0-1.

Change-Id: Id96dd684446965c18e0be871b317327e205848c3
 2025-11-29 12:21:33 +01:00
Ricardo Wurmus
fb331f1eff gnu: r-mlr3measures: Update to 1.2.0. 
* gnu/packages/cran.scm (r-mlr3measures): Update to 1.2.0.

Change-Id: I62f1403b3e6fee09ea6b7c0f7489a34b116180f8
 2025-11-29 12:21:32 +01:00
Ricardo Wurmus
de9a97ede6 gnu: r-spatstat-random: Update to 3.4-3. 
* gnu/packages/cran.scm (r-spatstat-random): Update to 3.4-3.

Change-Id: If290cd43eac8fd7f4af783b19d5333308dd957c6
 2025-11-29 12:21:32 +01:00
Ricardo Wurmus
5a1c4c2301 gnu: r-spatstat-explore: Update to 3.6-0. 
* gnu/packages/cran.scm (r-spatstat-explore): Update to 3.6-0.

Change-Id: I4db16ad3dba74a5597f7a0ba74cefef2063a04df
 2025-11-29 12:21:32 +01:00
Ricardo Wurmus
0dbe03afac gnu: r-parameters: Update to 0.28.3. 
* gnu/packages/cran.scm (r-parameters): Update to 0.28.3.

Change-Id: I8f6084d1e42e8b10ef8f1f958580daf0c07b1497
 2025-11-29 12:21:32 +01:00
Ricardo Wurmus
9815cbb2a0 gnu: r-rapidjsonr: Update to 1.2.1. 
* gnu/packages/cran.scm (r-rapidjsonr): Update to 1.2.1.

Change-Id: If2be893a4429efa1bbb0b02a81cc86f3f20f6f77
 2025-11-29 12:21:32 +01:00
Ricardo Wurmus
86b2c8dbc7 gnu: r-brglm2: Update to 1.0.1. 
* gnu/packages/cran.scm (r-brglm2): Update to 1.0.1.

Change-Id: I6031ae780db5b00c4d19dc46c3c9eb702e8f02e3
 2025-11-29 12:21:32 +01:00
Ricardo Wurmus
c5c0f904e2 gnu: r-insight: Update to 1.4.3. 
* gnu/packages/cran.scm (r-insight): Update to 1.4.3.

Change-Id: I885013af79df6b7b14991b0694c4cc81613e3c9f
 2025-11-29 12:21:32 +01:00
Ricardo Wurmus
066c228ded gnu: r-cubature: Update to 2.1.4-1. 
* gnu/packages/cran.scm (r-cubature): Update to 2.1.4-1.

Change-Id: I6cb4e09874824f86c24cae1d547135fb4f6e6a29
 2025-11-29 12:21:32 +01:00
Ricardo Wurmus
71346f767d gnu: r-geometries: Update to 0.2.5. 
* gnu/packages/cran.scm (r-geometries): Update to 0.2.5.
[native-inputs]: Add r-tinytest.

Change-Id: I9f906def20397bfbef7a5d63d241d04c10295270
 2025-11-29 12:21:31 +01:00