tribes/guix
1
0
Fork 1
mirror of https://git.savannah.gnu.org/git/guix.git synced 2026-04-24 19:21:24 +02:00
Code Activity
45,186 Commits 75 Branches 40 Tags
377bd155ea4d8de5dc0bf6ee6cd46d8aff16a769
Commit Graph

45186 Commits

This Branch
This Branch
All Branches
Author SHA1 Message Date
Marius Bakke
377bd155ea gnu: dbus: Fix CVE-2019-12749. 
* gnu/packages/patches/dbus-CVE-2019-12749.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/glib.scm (dbus)[replacement]: New field.
(dbus/fixed): New variable.
 2019-06-20 22:49:31 +02:00
Ricardo Wurmus
28618b05f0 gnu: pigx-rnaseq: Update to 0.0.7. 
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.7.
[inputs]: Add coreutils and sed.
 2019-06-20 22:29:43 +02:00
Giovanni Biscuolo
78407a27cf licenses: Add Historical Permission Notice and Disclaimer license 
* gnu/licenses.scm (hpnd): New variable.
 2019-06-20 18:24:49 +02:00
Andreas Enge
eacf29835d gnu: Add iml. 
* gnu/packages/algebra.scm (iml): New variable.
 2019-06-20 17:36:39 +02:00
Andreas Enge
264334716f gnu: Add ppl. 
* gnu/packages/maths.scm (ppl): New variable.
 2019-06-20 16:46:37 +02:00
Kristofer Buffington
ace8e269a4 services: opensmtpd: Extend the PAM service. 
* gnu/services/mail.scm (%opensmtpd-pam-services): New variable.
(opensmtpd-service-type)[extensions]: Add it, extending
PAM-ROOT-SERVICE-TYPE.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
 2019-06-20 15:54:51 +02:00
Ricardo Wurmus
30adfd3600 gnu: ngs-sdk: Update to 2.9.6. 
* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.9.6.
 2019-06-20 14:33:57 +02:00
Ricardo Wurmus
20874b7044 gnu: sra-tools: Update to 2.9.6. 
* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.6.
 2019-06-20 14:33:57 +02:00
Ricardo Wurmus
7cb44fb571 gnu: ncbi-vdb: Update to 2.9.6. 
* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.6.
[arguments]: Pass HAVE_HDF5 make flag; add build phase "patch-krypto-flags".
 2019-06-20 14:33:57 +02:00
Robert Vollmert
b46a9b9a5e import: hackage: Add two expected failing test cases. 
This adds failing test cases for two hackage import bugs:
https://debbugs.gnu.org/cgi/bugreport.cgi?bug=25138
https://debbugs.gnu.org/cgi/bugreport.cgi?bug=35743

* tests/hackage.scm: Make comment style consistent. Add two
cabal parsing tests, marked as expected failures.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-20 14:07:01 +02:00
Robert Vollmert
3149c00264 utils: canonical-newline-port: Fix handling of carriage return at buffer end. 
Prior to this change the added test fails for me locally at byte
1024. It might depend on some default buffer sizes.

Fixes <https://bugs.gnu.org/35863>.

* tests/utils.scm ("canonical-newline-port-1024"): Add test.
* guix/utils.scm (canonical-newline-port): Correct comments on CR/LF.
Remove CR even when they're at the end of the buffer.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-20 14:07:01 +02:00
Ludovic Courtès
c050f18700 gnu: guile: Add 2.2.5. 
* gnu/packages/guile.scm (guile-2.2.5): New variable.
 2019-06-20 14:07:01 +02:00
Ricardo Wurmus
becb9cbfe1 gnu: python-jupyter-console: Update to 6.0.0. 
* gnu/packages/python-xyz.scm (python-jupyter-console): Update to 6.0.0.
[arguments]: Enable tests.
[propagated-inputs]: Replace python-prompt-toolkit-1 with
python-prompt-toolkit.
 2019-06-20 13:14:16 +02:00
Ricardo Wurmus
8e590c8153 gnu: python2-jupyter-console: Split from python-jupyter-console. 
* gnu/packages/python-xyz.scm (python2-jupyter-console): Implement without
package-with-python2.
 2019-06-20 13:14:16 +02:00
Nicolas Goaziou
e2ab228b46 Revert "gnu: Add libgd." 
This reverts commit 059e4c9a15.
 2019-06-20 12:39:21 +02:00
Andreas Enge
197ebc36be gnu: Add lrcalc. 
* gnu/packages/algebra.scm (lrcalc): New variable.
 2019-06-20 12:21:11 +02:00
Andreas Enge
66c67e7ba1 gnu: Add eclib. 
* gnu/packages/algebra.scm (eclib): New variable.
 2019-06-20 12:21:04 +02:00
Andreas Enge
6cbedbd2f2 gnu: Add m4rie. 
* gnu/packages/algebra.scm (m4rie): New variable.
 2019-06-20 12:20:11 +02:00
Josh Holland
9553a41dbe gnu: weechat: update to 2.5 
* gnu/packages/irc.scm (weechat): update to 2.5

Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
 2019-06-20 11:55:09 +02:00
Nicolas Goaziou
25cbaa9e70 gnu: Add python-fpylll. 
* gnu/packages/algebra.scm (python-fpylll): New variable.
 2019-06-20 11:07:12 +02:00
Nicolas Goaziou
1de48e8f8a gnu: fplll: Update to 5.2.1. 
* gnu/packages/algebra.scm (fplll): Update to 5.2.1.
[source]: Use Github tagged release: the original tarball no longer exists.
[native-inputs]: Add Autoconf and al.
[homepage]: Update it, the previous one no longer exists.
[description]: Expound description.
 2019-06-20 11:03:37 +02:00
Tobias Geerinckx-Rice
f7dbf186b4 services: Fix typo in (gnu services mail) exports. 
* gnu/services/mail.scm (define-module):
Re-spell ‘%default-imap4d-config-file’.
 2019-06-20 10:43:25 +02:00
Nicolas Goaziou
75a73bb024 gnu: Add symmetrica. 
* gnu/packages/algebra.scm (symmetrica): New variable.
* gnu/packages/patches/symmetrica-bruch.patch:
* gnu/packages/patches/symmetrica-int32.patch:
* gnu/packages/patches/symmetrica-return_values.patch:
* gnu/packages/patches/symmetrica-sort_sum_rename.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add patches.
 2019-06-20 10:19:12 +02:00
Alex Griffin
a42cb6f1f1 gnu: zathura: Install icons. 
* gnu/packages/pdf.scm (zathura)[native-inputs]: Add librsvg to build and
install the application icons.

Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
 2019-06-20 10:10:31 +02:00
Nicolas Goaziou
059e4c9a15 gnu: Add libgd. 
* gnu/packages/image.scm (libgd): New variable.
 2019-06-20 10:09:17 +02:00
Nicolas Goaziou
ab398380eb gnu: Move ratpoints into a different module. 
* gnu/packages/maths.scm (ratpoints): Move...
* gnu/packages/algebra.scm: ...here.
 2019-06-20 09:20:29 +02:00
Meiyo Peng
5543d3bb09 gnu: spdlog: Clarify license. 
* gnu/packages/logging.scm (spdlog): Clarify license of the bundled fmt
  library.

Signed-off-by: Gábor Boskovits <boskovits@gmail.com>
 2019-06-20 05:38:58 +02:00
Tobias Geerinckx-Rice
c5c51bda0b gnu: bind: Update to 9.14.3 [fixes CVE-2019-6471]. 
* gnu/packages/dns.scm (isc-bind): Update to 9.14.3.
 2019-06-20 00:28:14 +02:00
Andreas Enge
80ee7c4a48 gnu: zn_poly: Rename to zn-poly, according to our naming conventions. 
Reported by Nicolas Goaziou <mail@nicolasgoaziou.fr>.

This is a follow-up to commit 01822e3ebf.
* gnu/packages/sagemath.scm (zn_poly): Rename to...
* gnu/packages/sagemath.scm (zn-poly): ...this.
 2019-06-20 00:03:46 +02:00
Andreas Enge
a1dcaacb7b gnu: Add brial. 
* gnu/packages/sagemath.scm (brial): New variable.
 2019-06-19 23:57:49 +02:00
Andreas Enge
37edfb0f1c gnu: Add m4ri. 
* gnu/packages/algebra.scm (m4ri): New variable.
 2019-06-19 23:45:29 +02:00
Dan Frumin
3f9a027ce2 gnu: Add crispy-doom. 
* gnu/packages/games.scm (crispy-doom): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-19 22:56:28 +02:00
Brian Leung
8785a71faf gnu: emacs-unpackaged-el: Add patch for missing require statement. 
* gnu/packages/emacs-xyz.scm (emacs-unpackaged-el)[source]: Add patch.
* gnu/packages/patches/emacs-unpackaged-req.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-19 22:56:27 +02:00
Giacomo Leidi
a7a3182761 gnu: Add numix-theme. 
* gnu/packages/gnome.scm (numix-theme): New variable

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2019-06-19 22:56:27 +02:00
Ludovic Courtès
aad086d871 grafts: Avoid 'query-valid-derivers' RPC. 
Previously we'd make 502 'query-valid-derivers' RPCs for
"guix build vim -d", and after this patch, we don't do any.

Furthermore, the previous strategy was "stateful" in the sense that
'item->deriver' could return a derivation that is not the one that was
actually computed by this process, but an "equivalent" one (due to
fixed-output derivations); which one is chosen would depend on the state
of the store.

This in turn means that we'd have to call 'read-derivation-from-file' to
actually read .drv files (as opposed to getting them from
%DERIVATION-CACHE).  This is costly and doesn't work with
GUIX_DAEMON_SOCKET=ssh://….

* guix/grafts.scm (item->deriver): Remove.
(reference-origin): New procedure.
(cumulative-grafts): Use it instead of 'item->deriver'.
 2019-06-19 22:56:27 +02:00
Ludovic Courtès
2ef22a9f37 derivations: Add 'derivation-input-derivation'. 
* guix/derivations.scm (derivation-input-derivation): New procedure.
(derivation-prerequisites): Use it.
 2019-06-19 22:56:27 +02:00
Nicolas Goaziou
74247b80e5 gnu: Add python-pandocfilters. 
* gnu/packages/textutils.scm (python-pandocfilters): New variable.
 2019-06-19 22:01:53 +02:00
Nicolas Goaziou
0c842e3a59 gnu: Add ratpoints. 
* gnu/packages/maths.scm (ratpoints): New variable.
* gnu/packages/patches/ratpoints-sturm_and_rp_private.patch: New file.
* gnu/local.mk (dist_patch_DATA): Reference patch.
 2019-06-19 21:43:12 +02:00
Andreas Enge
7c5f623192 gnu: Add gf2x. 
* gnu/packages/algebra.scm (gf2x): New variable.
 2019-06-19 18:56:55 +02:00
Andreas Enge
01822e3ebf gnu: Add zn_poly. 
* gnu/packages/sagemath.scm (zn_poly): New variable.
 2019-06-19 18:56:55 +02:00
Andreas Enge
3923e9d942 gnu: Add pynac. 
* gnu/packages/sagemath.scm (pynac): New variable.
 2019-06-19 18:56:55 +02:00
Andreas Enge
538230c933 gnu: python-gmpy2: Update to 2.1.0b1. 
The gmpy2 package has become a standard package in sage-8.7, and the latest
stable release is too old.

* gnu/packages/sagemath.scm (python-gmpy2): Update to 2.1.0b1.
 2019-06-19 18:56:55 +02:00
Tobias Geerinckx-Rice
f58b10cb30 gnu: balsa: Update to 2.5.7. 
* gnu/packages/mail.scm (balsa): Update to 2.5.7.
[inputs]: Build with gtksourceview@3.
 2019-06-19 17:58:48 +02:00
Tobias Geerinckx-Rice
c8a67f13c9 gnu: nano: Update to 4.3. 
* gnu/packages/nano.scm (nano): Update to 4.3.
 2019-06-19 17:50:44 +02:00
Tobias Geerinckx-Rice
76472ed959 gnu: notmuch: Update to 0.29.1. 
* gnu/packages/mail.scm (notmuch): Update to 0.29.1.
 2019-06-19 17:50:44 +02:00
Tobias Geerinckx-Rice
903bc2672d gnu: mpd: Update to 0.21.10. 
* gnu/packages/mpd.scm (mpd): Update to 0.21.10.
 2019-06-19 17:50:44 +02:00
Tobias Geerinckx-Rice
2dcde3c733 gnu: perl-xml-sax: Update to 1.02. 
* gnu/packages/xml.scm (perl-xml-sax): Update to 1.02.
 2019-06-19 17:50:43 +02:00
Tobias Geerinckx-Rice
1f6dd7e9c2 gnu: shadow: Update home page. 
* gnu/packages/admin.scm (shadow)[home-page]: Update to new project home.
 2019-06-19 17:50:43 +02:00
Tobias Geerinckx-Rice
bb3dc8025a gnu: shadow: Update to 4.7. 
* gnu/packages/admin.scm (shadow): Update to 4.7.
 2019-06-19 17:50:43 +02:00
Tobias Geerinckx-Rice
a6dc3cc197 gnu: ansible: Update to 2.8.1. 
* gnu/packages/admin.scm (ansible): Update to 2.8.1.
 2019-06-19 17:50:43 +02:00