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Author SHA1 Message Date
Sergey Trofimov
37e8eeaafb gnu: fava: Update to 1.27. 
* gnu/packages/finance.scm (fava): Update to 1.27.
[arguments] <phases>: Remove 'relax-requirements, and 'set-home.
[native-inputs]: Remove python-chardet, python-dateutil, and
python-setuptootls-scm. Add python-babel, python-mypy,
python-pytest-cov, python-setuptootls, python-twine,
python-types-setuptootls, python-types-simplejson, and python-wheel.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Iee27197ece9685c500afe0dedb8ba33e02eb1ea1
 2025-01-20 21:37:26 +01:00
Sergey Trofimov
e2945c650d gnu: beancount: Fix build. 
* gnu/packages/finance.scm (beancount)
[native-inputs]: Add python-wheel and python-setuptools.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-01-20 21:37:26 +01:00
Sergey Trofimov
848d9f3d07 gnu: Add python-types-simplejson. 
* gnu/packages/python-xyz.scm (python-types-simplejson): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-01-20 21:37:26 +01:00
Sergey Trofimov
ece7f83d4e gnu: python-pdfminer-six: Update to 20240706. 
* gnu/packages/python-xyz.scm (python-pdfminer-six): Update to 20240706.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-01-20 21:37:26 +01:00
Sergey Trofimov
7f6b6775ca gnu: python-markdown2: Update to 2.5.2. 
* gnu/packages/python-xyz.scm (python-markdown2)
[arguments] <phases>: Use default 'check.
[native-inputs]: Add python-pytest, python-setuptools and python-wheel.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ic3df25863bbb37ec6282ec5dcbf815461663f8cd
 2025-01-20 21:37:26 +01:00
Sergey Trofimov
980d59617c gnu: python-flask-babel: Update to 4.0.0. 
* gnu/packages/python-web.scm (python-flask-babel): Update to 4.0.0.
[source]: Fetch from git as PyPI release doesn't include tests.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-poetry-core, python-pytest,
python-pytest-cov, and python-pytest-mock.
[propagated-inputs]: Sort.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I253b88eac7bec8152dc97634059c2402624cb961
 2025-01-20 21:37:26 +01:00
Sergey Trofimov
6f66ff8adb gnu: python-babel: Update to 2.16.0. 
* gnu/packages/python-xyz.scm (python-babel): Update to 2.16.0.
[source]: Adjust uri as it's changed in PyPI archive.
[build-system]: Swap to pyproject-build-system.
[arguments] <phases>: Use default 'check.
[native-inputs]: Add python-setuptools and python-wheel.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I32b7c5613e7db2c676745d6621f04b52a1cdf0ba
 2025-01-20 21:37:26 +01:00
Ricardo Wurmus
ae63ff8dca gnu: pyscenic: Update to 0.12.1-1.eaf23eb. 
* gnu/packages/bioinformatics.scm (pyscenic): Update to 0.12.1-1.eaf23eb.
[arguments]: Update phase 'do-not-reference-deleted-modules.
[propagated-inputs]: Add python-numexpr.
[native-inputs]: Add python-wheel.

Change-Id: Ib1b5a7d36a24b280160befe579057a241d69455d
 2025-01-20 21:37:26 +01:00
Ricardo Wurmus
43b061aaf6 gnu: python-pydantic-2: Update to 2.7.0. 
* gnu/packages/python-xyz.scm (python-pydantic-2): Update to 2.7.0.
[arguments]: Update tests.
[native-inputs]: Add tzdata-for-tests and python-jsonschema; remove
python-faker.

Change-Id: I8c85598f7603c58108602c6d67aa27314dea285e
 2025-01-20 21:37:26 +01:00
Ricardo Wurmus
fd954108f2 gnu: python-pydantic-core: Update to 2.18.1. 
* gnu/packages/python-xyz.scm (python-pydantic-core): Update to 2.18.1.
[arguments]: Replace rust-jiter-0.0.4 with rust-jiter-0.2, rust-strum-0.25
with rust-strum-0.26, rust-strum-macros-0.25 with rust-strum-macros-0.26, and
rust-speedate-0.13 with rust-speedate-0.14.
[native-inputs]: Add python-typing-extensions.

Change-Id: I8686509f43667484847a72972aa2dd88dbce9343
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
202248ba69 gnu: Add rust-jiter-0.2. 
* gnu/packages/crates-io.scm (rust-jiter-0.2): New variable.

Change-Id: I7488999f653e126e7179728d732fb0054f949bd9
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
072e5d404e gnu: python-annotated-types: Update to 0.7.0. 
* gnu/packages/python-xyz.scm (python-annotated-types): Update to 0.7.0.

Change-Id: I610b144339841768b4ce861d5457cf4184f756a2
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
573045f5f7 gnu: macs-3: Add missing input. 
* gnu/packages/bioinformatics.scm (macs-3)[native-inputs]: Add python-wheel.

Change-Id: I22b8d8e144434ae537af7c113f4719392933e90c
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
2825921d1e gnu: python-httpretty: Enable tests. 
* gnu/packages/web.scm (python-httpretty)[arguments]: Enable most tests.
[native-inputs]: Add nss-certs-for-test, python-freezegun, python-httplib2,
and python-pyparsing.

Change-Id: I08d2c14a2e81559d41dc38f0eeb34c2d6c59125a
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
aa704e51ab gnu: python-dulwich: Update to 0.21.7. 
* gnu/packages/python-xyz.scm (python-dulwich): Update to 0.21.7.
[build-system]: Use pyproject-build-system.
[arguments]: Use #:test-flags; fix tests after 'unpack phase, split off
'pre-check phase.
[native-inputs]: Replace git with git-minimal/pinned; add python-mypy,
python-paramiko, python-pytest, python-requests, python-setuptools, and
python-wheel; remove python-mock and python-gpg.

Change-Id: I642de3e7707d545672066c6e59c9bcc2b5926097
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
8992cf4cf1 gnu: python-geventhttpclient: Update to 2.3.3. 
* gnu/packages/python-web.scm (python-geventhttpclient): Update to 2.3.3.
[source]: Fetch from git repository; remove snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Use #:test-flags; remove all custom phases.
[native-inputs]: Add python-requests, python-setuptools, and python-wheel.
[propagated-inputs]: Remove python-six.

Change-Id: Ide97ffb7d656f58dd6693bd59ff82706bfea6caa
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
ddfa62f104 gnu: python-gevent: Propagate greenlet. 
* gnu/packages/python-xyz.scm (python-gevent)[native-inputs]: Move
python-greenlet from here...
[propagated-inputs]: ...to here.
[arguments]: Adjust.

Change-Id: I5ebac1dd5e8c16b11e4855da78972c98f10cd285
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
6cb2030688 gnu: python-eventlet: Update to 0.38.2. 
* gnu/packages/python-xyz.scm (python-eventlet): Update to 0.38.2.
[native-inputs]: Add python-pre-commit.
[arguments]: Disable one more test.

Change-Id: I73638abba7d5363538d7c65254e610e704fbe5d0
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
e06450378c gnu: python-gevent: Update to 24.11.1. 
* gnu/packages/python-xyz.scm (python-gevent): Update to 24.11.1.
[build-system]: Use pyproject-build-system.
[arguments]: Use #:test-flags; enable more tests; rename
'add-greenlet-on-C_INCLUDE_PATH to 'augment-C_INCLUDE_PATH.
[propagated-inputs]: Remove python-greenlet.
[native-inputs]: Add python-cffi, python-coverage, python-greenlet,
python-idna, python-requests, python-setuptools, and python-wheel.
[inputs]: Add libuv.

Change-Id: Idd09ca01caf2977783c5a05eac2817b5630df327
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
aa0d8b7e6c gnu: python-pandas-2: Restrict number of test processes. 
* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Restrict to at
most four processes.

Change-Id: I8ee4cb29ad922e9b853515b5f0e8f8aabca52c92
 2025-01-20 21:37:24 +01:00
Ricardo Wurmus
0a7a2b24d3 gnu: python-pandas-2: Remove X. 
These tests are not run anyway, so there is no need to launch an X server.

* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Rename
'prepare-x phase to 'pre-check.
[native-inputs]: Remove xorg-server-for-tests.

Change-Id: Ib85883360397d2715a1893b74435d96a1d119f9e
 2025-01-20 21:37:24 +01:00
Ricardo Wurmus
aa0650d159 gnu: python-pythran: Update to 0.17.0. 
* gnu/packages/python-science.scm (python-pythran): Update to 0.17.0.
[build-system]: Use pyproject-build-system.
[source]: Remove obsolete snippet.
[arguments]: Remove phase 'do-not-install-third-parties and custom 'check
phase; use #:test-flags and add 'pre-check phase.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I49ebdd21cfb0668dd84f0d12c460a86ed694c7d6
 2025-01-20 21:37:24 +01:00
Ricardo Wurmus
f0739f3ae4 gnu: python-beniget: Update to 0.4.2.post1. 
* gnu/packages/python-xyz.scm (python-beniget): Update to 0.4.2.post1.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I03c53e97f1bb4ae7c13a4af2c7e4434137f764d6
 2025-01-20 21:37:24 +01:00
Ricardo Wurmus
a6ab0705c4 gnu: python-gast: Update to 0.6.0. 
* gnu/packages/python-xyz.scm (python-gast): Update to 0.6.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.
[native-inputs]: Add python-setuptools and python-wheel.
[propagated-inputs]: Remove.

Change-Id: I3cc17b2c5434e637435f76482e0dcaf54c75c0dd
 2025-01-20 21:37:24 +01:00
Sharlatan Hellseher
6be739763c gnu: linkchecker: Update to 10.5.0. 
* gnu/packages/web.scm (linkchecker): Update to 10.5.0. Improve package
style. Fix bulid.
[build-system]: Swap to pyproject-build-system.
[arguments]<test-flags>: Skip 2 tests.
<phases>: Add 'set-version. Use default 'check.
[inputs]: Remove python-pyxdg.
[native-inputs]: Remove lables. Remove gettext-minimal, python-miniboa,
and python-parameterized; add python-hatch-vcs, python-hatchling, and
python-setuptools-scm.

Change-Id: I2292be0305e8ad3991680ced6b154c48571e3efc
 2025-01-20 21:37:24 +01:00
Sharlatan Hellseher
908b9b27e5 gnu: python-email-validator: Update to 2.2.0. 
* gnu/packages/python-xyz.scm (python-email-validator): Update to
2.2.0. Improve style.
[build-system]: Swap to pyrpoject-build-system.
[arguments]<test-flags>: Skip one test.
<phases>: Remove 'use-dnspython as removed in
<https://github.com/JoshData/python-email-validator/pull/13>.
[native-inputs]: Add python-pytest, python-setuptools, and python-wheel.

Change-Id: Idc51ad58fe734071aa66f44bce0fb7cbf84831b6
 2025-01-20 21:37:24 +01:00
Sharlatan Hellseher
1ebc72c323 gnu: python-dnspython: Update to 2.7.0. 
* gnu/packages/python-xyz.scm (python-dnspython): Update to
2.7.0. Improve style.
[source]: PyPI archive has been swapped from .zip to .tar.gz.
[build-system]: Swap to pyproject-build-system.
[arguments]<test-flags>: Skip 2 tests.
[propagated-inputs]: Add python-cryptography, python-aioquic, python-h2,
python-httpcore, python-httpx, python-idna, and python-trio.
[native-inputs]: Remove unzip; add python-hatchling and python-pytest.

Change-Id: I726a9d68c61435089c1e7a846e8aa7c8b41f8378
 2025-01-20 21:37:24 +01:00
Ricardo Wurmus
7589dbc951 gnu: python-joblib: Disable one additional test. 
* gnu/packages/python-xyz.scm (python-joblib)[arguments]: Disable one more
test.

Change-Id: Id0b99ba3abb37bf49d26434b6719a7f6f77ee00a
 2025-01-20 21:37:24 +01:00
Ricardo Wurmus
9992e1eb73 gnu: python-starlette: Update to 0.42.0. 
* gnu/packages/python-web.scm (python-starlette): Update to 0.42.0.

Change-Id: I2cdfadf4856e460f7b7cae9f8654a1806839b9ea
 2025-01-20 21:37:24 +01:00
Sharlatan Hellseher
b565e45666 gnu: python-pydantic: Fix build. 
As pyproject-build system now reads pytest config from pyproject.toml or
pytest.ini files it starts highlighting enabled "fail on warnings" which
were ignored before, this change silent it again.

* gnu/packages/python-xyz.scm (python-pydantic) [arguments]<test-flags>:
Skip 5 tests.
[phases]{pre-check}: Ignore all pytest warnings set in pyproject.toml.

Change-Id: I8551ba672d095b56f90955e4203c8a2aac270a4b
 2025-01-20 21:37:23 +01:00
Ricardo Wurmus
dde6ba46da gnu: python-tox: Simplify. 
* gnu/packages/python-check.scm (python-tox)[arguments]: Enable more tests;
remove phase 'virtualenv-compatibility.

Change-Id: I39a637cfc2385da74c11fc82ea811a26cf5f849a
 2025-01-20 21:37:23 +01:00
Ricardo Wurmus
0010d59106 gnu: python-a2wsgi: Disable one test. 
* gnu/packages/python-web.scm (python-a2wsgi)[arguments]: Disable one more
test.

Change-Id: I034da8787155eaa6fd49f92ed9a84887c8311cbe
 2025-01-20 21:37:23 +01:00
Ricardo Wurmus
282b9d313c gnu: python-devpi-process: Add missing input. 
* gnu/packages/python-web.scm (python-devpi-process)[native-inputs]: Add
nss-certs-for-test.

Change-Id: Ia3ee82b6ba7c7e1832e41a3520056f740a09d6e6
 2025-01-20 21:37:23 +01:00
Ricardo Wurmus
86becf501b gnu: python-httpx: Update to 0.28.1. 
* gnu/packages/python-web.scm (python-httpx): Update to 0.28.1.

Change-Id: Ia7f1659eeeee05de763b000cda4bc9a60c418c21
 2025-01-20 21:37:23 +01:00
Ricardo Wurmus
30cc0d4b88 gnu: python-uvicorn: Update to 0.34.0. 
* gnu/packages/python-web.scm (python-uvicorn): Update to 0.34.0.
[native-inputs]: Add nss-certs-for-test.

Change-Id: I48825939c91464c132a9ee85a986a39173f6854e
 2025-01-20 21:37:23 +01:00
Ricardo Wurmus
7548058ae4 gnu: python-waitress: Update to 3.0.2. 
* gnu/packages/python-xyz.scm (python-waitress): Update to 3.0.2.
[native-inputs]: Add python-coverage.

Change-Id: I6d0b78afe6e3ab371473f26db144586c0d97abba
 2025-01-20 21:37:23 +01:00
Ricardo Wurmus
64c7d93184 gnu: python-devtools: Simplify. 
* gnu/packages/python-xyz.scm (python-devtools)[arguments]: Enable one
additional test; delete obsolete phase 'relax-requirements.

Change-Id: I5dcf88954cdf8d37e522c425bf7bef4c29913205
 2025-01-20 21:37:23 +01:00
Ricardo Wurmus
6076135cba gnu: python-typing-extensions: Update to 4.12.2. 
* gnu/packages/python-build.scm (python-typing-extensions): Update to 4.12.2.

Change-Id: I410ec4c8ed29624638476964c9f7a28f894e9fc8
 2025-01-20 21:37:23 +01:00
Ricardo Wurmus
0813d9ad5c gnu: python-virtualenv: Update to 20.28.0. 
* gnu/packages/python-xyz.scm (python-virtualenv): Update to 20.28.0.
[build-system]: Use pyproject-build-system.
[arguments]: Disable a test.
[native-inputs]: Add python-covdefaults, python-coverage, python-flaky,
python-hatch-vcs, python-hatchling, python-packaging, python-pytest-env,
python-pytest-mock, python-pytest-timeout, python-setuptools, and
python-time-machine; remove python-mock and python-setuptools-scm.
[propagated-inputs]: Add python-importlib-metadata and python-platformdirs;
remove python-appdirs and python-six.

Change-Id: Id14e7608aabcba6e03ca081a508c3ac9aff1451c
 2025-01-20 21:37:23 +01:00
Ricardo Wurmus
d86e890ae6 gnu: python-platformdirs: Update to 4.3.6. 
* gnu/packages/python-xyz.scm (python-platformdirs): Update to 4.3.6.

Change-Id: I467128079d97a1687103446ac7260cc8cf3ab221
 2025-01-20 21:37:22 +01:00
Ricardo Wurmus
465bc59251 gnu: python-chardet: Update to 5.2.0. 
* gnu/packages/python-xyz.scm (python-chardet): Update to 5.2.0.

Change-Id: Icc734f848c79eea2b775c7402793ede9a25ebc85
 2025-01-20 21:37:22 +01:00
Ricardo Wurmus
1df38c9e7b gnu: python-colorama: Update to 0.4.6. 
* gnu/packages/python-xyz.scm (python-colorama): Update to 0.4.6.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-hatchling and python-pytest.

Change-Id: Ifdc20a9dc2a3f21ac59aaaa88fd90abe926595a0
 2025-01-20 21:37:22 +01:00
Ricardo Wurmus
3121dd2245 gnu: python-extension-helpers: Update to 1.2.0. 
* gnu/packages/python-xyz.scm (python-extension-helpers): Update to 1.2.0.
[arguments]: Disable broken test.

Change-Id: I3a99240c52fc8114b6eb4d7c3e6642530cf7d756
 2025-01-20 21:37:22 +01:00
Ricardo Wurmus
1d8c1b7bf1 gnu: python-py2bit: Use pyproject-build-system. 
* gnu/packages/bioinformatics.scm (python-py2bit)[build-system]: Use
pyproject-build-system.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I6f66e5f3c0f7612f460e2a6fa931b4c456db6a1b
 2025-01-20 21:37:22 +01:00
Ricardo Wurmus
6fa324e355 gnu: python-biom-format: Use pyproject-build-system. 
* gnu/packages/bioinformatics.scm (python-biom-format)[build-system]: Use
pyproject-build-system.
[arguments]: Replace phase 'disable-broken-tests with #:test-flags; enable one
test; add phase 'build-extensions.
[native-inputs]: Remove python-nose.

Change-Id: I8399d9b05bdb6da89d8056d536ab7e25dc22f9c2
 2025-01-20 21:37:22 +01:00
Ricardo Wurmus
89246206f0 gnu: python-webcolors: Update to 24.11.1. 
* gnu/packages/python-web.scm (python-webcolors): Update to 24.11.1.
[build-system]: Use pyproject-build-system.
[arguments]: Add phase 'patch-pyproject; remove custom 'check phase.
[native-inputs]: Add python-pdm-backend.

Change-Id: Ifcc947d08a369dfafa6f0e0eed473bc6e372ccd6
 2025-01-20 21:37:22 +01:00
Ricardo Wurmus
202a29e787 gnu: python-tox: Update to 4.23.2. 
* gnu/packages/python-check.scm (python-tox): Update to 4.23.2.
[build-system]: Use pyproject-build-system.
[arguments]: Update list of disabled tests; remove custom 'check phase; add
phase 'virtualenv-compatibility.
[propagated-inputs]: Add python-typing-extensions; remove python-py and
python-six.
[native-inputs]: Add python-devpi-process, python-time-machine, and
python-wheel; remove python-distlib.

Change-Id: I7390ad0f31bf6536227081e55790b6592b3e7c81
 2025-01-20 21:37:22 +01:00
Ricardo Wurmus
c8faef4ac7 gnu: Add python-devpi-process. 
* gnu/packages/python-web.scm (python-devpi-process): New variable.

Change-Id: Ic1829dfbb108a45c44423f570eeb604ddfe73795
 2025-01-20 21:37:22 +01:00
Ricardo Wurmus
7c12505657 gnu: Add python-devpi-client. 
* gnu/packages/python-web.scm (python-devpi-client): New variable.

Change-Id: I29e0e3b573111d39b93d595cb7a49c588f5ac99a
 2025-01-20 21:37:22 +01:00
Ricardo Wurmus
5024f061e4 gnu: Add python-devpi-server. 
* gnu/packages/python-web.scm (python-devpi-server): New variable.

Change-Id: I5ca0e39595f2081f4a71bc0bc71106cac1508ce4
 2025-01-20 21:37:22 +01:00