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50db9628fc6ef0a21fcd9d87c8c1f1b7de856413
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163476 Commits

Author SHA1 Message Date
Ricardo Wurmus
50db9628fc gnu: r-sfsmisc: Update to 1.1-23. 
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-23.
[properties]: Record updater-extra-propagated-inputs.

Change-Id: Ifa7d0da30f3afa2441e41d1d16f7784254e0cf98
 2025-11-29 12:21:31 +01:00
Ricardo Wurmus
8e2a59ead2 gnu: r-qs2: Update to 0.1.6. 
* gnu/packages/cran.scm (r-qs2): Update to 0.1.6.

Change-Id: Ib8c78aa0c39a3d11b386a64a94ab354fbfa8632d
 2025-11-29 12:21:31 +01:00
Ricardo Wurmus
e82d807f1c gnu: r-selectr: Update to 0.5-0. 
* gnu/packages/cran.scm (r-selectr): Update to 0.5-0.
[properties]: Remove.

Change-Id: I42fe2da37ddf9a678806db9b1a0d34c5e072fb51
 2025-11-29 12:21:31 +01:00
Ricardo Wurmus
519a57ba60 gnu: r-tximeta: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.28.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.
[native-inputs]: Add r-rmarkdown.

Change-Id: I3dbc7b55c46db5ce0d39b8e107ac0aa58a25c71c
 2025-11-29 12:21:31 +01:00
Ricardo Wurmus
63462c07a3 gnu: r-tricycle: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.18.0.

Change-Id: Ie2c729a6cdf6660349b4b5ea1d32195769cf2a04
 2025-11-29 12:21:31 +01:00
Ricardo Wurmus
950b72b066 gnu: r-tcgabiolinks: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.38.0.

Change-Id: Ifb06afbef1835e405fd4bbec07e2de48401c432a
 2025-11-29 12:21:30 +01:00
Ricardo Wurmus
c3c37b84b8 gnu: r-biscuiteer: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.24.0.

Change-Id: Ia714803c395f6e79aad4b3aa837dcaa944b83077
 2025-11-29 12:21:30 +01:00
Ricardo Wurmus
c8ddd5a8cf gnu: r-omicade4: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.50.0.

Change-Id: Ia9a2b0ba52c2845f355476211a57690d81cdfa51
 2025-11-29 12:21:30 +01:00
Ricardo Wurmus
830314ef8a gnu: r-dmrseq: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.30.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: Id0f5d693c9aeeff1c185e50745655db214f834af
 2025-11-29 12:21:30 +01:00
Ricardo Wurmus
10543af612 gnu: r-dada2: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.38.0.

Change-Id: Id7bac2a2338c32f1df0f2387730f799bce257478
 2025-11-29 12:21:30 +01:00
Ricardo Wurmus
1360407283 gnu: r-biotmle: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.34.0.

Change-Id: I657e29e63ca5bcbe17bb7cbdaca90c22ca5a8a2d
 2025-11-29 12:21:30 +01:00
Ricardo Wurmus
f58601d80a gnu: r-biotip: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.24.0.
[propagated-inputs]: Add r-doparallel and r-foreach.

Change-Id: Ic00cb277d88865b12b102646e08f0b06842aef5d
 2025-11-29 12:21:30 +01:00
Ricardo Wurmus
93c5b348cf gnu: r-bioqc: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.38.0.

Change-Id: Ib1601aa589c01e3c785085cbd12aebe2f53868a4
 2025-11-29 12:21:30 +01:00
Ricardo Wurmus
b32387c382 gnu: r-bionet: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.70.0.

Change-Id: Ie2af094202600dd4f3bbd1f72dad634a3012e6cf
 2025-11-29 12:21:30 +01:00
Ricardo Wurmus
766e19ead8 gnu: r-bionero: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.18.0.

Change-Id: I9fecc02d585a01a4e0f4680a7d894552fa636fac
 2025-11-29 12:21:29 +01:00
Ricardo Wurmus
e736705c10 gnu: r-biomvrcns: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.50.0.

Change-Id: I2078e79b53c84f8db1687f5f684b210532676c3d
 2025-11-29 12:21:29 +01:00
Ricardo Wurmus
33783c23ae gnu: r-biomvcclass: Update to 1.78.0. 
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.78.0.

Change-Id: I51769afac79202a5b1754c40f0ec7af27890a5a1
 2025-11-29 12:21:29 +01:00
Ricardo Wurmus
851f169fc7 gnu: r-mvcclass: Update to 1.84.0. 
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.84.0.

Change-Id: I637a75af2138be3119ae851c4e002881b59a321c
 2025-11-29 12:21:29 +01:00
Ricardo Wurmus
70871e17b3 gnu: r-biodb: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.18.0.
[propagated-inputs]: Remove r-biocfilecache, r-git2r, and r-rcurl; add r-fscache,
r-sched, and r-sqlq.

Change-Id: I9441495e575556a6f007fd23e69fdd0d5ac3d86a
 2025-11-29 12:21:29 +01:00
Ricardo Wurmus
d212a4534c gnu: r-biocthis: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.20.0.

Change-Id: Iaa511a72456a934ed4263c336acebfd4c896c081
 2025-11-29 12:21:29 +01:00
Ricardo Wurmus
473cd02dd9 gnu: r-bcrank: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-bcrank): Update to 1.72.0.

Change-Id: Ib2402233a1e4a4a38ab91af4aaae1dffc0a66f1d
 2025-11-29 12:21:29 +01:00
Ricardo Wurmus
fdea6ced03 gnu: r-bbcanalyzer: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-bbcanalyzer): Update to 1.40.0.

Change-Id: I33d0ae51975f8d118393515dfd2088064040ef21
 2025-11-29 12:21:29 +01:00
Ricardo Wurmus
b346fc99c0 gnu: r-baynorm: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-baynorm): Update to 1.28.0.

Change-Id: I55392f25d824c3e3b9dd8bcfc7dd0b974f2210d1
 2025-11-29 12:21:28 +01:00
Ricardo Wurmus
57eb7719c6 gnu: r-bayesspace: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-bayesspace): Update to 1.20.0.

Change-Id: I4355a9d2088a0d5c13a35bee185eff5a27c12df0
 2025-11-29 12:21:28 +01:00
Ricardo Wurmus
3f617d9740 gnu: r-bayesknockdown: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-bayesknockdown): Update to 1.36.0.

Change-Id: I5ee4f7dc727ce5c6cfdd1f98154aba4751c1876a
 2025-11-29 12:21:28 +01:00
Ricardo Wurmus
0d3be6072d gnu: r-basilisk: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.22.0.
[propagated-inputs]: Remove r-basilisk-utils.

Change-Id: I7dfbf1e25b013cce8995f3587ecc26886e0d32cb
 2025-11-29 12:21:28 +01:00
Ricardo Wurmus
2ddcaae239 gnu: r-basicstarrseq: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-basicstarrseq): Update to 1.38.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: Id98466077a935a0f1d4a0d8c0912be870af02722
 2025-11-29 12:21:28 +01:00
Ricardo Wurmus
ee72d162d4 gnu: r-basics: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-basics): Update to 2.22.0.

Change-Id: If8a7b3ebf180ea8ad43bfb4c72d00072aa13e484
 2025-11-29 12:21:28 +01:00
Ricardo Wurmus
39425581fc gnu: r-basic4cseq: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-basic4cseq): Update to 1.46.0.

Change-Id: Ib49f7a36f43aebfd4f9942a4b14f607b48b4e3fa
 2025-11-29 12:21:28 +01:00
Ricardo Wurmus
a67efdfbcb gnu: r-dir-expiry: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.18.0.

Change-Id: I57b0d126c4801c909c21db69456b325f49d6d05d
 2025-11-29 12:21:28 +01:00
Ricardo Wurmus
1dd3d45e78 gnu: r-genetclassifier: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.50.0.

Change-Id: I691aad53e5b39755a2e169879246a431cf2a2b0d
 2025-11-29 12:21:28 +01:00
Ricardo Wurmus
088304d2f8 gnu: r-minet: Update to 3.68.0. 
* gnu/packages/bioconductor.scm (r-minet): Update to 3.68.0.

Change-Id: Ib5276a348354e55e1a49b0ab69b8100f3b6fb6f3
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
bc0b1a3145 gnu: r-biobtreer: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.22.0.

Change-Id: I9815a45242d0d535db0c6e7f89fb31baa2762fee
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
03a7812a8d gnu: r-bgeedb: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.36.0.

Change-Id: Ia3078cd0f9ad9f3ddbab915b2bb9744515c7fb42
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
9c6512c77e gnu: r-bgeecall: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.26.0.
[propagated-inputs]: Remove r-biomart; add r-annotationdbi, r-curl, r-ggplot2, r-iranges,
r-rcurl, r-readr, r-rsqlite, r-scales, r-spatstat-univar, and
r-stringr.

Change-Id: I7e4d779eb12bbbd69578c096053bd3dd4f6f74d9
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
0d5bd5b048 gnu: r-beclear: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.26.0.

Change-Id: Ie072dc1d744a01b1c97cd74b1d072f63a736f6b7
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
f55f7add71 gnu: r-megadepth: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.20.0.

Change-Id: Ie818451b75635a4117ffdd108fcfb6adb94157a4
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
379e68afb4 gnu: r-guitar: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.26.0.

Change-Id: I6e0c1f76b74b7c2c9d5afbedf3b9a3a89a32a38a
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
d075f5fe3f gnu: r-snpstats: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.60.0.
[propagated-inputs]: Remove r-zlibbioc.

Change-Id: Id163a74bef1d4cf3b97d6208ce3c06f5e07daf54
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
b114962042 gnu: r-snprelate: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-snprelate): Update to 1.44.0.
[propagated-inputs]: Add r-rhpcblasctl.

Change-Id: Ibb62c4e7f3063a8334ec1abaf9924907770e9d8c
 2025-11-29 12:21:27 +01:00
Ricardo Wurmus
3eda99f186 gnu: r-pathview: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.50.0.

Change-Id: I0dc8aebb3150ecece39526eb95e4dd617115439b
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
f9e2f26f43 gnu: r-parody: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-parody): Update to 1.68.0.

Change-Id: I37e116daa9446468d1206878bee9f14e46fb820f
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
ea86c510d2 gnu: r-ldblock: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.40.0.
[propagated-inputs]: Add r-seqinfo.

Change-Id: Idcc9a341377c8fb23f208fe26f471c7ece17a649
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
066270af1e gnu: r-kegggraph: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.70.0.

Change-Id: If3f34e5b444e15afb8583aee5f0cb9fca3699533
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
e74755b6f1 gnu: r-gwastools: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-gwastools): Update to 1.56.0.

Change-Id: I1a8ac73babb7ce5e0fe654c4fb17445c952f9c6a
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
f114fbaf5f gnu: r-gwascat: Update to 2.42.0. 
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.42.0.
[propagated-inputs]: Add r-seqinfo.

Change-Id: I3be0520167579fadee07647ae232cf42a9ff63cc
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
7201a66cb3 gnu: r-gviz: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.54.0.
[propagated-inputs]: Add r-seqinfo.

Change-Id: I43be1c05a4112bfb7957ae9bad6ca76aa11a0f9e
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
03fb8b030f gnu: r-ggbio: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.58.0.
[propagated-inputs]: Remove r-ggally; add r-seqinfo.

Change-Id: If8b4eb53b8c3568cc225e4ce73af41c0b0217f20
 2025-11-29 12:21:26 +01:00
Ricardo Wurmus
ccf77ddf07 gnu: r-catalyst: Update to 1.34.1. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.34.1.

Change-Id: I8f9e7fb3c0a664ad8f9a306455df1ab76fdf7a91
 2025-11-29 12:21:25 +01:00
Ricardo Wurmus
b41b9d1c4d gnu: r-msmstests: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.48.0.

Change-Id: I4a83db3c7580880db4c6e2539959ffb48e0fe32c
 2025-11-29 12:21:25 +01:00