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163476 Commits

Author SHA1 Message Date
Ricardo Wurmus ab84a7429b gnu: r-biosigner: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.38.0.

Change-Id: If17c8b8a84d79b351fd780acceafc1010758d391
 2025-11-29 12:21:14 +01:00
Ricardo Wurmus c28de91b71 gnu: r-ropls: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.42.0.

Change-Id: I5428863c9a5edd0e01b9bbb3fc940a5f7b1837b2
 2025-11-29 12:21:14 +01:00
Ricardo Wurmus 34bcbd950c gnu: r-multidataset: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.38.0.

Change-Id: Ib1ebefe5ff39d6e6466f2495d28ce9bb5ca4b483
 2025-11-29 12:21:13 +01:00
Ricardo Wurmus bfdad169dd gnu: r-rqc: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-rqc): Update to 1.44.0.

Change-Id: I914d96dc001a394c8a75e55dc4595c112c306d2b
 2025-11-29 12:21:13 +01:00
Ricardo Wurmus 98d6af94b8 gnu: r-quasr: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-quasr): Update to 1.50.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I275600b70ac206e39754cac234505efc065f2491
 2025-11-29 12:21:13 +01:00
Ricardo Wurmus 5b6778251f gnu: r-rhisat2: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-rhisat2): Update to 1.26.0.

Change-Id: I1e064c72f89ff4281145c42a5f08491248b1ea3d
 2025-11-29 12:21:13 +01:00
Ricardo Wurmus 01f25e3fcf gnu: r-sgseq: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-sgseq): Update to 1.44.0.
[propagated-inputs]: Add r-seqinfo.

Change-Id: Ic81dc2d263db3731664d0969ed771bafc138b468
 2025-11-29 12:21:13 +01:00
Ricardo Wurmus 9c10f14c7c gnu: r-rbowtie: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-rbowtie): Update to 1.50.0.

Change-Id: Ic87d9b8ff4462273972ba058c117c05d11054561
 2025-11-29 12:21:13 +01:00
Ricardo Wurmus 46017c4c47 gnu: r-iclusterplus: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-iclusterplus): Update to 1.46.0.

Change-Id: I25c42d6c1e1f74afc46a683dd4ee57d00b2fc387
 2025-11-29 12:21:13 +01:00
Ricardo Wurmus 2381c8aecb gnu: r-biocfilecache: Update to 3.0.0. 
* gnu/packages/bioconductor.scm (r-biocfilecache): Update to 3.0.0.
[propagated-inputs]: Remove r-httr; add r-httr2.

Change-Id: Icad0d8e7373643ca319c7081489a11f1470ca0fd
 2025-11-29 12:21:13 +01:00
Ricardo Wurmus f950b9dbef gnu: r-arrmnormalization: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-arrmnormalization): Update to 1.50.0.

Change-Id: I66f732c762d6e9c3ba5ebc7e0a062ebb77ed6aff
 2025-11-29 12:21:13 +01:00
Ricardo Wurmus 9263d5ad28 gnu: r-progeny: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-progeny): Update to 1.32.0.

Change-Id: I095869a106f7f637c1a9bdf721814e91ce2932f6
 2025-11-29 12:21:12 +01:00
Ricardo Wurmus 0860440b31 gnu: r-rbowtie2: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-rbowtie2): Update to 2.16.0.

Change-Id: Idf2c7d96ed219de585343c063f1a177136082be5
 2025-11-29 12:21:12 +01:00
Ricardo Wurmus eb521b1828 gnu: r-zfpkm: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-zfpkm): Update to 1.32.0.

Change-Id: I115170b823ce95db97c8eb83cfb8862a34602c2d
 2025-11-29 12:21:12 +01:00
Ricardo Wurmus 98182abe01 gnu: r-zinbwave: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.32.0.

Change-Id: Ia0c2ffa6ce21cea1ba34bed247a062d4fec6f378
 2025-11-29 12:21:12 +01:00
Ricardo Wurmus fff41b13ed gnu: r-webbioc: Update to 1.82.0. 
* gnu/packages/bioconductor.scm (r-webbioc): Update to 1.82.0.

Change-Id: If9962622cd9cb66c53945072f65ab4ba94e46386
 2025-11-29 12:21:12 +01:00
Ricardo Wurmus 46c6f73156 gnu: r-widgettools: Update to 1.88.0. 
* gnu/packages/bioconductor.scm (r-widgettools): Update to 1.88.0.

Change-Id: I96414040653d43791de26174fbf29492961e5fc7
 2025-11-29 12:21:12 +01:00
Ricardo Wurmus 42857275a9 gnu: r-wiggleplotr: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-wiggleplotr): Update to 1.34.0.

Change-Id: I17a0bb515fa95f588d898019c5d4a3a7b32055e1
 2025-11-29 12:21:12 +01:00
Ricardo Wurmus 1cf9b69523 gnu: r-wrench: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-wrench): Update to 1.28.0.

Change-Id: I3fc0dde0cae947eb62a472e32b0706cfb76e61e0
 2025-11-29 12:21:12 +01:00
Ricardo Wurmus 9ae4c7f035 gnu: r-xcms: Update to 4.8.0. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.8.0.
[propagated-inputs]: Add r-data-table.
[native-inputs]: Add r-rhdf5.

Change-Id: Icddb002bc87f1bb5c685241ab014422329cd8e7c
 2025-11-29 12:21:12 +01:00
Ricardo Wurmus 1277ab018c gnu: r-massspecwavelet: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-massspecwavelet): Update to 1.76.0.

Change-Id: I05c3582817833856416b0899dc905ee30851976b
 2025-11-29 12:21:11 +01:00
Ricardo Wurmus 359c2e05f0 gnu: r-roar: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-roar): Update to 1.46.0.

Change-Id: If1cec3d60a055846a59b3900499a824e8433a781
 2025-11-29 12:21:11 +01:00
Ricardo Wurmus aea400b35d gnu: r-yarn: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.36.0.

Change-Id: I3cebb1bc1a995a31299dbcd36b6801aea5aa4571
 2025-11-29 12:21:11 +01:00
Ricardo Wurmus b3b0286d35 gnu: r-quantro: Update to 1.44.0. 
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.44.0.

Change-Id: Id220924f6d997cb03aa0d18e43cf08888d8ffd9d
 2025-11-29 12:21:11 +01:00
Ricardo Wurmus 1b84e983af gnu: r-gcrma: Update to 2.82.0. 
* gnu/packages/bioconductor.scm (r-gcrma): Update to 2.82.0.

Change-Id: Ief7bd8fc597f715aad6825390b739a31c2e04272
 2025-11-29 12:21:11 +01:00
Ricardo Wurmus 2eb4c881d4 gnu: r-yapsa: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.36.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I41b17063b34b3ae224ec6bd06b3f946863ab644c
 2025-11-29 12:21:11 +01:00
Ricardo Wurmus e4d11a2023 gnu: r-somaticsignatures: Update to 2.46.0. 
* gnu/packages/bioconductor.scm (r-somaticsignatures): Update to 2.46.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I4a29c04b90b67c9fcf8251307018dda3d561ab59
 2025-11-29 12:21:11 +01:00
Ricardo Wurmus 00c03118ac gnu: r-gtrellis: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-gtrellis): Update to 1.42.0.

Change-Id: I33a644c595320cbee4178e6adde25658817a3b81
 2025-11-29 12:21:11 +01:00
Ricardo Wurmus 6c78345785 gnu: r-yamss: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-yamss): Update to 1.36.0.

Change-Id: I7fdae73deeadeb91934763f89b6ce4023a1e72f9
 2025-11-29 12:21:10 +01:00
Ricardo Wurmus 032c415c8e gnu: r-ebimage: Update to 4.52.0. 
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.52.0.

Change-Id: I53d7f178083ea37636672267b9dc0fdcd58bc9ca
 2025-11-29 12:21:10 +01:00
Ricardo Wurmus 6ec5191db1 gnu: r-aucell: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.32.0.

Change-Id: Ic08bdb4ddd866c64f54f2bb418d432cf06e29886
 2025-11-29 12:21:10 +01:00
Ricardo Wurmus 6209863d3d gnu: r-allelicimbalance: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.48.0.

Change-Id: Ib2d4892f6deec76670e32cfd0da14ec07a89ccc9
 2025-11-29 12:21:10 +01:00
Ricardo Wurmus b7910e08f7 gnu: r-annotationtools: Update to 1.84.0. 
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.84.0.

Change-Id: I4f243f8116696c5c035f857a1169b090bf249ff1
 2025-11-29 12:21:10 +01:00
Ricardo Wurmus f0207e737f gnu: r-gofuncr: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.30.0.

Change-Id: I08f3f4c0c09737fa9a963196a91baea0c51e65af
 2025-11-29 12:21:10 +01:00
Ricardo Wurmus fa60955eb6 gnu: r-atacseqqc: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.34.0.

Change-Id: I2e7b222f4f90fac274b26fce352aa2e97eff5b2b
 2025-11-29 12:21:10 +01:00
Ricardo Wurmus f01c1a4641 gnu: r-genomicstate: Update to 0.99.17. 
* gnu/packages/bioconductor.scm (r-genomicstate): Update to 0.99.17.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: Iab275348dcf30d77fde09877f4e5fdc933c5907a
 2025-11-29 12:21:10 +01:00
Ricardo Wurmus 08a5cf9ca5 gnu: r-genomicscores: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.22.0.
[propagated-inputs]: Add r-seqinfo.

Change-Id: Ic0e4b2948a8685bb23b24f682c21f738e9aa5ab3
 2025-11-29 12:21:10 +01:00
Ricardo Wurmus 6ac6236cbd gnu: r-motifstack: Update to 1.54.0. 
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.54.0.

Change-Id: I3ef1848062b52ed35b9c823cb37590095d583580
 2025-11-29 12:21:09 +01:00
Ricardo Wurmus fdb61b51e9 gnu: r-motifbreakr: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.24.0.

Change-Id: I9110cfdfecbc91ce68a5e47e843ff39d3eeb81fb
 2025-11-29 12:21:09 +01:00
Ricardo Wurmus aa377b2ea7 gnu: r-motifdb: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-motifdb): Update to 1.52.0.

Change-Id: Ie56cb85ed04ac90d235110d4306129b8053ed728
 2025-11-29 12:21:09 +01:00
Ricardo Wurmus 6dcc83da2b gnu: r-bacon: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.38.0.

Change-Id: I60e2f4ae47cda17e2c919ca6a1de84602a31195c
 2025-11-29 12:21:09 +01:00
Ricardo Wurmus c4bac25dff gnu: r-abseqr: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.28.0.

Change-Id: I12e9c93f8faa711082d3fdc6415199afcbbeb768
 2025-11-29 12:21:09 +01:00
Ricardo Wurmus 764be589aa gnu: r-a4: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-a4): Update to 1.58.0.

Change-Id: I373a0d5af9d3f092b53f3c53f0ddd8bd399aa2c2
 2025-11-29 12:21:09 +01:00
Ricardo Wurmus 9737af1c9d gnu: r-a4base: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.58.0.

Change-Id: Icc5055f2ec370a05a3a5d592e6075aa83c3cb9bb
 2025-11-29 12:21:09 +01:00
Ricardo Wurmus 6e0dcebabd gnu: r-a4reporting: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.58.0.

Change-Id: I8d34bb489c634711b4681a9dbef5a537a198ef46
 2025-11-29 12:21:09 +01:00
Ricardo Wurmus 133a6ac469 gnu: r-a4preproc: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.58.0.

Change-Id: I0e44f610d2d21fe45a31f3c9d069921e42ad63d9
 2025-11-29 12:21:08 +01:00
Ricardo Wurmus 8e38519541 gnu: r-a4classif: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.58.0.

Change-Id: I5a91e95023c800aed2258af45d4146f43739f47f
 2025-11-29 12:21:08 +01:00
Ricardo Wurmus 9df122e080 gnu: r-a4core: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.58.0.

Change-Id: Ie5e1ba9ae57f2e04e20dbf2ce02007cec51c4f1f
 2025-11-29 12:21:08 +01:00
Ricardo Wurmus 000042b8d1 gnu: r-annaffy: Update to 1.82.0. 
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.82.0.

Change-Id: Icb48fbffaea92319b794e772a092c5589dde1633
 2025-11-29 12:21:08 +01:00
Ricardo Wurmus d36b275212 gnu: r-mlinterfaces: Update to 1.90.0. 
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.90.0.

Change-Id: I35afdcce9ecd1bfed4f3c104c7f5a89506479025
 2025-11-29 12:21:08 +01:00