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Author SHA1 Message Date
Ricardo Wurmus
56e8a87a7b gnu: r-datawizard: Replace custom phase with #:skipped-tests. 
* gnu/packages/cran.scm (r-datawizard)[arguments]: Remove phase
'disable-bad-tests; provide #:skipped-tests argument.

Change-Id: I9f4d5654db714d4bddc295ad3dd51b39b1b4f6d2
 2026-03-07 11:57:25 +01:00
Ricardo Wurmus
63ede74078 gnu: r-ggdist: Replace custom phase with #:skipped-tests. 
* gnu/packages/cran.scm (r-ggdist)[arguments]: Remove phase
'skip-bad-tests; provide #:skipped-tests argument.

Change-Id: I43dd35d5d311e0865ff24163f8bfe39ae1cc24e2
 2026-03-07 11:57:25 +01:00
Ricardo Wurmus
1550831eba gnu: r-tailor: Replace custom phase with #:skipped-tests. 
* gnu/packages/cran.scm (r-tailor)[arguments]: Remove phase
'skip-bad-tests; provide #:skipped-tests argument.

Change-Id: Ie28578f001f94c32d74a98f0ce894b929f434fc3
 2026-03-07 11:57:25 +01:00
Ricardo Wurmus
4498ca3ad5 gnu: r-vcr: Replace custom phase with #:skipped-tests. 
* gnu/packages/cran.scm (r-vcr)[arguments]: Remove phase
'skip-bad-tests; provide #:skipped-tests argument.

Change-Id: I0bd95ae77067017207a678a6de7f0772f2d6964b
 2026-03-07 11:57:25 +01:00
Ricardo Wurmus
820ebc0350 gnu: r-readr: Replace custom phase with #:skipped-tests. 
* gnu/packages/cran.scm (r-readr)[arguments]: Remove phase
'disable-bad-tests; provide #:skipped-tests argument.

Change-Id: Ifd97b884fee6d4b210b2e890e2002241b6cae8c3
 2026-03-07 11:57:25 +01:00
Ricardo Wurmus
ff26db7570 gnu: r-gfonts: Replace custom phase with #:skipped-tests. 
* gnu/packages/cran.scm (r-gfonts)[arguments]: Remove phase
'delete-bad-tests; provide #:skipped-tests argument.

Change-Id: Iaff7861fac6c56581f41bdcf72c02469bc373ce5
 2026-03-07 11:57:25 +01:00
Ricardo Wurmus
850f39a1a2 gnu: r-cutpointr: Replace custom phase with #:skipped-tests. 
* gnu/packages/cran.scm (r-cutpointr)[arguments]: Remove phase
'delete-bad-tests; provide #:skipped-tests argument.

Change-Id: I72f94b36aaedfd29a2943024f6056dcd17008e8e
 2026-03-07 11:57:25 +01:00
Ricardo Wurmus
2a9edf766c gnu: r-httr2: Replace custom phase with #:skipped-tests. 
* gnu/packages/cran.scm (r-httr2)[arguments]: Remove phase 'delete-bad-tests;
provide #:skipped-tests argument.

Change-Id: Ia505859fcb989980e0a09574b96342affb1929e6
 2026-03-07 11:57:25 +01:00
Ricardo Wurmus
b89d732d11 build-system/r: Add build phase to skip tests. 
* guix/build-system/r.scm (r-build): Pass TEST-DIRECTORY and SKIPPED-TESTS.
* guix/build/r-build-system.scm (patch-tests): New procedure.
(%standard-phases): Add it.

Change-Id: I7abcd25260f5f55a342899371f4276306c911abe
 2026-03-07 11:57:24 +01:00
Ricardo Wurmus
c87d544fab gnu: r-biomart: Update to 2.66.1. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.66.1.

Change-Id: I7b44de4ba1bb980ca4c6de8b774f8652bbc3df17
 2026-03-07 11:57:24 +01:00
Ricardo Wurmus
0a9c3f1338 gnu: r-animalcules: Update to 1.26.1. 
* gnu/packages/bioconductor.scm (r-animalcules): Update to 1.26.1.

Change-Id: I57738b1fec6dc5b393a6f26fc87cf9e0ea1f6f76
 2026-03-07 11:57:24 +01:00
Ricardo Wurmus
d2c5f0fd59 import/cran: Uniquify inputs. 
* guix/import/cran.scm (cran-package-inputs): Deduplicate inputs from
different sources.

Change-Id: I4547c9645f2722b451e003db2b87a77f6f4d304d
 2026-03-07 11:57:24 +01:00
Ricardo Wurmus
647958d69a import/cran: Use sets instead of lset-union. 
* guix/import/cran.scm (cran-package-propagated-inputs): Replace lset-union
with actual sets, because the former does not remove duplicates of its
arguments.

Change-Id: I84c57c2426aef656bdd20e30e65b510e27603a64
 2026-03-07 11:57:24 +01:00
Ricardo Wurmus
34df487128 gnu: r-cytoml: Update list of ignored native inputs. 
* gnu/packages/bioconductor.scm (r-cytoml)[properties]: Update
updater-extra-native-inputs.

Change-Id: Iac49c82eb7321c1488ed4737794fa3dee1197215
 2026-03-07 11:57:24 +01:00
Ricardo Wurmus
ee0a9f27b9 import/cran: Fix import of packages in single quotes. 
* guix/import/cran.scm (import-pattern): Also match on single quotes.
(needed-vignettes-inputs-in-directory): Use EXTRACT-IMPORTS.
* tests/import/cran.scm: Add test.

Change-Id: Ie69027992519bd8d886860346f4a359514d8e822
 2026-03-07 11:57:24 +01:00
Ricardo Wurmus
c2a92688a9 gnu: r-tsne: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-tsne): Move from here...
* gnu/packages/cran.scm (r-tsne): ...to here.

Change-Id: I50f0b37af9c894e738ebe56726f70a563f1b9ec0
 2026-03-07 11:57:24 +01:00
Ricardo Wurmus
4ca3126412 gnu: r-trimcluster: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-trimcluster): Move from here...
* gnu/packages/cran.scm (r-trimcluster): ...to here.

Change-Id: I353868527c835623fd18ff6123f2b4234284f7d2
 2026-03-07 11:57:24 +01:00
Ricardo Wurmus
c9942b9c85 gnu: r-tmvnsim: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-tmvnsim): Move from here...
* gnu/packages/cran.scm (r-tmvnsim): ...to here.

Change-Id: I57b54ad1ff2db25e3dcfa5711110fb79baa59e81
 2026-03-07 11:57:23 +01:00
Ricardo Wurmus
2283d0f242 gnu: r-tidyselect: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-tidyselect): Move from here...
* gnu/packages/cran.scm (r-tidyselect): ...to here.

Change-Id: I4c38afa9a6bb029c2fdd6bd142d8a9e0c5d881f8
 2026-03-07 11:57:23 +01:00
Ricardo Wurmus
8662f4fbca gnu: r-tidyr: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-tidyr): Move from here...
* gnu/packages/cran.scm (r-tidyr): ...to here.

Change-Id: Ief68dbda79958e88c9d25a6c2fe79b5d0094eb94
 2026-03-07 11:57:23 +01:00
Ricardo Wurmus
b0ff234c69 gnu: r-tibble: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-tibble): Move from here...
* gnu/packages/cran.scm (r-tibble): ...to here.

Change-Id: I1f37fdca754c850cbb180d2c39b3d94d45b00a19
 2026-03-07 11:57:23 +01:00
Ricardo Wurmus
782f6f1fab gnu: r-testthat: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-testthat): Move from here...
* gnu/packages/cran.scm (r-testthat): ...to here.

Change-Id: Ie9ba24c0eb48f284c5d82fb0a0d0eabaee3d34ea
 2026-03-07 11:57:23 +01:00
Ricardo Wurmus
aab3612f8d gnu: r-tclust: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-tclust): Move from here...
* gnu/packages/cran.scm (r-tclust): ...to here.

Change-Id: Ic9e03d1bd07792cf0c8568dc9bb25fcab95da8fb
 2026-03-07 11:57:23 +01:00
Ricardo Wurmus
57e31e46c3 gnu: r-synchronicity: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-synchronicity): Move from here...
* gnu/packages/cran.scm (r-synchronicity): ...to here.

Change-Id: I5cf0a6327186e4b7f9f50c01c0900017090d7f6d
 2026-03-07 11:57:23 +01:00
Ricardo Wurmus
57d805506d gnu: r-statmod: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-statmod): Move from here...
* gnu/packages/cran.scm (r-statmod): ...to here.

Change-Id: I85e1af6c05d243b0f29cb5befc5f871c36e7e78c
 2026-03-07 11:57:23 +01:00
Ricardo Wurmus
8861b359ed gnu: r-sparsem: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-sparsem): Move from here...
* gnu/packages/cran.scm (r-sparsem): ...to here.

Change-Id: I884f50de0b1f6c4d7b398456a91605f80c0dc84e
 2026-03-07 11:57:23 +01:00
Ricardo Wurmus
efea94fa45 gnu: r-sourcetools: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-sourcetools): Move from here...
* gnu/packages/cran.scm (r-sourcetools): ...to here.

Change-Id: I3ab0bcfbca1d1835fa84729d71febab0f1048d85
 2026-03-07 11:57:23 +01:00
Ricardo Wurmus
de5988f5d4 gnu: r-snow: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-snow): Move from here...
* gnu/packages/cran.scm (r-snow): ...to here.

Change-Id: Idec2db0264ae8ce666596be3fa0427568249b591
 2026-03-07 11:57:22 +01:00
Ricardo Wurmus
f82a5e3a0c gnu: r-sn: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-sn): Move from here...
* gnu/packages/cran.scm (r-sn): ...to here.

Change-Id: I53e34aa96c69d861ff72fd89fdae52c7053a8a94
 2026-03-07 11:57:22 +01:00
Ricardo Wurmus
873ab88f39 gnu: r-simr: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-simr): Move from here...
* gnu/packages/cran.scm (r-simr): ...to here.

Change-Id: I2a2a5c700a1177e260fc70a512737114eb32b4f6
 2026-03-07 11:57:22 +01:00
Ricardo Wurmus
461e3feaac gnu: r-sfsmisc: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-sfsmisc): Move from here...
* gnu/packages/cran.scm (r-sfsmisc): ...to here.

Change-Id: Ia11e766e872444e4c4d1f542f609d4555b1503b0
 2026-03-07 11:57:22 +01:00
Ricardo Wurmus
10eae73bc6 gnu: r-segmented: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-segmented): Move from here...
* gnu/packages/cran.scm (r-segmented): ...to here.

Change-Id: I2f4e9adb8c8a6739ecf6a5ff786a71150ca177ff
 2026-03-07 11:57:22 +01:00
Ricardo Wurmus
728222ef7a gnu: r-vpc: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-vpc): Move from here...
* gnu/packages/cran.scm (r-vpc): ...to here.

Change-Id: I76ace8ad2afefc20bf3b6aa6ea0d215b69065a3b
 2026-03-07 11:57:22 +01:00
Ricardo Wurmus
deee09590e gnu: r-rversions: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-rversions): Move from here...
* gnu/packages/cran.scm (r-rversions): ...to here.

Change-Id: I84f1264333cd5750af9c68963b579e988df2458e
 2026-03-07 11:57:22 +01:00
Ricardo Wurmus
45cffdc087 gnu: r-runit: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-runit): Move from here...
* gnu/packages/cran.scm (r-runit): ...to here.

Change-Id: Ibc73a6f5299408ecff5a55a2043f1def973d6a94
 2026-03-07 11:57:22 +01:00
Ricardo Wurmus
559bc2611f gnu: r-rtsne: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-rtsne): Move from here...
* gnu/packages/cran.scm (r-rtsne): ...to here.

Change-Id: If7162c5d2bb248aee907b021e7c7be12142a940d
 2026-03-07 11:57:22 +01:00
Ricardo Wurmus
ef1fbeb61a gnu: r-rstudioapi: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-rstudioapi): Move from here...
* gnu/packages/cran.scm (r-rstudioapi): ...to here.

Change-Id: I3f7861d6978a16fe7946ae15f2908d66388ac53a
 2026-03-07 11:57:22 +01:00
Ricardo Wurmus
30b2838df4 gnu: r-rsqlite: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-rsqlite): Move from here...
* gnu/packages/cran.scm (r-rsqlite): ...to here.

Change-Id: I8124d4d669fbf8199e1b92d1428bd508a87d8a68
 2026-03-07 11:57:21 +01:00
Ricardo Wurmus
7202bcddf2 gnu: r-rrcov: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-rrcov): Move from here...
* gnu/packages/cran.scm (r-rrcov): ...to here.

Change-Id: I6a6ad60b8b74c66433ef8807c2244d70fceb32ef
 2026-03-07 11:57:21 +01:00
Ricardo Wurmus
0666e8f505 gnu: r-rprojroot: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-rprojroot): Move from here...
* gnu/packages/cran.scm (r-rprojroot): ...to here.

Change-Id: I3ff698e25672459ddc8b8d03fef21804d5d7440b
 2026-03-07 11:57:21 +01:00
Ricardo Wurmus
868c846d04 gnu: r-roxygen2: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-roxygen2): Move from here...
* gnu/packages/cran.scm (r-roxygen2): ...to here.

Change-Id: I012394d29596b2f76fd48b3b1894e317b806e3f5
 2026-03-07 11:57:21 +01:00
Ricardo Wurmus
0118332069 gnu: r-rocr: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-rocr): Move from here...
* gnu/packages/cran.scm (r-rocr): ...to here.

Change-Id: I9daabfe049a5dd6c96d09e1cda32f7036fc8d56a
 2026-03-07 11:57:21 +01:00
Ricardo Wurmus
265cca0162 gnu: r-robustbase: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-robustbase): Move from here...
* gnu/packages/cran.scm (r-robustbase): ...to here.

Change-Id: Iad59f6a5cf5e528b88056dc2a3db79b63f6d3f68
 2026-03-07 11:57:21 +01:00
Ricardo Wurmus
508104dc7a gnu: r-robust: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-robust): Move from here...
* gnu/packages/cran.scm (r-robust): ...to here.

Change-Id: I09cdf75bf7f0432dc6d3e91952dc0943903758ab
 2026-03-07 11:57:21 +01:00
Ricardo Wurmus
4134861df1 gnu: r-rngtools: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-rngtools): Move from here...
* gnu/packages/cran.scm (r-rngtools): ...to here.

Change-Id: I2c6db225baa00fb32212e68dbabe405b4352442c
 2026-03-07 11:57:21 +01:00
Ricardo Wurmus
003bc33069 gnu: r-rmarkdown: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-rmarkdown): Move from here...
* gnu/packages/cran.scm (r-rmarkdown): ...to here.

Change-Id: I2e1af52f25378236c1fcc0cdffd96e972442c7c2
 2026-03-07 11:57:20 +01:00
Ricardo Wurmus
1ca4675b5d gnu: r-rlrsim: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-rlrsim): Move from here...
* gnu/packages/cran.scm (r-rlrsim): ...to here.

Change-Id: I13fa5af69ebe38ae5f035d0d76eeb0ef1b4518ee
 2026-03-07 11:57:20 +01:00
Ricardo Wurmus
7f92fbe75c gnu: r-rlang: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-rlang): Move from here...
* gnu/packages/cran.scm (r-rlang): ...to here.

Change-Id: Ib6a057009a73e8cdca98501ce3f7c9dce2d14a03
 2026-03-07 11:57:20 +01:00
Ricardo Wurmus
98ef04b635 gnu: r-rematch: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-rematch): Move from here...
* gnu/packages/cran.scm (r-rematch): ...to here.

Change-Id: I7d2253a4f5e4fcfc4bcbbf09fc55a860f8bb2cc7
 2026-03-07 11:57:20 +01:00
Ricardo Wurmus
51bce6f7c7 gnu: r-registry: Move to (gnu packages cran). 
* gnu/packages/statistics.scm (r-registry): Move from here...
* gnu/packages/cran.scm (r-registry): ...to here.

Change-Id: Ibbf5dc09ed976c6b9b52ad00c9cea11954d14127
 2026-03-07 11:57:20 +01:00