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Author SHA1 Message Date
Ricardo Wurmus 60a7a4364d gnu: r-biocthis: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.22.0.

Change-Id: I8bda7567e5e18b23f26a983d9c99623d2d7c5abc
 2026-05-28 12:13:26 +02:00
Ricardo Wurmus 2aa9bc5bdb gnu: r-bcrank: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-bcrank): Update to 1.74.0.

Change-Id: I1d4386670cf754e60b2738aa84377f665660d5f8
 2026-05-28 12:13:26 +02:00
Ricardo Wurmus 3f6b891238 gnu: r-bbcanalyzer: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-bbcanalyzer): Update to 1.42.0.

Change-Id: Ic5080bda0b394038f07423ce21ec6a59cd473b38
 2026-05-28 12:13:26 +02:00
Ricardo Wurmus 5c3a4fa696 gnu: r-baynorm: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-baynorm): Update to 1.30.0.

Change-Id: I72574c7e04f3cae81b0df9f565cccf464bc7b03c
 2026-05-28 12:13:26 +02:00
Ricardo Wurmus 6266a027f6 gnu: r-bayesspace: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-bayesspace): Update to 1.22.0.

Change-Id: If5468bb49deab1d5e7326c5b3fd1447cf2a645a3
 2026-05-28 12:13:25 +02:00
Ricardo Wurmus a21716eb03 gnu: r-bayesknockdown: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-bayesknockdown): Update to 1.38.0.

Change-Id: Ie077615c8f1e3454410bb927525a78df3303ba9b
 2026-05-28 12:13:25 +02:00
Ricardo Wurmus 93e32699fe gnu: r-basilisk: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.24.0.

Change-Id: I5866c704e411ba76f69103c7af9cabdbd0881e4f
 2026-05-28 12:13:25 +02:00
Ricardo Wurmus 55b2f3532a gnu: r-basilisk-utils: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.24.0.

Change-Id: I203917bd82e8b038dce47fa463e8f981bc48f88b
 2026-05-28 12:13:25 +02:00
Ricardo Wurmus 34531c86b0 gnu: r-basicstarrseq: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-basicstarrseq): Update to 1.40.0.

Change-Id: If31582a719484b6e99670cb7618a5e9829028c18
 2026-05-28 12:13:25 +02:00
Ricardo Wurmus 9b5321e151 gnu: r-basics: Update to 2.23.2. 
* gnu/packages/bioconductor.scm (r-basics): Update to 2.23.2.

Change-Id: I299b9dc56ccf1f0f0b0cbd4376087172a557e998
 2026-05-28 12:13:25 +02:00
Ricardo Wurmus c58577793f gnu: r-basic4cseq: Update to 1.47.0. 
* gnu/packages/bioconductor.scm (r-basic4cseq): Update to 1.47.0.

Change-Id: I59d812c8ba306d3a1345cde61b00a11603b86a33
 2026-05-28 12:13:25 +02:00
Ricardo Wurmus 9725af2f08 gnu: r-dir-expiry: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.20.0.

Change-Id: Ic3c30829fb4c632c006654b8684032d7f6899476
 2026-05-28 12:13:25 +02:00
Ricardo Wurmus 9e6dfc0ed9 gnu: r-genetclassifier: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.52.0.
[native-inputs]: Add r-biocmanager.

Change-Id: I91e6baad6f707aac84e65f372dd05ecb7044e1de
 2026-05-28 12:13:24 +02:00
Ricardo Wurmus 6ff5b0369c gnu: r-minet: Update to 3.70.0. 
* gnu/packages/bioconductor.scm (r-minet): Update to 3.70.0.

Change-Id: If95031b1dbc59af8520acf4a85bf8781457de3d8
 2026-05-28 12:13:24 +02:00
Ricardo Wurmus f489374d59 gnu: r-bgeedb: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.38.0.

Change-Id: Ie7aa84bcb601d971714884109411462986155c70
 2026-05-28 12:13:24 +02:00
Ricardo Wurmus 024f754902 gnu: r-beclear: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.28.0.
[propagated-inputs]: Remove r-futile-logger; add r-logger.

Change-Id: I61f82c9a2f9292d49d5ad41b3b4ca25fb164b244
 2026-05-28 12:13:24 +02:00
Ricardo Wurmus bc4a12a2c1 gnu: r-megadepth: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.22.0.

Change-Id: I4bdaaa9cfddf5679e878484c7dc37b7811fdbf7e
 2026-05-28 12:13:24 +02:00
Ricardo Wurmus d1be3364cd gnu: r-ballgown: Update to 2.43.0. 
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.43.0.

Change-Id: Iccfa61fd971c3120e66c004f5bfbf51da6df153a
 2026-05-28 12:13:24 +02:00
Ricardo Wurmus 8c5c0d3df6 gnu: r-guitar: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.28.0.

Change-Id: I1efdaefc38c4cec199fc84272fc9e580935f64f5
 2026-05-28 12:13:24 +02:00
Ricardo Wurmus ae056d417d gnu: r-snprelate: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-snprelate): Update to 1.46.0.

Change-Id: I3616ab0860de8d30738305a7de9c3808dac5336e
 2026-05-28 12:13:24 +02:00
Ricardo Wurmus 1b82ad825e gnu: r-pathview: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.52.0.

Change-Id: Ibab684dafb9cf813a3ca69b6816cf02f402ed5a9
 2026-05-28 12:13:24 +02:00
Ricardo Wurmus 7c5a3878af gnu: r-parody: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-parody): Update to 1.70.0.

Change-Id: Ifc2ae09d015221252446759eea245a63e147df64
 2026-05-28 12:13:23 +02:00
Ricardo Wurmus bdfed4c393 gnu: r-ldblock: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.42.0.

Change-Id: If1ad037f2588e0b8e801b8c055e4fa5ad216f1de
 2026-05-28 12:13:23 +02:00
Ricardo Wurmus f88fdb3137 gnu: r-kegggraph: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.72.0.

Change-Id: If7c8891835c4f58bab765270b2cd288812c3bdad
 2026-05-28 12:13:23 +02:00
Ricardo Wurmus b906046de7 gnu: r-gwastools: Update to 1.58.0. 
* gnu/packages/bioconductor.scm (r-gwastools): Update to 1.58.0.

Change-Id: Ib8262f5de4394d9b566121c0a5915955f3d8632b
 2026-05-28 12:13:23 +02:00
Ricardo Wurmus c3e74910ed gnu: r-gwascat: Update to 2.44.0. 
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.44.0.
[propagated-inputs]: Add r-snpstats.

Change-Id: If5f4e618a168179e8aa35d2358aea1959bbf3aa5
 2026-05-28 12:13:23 +02:00
Ricardo Wurmus 2d3086ade3 gnu: r-gviz: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.56.0.

Change-Id: I4b32aa1fdc066b83b6ba32e1a554c6a3ae6107a7
 2026-05-28 12:13:23 +02:00
Ricardo Wurmus ba30784cb1 gnu: r-ggbio: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.60.0.
[native-inputs]: Add r-biocstyle and r-rcolorbrewer.

Change-Id: Id11ced0d7455984ca91f46f4eaab0b899f1cbfff
 2026-05-28 12:13:23 +02:00
Ricardo Wurmus 1edf490119 gnu: r-catalyst: Update to 1.36.0. 
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.36.0.
[propagated-inputs]: Remove r-data-table and r-purrr.

Change-Id: I8042543a308cd568494d0646c23547a5205689a7
 2026-05-28 12:13:22 +02:00
Ricardo Wurmus 343915eed2 gnu: r-msmstests: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.50.0.

Change-Id: I378d20a86c1f73b125bd05b0d3c1d787f78cee33
 2026-05-28 12:13:22 +02:00
Ricardo Wurmus ccd5379d7b gnu: r-msmseda: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.50.0.

Change-Id: I027280e073141b98746889a588b4998fdb1af561
 2026-05-28 12:13:22 +02:00
Ricardo Wurmus 6d63aeca7f gnu: r-biocio: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.22.0.

Change-Id: I9c7b2d6437ebd5f2b73acf7c4e439b3d96f8c06c
 2026-05-28 12:13:22 +02:00
Ricardo Wurmus da596371a4 gnu: r-msfeatures: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-msfeatures): Update to 1.20.0.

Change-Id: I90898dd895dcf23aa21efa583535a01001d9eb34
 2026-05-28 12:13:22 +02:00
Ricardo Wurmus 7991d0e5a3 gnu: r-delayedmatrixstats: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.34.0.

Change-Id: I0e6a5b59cbc30327a7dc7a0486bc2e1837767bcb
 2026-05-28 12:13:22 +02:00
Ricardo Wurmus 1819bd1cbc gnu: r-spatialexperiment: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-spatialexperiment): Update to 1.22.0.

Change-Id: I5f3e3d1d4ca600dbd99815033aecec6235c37b47
 2026-05-28 12:13:22 +02:00
Ricardo Wurmus 9419a14e62 gnu: r-sparsematrixstats: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.24.0.

Change-Id: Icb0c0e52139882236a78b366828258dac4fa5eba
 2026-05-28 12:13:22 +02:00
Ricardo Wurmus 4b98717384 gnu: r-scran: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.40.0.

Change-Id: I76b0bfba7d2af09cbfff13e4fbac90f3a3310dcb
 2026-05-28 12:13:21 +02:00
Ricardo Wurmus b856d1b28b gnu: r-scater: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-scater): Update to 1.40.0.

Change-Id: I74971e87f9f70de23efd14364810f37221406787
 2026-05-28 12:13:21 +02:00
Ricardo Wurmus d3899855c9 gnu: r-scuttle: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.22.0.
[propagated-inputs]: Add r-assorthead.

Change-Id: I91f9cf5648b99884a96bd3042bc5a1c87f4122d7
 2026-05-28 12:13:21 +02:00
Ricardo Wurmus f7553c296d gnu: r-singler: Update to 2.14.0. 
* gnu/packages/bioconductor.scm (r-singler): Update to 2.14.0.
[propagated-inputs]: Remove r-biocneighbors, r-biocparallel, and r-delayedmatrixstats;
add r-biocgenerics.
[native-inputs]: Remove r-biobase and r-scuttle; add r-biocparallel.

Change-Id: Ibc3c2213fd69c1f9aa39840400b8f97f48343600
 2026-05-28 12:13:21 +02:00
Ricardo Wurmus 3666e14084 gnu: r-singlecellexperiment: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.34.0.

Change-Id: I5a549efb4ad670eecf66adbc005da7a854c65407
 2026-05-28 12:13:21 +02:00
Ricardo Wurmus 75e773067c gnu: r-motifmatchr: Update to 1.34.0. 
* gnu/packages/bioconductor.scm (r-motifmatchr): Update to 1.34.0.

Change-Id: I801f3ad78f7d94f9e85696dfd69defd7016b6fa5
 2026-05-28 12:13:21 +02:00
Ricardo Wurmus 28051950c3 gnu: r-maftools: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-maftools): Update to 2.28.0.

Change-Id: I2709cc7fd7992a623aa3f20e0ba83bcbebaef1ee
 2026-05-28 12:13:21 +02:00
Ricardo Wurmus 4245542743 gnu: r-tfbstools: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-tfbstools): Update to 1.50.0.

Change-Id: Ie92a29acd359f39d7d44b482884493ff37e61a09
 2026-05-28 12:13:21 +02:00
Ricardo Wurmus 49c850772d gnu: r-cner: Update to 1.48.0. 
* gnu/packages/bioconductor.scm (r-cner): Update to 1.48.0.

Change-Id: I6b10effcbfd8fe424f89dba4bc29556516b33d4c
 2026-05-28 12:13:21 +02:00
Ricardo Wurmus e6ed68e7b1 gnu: r-beaddatapackr: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-beaddatapackr): Update to 1.64.0.

Change-Id: I1ac4dac55f51c0897317aff4a9389565083ee9a2
 2026-05-28 12:13:20 +02:00
Ricardo Wurmus 9bd003a26d gnu: r-beadarray: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-beadarray): Update to 2.62.0.
[propagated-inputs]: Remove r-illuminaio.

Change-Id: I871c2849374f8aed5683c56264df0348ad78b11a
 2026-05-28 12:13:20 +02:00
Ricardo Wurmus c79aaed70f gnu: r-beachmat-hdf5: Update to 1.10.0. 
* gnu/packages/bioconductor.scm (r-beachmat-hdf5): Update to 1.10.0.

Change-Id: I4c15298a04227bed60f6af87988103d010719eb3
 2026-05-28 12:13:20 +02:00
Ricardo Wurmus 1ba5089bef gnu: r-beachmat: Update to 2.28.0. 
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.28.0.

Change-Id: Iebaa15b6b866a7448ef2c449546961f2236c5ece
 2026-05-28 12:13:20 +02:00
Ricardo Wurmus e527e07e95 gnu: r-hdf5array: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.40.0.

Change-Id: Ib7dab8421c9a4bddd8560c0c2e9b2a9eddf13ae7
 2026-05-28 12:13:20 +02:00