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140825 Commits

Author SHA1 Message Date
Ricardo Wurmus
5c87d17fb5 gnu: python-openapi-core: Update to 0.19.4. 
* gnu/packages/python-web.scm (python-openapi-core): Update to 0.19.4.
[arguments]: Disable only one test.
[native-inputs]: Remove python-pypa-build.

Change-Id: I0660bcd129fb182dd7559c04fc65513ff846eedc
 2025-01-20 21:37:29 +01:00
Ricardo Wurmus
26cb33cc6e gnu: python-openapi-schema-validator: Relax requirements. 
* gnu/packages/python-web.scm (python-openapi-schema-validator)[arguments]:
Add phase 'relax-requirements.

Change-Id: I57dcc2030bca914af730922f9c511fab286f9d7d
 2025-01-20 21:37:29 +01:00
Ricardo Wurmus
1f2f56c2ed gnu: python-falcon: Update to 4.0.2. 
* gnu/packages/python-web.scm (python-falcon): Update to 4.0.2.
[source]: Remove snippet.
[arguments]: Disable slow tests; rename 'set-HOME to 'pre-check.
[native-inputs]: Replace python-cython with python-cython-3.

Change-Id: I10d3b412b8abc3bfb2271adba7fb1597fdb24098
 2025-01-20 21:37:28 +01:00
Ricardo Wurmus
8c06ed66d0 gnu: python-testtools: Update to 2.7.2. 
* gnu/packages/check.scm (python-testtools-bootstrap):
Update to 2.7.2.
[propagated-inputs]: Drop labels.
[native-inputs]: Add python-hatchling, python-hatch-vcs, and
python-setuptools.
[build-system]: Use pyproject-build-system.
(python-testtools): Update to 2.7.2.
[arguments]: Disable some tests.
[native-inputs]: Add python-hatch-vcs, python-hatchling, python-twisted, and
python-setuptools.

Change-Id: I7c065b490229ecf4c11257c709b439521ef14222
 2025-01-20 21:37:28 +01:00
Ricardo Wurmus
975f78b1ce gnu: python-ipydatawidgets: Disable more tests and add inputs. 
* gnu/packages/jupyter.scm (python-ipydatawidgets)[arguments]: Disable widget
tests.
[propagated-inputs]: Add python-ipython-genutils; remove python-six.

Change-Id: I4e56f11d78880f1d99f59de3d53900f7aefb14ed
 2025-01-20 21:37:28 +01:00
Ricardo Wurmus
bd86c2c28e gnu: python-dnspython: Disable ECDSA tests. 
* gnu/packages/python-xyz.scm (python-dnspython)[arguments]: Disable four
tests.

Change-Id: Ia8dad056dca0842cd709180c0819d595b171b18b
 2025-01-20 21:37:28 +01:00
Ricardo Wurmus
4c0dbecfcf gnu: python-trio-typing: Update to 0.10.0. 
* gnu/packages/python-xyz.scm (python-trio-typing): Update to 0.10.0.
[native-inputs]: Remove python-attrs.
[propagated-inputs]: Remove python-mypy; add python-async-generator,
python-importlib-metadata, and python-packaging.

Change-Id: Ie8171ed0bdacb15f083c1c430162a8b4f28965f9
 2025-01-20 21:37:28 +01:00
Ricardo Wurmus
d918e0e609 gnu: python-trio: Update to 0.28.0. 
* gnu/packages/python-xyz.scm (python-trio): Update to 0.28.0.
[arguments]: Add phase 'ignore-deprecations.
[native-inputs]: Remove python-astor, python-jedi, python-isort, and
python-pytest-asyncio.
[propagated-inputs]: Remove python-async-generator.

Change-Id: I435fe322324bc5e58130d072db7f032c3a67c67e
 2025-01-20 21:37:28 +01:00
Ricardo Wurmus
80106ec319 gnu: python-pyopenssl: Update to 24.3.0. 
* gnu/packages/python-crypto.scm (python-pyopenssl): Update to 24.3.0.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-wheel.

Change-Id: I504a80c300a94698771734734bed29c07cb13bd5
 2025-01-20 21:37:28 +01:00
Ricardo Wurmus
baca820ebc gnu: python-cryptography: Update to 44.0.0. 
* gnu/packages/python-crypto.scm (python-cryptography): Update to 44.0.0.
[arguments]<cargo-inputs>: Replace rust-asn1-0.16 with rust-asn1-0.20; replace
rust-pyo3-0.22 with rust-pyo3-0.23.
[source]: Remove obsolete part of snippet.
[native-inputs]: Remove python-iso8601 and python-pytest-subtests; add
python-cffi, python-click, python-mypy, python-pytest-cov,
python-pytest-randomly, and python-pytest-xdist.

Change-Id: I44dab9afec879d45d4612cb15e582ce1a62635ad
 2025-01-20 21:37:28 +01:00
Ricardo Wurmus
10c6ef58ab gnu: python-cryptography-vectors: Update to 44.0.0. 
* gnu/packages/python-crypto.scm (python-cryptography-vectors): Update to
44.0.0.
[native-inputs]: Remove python-setuptools and python-wheel.

Change-Id: I9d73e0ee5ef9af14c5a7ce5900d0814fea707f87
 2025-01-20 21:37:28 +01:00
Ricardo Wurmus
1fd5f28306 gnu: python-traittypes: Fix tests. 
* gnu/packages/python-science.scm (python-traittypes)[arguments]: Add phase
'numpy-compatibility.

Change-Id: I41d55d65d0dafd44029de38b3044d9fad378db50
 2025-01-20 21:37:28 +01:00
Ricardo Wurmus
ac6167bc56 gnu: cwltool: Patch tox.ini. 
* gnu/packages/bioinformatics.scm (cwltool)[arguments]: Rename 'modify-tests
to 'patch-tests; add patch of tox.ini.

Change-Id: I2c90a8803e7eb1153cb4c7cc5b683875627c57f1
 2025-01-20 21:37:27 +01:00
Ricardo Wurmus
1520867768 gnu: cwltool: Use test-flags. 
* gnu/packages/bioinformatics.scm (cwltool)[arguments]: Use #:test-flags
instead of deleting and patching tests in 'modify-tests phase.

Change-Id: I0e4f16d48fba23e4197b69bf1c3923828f178cd0
 2025-01-20 21:37:27 +01:00
Ricardo Wurmus
d0b948ac2f gnu: python-prov: Update to 2.0.1. 
* gnu/packages/python-xyz.scm (python-prov): Update to 2.0.1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove 'fix-rdflib-6-compatibility phase; add custom 'check
phase.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: Ia5e0ed1ee6e9476f317b345234018f2391cc3e98
 2025-01-20 21:37:27 +01:00
Ricardo Wurmus
6a445656d0 gnu: python-rdflib-6: Accept newer isodate. 
* gnu/packages/rdf.scm (python-rdflib-6)[arguments]: Add phase 'compatibility.

Change-Id: I4b4c880b169c6606707c1e973af9488c07d18992
 2025-01-20 21:37:27 +01:00
Ricardo Wurmus
76d6d3d4f3 gnu: python-rdflib-6: Disable one test. 
* gnu/packages/rdf.scm (python-rdflib-6)[arguments]: Disable one additional
test.

Change-Id: Ifcfe1b11d09299e219499ea77f792ca41aa02d9c
 2025-01-20 21:37:27 +01:00
Ricardo Wurmus
3b4ee954db gnu: python-cwl-utils: Add missing inputs. 
* gnu/packages/bioinformatics.scm (python-cwl-utils)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I803a68c04923c96f793d508c23bb08069524bc63
 2025-01-20 21:37:27 +01:00
Ricardo Wurmus
841916b36e gnu: python-cwl-upgrader: Add missing inputs. 
* gnu/packages/bioinformatics.scm (python-cwl-upgrader)[native-inputs]: Add
python-setuptools and python-wheel.

Change-Id: I81531d588e6deb8a01c59f2a824b815e8f95e0f0
 2025-01-20 21:37:27 +01:00
Ricardo Wurmus
fa9789b36c gnu: python-schema-salad: Update to 8.8.20241206093842. 
* gnu/packages/bioinformatics.scm (python-schema-salad): Update to
8.8.20241206093842.
[arguments]: Patch tox.ini.
[propagated-inputs]: Remove python-importlib-resources, python-setuptools, and
python-typing-extensions.
[native-inputs]: Add python-cachecontrol, python-mypy, python-setuptools,
python-setuptools-scm, python-types-dataclasses, python-types-requests, and
python-types-setuptools.

Change-Id: I22ca7ad772078192117a1139adca410b53844008
 2025-01-20 21:37:27 +01:00
Ricardo Wurmus
ff4a9b282d gnu: python-isodate: Update to 0.7.2. 
* gnu/packages/time.scm (python-isodate): Update to 0.7.2.
[build-system]: Use pyproject-build-system.
[native-inputs]: Remove python-six; add python-pytest, python-setuptools,
python-setuptools-scm, and python-wheel.

Change-Id: I5ba64eb433e39c0bbb0360273f822d95ea7c63d3
 2025-01-20 21:37:27 +01:00
Ricardo Wurmus
7c942c1a63 gnu: python-cachecontrol: Update to 0.14.1. 
* gnu/packages/python-web.scm (python-cachecontrol): Update to 0.14.1.
[build-system]: Use pyproject-build-system.
[propagated-inputs]: Add python-filelock.
[native-inputs]: Add python-flit-core.

Change-Id: I61bc38aafe04cf7f11394a654cf28181d39ce355
 2025-01-20 21:37:27 +01:00
Ricardo Wurmus
8fe30f2ac7 gnu: python-rdflib-6: Update to 6.3.2. 
* gnu/packages/rdf.scm (python-rdflib-6): Update to 6.3.2.
[build-system]: Use pyproject-build-system.
[arguments]: Use #:test-flags instead of a custom build phase; update list of
disabled tests.
[native-inputs]: Add python-poetry-core and python-pytest-cov.

Change-Id: I0dd4ecebdf3ef04562c3a3efb37614bf5eec16f5
 2025-01-20 21:37:26 +01:00
Sergey Trofimov
37e8eeaafb gnu: fava: Update to 1.27. 
* gnu/packages/finance.scm (fava): Update to 1.27.
[arguments] <phases>: Remove 'relax-requirements, and 'set-home.
[native-inputs]: Remove python-chardet, python-dateutil, and
python-setuptootls-scm. Add python-babel, python-mypy,
python-pytest-cov, python-setuptootls, python-twine,
python-types-setuptootls, python-types-simplejson, and python-wheel.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Iee27197ece9685c500afe0dedb8ba33e02eb1ea1
 2025-01-20 21:37:26 +01:00
Sergey Trofimov
e2945c650d gnu: beancount: Fix build. 
* gnu/packages/finance.scm (beancount)
[native-inputs]: Add python-wheel and python-setuptools.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-01-20 21:37:26 +01:00
Sergey Trofimov
848d9f3d07 gnu: Add python-types-simplejson. 
* gnu/packages/python-xyz.scm (python-types-simplejson): New variable.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-01-20 21:37:26 +01:00
Sergey Trofimov
ece7f83d4e gnu: python-pdfminer-six: Update to 20240706. 
* gnu/packages/python-xyz.scm (python-pdfminer-six): Update to 20240706.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2025-01-20 21:37:26 +01:00
Sergey Trofimov
7f6b6775ca gnu: python-markdown2: Update to 2.5.2. 
* gnu/packages/python-xyz.scm (python-markdown2)
[arguments] <phases>: Use default 'check.
[native-inputs]: Add python-pytest, python-setuptools and python-wheel.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: Ic3df25863bbb37ec6282ec5dcbf815461663f8cd
 2025-01-20 21:37:26 +01:00
Sergey Trofimov
980d59617c gnu: python-flask-babel: Update to 4.0.0. 
* gnu/packages/python-web.scm (python-flask-babel): Update to 4.0.0.
[source]: Fetch from git as PyPI release doesn't include tests.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-poetry-core, python-pytest,
python-pytest-cov, and python-pytest-mock.
[propagated-inputs]: Sort.

Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I253b88eac7bec8152dc97634059c2402624cb961
 2025-01-20 21:37:26 +01:00
Sergey Trofimov
6f66ff8adb gnu: python-babel: Update to 2.16.0. 
* gnu/packages/python-xyz.scm (python-babel): Update to 2.16.0.
[source]: Adjust uri as it's changed in PyPI archive.
[build-system]: Swap to pyproject-build-system.
[arguments] <phases>: Use default 'check.
[native-inputs]: Add python-setuptools and python-wheel.

Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Change-Id: I32b7c5613e7db2c676745d6621f04b52a1cdf0ba
 2025-01-20 21:37:26 +01:00
Ricardo Wurmus
ae63ff8dca gnu: pyscenic: Update to 0.12.1-1.eaf23eb. 
* gnu/packages/bioinformatics.scm (pyscenic): Update to 0.12.1-1.eaf23eb.
[arguments]: Update phase 'do-not-reference-deleted-modules.
[propagated-inputs]: Add python-numexpr.
[native-inputs]: Add python-wheel.

Change-Id: Ib1b5a7d36a24b280160befe579057a241d69455d
 2025-01-20 21:37:26 +01:00
Ricardo Wurmus
43b061aaf6 gnu: python-pydantic-2: Update to 2.7.0. 
* gnu/packages/python-xyz.scm (python-pydantic-2): Update to 2.7.0.
[arguments]: Update tests.
[native-inputs]: Add tzdata-for-tests and python-jsonschema; remove
python-faker.

Change-Id: I8c85598f7603c58108602c6d67aa27314dea285e
 2025-01-20 21:37:26 +01:00
Ricardo Wurmus
fd954108f2 gnu: python-pydantic-core: Update to 2.18.1. 
* gnu/packages/python-xyz.scm (python-pydantic-core): Update to 2.18.1.
[arguments]: Replace rust-jiter-0.0.4 with rust-jiter-0.2, rust-strum-0.25
with rust-strum-0.26, rust-strum-macros-0.25 with rust-strum-macros-0.26, and
rust-speedate-0.13 with rust-speedate-0.14.
[native-inputs]: Add python-typing-extensions.

Change-Id: I8686509f43667484847a72972aa2dd88dbce9343
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
202248ba69 gnu: Add rust-jiter-0.2. 
* gnu/packages/crates-io.scm (rust-jiter-0.2): New variable.

Change-Id: I7488999f653e126e7179728d732fb0054f949bd9
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
072e5d404e gnu: python-annotated-types: Update to 0.7.0. 
* gnu/packages/python-xyz.scm (python-annotated-types): Update to 0.7.0.

Change-Id: I610b144339841768b4ce861d5457cf4184f756a2
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
573045f5f7 gnu: macs-3: Add missing input. 
* gnu/packages/bioinformatics.scm (macs-3)[native-inputs]: Add python-wheel.

Change-Id: I22b8d8e144434ae537af7c113f4719392933e90c
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
2825921d1e gnu: python-httpretty: Enable tests. 
* gnu/packages/web.scm (python-httpretty)[arguments]: Enable most tests.
[native-inputs]: Add nss-certs-for-test, python-freezegun, python-httplib2,
and python-pyparsing.

Change-Id: I08d2c14a2e81559d41dc38f0eeb34c2d6c59125a
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
aa704e51ab gnu: python-dulwich: Update to 0.21.7. 
* gnu/packages/python-xyz.scm (python-dulwich): Update to 0.21.7.
[build-system]: Use pyproject-build-system.
[arguments]: Use #:test-flags; fix tests after 'unpack phase, split off
'pre-check phase.
[native-inputs]: Replace git with git-minimal/pinned; add python-mypy,
python-paramiko, python-pytest, python-requests, python-setuptools, and
python-wheel; remove python-mock and python-gpg.

Change-Id: I642de3e7707d545672066c6e59c9bcc2b5926097
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
8992cf4cf1 gnu: python-geventhttpclient: Update to 2.3.3. 
* gnu/packages/python-web.scm (python-geventhttpclient): Update to 2.3.3.
[source]: Fetch from git repository; remove snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Use #:test-flags; remove all custom phases.
[native-inputs]: Add python-requests, python-setuptools, and python-wheel.
[propagated-inputs]: Remove python-six.

Change-Id: Ide97ffb7d656f58dd6693bd59ff82706bfea6caa
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
ddfa62f104 gnu: python-gevent: Propagate greenlet. 
* gnu/packages/python-xyz.scm (python-gevent)[native-inputs]: Move
python-greenlet from here...
[propagated-inputs]: ...to here.
[arguments]: Adjust.

Change-Id: I5ebac1dd5e8c16b11e4855da78972c98f10cd285
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
6cb2030688 gnu: python-eventlet: Update to 0.38.2. 
* gnu/packages/python-xyz.scm (python-eventlet): Update to 0.38.2.
[native-inputs]: Add python-pre-commit.
[arguments]: Disable one more test.

Change-Id: I73638abba7d5363538d7c65254e610e704fbe5d0
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
e06450378c gnu: python-gevent: Update to 24.11.1. 
* gnu/packages/python-xyz.scm (python-gevent): Update to 24.11.1.
[build-system]: Use pyproject-build-system.
[arguments]: Use #:test-flags; enable more tests; rename
'add-greenlet-on-C_INCLUDE_PATH to 'augment-C_INCLUDE_PATH.
[propagated-inputs]: Remove python-greenlet.
[native-inputs]: Add python-cffi, python-coverage, python-greenlet,
python-idna, python-requests, python-setuptools, and python-wheel.
[inputs]: Add libuv.

Change-Id: Idd09ca01caf2977783c5a05eac2817b5630df327
 2025-01-20 21:37:25 +01:00
Ricardo Wurmus
aa0d8b7e6c gnu: python-pandas-2: Restrict number of test processes. 
* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Restrict to at
most four processes.

Change-Id: I8ee4cb29ad922e9b853515b5f0e8f8aabca52c92
 2025-01-20 21:37:24 +01:00
Ricardo Wurmus
0a7a2b24d3 gnu: python-pandas-2: Remove X. 
These tests are not run anyway, so there is no need to launch an X server.

* gnu/packages/python-science.scm (python-pandas-2)[arguments]: Rename
'prepare-x phase to 'pre-check.
[native-inputs]: Remove xorg-server-for-tests.

Change-Id: Ib85883360397d2715a1893b74435d96a1d119f9e
 2025-01-20 21:37:24 +01:00
Ricardo Wurmus
aa0650d159 gnu: python-pythran: Update to 0.17.0. 
* gnu/packages/python-science.scm (python-pythran): Update to 0.17.0.
[build-system]: Use pyproject-build-system.
[source]: Remove obsolete snippet.
[arguments]: Remove phase 'do-not-install-third-parties and custom 'check
phase; use #:test-flags and add 'pre-check phase.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I49ebdd21cfb0668dd84f0d12c460a86ed694c7d6
 2025-01-20 21:37:24 +01:00
Ricardo Wurmus
f0739f3ae4 gnu: python-beniget: Update to 0.4.2.post1. 
* gnu/packages/python-xyz.scm (python-beniget): Update to 0.4.2.post1.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-setuptools and python-wheel.

Change-Id: I03c53e97f1bb4ae7c13a4af2c7e4434137f764d6
 2025-01-20 21:37:24 +01:00
Ricardo Wurmus
a6ab0705c4 gnu: python-gast: Update to 0.6.0. 
* gnu/packages/python-xyz.scm (python-gast): Update to 0.6.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.
[native-inputs]: Add python-setuptools and python-wheel.
[propagated-inputs]: Remove.

Change-Id: I3cc17b2c5434e637435f76482e0dcaf54c75c0dd
 2025-01-20 21:37:24 +01:00
Sharlatan Hellseher
6be739763c gnu: linkchecker: Update to 10.5.0. 
* gnu/packages/web.scm (linkchecker): Update to 10.5.0. Improve package
style. Fix bulid.
[build-system]: Swap to pyproject-build-system.
[arguments]<test-flags>: Skip 2 tests.
<phases>: Add 'set-version. Use default 'check.
[inputs]: Remove python-pyxdg.
[native-inputs]: Remove lables. Remove gettext-minimal, python-miniboa,
and python-parameterized; add python-hatch-vcs, python-hatchling, and
python-setuptools-scm.

Change-Id: I2292be0305e8ad3991680ced6b154c48571e3efc
 2025-01-20 21:37:24 +01:00
Sharlatan Hellseher
908b9b27e5 gnu: python-email-validator: Update to 2.2.0. 
* gnu/packages/python-xyz.scm (python-email-validator): Update to
2.2.0. Improve style.
[build-system]: Swap to pyrpoject-build-system.
[arguments]<test-flags>: Skip one test.
<phases>: Remove 'use-dnspython as removed in
<https://github.com/JoshData/python-email-validator/pull/13>.
[native-inputs]: Add python-pytest, python-setuptools, and python-wheel.

Change-Id: Idc51ad58fe734071aa66f44bce0fb7cbf84831b6
 2025-01-20 21:37:24 +01:00
Sharlatan Hellseher
1ebc72c323 gnu: python-dnspython: Update to 2.7.0. 
* gnu/packages/python-xyz.scm (python-dnspython): Update to
2.7.0. Improve style.
[source]: PyPI archive has been swapped from .zip to .tar.gz.
[build-system]: Swap to pyproject-build-system.
[arguments]<test-flags>: Skip 2 tests.
[propagated-inputs]: Add python-cryptography, python-aioquic, python-h2,
python-httpcore, python-httpx, python-idna, and python-trio.
[native-inputs]: Remove unzip; add python-hatchling and python-pytest.

Change-Id: I726a9d68c61435089c1e7a846e8aa7c8b41f8378
 2025-01-20 21:37:24 +01:00