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a052d5ab0dc66c70185dad4242918728f6ff661c
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Author SHA1 Message Date
Tobias Geerinckx-Rice
a052d5ab0d gnu: isync: Add SASL support. 
This adds ~5.5 MiB (7.5%) to isync's now-78.6 MiB closure.

* gnu/packages/mail.scm (isync)[inputs]: Add CYRUS-SASL.
 2018-06-04 15:35:43 +02:00
Efraim Flashner
c0e7a52996 gnu: python-pyqt: Update to 5.10.1. 
* gnu/packages/qt.scm (python-pyqt): Update to 5.10.1.
[inputs]: Remove qtwebkit.
[arguments]: Add custom phase to fix compilation with Qt 5.11.
 2018-06-04 11:06:00 +03:00
Efraim Flashner
9cdd868450 gnu: python-sip: Update to 4.19.8. 
* gnu/packages/qt.scm (python-sip): Update to 4.19.8.
 2018-06-04 11:05:57 +03:00
Efraim Flashner
d53e5b366d gnu: gcompris-qt: Update to 0.91. 
* gnu/packages/education.scm (gcompris-qt): Update to 0.91.
[arguments]: Add custom phase to fix building with Qt 5.11.
 2018-06-03 19:11:27 +03:00
Efraim Flashner
68ddfb2e8d gnu: quassel: Fix building with Qt 5.11. 
* gnu/packages/irc.scm (quassel)[sources]: Add patch. Return #t from
snippet.
* gnu/packages/patches/quassel-qt-5.11.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
 2018-06-03 15:49:50 +03:00
Rutger Helling
4edc431b0f gnu: w3m: Enable image support. 
* gnu/packages/w3m.scm (w3m)[inputs]: Add gdk-pixbuf, libx11.
 2018-06-03 13:01:41 +02:00
Efraim Flashner
6f5c67d725 gnu: keepassxc: Fix compilation with Qt 5.11. 
* gnu/packages/password-utils.scm (keepassxc)[arguments]: Add custom
'patch-sources phase to include missing headers.
 2018-06-03 12:46:11 +03:00
Mark H Weaver
2c790226d2 gnu: rust: Fix build for armhf and mips64el. 
This is a followup to commit 514026d7de.

* gnu/packages/rust.scm (nix-system->gnu-triplet-for-rust): New variable.
(rust-bootstrap, mrustc, rust-1.23): Use 'nix-system->gnu-triplet-for-rust'
instead of 'nix-system->gnu-triplet'.
 2018-06-03 03:36:13 -04:00
Efraim Flashner
0ec430f795 gnu: xxd: Remove all inherited inputs. 
* gnu/packages/vim.scm (xxd)[inputs]: New field, don't inherit from vim.
 2018-06-02 23:34:56 +03:00
Efraim Flashner
aa75dadab8 gnu: vim: Update to 8.1.0026. 
* gnu/packages/vim.scm (vim): Update to 8.1.0026.
[arguments]: Update substitute list on custom 'patch-config-files phase.
[inputs]: Remove inetutils.
 2018-06-02 23:34:37 +03:00
Efraim Flashner
2d4fdb707e gnu: xxd: Return true from all phases. 
* gnu/packages/vim.scm (xxd)[arguments]: Return '#t' from custom 'chdir
phase.
 2018-06-02 22:34:23 +03:00
Pierre Neidhardt
15dcd292df gnu: Add emacs-fish-completion. 
* gnu/packages/emacs.scm (emacs-fish-completion): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-02 16:02:52 +02:00
Pierre Neidhardt
e374010923 gnu: Add emacs-evil-org. 
* gnu/packages/emacs.scm (emacs-evil-org): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-02 16:02:51 +02:00
Pierre Neidhardt
ac85107c9f gnu: Add emacs-evil-multiedit. 
* gnu/packages/emacs.scm (emacs-evil-multiedit): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-02 16:02:51 +02:00
Pierre Neidhardt
e1e09bcb43 gnu: Add emacs-evil-mu4e. 
* gnu/packages/emacs.scm (emacs-evil-mu4e): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-02 16:02:51 +02:00
Pierre Neidhardt
c6c1f0bf41 gnu: Add emacs-evil-magit. 
* gnu/packages/emacs.scm (emacs-evil-magit): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-02 16:02:51 +02:00
Pierre Neidhardt
22deb03439 gnu: Add emacs-evil-ediff. 
* gnu/packages/emacs.scm (emacs-evil-ediff): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2018-06-02 16:02:51 +02:00
Ludovic Courtès
8292f5a9c5 self: Do not build (guix man-db). 
* guix/self.scm (specification->package): Remove "guile-gdbm-ffi" and
"guile2.0-gdbm-ffi".
(compiled-guix)[guile-gdbm-ffi]: Remove.
[dependencies]: Remove it.
[*core-modules*]: Add "guix/man-db.scm" via #:extra-files.
[*extra-modules*]: Exclude "guix/man-db.scm".
 2018-06-02 16:02:51 +02:00
Ricardo Wurmus
92963798a6 gnu: r-scater: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.8.0.
[propagated-inputs]: Add r-delayedarray ad r-delayedmatrixstats; remove
r-matrixstats and r-biomart.
 2018-06-02 13:42:05 +02:00
Ricardo Wurmus
41f17554d8 import: cran: Update to Bioconductor 3.7. 
* guix/import/cran.scm (%bioconductor-version): Update to 3.7.
 2018-06-02 13:39:13 +02:00
Ricardo Wurmus
83402242ea gnu: r-mvtnorm: Update to 1.0-8. 
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-8.
 2018-06-02 13:39:13 +02:00
Ricardo Wurmus
7799a01ef1 gnu: r-rgraphviz: Update to 2.24.0. 
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.24.0.
 2018-06-02 13:39:13 +02:00
Ricardo Wurmus
d7e3299987 gnu: r-scran: Update to 1.8.2. 
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.8.2.
[propagated-inputs]: Remove r-zoo; add r-delayedmatrixstats and r-delayedarray.
 2018-06-02 13:39:13 +02:00
Ricardo Wurmus
8ec56b2956 gnu: r-delayedmatrixstats: Update to 1.2.0. 
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Update to 1.2.0.
 2018-06-02 13:39:12 +02:00
Ricardo Wurmus
d99e0938fa gnu: r-singlecellexperiment: Update to 1.2.0. 
* gnu/packages/bioinformatics.scm (r-singlecellexperiment): Update to 1.2.0.
 2018-06-02 13:39:12 +02:00
Ricardo Wurmus
fd613234b7 gnu: r-beachmat: Update to 1.2.1. 
* gnu/packages/bioinformatics.scm (r-beachmat): Update to 1.2.1.
[inputs]: Add zlib.
 2018-06-02 13:39:12 +02:00
Ricardo Wurmus
e9c417361e gnu: r-rhdf5lib: Update to 1.2.1. 
* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.2.1.
[arguments]: Adjust substitutions.
 2018-06-02 13:39:12 +02:00
Ricardo Wurmus
0840352835 gnu: r-hdf5array: Update to 1.8.0. 
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.8.0.
 2018-06-02 13:39:12 +02:00
Ricardo Wurmus
5cd725d002 gnu: r-qvalue: Update to 2.12.0. 
* gnu/packages/bioinformatics.scm (r-qvalue): Update to 2.12.0.
 2018-06-02 13:39:12 +02:00
Ricardo Wurmus
c6c619c179 gnu: r-hitc: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-hitc): Update to 1.24.0.
 2018-06-02 13:39:12 +02:00
Ricardo Wurmus
4dedecbe70 gnu: r-fithic: Update to 1.6.0. 
* gnu/packages/bioinformatics.scm (r-fithic): Update to 1.6.0.
 2018-06-02 13:39:12 +02:00
Ricardo Wurmus
8db6256f4b gnu: r-sushi: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.18.0.
 2018-06-02 13:39:12 +02:00
Ricardo Wurmus
2d3c172b72 gnu: r-gwascat: Update to 2.12.0. 
* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.12.0.
 2018-06-02 13:39:12 +02:00
Ricardo Wurmus
fecbbac286 gnu: r-gviz: Update to 1.24.0. 
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.24.0.
 2018-06-02 13:39:12 +02:00
Ricardo Wurmus
6929b97583 gnu: r-gqtlstats: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.12.0.
[propagated-inputs]: Add r-homo-sapiens; remove r-ldblock.
 2018-06-02 13:39:12 +02:00
Ricardo Wurmus
45c29a6e5c gnu: r-ldblock: Update to 1.10.0. 
* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.10.0.
[propagated-inputs]: Add r-biocgenerics.
 2018-06-02 13:39:12 +02:00
Ricardo Wurmus
9b0b108ed9 gnu: r-erma: Update to 0.12.0. 
* gnu/packages/bioinformatics.scm (r-erma): Update to 0.12.0.
[propagated-inputs]: Remove r-foreach; add r-biocparallel, r-genomeinfodb, and
r-iranges.
 2018-06-02 13:39:12 +02:00
Ricardo Wurmus
d26f95d079 gnu: r-snpstats: Update to 1.30.0. 
* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.30.0.
 2018-06-02 13:39:12 +02:00
Ricardo Wurmus
dcd1f0236c gnu: r-gqtlbase: Update to 1.12.0. 
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.12.0.
 2018-06-02 13:39:12 +02:00
Ricardo Wurmus
e214a6e6ff gnu: r-ggbio: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.28.0.
 2018-06-02 13:39:11 +02:00
Ricardo Wurmus
34cc18d4de gnu: r-biovizbase: Update to 1.28.0. 
* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.28.0.
 2018-06-02 13:39:11 +02:00
Ricardo Wurmus
94ae875c0a gnu: r-organismdbi: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.22.0.
 2018-06-02 13:39:11 +02:00
Ricardo Wurmus
bbcd19fb4d gnu: r-ensembldb: Update to 2.4.1. 
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.4.1.
[propagated-inputs]: Remove r-annotationhub.
 2018-06-02 13:39:11 +02:00
Ricardo Wurmus
19adb89854 gnu: r-dirichletmultinomial: Update to 1.22.0. 
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): Update to 1.22.0.
 2018-06-02 13:39:11 +02:00
Ricardo Wurmus
d3fb2ad834 gnu: r-complexheatmap: Update to 1.18.0. 
* gnu/packages/bioinformatics.scm (r-complexheatmap): Update to 1.18.0.
 2018-06-02 13:39:11 +02:00
Ricardo Wurmus
d1463f1b0c gnu: r-genomicfiles: Update to 1.16.0. 
* gnu/packages/bioinformatics.scm (r-genomicfiles): Update to 1.16.0.
 2018-06-02 13:39:11 +02:00
Ricardo Wurmus
1ba126e0e4 gnu: r-gage: Update to 2.30.0. 
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.30.0.
 2018-06-02 13:39:11 +02:00
Ricardo Wurmus
419e438d52 gnu: r-keggrest: Update to 1.20.0. 
* gnu/packages/bioinformatics.scm (r-keggrest): Update to 1.20.0.
 2018-06-02 13:39:11 +02:00
Ricardo Wurmus
15cc1a6867 gnu: r-fastseg: Update to 1.26.0. 
* gnu/packages/bioinformatics.scm (r-fastseg): Update to 1.26.0.
 2018-06-02 13:39:11 +02:00
Ricardo Wurmus
646439c7e3 gnu: r-annotationhub: Update to 2.12.0. 
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.12.0.
 2018-06-02 13:39:11 +02:00