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Author SHA1 Message Date
Ricardo Wurmus
b363bd6701 gnu: r-pagoda2: Update to 1.0.14. 
* gnu/packages/cran.scm (r-pagoda2): Update to 1.0.14.

Change-Id: I1b36fe526b9c933ce393a163a4850741bb8fca51
 2026-04-02 07:37:04 +02:00
Ricardo Wurmus
9aee49d65d gnu: r-phyloseq: Update to 1.54.2. 
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.54.2.

Change-Id: Ide709c5d2e6186c9d816c65acbe3786917b549b4
 2026-04-02 07:37:04 +02:00
Ricardo Wurmus
e360849ac5 gnu: r-sparsearray: Update to 1.10.9. 
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.10.9.

Change-Id: I9ca97aae122e788997d3f74872c1df1229be4bca
 2026-04-02 07:37:04 +02:00
Ricardo Wurmus
2184edcc66 gnu: r-enrichplot: Update to 1.30.5. 
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.30.5.

Change-Id: I5e3ee050327a5ea536e46a8136f2349e4440aefe
 2026-04-02 07:37:04 +02:00
Ricardo Wurmus
f767cfc824 gnu: r-systempiper: Update to 2.16.4. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.16.4.

Change-Id: Iac7cf251a58614b71e3d2c82e52a7180f44a55a8
 2026-04-02 07:37:04 +02:00
Ricardo Wurmus
1c564df9fe gnu: r-gsva: Update to 2.4.7. 
* gnu/packages/bioconductor.scm (r-gsva): Update to 2.4.7.

Change-Id: I0b8d1dbf0d5563463b7af9ecf3ac5617a19c679e
 2026-04-02 07:37:03 +02:00
Ricardo Wurmus
17b3d6f8b5 gnu: r-anndatar: Update to 1.0.2. 
* gnu/packages/bioconductor.scm (r-anndatar): Update to 1.0.2.

Change-Id: Ib9e3b5a62fad67efa950b8ab50ac7ee5645f5f85
 2026-04-02 07:37:03 +02:00
Ricardo Wurmus
1957fa7155 gnu: r-textclean: Update to 0.9.7. 
* gnu/packages/cran.scm (r-textclean): Update to 0.9.7.

Change-Id: I4d650d0387f83dbe359af27b58b8ce619ab2d1d0
 2026-04-02 07:37:03 +02:00
Ricardo Wurmus
b02b81b3a6 gnu: r-ragg: Update to 1.5.1. 
* gnu/packages/cran.scm (r-ragg): Update to 1.5.1.

Change-Id: If45af0b4579134653be64051ff38932880f8f935
 2026-04-02 07:37:03 +02:00
Ricardo Wurmus
c7c6e4fb11 gnu: r-textshaping: Update to 1.0.5. 
* gnu/packages/cran.scm (r-textshaping): Update to 1.0.5.

Change-Id: I373f69797d6cadc90e07f014a9168d96955551c8
 2026-04-02 07:37:03 +02:00
Ricardo Wurmus
4c6dfa16b9 gnu: r-forestplot: Update to 3.2.0. 
* gnu/packages/cran.scm (r-forestplot): Update to 3.2.0.

Change-Id: I412bf585c4b1e15a5206d2e9a1552a58d3afe5f5
 2026-04-02 07:37:03 +02:00
Ricardo Wurmus
1f42af9940 gnu: r-actuar: Update to 3.3-7. 
* gnu/packages/cran.scm (r-actuar): Update to 3.3-7.

Change-Id: I6e0731a6ff02e411720777cf428d1f757caef6d7
 2026-04-02 07:37:03 +02:00
Ricardo Wurmus
fba95435dd gnu: r-systemfonts: Update to 1.3.2. 
* gnu/packages/cran.scm (r-systemfonts): Update to 1.3.2.

Change-Id: Ib82e9f1fc04b19a5711424f4df4b8a711771f21e
 2026-04-02 07:37:03 +02:00
Ricardo Wurmus
cfa57b816c gnu: r-leidenalg: Update to 1.1.6. 
* gnu/packages/cran.scm (r-leidenalg): Update to 1.1.6.

Change-Id: Id8bd7bbeb357b40258ddd42076f8cdd8e8205f03
 2026-04-02 07:37:03 +02:00
Ricardo Wurmus
3d7d025ed9 gnu: r-ggpattern: Update to 1.3.1. 
* gnu/packages/cran.scm (r-ggpattern): Update to 1.3.1.

Change-Id: I405ae568a2fa2677e016a99d485214e87ae2689c
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
9d71f496dd gnu: r-testit: Update to 0.17. 
* gnu/packages/cran.scm (r-testit): Update to 0.17.

Change-Id: I8d3c8b9255a8dca9574532a1ed3162824b6f34e7
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
e0c0535193 gnu: r-gmisc: Update to 3.2.0. 
* gnu/packages/cran.scm (r-gmisc): Update to 3.2.0.
[native-inputs]: Remove r-boot and r-rms; add r-bench and r-vdiffr.

Change-Id: I113c5a2c5dd203b1239940f8b3a9373d17e742a6
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
58a4acd3f9 gnu: r-ddrtree: Update to 0.1.6. 
* gnu/packages/cran.scm (r-ddrtree): Update to 0.1.6.

Change-Id: I3627152d3ed65e78d08e2e8147779ff3c1247c23
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
9c350828bc gnu: r-rgl: Update to 1.3.36. 
* gnu/packages/cran.scm (r-rgl): Update to 1.3.36.

Change-Id: I49d1cbd90ed4104485432f5f4b004737749d92b4
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
e108a38b92 gnu: r-rcppparallel: Update to 5.1.11-2. 
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.1.11-2.

Change-Id: I7dc07cf9335d66d05a6848819a7413bbcd68a6ef
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
96de7aa64c gnu: r-lmertest: Update to 3.2-1. 
* gnu/packages/cran.scm (r-lmertest): Update to 3.2-1.

Change-Id: I05dcfe993121b3dcbf162e1c5de4840a8b2ca60a
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
903df015fa gnu: r-libcoin: Update to 1.0-11. 
* gnu/packages/cran.scm (r-libcoin): Update to 1.0-11.

Change-Id: Ife13b483454bd766b2c7139795b51599ed9da46b
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
c1c3f65d9d gnu: r-emmeans: Update to 2.0.2. 
* gnu/packages/cran.scm (r-emmeans): Update to 2.0.2.

Change-Id: I15ccc9678d5f000c9779e3f693a0a607a666fbfa
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
6b494bdb63 gnu: r-nleqslv: Update to 3.3.6. 
* gnu/packages/cran.scm (r-nleqslv): Update to 3.3.6.

Change-Id: I7534f409a5c02a3218f3054bb235fd3b95e8e195
 2026-04-02 07:37:02 +02:00
Ricardo Wurmus
73f9482ffd gnu: r-flashclust: Update to 1.1-4. 
* gnu/packages/cran.scm (r-flashclust): Update to 1.1-4.

Change-Id: If8b3c69cdd80e85cb2ebab8b2671902f0be6ae58
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
8866836a0a gnu: r-renv: Update to 1.1.8. 
* gnu/packages/cran.scm (r-renv): Update to 1.1.8.

Change-Id: Iff24ede74a488cf72ea3ff12bcc97049a0736680
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
be062b52ac gnu: r-later: Update to 1.4.8. 
* gnu/packages/cran.scm (r-later): Update to 1.4.8.

Change-Id: Iace0e377c69a3034dc16b82f8c0223e17fb35acd
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
e828c8aea0 gnu: r-n2r: Update to 1.0.4. 
* gnu/packages/cran.scm (r-n2r): Update to 1.0.4.

Change-Id: Ia9e8a450d30a2f539e24d11035b1f7fe2816e138
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
1cfdc1e93c gnu: r-rmysql: Update to 0.11.2. 
* gnu/packages/cran.scm (r-rmysql): Update to 0.11.2.

Change-Id: Ib309b60c336ccddad4beff5de1af6ff011fa372c
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
b5d01a88b2 gnu: r-partykit: Update to 1.2-26. 
* gnu/packages/cran.scm (r-partykit): Update to 1.2-26.

Change-Id: Ica2b504c1b07c94e60a722614472c2ab191efec5
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
c221450171 gnu: r-mirt: Update to 1.46.1. 
* gnu/packages/cran.scm (r-mirt): Update to 1.46.1.
[propagated-inputs]: Add r-splines2.

Change-Id: I82430ecb16b5422b83b0967929d2ae28047bc7b7
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
faa50bbe5a gnu: r-shinymeta: Update to 0.2.2. 
* gnu/packages/cran.scm (r-shinymeta): Update to 0.2.2.

Change-Id: I68a425f8fc73f87a2edd577769b43882ee8205ee
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
684812a4a6 gnu: r-httpgd: Update to 2.1.4. 
* gnu/packages/cran.scm (r-httpgd): Update to 2.1.4.

Change-Id: Ie3c6a7a44dee59e7453f30a976279ac5a04de519
 2026-04-02 07:37:01 +02:00
Ricardo Wurmus
e866f04012 gnu: r-highr: Update to 0.12. 
* gnu/packages/cran.scm (r-highr): Update to 0.12.

Change-Id: Ifa81b636ed88b342b0db65cf64b5483c4150cc02
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
607037fd8f gnu: r-tglkmeans: Update to 0.6.1. 
* gnu/packages/cran.scm (r-tglkmeans): Update to 0.6.1.
[propagated-inputs]: Remove r-ggplot2 and r-plyr.

Change-Id: I150d5ea1a89cf64bcaadac0f65a19869ea665827
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
7785ea071f gnu: r-vegan: Update to 2.7-3. 
* gnu/packages/cran.scm (r-vegan): Update to 2.7-3.

Change-Id: Ife9607438db6d1cb4e9cb9de5671d257d49365b2
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
9961c9b818 gnu: r-mirai: Update to 2.6.1. 
* gnu/packages/cran.scm (r-mirai): Update to 2.6.1.

Change-Id: I7db0ee77e98d3a897845341e774597e99073d5e6
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
e97ececffe gnu: r-lme4: Update to 2.0-1. 
* gnu/packages/cran.scm (r-lme4): Update to 2.0-1.

Change-Id: I51b587b69202c3ab48e0b4b6f0ff8d31dfbfb184
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
1f75198256 gnu: r-ggstats: Update to 0.13.0. 
* gnu/packages/cran.scm (r-ggstats): Update to 0.13.0.

Change-Id: I67d6a0c35e596f2ca291f973524a42a61bfa8d3c
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
47a038d430 gnu: r-cubist: Update to 0.6.0. 
* gnu/packages/cran.scm (r-cubist): Update to 0.6.0.
[native-inputs]: Add r-dplyr, r-mlbench, and r-withr.

Change-Id: I3156f66a389c0aacd57506c3a1663256e604cb50
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
547d7b386a gnu: r-bayesfactor: Update to 0.9.12-4.8. 
* gnu/packages/cran.scm (r-bayesfactor): Update to 0.9.12-4.8.

Change-Id: Ia125c84226b5bf04b65b37085857e2c219fac1dc
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
e36dc2ae2a gnu: r-microbiomestat: Update to 1.4. 
* gnu/packages/bioconductor.scm (r-microbiomestat): Update to 1.4.
[propagated-inputs]: Remove r-bbmisc, r-lhs, r-mlr, r-mlrmbo, r-paramhelpers, and
r-smoof; add r-bbotk, r-mlr3, r-mlr3mbo, and r-paradox.

Change-Id: Idc8342d33e47af8a4f9b0d104bce410dfca9417d
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
de1af38bce gnu: r-codedepends: Update to 0.6.7. 
* gnu/packages/bioconductor.scm (r-codedepends): Update to 0.6.7.

Change-Id: I9d35a67f25515137d58bc45f7dc8468f99f56395
 2026-04-02 07:37:00 +02:00
Ricardo Wurmus
f41346ad63 gnu: r-xllim: Update to 2.3.1. 
* gnu/packages/bioconductor.scm (r-xllim): Update to 2.3.1.

Change-Id: I0881a5df658b4ea7c6e76c5f17ca6f0c98da1753
 2026-04-02 07:36:59 +02:00
Ricardo Wurmus
03f528ab40 gnu: r-rcppgsl: Update to 0.3.14. 
* gnu/packages/cran.scm (r-rcppgsl): Update to 0.3.14.
[propagated-inputs]: Move gsl from here...
[inputs]: ...to here.

Change-Id: Ibac2ab81b38205364fc7f810024ac45968fc3de0
 2026-04-02 07:36:59 +02:00
Ricardo Wurmus
3efea96506 gnu: r-fs: Update to 1.6.7. 
* gnu/packages/cran.scm (r-fs): Update to 1.6.7.
[native-inputs]: Add pkg-config.

Change-Id: I34d6a0609723c0aef709844f46b637caae9eee4d
 2026-04-02 07:36:59 +02:00
Ricardo Wurmus
a47c21b162 gnu: r-factoextra: Update to 2.0.0. 
* gnu/packages/cran.scm (r-factoextra): Update to 2.0.0.
[propagated-inputs]: Remove r-abind, r-reshape2, and r-tidyr; add r-rlang.
[native-inputs]: Add r-testthat.

Change-Id: If3b8016e74fc6002837b0020576f51e67cd517cb
 2026-04-02 07:36:59 +02:00
Ricardo Wurmus
e463d523cb gnu: r-cvxr: Update to 1.8.1. 
* gnu/packages/cran.scm (r-cvxr): Update to 1.8.1.
[arguments]: Enable all tests.
[propagated-inputs]: Remove r-bit64, r-ecosolver, and r-rmpfr; add r-clarabel,
r-highs, r-s7, and r-slam.

Change-Id: Ibd5ef85da179a1f0a4c77f4b285e29bcc8794cea
 2026-04-02 07:36:59 +02:00
Nguyễn Gia Phong
c18362a386 teams: qa-packages: Abandon gnu/ci.scm. 
This module was adopted by mistake.

* etc/teams.scm (qa-packages)<#:scope>: Remove "gnu/ci.scm".

Change-Id: I132c7df0f3b3d13294574db0df60d81e59a3dc7a
Merges: https://codeberg.org/guix/guix/pulls/7326
Reviewed-by: Maxim Cournoyer <maxim@guixotic.coop>
Reviewed-by: Ludovic Courtès <ludo@gnu.org>
Reviewed-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
 2026-04-02 14:29:33 +09:00
Nguyễn Gia Phong
c655fe2dd5 gnu: neomutt: Update to 20260105. 
* gnu/packages/mail.scm (neomutt): Update to 20260105.
  [native-inputs]:
    Update neomutt-test-files to commit c769cdefd45b.
    Add autosetup and remove its transitive dependency tcl.
  [source]: Add snippet and its required modules to unbundle autosetup.
  [arguments]
    <phases>:
      {configure}: Invoke autosetup directly.
      {prepare-test-files}: Re-enable test_mutt_sig_exit_handler.
    <configure-flags>:
      Move --prefix to the definition of the configure phase.
      Remove --ssl=1 which now conflicts with --gnutls.
      Add --enable-autocrypt.
  [inputs]: Add sqlite for autocrypt support.

Change-Id: I604876d66623bdc7d799d86962f60e437003f57f
Merges: https://codeberg.org/guix/guix/pulls/4835
Reviewed-by: Simon Tournier <zimon.toutoune@gmail.com>
 2026-04-02 14:26:42 +09:00