d36549fcab
gnu: xenon: Update to 0.9.3.
...
* gnu/packages/code.scm (xenon): Update to 0.9.3.
[properties]: Add lint-hidden-cpe-vendors property.
Signed-off-by: Zheng Junjie <z572@z572.online >
2025-06-23 12:31:14 +08:00
ca33698127
gnu: h2c: Add lint-hidden-cpe-vendors property.
...
* gnu/packages/curl.scm (h2c)[property]: Add lint-hidden-cpe-vendors property.
Signed-off-by: Zheng Junjie <z572@z572.online >
2025-06-23 12:31:14 +08:00
cc384dcc9b
gnu: cli: Add lint-hidden-cpe-vendors property.
...
* gnu/packages/cpp.scm (cli)[properties]: Add lint-hidden-cpe-vendors
property.
Signed-off-by: Zheng Junjie <z572@z572.online >
2025-06-23 12:31:14 +08:00
a1dbf22d18
gnu: express: Add lint-hidden-cpe-vendors property.
...
* gnu/packages/bioinformatics.scm (express)[properties]: Add
lint-hidden-cpe-vendors property.
Signed-off-by: Zheng Junjie <z572@z572.online >
2025-06-23 12:31:14 +08:00
ef12829e26
gnu: spectra: Add lint-hidden-cpe-vendors property.
...
* gnu/packages/algebra.scm (spectra)[properties]: Add
lint-hidden-cpe-vendors property.
Signed-off-by: Zheng Junjie <z572@z572.online >
2025-06-23 12:31:14 +08:00
9a591e580b
gnu: folders: Add lint-hidden-cpe-vendors property.
...
* gnu/packages/esolangs.scm (folders):
[properties]: Add lint-hindden-cpe-vendors property.
Signed-off-by: Zheng Junjie <z572@z572.online >
2025-06-23 12:31:14 +08:00
2139874502
gnu: portfolio: Update to 1.0.1.
...
* gnu/packages/gnome-xyz.scm (portfolio): Update to 1.0.1.
[properties]: Add lint-hidden-cpe-vendors property.
Signed-off-by: Zheng Junjie <z572@z572.online >
2025-06-23 12:31:14 +08:00
63600ebe3c
gnu: halibut: Add cpe-vendor property.
...
* gnu/packages/documentation.scm (halibut)
[properties]: Add cpe-vendor property.
Signed-off-by: Zheng Junjie <z572@z572.online >
2025-06-23 12:31:14 +08:00
3c439912d8
gnu: halibut: Improve style.
...
* gnu/packages/documentation.scm (halibut)
[description]: Reformat field to match max chars.
Signed-off-by: Zheng Junjie <z572@z572.online >
2025-06-23 12:31:13 +08:00
229674573c
cve: Add cpe-vendor and lint-hidden-cpe-vendors properties.
...
* guix/cve.scm: Exploit cpe vendors information.
(cpe->package-name): Rename to...
(cpe->package-identifier): Renamed from cpe->package-name. Use
cpe_vendor:cpe_name in place or cpe_name.
(vulnerabily-matches?): Add helper function.
(vulnerabilities->lookup-proc): Extract cpe_name for table
hashes. Add vendor and hidden-vendor arguments. Adapt condition to
pass vulnerabilities to result in the fold.
(write-cache, fetch-vulnerabilities): Update the format version.
* guix/lint.scm (package-vulnerabilities): Use additional arguments
from vulnerabilities->lookup-proc.
* tests/cve.scm (%expected-vulnerabilities): Adapt variable to changes
in guix/cve.scm.
Signed-off-by: Zheng Junjie <z572@z572.online >
2025-06-23 12:31:09 +08:00
f511be7bcc
gnu: trealla: Update to 2.74.23.
...
* gnu/packages/prolog.scm (trealla): Update to 2.74.23.
Change-Id: Iaee68925dc45e05e8309d80332c1ee1c020aef1f
2025-06-22 21:24:19 -04:00
fa75614243
gnu: dex: Enable verbose flag for tests.
...
* gnu/packages/xdisorg.scm (dex)[arguments]: Enable verbose flag for tests.
Change-Id: I05742e954c704833c032db1add9673a18e6b3e80
2025-06-22 21:20:57 -04:00
72902b4199
gnu: dex: Update to 0.10.1.
...
* gnu/packages/xdisorg.scm (dex): Update to 0.10.1.
[arguments]: Switch to G-expressions and implement tests.
[description]: Mention autostart functionality.
Change-Id: I8462ce6de80bdf46594b39caee36488fcd2cd810
Signed-off-by: jgart <jgart@dismail.de >
2025-06-22 21:20:57 -04:00
1cbe0d7db6
gnu: python-textual: Update to 3.5.0.
...
* gnu/packages/python-xyz.scm (python-textual): Update to 3.5.0.
[arguments]<#:test-flags>: Update failing tests.
[propagated-inputs]: Remove python-mdit-py-plugins. Add
python-platformdirs.
[native-inputs]: Add python-pytest-xdist.
Change-Id: I7ff7d663e223da8b7ff924a863a419be11bd478e
2025-06-22 22:04:18 -03:00
f4f6d9ac7e
gnu: python-ueberzug: Update to 18.3.1.
...
* gnu/packages/python-xyz.scm (python-ueberzug): Update to 18.3.1.
[build-system]: Use pyproject-build-system.
[arguments]: Skip the 'check' phase.
[native-inputs]: Add meson-python, pkg-config.
[inputs]: Add libxres.
[propagated-inputs]: Remove python-xlib.
[home-page]: Switch to maintained repository.
Change-Id: Ia93f8d98767e0887b3f18335a5e4bfc8d925abf7
2025-06-22 22:04:17 -03:00
73b7e4686a
gnu: python-logbook: Update to 1.8.2.
...
* gnu/packages/python-xyz.scm (python-logbook): Update to 1.8.2.
[source]: Update URI.
[build-system]: Use pyproject-build-system.
[arguments]<#:phases>: Delete unnecessary phase 'cythonize-sources'. Do
not override the 'check' phase.
[native-inputs]: Remove python-cython, python-mock,
python-pytest-cov. Add python-cython-3, python-setuptools, python-wheel.
Change-Id: I4b4c8ea60bc0ad7fdcb4d5320e5337f3ca38ed6f
2025-06-22 22:04:17 -03:00
99f85246e1
git authenticate: Do nothing when invoked from the keyring branch.
...
Fixes <https://issues.guix.gnu.org/78283 >.
* guix/scripts/git/authenticate.scm (guix-git-authenticate): Call
‘current-branch’ and do nothing if it returns the keyring branch.
Reported-by: Vagrant Cascadian <vagrant@debian.org >
Change-Id: I66c2a3f4babf68ac1df0913db6bc708ac0c7968e
2025-06-22 23:45:36 +02:00
0ec5cab132
git authenticate: Gracefully handle passing an annotated tag to ‘--end’.
...
Partly fixes <https://issues.guix.gnu.org/74583 >.
Previously, passing an annotated tag to ‘--end’, as can happen when
‘guix git authenticate’ is invoked by the pre-push hook when pushing
tags, would lead to an error:
guix git: error: Git error: the requested type does not match the type in the ODB
* guix/scripts/git/authenticate.scm (ensure-commit-id): New procedure.
(guix-git-authenticate): Use it.
* tests/guix-git-authenticate.sh: Test with $v1_2_0_annotated_tag.
Change-Id: I22e8eb665609522c80c1f0dcb9e77a46c23c0c3c
2025-06-22 23:45:36 +02:00
56eb949f3b
git authenticate: Upgrade pre-push hook with a fixed version.
...
Partly fixes <https://issues.guix.gnu.org/74583 >.
* guix/scripts/git/authenticate.scm (%pre-push-hook): New variable.
(install-hooks): Use it.
(broken-pre-push-hook?, maybe-upgrade-hooks): New procedures.
(guix-git-authenticate): Call ‘maybe-upgrade-hooks’ when ‘configured?’
returns true.
Change-Id: I39d34ab66ffe0f34170c0f562e9f97f2f69c9fdc
2025-06-22 23:45:36 +02:00
55b38ddefc
git authenticate: Remove support for Guile-Git < 0.7.0.
...
Guile-Git 0.7.0 was released in May 2024.
* guix/scripts/git/authenticate.scm (record-configuration): Remove
‘module-defined?’ condition for Guile-Git < 0.7.0.
(install-hooks): Likewise.
Change-Id: I27af82068b989d6a18ff1a66453e0a8d397ed380
2025-06-22 23:45:32 +02:00
a9548c198c
gnu: qgis: Fix build.
...
Fixing #723 .
* gnu/packages/geo.scm (python-sip-6.8-instead-of-python-sip): New procedure.
(python-pyqt+qscintilla-with-python-sip-6.8, python-sip-6.8): New variables.
(qgis)[inputs]: Add python-lxml. Replace python-pyqt+qscintilla with
python-pyqt+qscintilla-with-python-sip-6.8 and python-sip with
python-sip-6.8.
Change-Id: I0f845400012d381cb4d78aadc3b1e2a47f6c3090
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com >
2025-06-22 22:27:29 +01:00
437809ffe2
gnu: python-charset-normalizer-3: Update to 3.4.2.
...
* gnu/packages/python-xyz.scm (python-charset-normalizer-3): Update to
3.4.2.
[build-system]: Use pyproject-build-system.
[arguments] <phases>: Add 'fix-scripts.
[native-inputs]: Add python-setuptools and python-wheel.
Change-Id: I32c89a63c3fd1aaf3c323d4986808b7860c2d999
Co-authored-by: Sharlatan Hellseher <sharlatanus@gmail.com >
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com >
2025-06-22 22:02:02 +01:00
36dc401bbd
gnu: fzf: Use bashrc.d for Bash integration.
...
fzf comes with two Bash integration files.
The first, completion.bash, enables fzf-powered completion of various
types (files, variable names, processes, etc) for various commands (cat,
export, kill, etc). This is in contrast with the Bash completions most
packages ship, which are based on the bash-completion package and only
include completions for the package binaries. The bash-completion
package lazily loads completions from bash_completion.d directories when
the user invokes completion for a given command. fzf’s completion.bash
shouldn’t be installed to etc/bash_completion.d/fzf, since it doesn’t
depend on bash-completion and it supplies completions for more than just
the fzf binary. Instead, install it to the more general bashrc.d, where
users can source it so fzf-powered completions are immediately available
for common commands.
The second, key-bindings.bash, provides fzf-based history search for C-r
as well as a couple other convenient bindings. Install it to bashrc.d as
well so users can source it.
* gnu/packages/terminals.scm (fzf): [phases]{install-completions}: Use
bashrc.d for Bash integration files.
Change-Id: Ied0ec1187a04bcc74d39ee22957fc9b4573b5992
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com >
2025-06-22 21:38:04 +01:00
a706e205cf
gnu: gopls: Move to golang-apps.
...
* gnu/packages/golang-xyz.scm (gopls): Move from here ...
* gnu/packages/golang-apps.scm: ... to here.
Change-Id: I4132af631198bffe36f6defb1e5390ab1326242f
2025-06-22 21:36:44 +01:00
a599ff7a48
gnu: packages/golang-apps: Add module commentary.
...
* gnu/packages/golang-apps.scm: Comment on the purpose of this module.
Change-Id: Ia1353db23b23f2ac992f72c64dd9a139252d0107
2025-06-22 21:36:44 +01:00
cdac3642fd
gnu: Rename go-apps to golang-apps.
...
It's to follow the same naming style as other golang.scm and
golang-*.scm modules.
* gnu/packages/go-apps.scm: Rename file to golang-apps.scm
* gnu/local.mk (GNU_SYSTEM_MODULES): Rename go-apps to golang-apps.
* gnu/packages/emacs-xyz.scm: Replace used module go-apps with golang-apps.
Change-Id: I72642f2f6ea1cb3382e17b637cab52aa79d910c9
2025-06-22 21:36:44 +01:00
fa1eababe3
gnu: Add gomacro.
...
* gnu/packages/go-apps.scm (gomacro): New variable.
Change-Id: Ie3575a72baacb2ea3010d727d27f2d50749f93ea
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com >
2025-06-22 21:36:44 +01:00
8f97502396
gnu: python-diskcache: Update to 5.6.3.
...
* gnu/packages/python-xyz.scm (python-diskcache): Update to 5.6.3.
[source]: Use GitHub origin since PyPI missing docs which are needed for
tests.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add required native-inputs.
Change-Id: I169c24c02356407902a69cc4937a4761be47b6e6
2025-06-22 15:54:19 -04:00
60c6133a98
gnu: emacs-guix: Update to 0.5.2-8.66b9350.
...
* gnu/packages/emacs-xyz.scm (emacs-guix): Update to 0.5.2-8.66b9350.
[source]: Update URL.
Change-Id: Ie6ebba6ff4e070ca03de91f4e316f6e48707e37d
Signed-off-by: Ian Eure <ian@retrospec.tv >
2025-06-22 12:42:40 -07:00
1aca7d3be8
gnu: prometheus-postgres-exporter.
...
* gnu/packages/monitoring.scm (prometheus-postgres-exporter): New variable.
Change-Id: I32c922244dbd485d0b882e7b150fc8c7d5624875
Modified-by: Sharlatan Hellseher <sharlatanus@gmail.com >
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com >
2025-06-22 18:09:25 +01:00
8696eca5c0
gnu: python-pyjanitor: Update to 0.31.0.
...
* gnu/packages/python-science.scm (python-pyjanitor): Update to 0.31.0.
[arguments]<#:test-flags>: Skip tests depending on Polars. Enable
previously failing test.
<#:phases>: Delete unnecessary phase 'pandas-compat'.
Change-Id: I2991e06fafea2928bb6ea45c42624bf372da2eba
2025-06-22 12:41:00 -03:00
e660638d0d
gnu: python-pingouin: Update to 0.5.5.
...
* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.5.
[arguments]<#:test-flags>: Enable previously failing test. Skip two more
failing tests.
<#:phases>: Delete unnecessary phases 'loosen-requirements',
'remove-outdated-check', 'sklearn-compatibility'.
Change-Id: Iac44747d65c9be52831ae792a24b9cc5604c54dc
2025-06-22 12:41:00 -03:00
d32e619d47
gnu: python-simple-pid: Update to 2.0.1.
...
* gnu/packages/python-science.scm (python-simple-pid): Update to 2.0.1.
[source]: Update URI.
[build-system]: Use pyproject-build-system.
[arguments]<#:phases>: Do not override the 'check' phase.
[native-inputs]: Add python-pytest, python-setuptools, python-wheel.
Change-Id: I26c7b3097d30ac067a370c8a3a0600779d13efb6
2025-06-22 12:41:00 -03:00
4a38059258
gnu: python-pandas-flavor: Update to 0.7.0.
...
* gnu/packages/python-science.scm (python-pandas-flavor): Update to
0.7.0.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-pytest.
Change-Id: Ie582c778d84b342eab41f8bc88f2c4bb410bbbb6
2025-06-22 12:40:59 -03:00
5b983cd239
gnu: python-baycomp: Update to 1.0.3.
...
* gnu/packages/python-science.scm (python-baycomp): Update to 1.0.3.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-pytest, python-setuptools, python-wheel.
Change-Id: I2249fc981a91ebc175a5e0ff221bb6243126fb6f
2025-06-22 12:40:59 -03:00
d437b9cb46
gnu: emacs-org-roam-bibtex: Update to 0.6.2-0.b065198.
...
* gnu/packages/emacs-xyz.scm (emacs-org-roam-bibtex): Update to 0.6.2-0.b065198.
Change-Id: I6db838df4a9b120c0bfda964cf5fe1d903a1e571
Signed-off-by: jgart <jgart@dismail.de >
2025-06-22 11:29:05 -04:00
272fc9c223
gnu: pelican: Enable tests.
...
* gnu/packages/python-xyz.scm (pelican)[arguments]: Remove '#:tests?'.
<#:test-flags>: Skip three failing tests.
[native-inputs]: Add python-anyio, python-beautifulsoup4, python-lxml,
python-pytest, python-smartypants, python-typogrify.
Change-Id: Ibcbfa1a405753bfcf68028be86a90c1c318cb1b7
2025-06-22 11:21:48 -03:00
a4892265fa
gnu: pelican: Update to 4.11.0.
...
* gnu/packages/python-xyz.scm (pelican): Update to 4.11.0.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-pdm-backend.
[inputs]: Remove python-markdown, python-pytz. Add python-ordered-set,
python-tzdata, python-watchfiles.
Change-Id: I586668a17b7b646227a5bd78703fda2c9bc6fb63
2025-06-22 11:21:48 -03:00
a44710fc63
gnu: python-feedgenerator: Update to 2.1.0.
...
* gnu/packages/python-xyz.scm (python-feedgenerator): Update to 2.1.0.
[source]: Remove unnecessary snippet.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-pytest, python-pytest-cov,
python-setuptools, python-wheel.
[propagated-inputs]: Remove python-six.
Change-Id: I2451794d21c0c473183f9f90f14ad8b198883455
2025-06-22 11:21:48 -03:00
97b3b63fcd
gnu: python-scapy: Update to 2.6.1.
...
* gnu/packages/python-xyz.scm (python-scapy): Update to 2.6.1.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-setuptools, python-wheel.
Change-Id: I56f0f87e0eb1a49bd79cad6f36451dfdd6eb78e0
2025-06-22 11:21:44 -03:00
f731d71846
gnu: tetoolkit: Run guix style
...
* gnu/packages/bioinformatics.scm (tetoolkit): Run guix style.
Change-Id: I5f4c6a647a41a9d60e5bc1d2b4fbee045626dc12
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com >
2025-06-22 12:54:11 +01:00
09a3e09fa8
gnu: tetoolkit: Use pyproject-build-system.
...
* gnu/packages/bioinformatics.scm (tetoolkit): [build-system]: Use
pyproject.
[native-inputs]: Add python-setuptools and python-wheel.
Change-Id: I4fce644bee87c5d6c64a9a3cdf3581a1bae12909
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com >
2025-06-22 12:54:11 +01:00
825ceadb5f
gnu: tbsp: Run guix style
...
* gnu/packages/bioinformatics.scm (tbsp): Run guix style.
Change-Id: I3301f95963aac1f47b28e86a40374df2171732f8
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com >
2025-06-22 12:54:11 +01:00
8ed2fcd5aa
gnu: tbsp: Use pyproject-build-system.
...
* gnu/packages/bioinformatics.scm (tbsp): [build-system]: Use
pyproject.
[native-inputs]: Add python-setuptools and python-wheel.
Change-Id: I6d454d95050862378b7f06c09a42994efd9875a6
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com >
2025-06-22 12:54:11 +01:00
abeb7cd9fa
gnu: stpipeline: Run guix style
...
* gnu/packages/bioinformatics.scm (stpipeline): Run guix style.
Change-Id: I341e0b7adce82c079b1dcff94a2128d3e1773a4a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com >
2025-06-22 12:54:10 +01:00
3bb992a357
gnu: stpipeline: Use pyproject-build-system.
...
* gnu/packages/bioinformatics.scm (stpipeline): [build-system]: Use
pyproject.
[native-inputs]: Add python-setuptools and python-wheel.
Change-Id: Ibfeea2feb08878d14becf15be5408689ba4c7c3f
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com >
2025-06-22 12:54:10 +01:00
18d5c62c6a
gnu: python-vireosnp: Run guix style
...
* gnu/packages/bioinformatics.scm (python-vireosnp): Run guix style.
Change-Id: I301322fbfa45b3ef7cb1c82eadc60aa1de33d442
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com >
2025-06-22 12:54:10 +01:00
b7ec773e5a
gnu: python-vireosnp: Use pyproject-build-system.
...
* gnu/packages/bioinformatics.scm (python-vireosnp): [build-system]: Use
pyproject.
[native-inputs]: Add python-setuptools and python-wheel.
Change-Id: Id49911001b3672402a17f0902a7e5a565168ab61
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com >
2025-06-22 12:54:10 +01:00
002d6e4109
gnu: python-velocyto: Run guix style
...
* gnu/packages/bioinformatics.scm (python-velocyto): Run guix style.
Change-Id: Ieda2b56cf13ae519e539ecef286ef63595532a7a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com >
2025-06-22 12:54:10 +01:00
5853163fbf
gnu: python-velocyto: Use pyproject-build-system.
...
* gnu/packages/bioinformatics.scm (python-velocyto): [build-system]: Use
pyproject.
[native-inputs]: Add python-setuptools and python-wheel.
Change-Id: Ie5e605136a7eb7a1acd3850313f2796bf7c83c31
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com >
2025-06-22 12:54:10 +01:00
Nicolas Graves via Guix-patches via