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535 Commits

Author SHA1 Message Date
Danny Milosavljevic
d3e7490a5c gnu: python-pystog: Move to (gnu packages physics). 
* gnu/packages/python-science.scm (python-pystog): Move from here…
* gnu/packages/physics.scm (python-pystog): …to here.

Change-Id: Ic2051954eb1c126bde11b2d4545d14065cd8b16b
 2026-02-21 21:52:39 +01:00
Danny Milosavljevic
8154e1d07b gnu: python-pycifrw: Move to (gnu packages physics). 
* gnu/packages/python-science.scm (python-pycifrw): Move from here…
* gnu/packages/physics.scm (python-pycifrw): …to here.

Change-Id: I5b0f5ccb148b555d898a4584da9eb6897ad3126e
 2026-02-21 21:52:39 +01:00
Danny Milosavljevic
2e7ae98c24 gnu: python-brille: Move to (gnu packages physics). 
* gnu/packages/python-science.scm (python-brille): Move from here…
* gnu/packages/physics.scm (python-brille): …to here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add reference to that file.
* etc/teams.scm (science): Add reference to that file.

Change-Id: I207940441fb4406fb034d5582ba9f5517544179b
 2026-02-21 21:52:38 +01:00
Andreas Enge
0ae891a57d gnu: python-vedo: Update to 2025.5.4. 
* gnu/packages/python-science.scm (python-vedo): Update to 2025.5.4.

Change-Id: Ide16096a2bde0460c62e62b5aa260a5d557e7fc7
 2026-02-13 14:27:37 +01:00
Andreas Enge
03c73b3995 gnu: vtk: Update to 9.4.2 and add vtk-9.3. 
* gnu/packages/image-processing.scm (vtk): Update to 9.4.2.
[origin]: Adapt snippet.
(vtk-9.3): Add back the previous version.
(opencv)[inputs],
* gnu/packages/geo.scm (ogs-serial)[inputs],
* gnu/packages/python-science.scm (python-pyvista)[inputs]: Replace vtk
by vtk-9.3.

Change-Id: I1a567bc30c7845fdd647db0f93cef2cafe1ced76
 2026-02-13 11:46:52 +01:00
Danny Milosavljevic
78b3860f48 gnu: Add python-quasielasticbayes. 
* gnu/packages/python-science.scm (python-quasielasticbayes): New variable.

Change-Id: I4a80e53c2f4c058b8678b599d9a4a3d7752efedb
 2026-02-12 18:58:12 +01:00
Danny Milosavljevic
91ea95eff8 gnu: Add python-euphonic. 
* gnu/packages/python-science.scm (python-euphonic): New variable.

Change-Id: I10ce0b9193e5d342ead24b9e16daefd9d16d40eb
 2026-02-12 18:58:12 +01:00
Danny Milosavljevic
51b803ec26 gnu: Add python-pycifrw. 
* gnu/packages/python-science.scm (python-pycifrw): New variable.

Change-Id: Iaee90ca32d519f1b621e6323e636bfcf231a61f1
 2026-02-12 18:58:11 +01:00
Danny Milosavljevic
b6523e1a20 gnu: Add python-pystog. 
* gnu/packages/python-science.scm (python-pystog): New variable.

Change-Id: I75eb64488c6a190aebee221bb7387dde2c0797c7
 2026-02-12 18:58:10 +01:00
Danny Milosavljevic
daaae8ed29 gnu: Add python-seekpath. 
* gnu/packages/python-science.scm (python-seekpath): New variable.

Change-Id: I8892e74d89112d8927c0a1d223962b9e86742f8b
 2026-02-12 18:58:10 +01:00
Danny Milosavljevic
de73c0c7f3 gnu: Add python-spglib. 
* gnu/packages/python-science.scm (python-spglib): New variable.

Change-Id: I425a7906fe4d9eaa21e7597c6ace97650e58b53a
 2026-02-12 18:58:10 +01:00
Danny Milosavljevic
8516a200ac gnu: Add python-brille. 
* gnu/packages/python-science.scm (python-brille): New variable.

Change-Id: I39db7aff28c9d3d80c1cd404ee91fd1ec5fc89cd
 2026-02-12 18:58:09 +01:00
Nicolas Graves
9999f19742 gnu: python-scikit-surprise: Relocate phase 'set-home. 
* gnu/packages/python-science.scm (python-scikit-surprise)[arguments]
<#:phases>: Relocate phase 'set-home.

Change-Id: Id6e5993e167f1f61865fcfe31caba0bce2d5263a
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:57 +01:00
Nicolas Graves
200ffe6497 gnu: snakemake: Update to 8.30.0. 
* gnu/packages/python-science.scm (snakemake): Update to 8.30.0.
[arguments]<#:test-flags>: Refresh them.
[native-inputs]: Remove python-wheel.

Change-Id: I5b509cdf177224a71c313fed32f913cca85410d6
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Nicolas Graves
ceed5daa2b gnu: python-snakemake-interface-storage-plugins: Update to 3.6.0. 
* gnu/packages/python-science.scm (python-snakemake-interface-storage-plugins): Update to 3.6.0.
[arguments]<#:phases>: Add phase 'relax-requirements.

Change-Id: I5e0028168d261ba12dbce846253ca4c8274710d7
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:56 +01:00
Nicolas Graves
f77310c3ba gnu: pyre: Switch to pyproject. 
* gnu/packages/python-science.scm (pyre):
[arguments]<#:imported-modules, #:modules, #:phases>: Switch to
pyproject-build-system.

Change-Id: Iba843ba453ab2ed6958b546f27724d1cf3392f2c
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:50 +01:00
Sharlatan Hellseher
7dd5a44161 gnu: python-plotly: Use python-pytest-8. 
* gnu/packages/python-science.scm (python-plotly):
  [native-inputs]: Remove python-pytest; add python-pytest-8.

Change-Id: I6ae645843e661c60c05e40823a6c0b0330144d35
 2026-02-07 12:28:48 +01:00
Sharlatan Hellseher
f815f0796f gnu: python-meson-python: Rename to python-meson. 
This change adjusts the package name to follow Guix naming convention
for Python packages, see:
<https://codeberg.org/guix/guix/issues/5917#issuecomment-10168830>.

* gnu/packages/python-xyz.scm (python-meson): New variable.
(python-meson-python): Deprecate variable.

* gnu/packages/algebra.scm (python-flint):
* gnu/packages/astronomy.scm (python-pixell)
* gnu/packages/finance.scm (beancount)
* gnu/packages/game-development.scm (python-pygame-ce)
* gnu/packages/machine-learning.scm (python-scikit-learn)
* gnu/packages/python-science.scm (python-pandas, python-scikit-image,
python-scikit-misc, python-scipy, python-scs)
* gnu/packages/python-xyz.scm (python-contourpy, python-cysignals,
python-dbus-python, python-matplotlib, python-numpy, python-numpy-1,
python-pywavelets, python-siphash24)
[native-inputs]: Remove python-meson-python; add python-meson.

Fixes: guix/guix#5917
Change-Id: I0a9d53a164e542831fb5c3292ba71583f30d3b74
 2026-02-07 12:28:44 +01:00
Sharlatan Hellseher
28a0b3221c gnu: python-scikit-misc: Adjust inputs. 
* gnu/packages/python-science.scm (python-scikit-misc):
[propagated-inputs]: Remove meson-python and python-spin.
[native-inputs]: Remove pkg-config, python-cython, python-numpy,
python-numpydoc, and python-wheel; add python-spin.

Change-Id: If2a9f9f3a003d2edc960ca5382d66fba604defef
 2026-02-07 12:28:43 +01:00
Sharlatan Hellseher
5a200d8651 gnu: python-scs: Adjust native inputs. 
* gnu/packages/python-science.scm (python-scs)[native-inputs]: Remove
meson-python; add python-meson-python.

Change-Id: I903af2c7c8a06cd616c39feb37ba7b42ba30bc0e
 2026-02-07 12:28:43 +01:00
Sharlatan Hellseher
8920d05cd1 gnu: python-scikit-image: Adjust native inputs. 
* gnu/packages/python-science.scm (python-scikit-image):
[native-inputs]: Remove meson-python and python-cython; add
python-meson-python.

Change-Id: Ic273fd889d108ed896d753702a5ef977ade3a5f9
 2026-02-07 12:28:43 +01:00
Sharlatan Hellseher
e50bf1b431 gnu: python-scipy: Adjust inputs and native inputs. 
* gnu/packages/python-science.scm (python-scipy):
[phases]{relax-requirements}: Remove phase.
[inputs]: Remove boost; add boost-1.88.
[native-inputs]: Remove meson-python and python-cython; add
python-meson-python.

Change-Id: Ic9534456c52f0a93086ad9275c2e4ca2f93661a9
 2026-02-07 12:28:42 +01:00
Sharlatan Hellseher
2b911b764b gnu: python-pandas: Adjust native inputs. 
* gnu/packages/python-science.scm (python-pandas)[native-inputs]:
Remove meson and meson-python; add python-meson-python.

Change-Id: I5f947f9a81e6931261ad16a3648fc1350d50c7f9
 2026-02-07 12:28:42 +01:00
Sharlatan Hellseher
ad11e8d08b gnu: python-numpoly: Update to 1.3.9. 
* gnu/packages/python-science.scm (python-numpoly): Update to 1.3.9.
[source] <commit>: Upstream tagging style by removing "v" from the tag.
[phases]{set-version}: New phase.
[arguments] <test-flags>: Run all tests.

Change-Id: I601ed70b8f4e65782b6bbe98ea7ddc7f91a0b60b
 2026-02-07 12:28:40 +01:00
Sharlatan Hellseher
447a74cedd gnu: python-tornado: Update to 6.4.2. 
* gnu/packages/python-web.scm (python-tornado): Absorb definition of
python-tornado-6.
(python-tornado-5): New variable, inherit from python-tornado.
(python-tornado-6): Deprecate variable.

* gnu/packages/jupyter.scm (python-jupyterlite-core)
* gnu/packages/jupyter.scm (python-pytest-jupyter)
* gnu/packages/jupyter.scm (python-voila)
* gnu/packages/python-xyz.scm (python-pypugjs)
* gnu/packages/python-xyz.scm (python-tenacity):
[native-inputs]: Remove python-tornado-6; add python-tornado.

* gnu/packages/machine-learning.scm (kaldi-gstreamer-server):
[inputs]: Remove python-tornado-6; add python-tornado.

* gnu/packages/bioinformatics.scm (python-bulkvis)
* gnu/packages/jupyter.scm (python-ipykernel)
* gnu/packages/jupyter.scm (python-jupyter-client)
* gnu/packages/jupyter.scm (python-jupyter-client-7)
* gnu/packages/jupyter.scm (python-jupyter-server)
* gnu/packages/jupyter.scm (python-nbclassic)
* gnu/packages/jupyter.scm (python-nbdime)
* gnu/packages/jupyter.scm (python-notebook)
* gnu/packages/jupyter.scm (python-terminado)
* gnu/packages/python-check.scm (python-pytest-tornasync)
* gnu/packages/python-science.scm (python-distributed)
* gnu/packages/python-xyz.scm (python-bokeh)
* gnu/packages/python-xyz.scm (python-ipyparallel-bootstrap)
* gnu/packages/python-xyz.scm (python-nbconvert)
[propagated-inputs]: Remove python-tornado-6; add python-tornado.

Change-Id: I437d73a0711c88e329666b6bc853f6332c277098
 2026-02-07 12:28:38 +01:00
Nicolas Graves
8faee401f6 gnu: python-scikit-build-core: Drop python-exceptiongroup input. 
* gnu/packages/python-science.scm (python-scikit-build-core)
[propagated-inputs]: Drop python-exceptiongroup.

Change-Id: Id6e5491f3bab5bfbe4719f5313ff21d72e44d232
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:38 +01:00
Nicolas Graves
1bf91ac505 gnu: Drop setting SETUPTOOLS_SCM_PRETEND_VERSION in some packages. 
* gnu/packages/astronomy.scm (python-asdf-compression)
(python-asdf-fits-schemas, python-cdflib, python-sunkit-spex):
* gnu/packages/bioinformatics.scm (python-whatshap, python-mudata)
(python-pyfaidx, python-ctxcore, scvelo):
* gnu/packages/bootloaders.scm (dtc):
* gnu/packages/check.scm (python-pytest-xdist, python-pytest-forked):
* gnu/packages/databases.scm (python-fastparquet):
* gnu/packages/disk.scm (greaseweazle-host-tools):
* gnu/packages/docker.scm (python-docker):
* gnu/packages/finance.scm (python-ledgerblue):
* gnu/packages/fontutils.scm (python-compreffor)
(python-defcon-bootstrap, nototools):
* gnu/packages/games.scm (sc-controller):
* gnu/packages/machine-learning.scm (python-botorch):
* gnu/packages/music.scm (python-pylast):
* gnu/packages/package-management.scm (conda):
* gnu/packages/python-build.scm (python-exceptiongroup):
* gnu/packages/python-science.scm (python-dask-image)
(python-distributed, python-osqp):
* gnu/packages/python-web.scm (python-branca, python-smart-open):
* gnu/packages/python-xyz.scm (python-conda-content-trust)
(python-menuinst, python-isort, python-pyclibrary)
(python-pyclipper, python-csb43-0.10, python-orgparse)
(python-deepmerge, python-scooby, python-uuid6):
* gnu/packages/radio.scm (nanovna-saver):
* gnu/packages/sphinx.scm (python-sphinx-autodoc-typehints):
[arguments]: Remove phases setting SETUPTOOLS_SCM_PRETEND_VERSION.

* gnu/packages/python-xyz.scm (python-bagit)
[arguments]: Refactor manual 'check phase into #:test-flags.

Change-Id: I0713d6603f982a7f956d02fc3b85a384f4dd6ce4
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:37 +01:00
Nicolas Graves
84d448688a gnu: Remove python-pip native-input from some packages. 
Remove python-pip from [native-inputs] in the following packages as not
required for build/tests/install:

* gnu/packages/python-science.scm: (python-scikit-build-core)
* gnu/packages/python-xyz.scm: (python-pypandoc)
* gnu/packages/shells.scm: (xonsh)

Change-Id: I26579cf868b1e56d075b5c8d8ef7914feee44bcb
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:36 +01:00
Nicolas Graves
047a9dc43b gnu: Remove python-coveralls native-input from some packages. 
Remove python-coveralls from [native-inputs] in the following packages
as not required for build/tests/install:

* gnu/packages/python-science.scm (python-trimesh)
* gnu/packages/python-xyz.scm (python-affine)

Change-Id: Ia2beeec4ebc4e651f0a079efb644afa8026d53de
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:35 +01:00
Sharlatan Hellseher
1574c37720 gnu: Remove python-scikit-image-next. 
* gnu/packages/python-science.scm (python-scikit-image-next): Delete variable.

Change-Id: Ieecd9370c75ba24ea1740615fc950d9b1ffcb216
 2026-02-07 12:28:33 +01:00
Sharlatan Hellseher
4e101aeeac gnu: Remove python-pandas-2. 
* gnu/packages/python-science.scm (python-pandas-2): Delete variable.

Change-Id: Ia08c92f284f3bdb5849967376d5cfc38c61c7703
 2026-02-07 12:28:25 +01:00
Nicolas Graves
93b40d330f build-system/pyproject: Remove uneeded use of pyproject-guile-json. 
* gnu/packages/bioinformatics.scm (python-bed-reader, python-gseapy)
* gnu/packages/chemistry.scm (gemmi, ringdecomposerlib, rdkit)
* gnu/packages/cinnamon.scm (libxapp)
* gnu/packages/cups.scm (hplip)
* gnu/packages/djvu.scm (ocrodjvu)
* gnu/packages/finance.scm (electron-cash)
* gnu/packages/gnome.scm (terminator)
* gnu/packages/image-processing.scm (insight-toolkit)
* gnu/packages/machine-learning.scm (onnxruntime, tensorflow-lite,
koboldcpp, python-tokenizers)
* gnu/packages/maths.scm (gmsh, z3, fp16)
* gnu/packages/music.scm (quodlibet)
* gnu/packages/photo.scm (lensfun)
* gnu/packages/python-science.scm (python-clarabel)
* gnu/packages/python-xyz.scm (python-orjson, python-libcst,
python-rpds-py, python-streamtracer, python-tiktoken)
* gnu/packages/rpm.scm (createrepo-c)
* gnu/packages/rust-apps.scm (maturin)
* gnu/packages/sugar.scm (sugar, sugar-datastore)
* gnu/packages/version-control.scm (mercurial, hg-commitsigs)
* gnu/packages/vpn.scm (python-proton-vpn-local-agent)
[arguments]<#:phases>: Remove uneeded use of pyproject-guile-json
extension.

* gnu/packages/python-xyz.scm (python-streamtracer)[arguments]
<#:phases>: Also rewrite 'check phase replacement.

Change-Id: I779c354120ada3d94f07a127b9ec5011e73254c2
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
 2026-02-07 12:28:18 +01:00
Sharlatan Hellseher
c8604b0d33 gnu: Add python-cmasher. 
* gnu/packages/python-science.scm (python-cmasher): New variable.

Change-Id: I74c8ad6f9170b34b8c4fd1760c2ca3ba90d2a1f5
 2026-01-30 09:10:13 +00:00
Sharlatan Hellseher
c7eb8d113d gnu: python-pyjanitor: Update to 0.32.5. 
* gnu/packages/python-science.scm (python-pyjanitor): Update to 0.32.5.
[arguments] <test-flags>: Rework ignored/skipped tests.
[propagated-inputs]: Remove python-requests.
[native-inputs]: Add python-openpyxl and python-requests.
[synopsys]: pandas->Pandas.

Change-Id: I12f3f1f6ab84d63882325103e8c729d44656c97c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:52 +01:00
Sharlatan Hellseher
79a8ef238e gnu: python-pandas-flavor: Update to 0.8.1. 
* gnu/packages/python-science.scm (python-pandas-flavor): Update to 0.8.1.
[phases]{fix-pytest-config}: New phase.
[propagated-inputs]: Remove python-lazy-loader and python-packaging.
[native-inputs]: Add python-setuptools and python-setuptools-scm.

Change-Id: I1f1325350f77ed61146f32da5bdc81aad1daec27
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:51 +01:00
Sören Tempel
41e8641379 gnu: python-scikit-misc: Don't propagate python-numpydoc. 
* gnu/packages/python-science.scm (python-scikit-misc)
[propagated-inputs]: Remove python-numpydoc.
[native-inputs]: Add python-numpydoc.

Change-Id: I9f3d3550789dd2943f496d90f59a063ac7df5e97
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:38 +01:00
Sören Tempel
766ac5a306 gnu: python-pynetdicom: Don't propagate python-numpydoc. 
* gnu/packages/python-science.scm (python-pynetdicom)
[propagated-inputs]: Remove python-numpydoc.
[native-inputs]: Add python-numpydoc.

Change-Id: Ib0bc20a289972af1d346f38213413c6930218ef0
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:37 +01:00
Nicolas Graves
8ec85a9ddf gnu: python-ruffus: Switch to pyproject. 
* gnu/packages/python-science.scm (python-ruffus):
[build-system]: Switch to pyproject-build-system.
[arguments]<#:phases>: Improve style.  Improve 'check phase.
[native-inputs]: Add python-setuptools.

Change-Id: If6607ce5db313c97d5aaff062ac8bfa4b55d5dee
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:30 +01:00
Nicolas Graves
e42ad05e32 gnu: python-geosketch: Update to 1.3. 
* gnu/packages/python-science.scm (python-geosketch): Update to 1.3.
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[arguments]<#:tests>: Ignore them.
[native-inputs]: Add python-setuptools.

Change-Id: Ib86bb1a690585d925f3cd7ba801e89e04273d8e1
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:23:29 +01:00
Nicolas Graves
430b98bfaf gnu: python-pyvista: Ignore failing test. 
* gnu/packages/python-science.scm (python-pyvista)[arguments]
<#:test-flags>: Ignore failing test.

Change-Id: I0dba730e92c7fd7e9d7d6273bba3b5e7646278c2
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:38 +01:00
Nicolas Graves
c2a6e6acd9 gnu: python-pyts: Update to 0.13.0-0.4f3d97b. 
* gnu/packages/python-science.scm (python-pyts): Update to 0.13.0-0.4f3d97b.
[source]: Switch to git-fetch.
[native-inputs]: Remove python-wheel.
[description]: Improve it.

Change-Id: I64947107888826ad3db8cf1e2e4d3790c6a3e070
Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:37 +01:00
Sharlatan Hellseher
f09b06229d gnu: python-qutip: Update to 5.2.2. 
* gnu/packages/python-science.scm (python-qutip): Update to 5.2.2.
[arguments] <test-flags>: Rework skipped/ignored tests.
<phases>: Use default 'check; add 'remove-local-source.
[propagated-inputs]: Add python-cvxopt, python-cvxpy, python-mpi4py,
python-mpmath, and python-tqdm.
[native-inputs]: Remove python-numpy, python-packaging, python-scipy,
and python-wheel; add python-pytest-rerunfailures.

Change-Id: I1ee08658e6a7c6ef2c6b42b9d121113dedad04f7
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:26 +01:00
Sharlatan Hellseher
60b2a82ea1 gnu: python-pytensor: Update to 2.36.3. 
* gnu/packages/python-science.scm (python-pytensor): Update to 2.36.3.
[arguments] <test-flags>: Add option to skip/disable benchmark tests and
rework skipped tests.
[native-inputs]: Add python-pytest-benchmark and python-pytest-xdist.

Change-Id: I9c3c42c21091524741ccef55e4698b59e818512d
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:16 +01:00
Sharlatan Hellseher
26436fba55 gnu: python-pingouin: Fix tests. 
* gnu/packages/python-science.scm (python-pingouin):
[arguments] <test-flags>: Rework skipped tests.
<phases>: Add 'relax-requirements.
[native-inputs]: Remove python-pytest-cov; add python-setuptools.

Change-Id: If45e91fabbd479819731041c09dd6e1e561774d6
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:12 +01:00
Sharlatan Hellseher
7161915f03 gnu: python-scikit-survival: Fix indentation. 
* gnu/packages/python-science.scm (python-scikit-survival): Fix indentation.

Change-Id: Iff0ab38a0b484938613df08ffb0fbd83da489289
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:10 +01:00
Sharlatan Hellseher
2d73089676 gnu: python-scikit-survival: Update to 0.26.0. 
* gnu/packages/python-science.scm (python-scikit-survival): Update to 0.26.0.
[native-inputs]: Add python-pytest-xdist.

Change-Id: If92ba627c894cb65976b7687062e738656b06e96
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:10 +01:00
Sharlatan Hellseher
b73f110a19 gnu: Remove python-dask-expr. 
* gnu/packages/python-science.scm (python-dask/bootstrap)
(python-dask-expr): Delete variables.

Fixes: guix/guix#4766
Change-Id: I8243329353fe41b0ffff35fd4383a9a09047cd52
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:09 +01:00
Sharlatan Hellseher
0211e3228e gnu: Remove python-statannot. 
A message from upstream: "This repository is not maintained anymore. I
recommend using the forked package trevismd/statannotations, which has a
cleaner API and further extends the functionalities of statannot."

* gnu/packages/python-science.scm (python-statannot): Delete variable.

Fixes: guix/guix#5355
Change-Id: Ib3347ff2077f62d4e97c0f9dc437b419d260c4b5
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:22:04 +01:00
Sharlatan Hellseher
633c46178f gnu: python-pandas-stubs: Update to 2.3.3.251219. 
* gnu/packages/python-science.scm (python-pandas-stubs): Update to 2.3.3.251219.
[arguments]: Drop all but 2 skipped tests.
[propagated-inputs]: Add python-numpy.
[native-inputs]: Remove python-tables, which, xclip,
xorg-server-for-tests, and xsel; add python-beautifulsoup4,
python-fsspec, python-html5lib, python-jinja2, python-loguru,
python-mypy, python-numexpr, python-openpyxl, python-typing-extensions,
python-xlrd, python-xlsxwriter, and tzdata-for-tests.

Change-Id: I7b7b85c1ce9b1e575069a79321db4ff515372942
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:53 +01:00
Sharlatan Hellseher
ffbac2a24c gnu: python-narwhals: Update to 2.15.0. 
* gnu/packages/python-science.scm (python-narwhals): Update to 2.15.0.
[propagated-inputs]: Add python-duckdb, python-packaging, and python-rich.
[native-inputs]: Remove python-duckdb.

Change-Id: I0af82e4cbe2b3c2b3ae3803b77cde5f6c921a1a6
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:47 +01:00