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170348 Commits

Author SHA1 Message Date
Ricardo Wurmus ddadd8f3b5 gnu: Add r-vtreat. 
* gnu/packages/cran.scm (r-vtreat): New variable.

Change-Id: I6946e1df84d1b1a7192111f78d9d91a4c2f62c15
 2026-03-07 11:57:37 +01:00
Ricardo Wurmus 12598e0399 gnu: Add r-wrapr. 
* gnu/packages/cran.scm (r-wrapr): New variable.

Change-Id: I1136901ffc75e22cab13e2e1776347438c77c00d
 2026-03-07 11:57:36 +01:00
Ricardo Wurmus 385c3e0208 gnu: Add r-doe-base. 
* gnu/packages/cran.scm (r-doe-base): New variable.

Change-Id: Ic0a57453a3281d020025ad700c8a5295cddff97e
 2026-03-07 11:57:36 +01:00
Ricardo Wurmus bdb8bf0b91 gnu: Add r-conf-design. 
* gnu/packages/cran.scm (r-conf-design): New variable.

Change-Id: I2c75278f2e08830fb8fc83576ce418536d8da773
 2026-03-07 11:57:36 +01:00
Ricardo Wurmus 9d6313f064 gnu: Add r-numbers. 
* gnu/packages/cran.scm (r-numbers): New variable.

Change-Id: I5be2d90c924e634f0907da8e31487bf890e62d75
 2026-03-07 11:57:36 +01:00
Laurent Gatto 39258e011e gnu: Add r-scpdata. 
* gnu/packages/bioconductor.scm (r-scpdata): New variable.

Change-Id: Ia1dbede5d8b29bc771b16e8efa08880d8a5c2ab6
 2026-03-07 11:57:36 +01:00
Laurent Gatto b63a857c57 gnu: Add r-scp. 
* gnu/packages/bioconductor.scm (r-scp): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: Id0ae426756e3ad77a120069ce6ec6f1841437bcc
 2026-03-07 11:57:36 +01:00
Laurent Gatto eaab307c5c gnu: Add r-msdatahub. 
* gnu/packages/bioconductor.scm (r-msdatahub): New variable.

Change-Id: I63977e3c950b122c014108683e84aefa51972064
 2026-03-07 11:57:36 +01:00
Ricardo Wurmus d2079b3643 gnu: r-mlr3cluster: Disable one test. 
* gnu/packages/cran.scm (r-mlr3cluster)[arguments]: Skip one test.

Change-Id: I3807944c1e152cc8b341b3b0db2468a8cdcb5008
 2026-03-07 11:57:36 +01:00
Ricardo Wurmus de3df4a1a0 gnu: r-aster: Disable vignettes. 
* gnu/packages/cran.scm (r-aster)[arguments]: Only run tests.

Change-Id: Ic41fd15cc84ff1b19cf4b5e5fe8d5efdc92aa9ac
 2026-03-07 11:57:36 +01:00
Ricardo Wurmus 5fa6a48f34 gnu: r-antiword: Update to 1.3.5. 
* gnu/packages/cran.scm (r-antiword): Update to 1.3.5.

Change-Id: I27756dff949a3770ebb5fa77f84e719755c58ae5
 2026-03-07 11:57:36 +01:00
Ricardo Wurmus ae42df5e95 gnu: r-bbotk: Update to 1.9.0. 
* gnu/packages/cran.scm (r-bbotk): Update to 1.9.0.
[native-inputs]: Add r-processx.

Change-Id: I30b2bf614b735d15910b4ada2f3b8c3af15cf340
 2026-03-07 11:57:35 +01:00
Ricardo Wurmus dec734b79c gnu: r-mlr3: Update to 1.5.0. 
* gnu/packages/cran.scm (r-mlr3): Update to 1.5.0.

Change-Id: I32883bb902205cd588898b3bae70d0de7ab5ca94
 2026-03-07 11:57:35 +01:00
Ricardo Wurmus ad3f600de7 gnu: r-mlr3misc: Update to 0.21.0. 
* gnu/packages/cran.scm (r-mlr3misc): Update to 0.21.0.

Change-Id: Ifcb91f128f180190bf095e2b33b8152d34aa4630
 2026-03-07 11:57:35 +01:00
Ricardo Wurmus 2d278cd633 gnu: r-mlr3mbo: Update to 1.0.0. 
* gnu/packages/cran.scm (r-mlr3mbo): Update to 1.0.0.
[native-inputs]: Remove r-mlr3pipelines; add r-nloptr.

Change-Id: I558b4180a1406f50aadcaa2dac9e1afe0f66680d
 2026-03-07 11:57:35 +01:00
Ricardo Wurmus c7fff0f04c gnu: r-tidypredict: Update to 1.1.0. 
* gnu/packages/cran.scm (r-tidypredict): Update to 1.1.0.
[native-inputs]: Add r-dbi, r-lightgbm, r-rpart, r-rsqlite, r-survival, and r-withr.

Change-Id: Ib499a5a5c67b2dd88b058322b3edc91c294cab2f
 2026-03-07 11:57:35 +01:00
Ricardo Wurmus 19173b61fa gnu: r-emojifont: Update to 0.6.0. 
* gnu/packages/cran.scm (r-emojifont): Update to 0.6.0.
[propagated-inputs]: Add r-rlang.
[native-inputs]: Remove r-knitr; add r-quarto.

Change-Id: Ib86028d87f6b2db48b2e45333b0a9f6874c68d38
 2026-03-07 11:57:35 +01:00
Ricardo Wurmus c8a52fdadf gnu: r-tweedie: Update to 3.0.17. 
* gnu/packages/cran.scm (r-tweedie): Update to 3.0.17.

Change-Id: I780180dfee645a8eca20e52819c1a9abce4747ec
 2026-03-07 11:57:35 +01:00
Ricardo Wurmus 7324348ad4 gnu: r-magick: Update to 2.9.1. 
* gnu/packages/cran.scm (r-magick): Update to 2.9.1.

Change-Id: I1d007a844586aa47c2224c9c42d54c998a02d7a9
 2026-03-07 11:57:35 +01:00
Ricardo Wurmus 03c49ae43b gnu: r-xts: Update to 0.14.2. 
* gnu/packages/cran.scm (r-xts): Update to 0.14.2.
[native-inputs]: Add r-tinytest and tzdata-for-tests.
[arguments]: Add phase 'set-timezone.

Change-Id: If1ae772d3aad691c023725733a0bff0151c31fd1
 2026-03-07 11:57:35 +01:00
Ricardo Wurmus 6a68f90cde gnu: r-rmumps: Update to 5.2.1-37. 
* gnu/packages/cran.scm (r-rmumps): Update to 5.2.1-37.

Change-Id: I042dc3ceceffd94805f7d239173ddcc61131d22a
 2026-03-07 11:57:35 +01:00
Ricardo Wurmus bbb0d98023 gnu: r-rcppnumerical: Update to 0.7-0. 
* gnu/packages/cran.scm (r-rcppnumerical): Update to 0.7-0.

Change-Id: If793ee01b4c636bfebad32194fa7623513e16602
 2026-03-07 11:57:35 +01:00
Ricardo Wurmus b98e5688d0 gnu: r-openssl: Update to 2.3.5. 
* gnu/packages/cran.scm (r-openssl): Update to 2.3.5.

Change-Id: Ic71d476b24aeef188e7efc3cf1f8ac689ff11f86
 2026-03-07 11:57:34 +01:00
Ricardo Wurmus 618c3ef6ce gnu: r-countrycode: Update to 1.7.0. 
* gnu/packages/cran.scm (r-countrycode): Update to 1.7.0.

Change-Id: I8696fa264534a38439845b732eb135a874a00160
 2026-03-07 11:57:34 +01:00
Ricardo Wurmus 0bd81e3871 gnu: r-scran: Update to 1.38.1. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.38.1.

Change-Id: If3516e5464c47a7402428f01b848ca290c4e9612
 2026-03-07 11:57:34 +01:00
Ricardo Wurmus cb9cd82cda gnu: r-scdblfinder: Update to 1.24.10. 
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.24.10.

Change-Id: Id7d60f86558fb0998b866886759544928d268e35
 2026-03-07 11:57:34 +01:00
Ricardo Wurmus 2c1330d185 gnu: r-mutationalpatterns: Update to 3.20.1. 
* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.20.1.

Change-Id: I7f6dc949b0961b5d07904e590d9729bca042a195
 2026-03-07 11:57:34 +01:00
Ricardo Wurmus a4d999679d gnu: r-gsva: Update to 2.4.5. 
* gnu/packages/bioconductor.scm (r-gsva): Update to 2.4.5.

Change-Id: I34e86dc4ef74c977488209fa42afafb889ac43de
 2026-03-07 11:57:34 +01:00
Ricardo Wurmus f68c9af97e gnu: r-systempiperdata: Update to 2.14.5. 
* gnu/packages/bioconductor.scm (r-systempiperdata): Update to 2.14.5.

Change-Id: I619ea050473642025b458d76b0e68e65e2b3ba08
 2026-03-07 11:57:34 +01:00
Ricardo Wurmus 2fcfbdf8fc gnu: r-illuminahumanmethylationepicv2manifest: Update to 1.0.1. 
* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicv2manifest): Update to 1.0.1.

Change-Id: I237bfef2be1f9be21fbc93de5418a6874f44b8e9
 2026-03-07 11:57:34 +01:00
Ricardo Wurmus 28c5a19bbf gnu: r-illuminahumanmethylationepicv2anno-20a1-hg38: Update to 1.0.1. 
* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicv2anno-20a1-hg38): Update to 1.0.1.

Change-Id: Icc6a9069665b60c5bc76ad47412d45d04e337b09
 2026-03-07 11:57:34 +01:00
Ricardo Wurmus 5022deef41 gnu: r-survcomp: Update to 1.60.1. 
* gnu/packages/bioconductor.scm (r-survcomp): Update to 1.60.1.
[native-inputs]: Add r-biobase, r-biocmanager, and r-xtable.

Change-Id: Ia31f7785ac5510f78b68ca080e144fbd4db7e727
 2026-03-07 11:57:34 +01:00
Ricardo Wurmus 108eff6437 gnu: apache-arrow: Update to 23.0.1. 
* gnu/packages/databases.scm (apache-arrow): Update to 23.0.1.

Change-Id: Ia153df788eb9bcefcb7a189aa2c724407eafb75a
 2026-03-07 11:57:34 +01:00
Ricardo Wurmus 6d21b264f8 gnu: r-eyelinker: Update to 0.2.2. 
* gnu/packages/cran.scm (r-eyelinker): Update to 0.2.2.

Change-Id: Ieae9b5776bcf303d5c393b0f154efe293e7aae2d
 2026-03-07 11:57:33 +01:00
Ricardo Wurmus ccd6830df7 gnu: r-mlr3viz: Update to 0.11.0. 
* gnu/packages/cran.scm (r-mlr3viz): Update to 0.11.0.
[propagated-inputs]: Add r-mlr3.
[native-inputs]: Remove r-mlr3.

Change-Id: I4304718401de0646a41f5cd560a04fec219afdf3
 2026-03-07 11:57:33 +01:00
Ricardo Wurmus f8f491eedc gnu: r-seqminer: Update to 9.9. 
* gnu/packages/cran.scm (r-seqminer): Update to 9.9.

Change-Id: I92d9c951555a7ae0884af350ac44641d68d930e2
 2026-03-07 11:57:33 +01:00
Ricardo Wurmus ca6f3ce0ed gnu: r-survminer: Update to 0.5.2. 
* gnu/packages/cran.scm (r-survminer): Update to 0.5.2.
[propagated-inputs]: Remove r-survmisc.

Change-Id: I10c31376a5ff2d5b0b03ee3d400b23184c5a2b40
 2026-03-07 11:57:33 +01:00
Ricardo Wurmus 2a222b9a06 gnu: r-consrank: Update to 3.0. 
* gnu/packages/cran.scm (r-consrank): Update to 3.0.
[propagated-inputs]: Remove r-rgl; add r-rcpp.

Change-Id: I6825248c00b5028684473d6ab962a674872b1f3c
 2026-03-07 11:57:33 +01:00
Ricardo Wurmus 3a82f24dbb gnu: r-univoutl: Update to 0.5.0. 
* gnu/packages/cran.scm (r-univoutl): Update to 0.5.0.

Change-Id: I01bba56736a8798c07bb0323f02f8bb92006568d
 2026-03-07 11:57:33 +01:00
Ricardo Wurmus 8226504427 gnu: r-actcd: Update to 1.4-0. 
* gnu/packages/cran.scm (r-actcd): Update to 1.4-0.

Change-Id: Id203fb927afe757af0feca872567cb6e243b2d58
 2026-03-07 11:57:33 +01:00
Ricardo Wurmus af22ab5465 gnu: r-graphlayouts: Update to 1.2.3. 
* gnu/packages/cran.scm (r-graphlayouts): Update to 1.2.3.

Change-Id: I4885be10ff58981de480a01d895108f43302a734
 2026-03-07 11:57:33 +01:00
Ricardo Wurmus ee1e0456f8 gnu: r-xtable: Update to 1.8-8. 
* gnu/packages/cran.scm (r-xtable): Update to 1.8-8.
[native-inputs]: Add r-glue, r-survival, and r-zoo.

Change-Id: Id3e8dcf4a3af41055395be72cabb7ad80f4f54fc
 2026-03-07 11:57:33 +01:00
Ricardo Wurmus 48859d6578 gnu: r-arrow: Update to 23.0.1.1. 
* gnu/packages/cran.scm (r-arrow): Update to 23.0.1.1.

Change-Id: I608a23efb172116cda8fe10a6b6c39629509ffaf
 2026-03-07 11:57:33 +01:00
Ricardo Wurmus 3efb038254 gnu: r-sf: Update to 1.1-0. 
* gnu/packages/cran.scm (r-sf): Update to 1.1-0.

Change-Id: I0d7da335df2d49a51eb7321c19750d9d7100bfe7
 2026-03-07 11:57:33 +01:00
Ricardo Wurmus 859e2a6702 gnu: r-testit: Update to 0.16. 
* gnu/packages/cran.scm (r-testit): Update to 0.16.

Change-Id: I8e9bffefbaeed4d02a991b9917575f73abb740a1
 2026-03-07 11:57:32 +01:00
Ricardo Wurmus e1d942c302 gnu: r-tweedie: Update to 3.0.16. 
* gnu/packages/cran.scm (r-tweedie): Update to 3.0.16.

Change-Id: I02fa4c3dce69cb34f0af1deb0d1700b3cb27b3e4
 2026-03-07 11:57:32 +01:00
Ricardo Wurmus 9c1409c6cf gnu: r-survey: Update to 4.5. 
* gnu/packages/cran.scm (r-survey): Update to 4.5.
[native-inputs]: Add r-knitr and r-testthat.

Change-Id: I31082e639beb4dd872fdbacdfce4275df2264998
 2026-03-07 11:57:32 +01:00
Ricardo Wurmus 6410d6eedb gnu: r-ggpubr: Update to 0.6.3. 
* gnu/packages/cran.scm (r-ggpubr): Update to 0.6.3.

Change-Id: I2f780d22961b9c7f18411c99bef877cb34a0eea3
 2026-03-07 11:57:32 +01:00
Ricardo Wurmus 664cdfa867 gnu: r-later: Update to 1.4.7. 
* gnu/packages/cran.scm (r-later): Update to 1.4.7.

Change-Id: Iaf9ac4731054a9251ab23f8c8188f839a881180c
 2026-03-07 11:57:32 +01:00
Ricardo Wurmus fccc16a8ca gnu: r-simdesign: Update to 2.24. 
* gnu/packages/cran.scm (r-simdesign): Update to 2.24.

Change-Id: I997fe5ffaba1d67b0b84d649068d153b388c95b7
 2026-03-07 11:57:32 +01:00