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gnu: Add r-msdatahub.

* gnu/packages/bioconductor.scm (r-msdatahub): New variable.

Change-Id: I63977e3c950b122c014108683e84aefa51972064
This commit is contained in:
Laurent Gatto
2026-03-02 08:49:32 +01:00
committed by Andreas Enge
parent d2079b3643
commit eaab307c5c

View File

@@ -11868,6 +11868,35 @@ package thus provides an alternative MS data representation for very large or
remote MS data sets.")
(license license:artistic2.0)))
(define-public r-msdatahub
(package
(name "r-msdatahub")
(version "1.10.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MsDataHub" version))
(sha256
(base32 "09rfj583b1vz3p328pnlrzj7mxg6804ia1q84p9y5pvzcb0z17fv"))))
(properties `((upstream-name . "MsDataHub")))
(build-system r-build-system)
(arguments
(list
#:phases '(modify-phases %standard-phases
(add-after 'unpack 'set-HOME
(lambda _
(setenv "HOME" "/tmp"))))))
(propagated-inputs (list r-experimenthub))
(native-inputs (list r-knitr r-testthat))
(home-page "https://rformassspectrometry.github.io/MsDataHub")
(synopsis "Mass spectrometry data on ExperimentHub")
(description
"The @code{MsDataHub} package uses the @code{ExperimentHub}
infrastructure to distribute raw mass spectrometry data files, peptide
spectrum matches or quantitative data from proteomics and metabolomics
experiments.")
(license license:artistic2.0)))
(define-public r-msexperiment
(package
(name "r-msexperiment")