gnu: gpgmepp: Update to 2.1.0.

* gnu/packages/gnupg.scm (gpgmepp): Update to 2.1.0.

Change-Id: Ie733cff10648bd7e09cadc9dc1e5577ee19f99c8

doc/guix.texi

@@ -53,7 +53,7 @@ Copyright @copyright{} 2017, 2019--2026 Maxim Cournoyer@*
 Copyright @copyright{} 2017–2022 Tobias Geerinckx-Rice@*
 Copyright @copyright{} 2017 George Clemmer@*
 Copyright @copyright{} 2017 Andy Wingo@*
-Copyright @copyright{} 2017, 2018, 2019, 2020, 2023, 2024, 2025, 2026 Arun Isaac@*
+Copyright @copyright{} 2017, 2018, 2019, 2020, 2023, 2024, 2025 Arun Isaac@*
 Copyright @copyright{} 2017 nee@*
 Copyright @copyright{} 2018 Rutger Helling@*
 Copyright @copyright{} 2018, 2021, 2023, 2025, 2026 Oleg Pykhalov@*
@@ -124,7 +124,7 @@ Copyright @copyright{} 2023 Thomas Ieong@*
 Copyright @copyright{} 2023 Saku Laesvuori@*
 Copyright @copyright{} 2023 Graham James Addis@*
 Copyright @copyright{} 2023-2025 Tomas Volf@*
-Copyright @copyright{} 2024-2026 Herman Rimm@*
+Copyright @copyright{} 2024, 2025 Herman Rimm@*
 Copyright @copyright{} 2024 Matthew Trzcinski@*
 Copyright @copyright{} 2024 Richard Sent@*
 Copyright @copyright{} 2024 Dariqq@*
@@ -16710,12 +16710,6 @@ guix lint @var{options} @var{package}@dots{}
 @end example
 
 If no package is given on the command line, then all packages are checked.
-To check packages in particular source files, the syntax is:
-
-@example
-guix lint @var{options} --whole-file @var{file}@dots{}
-@end example
-
 The @var{options} may be zero or more of the following:
 
 @table @code
@@ -16753,23 +16747,9 @@ Only enable the checkers that do not depend on Internet access.
 Add @var{directory} to the front of the package module search path
 (@pxref{Package Modules}).
 
-@item --whole-file
-@itemx -f
-Check the top-level package definitions in the given files; subsequent
-arguments are treated as file names rather than package names.  This
-option also enables a special checker which checks if a package
-alphabetically succeeds the one above it.
+This allows users to define their own packages and make them visible to
+the command-line tools.
 
-For example, to check if the packages in @file{gnu/packages/matrix.scm}
-are sorted alphabetically, and if the package names therein follow
-established conventions, run:
-
-@example
-guix lint -c name -f gnu/packages/matrix.scm
-@end example
-
-The previous two options allow users to define their own packages and
-make them visible to the command-line tools.
 @end table
 
 @node Invoking guix size
@@ -36761,16 +36741,13 @@ The Mumi package to use.
 Data directory to store Debbugs data from upstream Debbugs instance.
 
 @item @code{rsync-remote}
-Remote rsync path from which to download Debbugs data.
+Remote rsync path from which to download Debbugs data.  The remote is
+polled every 5 minutes, unless a previous instance of rsync is already
+running.
 
 @item @code{rsync-flags} (default: @code{'()})
 Additional flags to pass to @command{rsync}.
 
-@item @code{rsync-and-index-event} (default: @code{#~(calendar-event #:minutes '#$(iota 12 0 5))})
-Shepherd calendar event to run the rsync and indexing timer at.  By
-default, this is once every 5 minutes.  The timer job is not run if an
-earlier instance of it is still running.
-
 @item @code{mailer?} (default: @code{#true})
 Whether to enable or disable the mailer component.
 

gnu/local.mk

@@ -1101,6 +1101,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/catdoc-CVE-2017-11110.patch		\
   %D%/packages/patches/chez-irregex-import-cond-expand.patch	\
   %D%/packages/patches/chez-scheme-bin-sh.patch			\
+  %D%/packages/patches/cianna-remove-error-for-missing-cuda.patch		\
   %D%/packages/patches/circos-remove-findbin.patch		\
   %D%/packages/patches/cdparanoia-fpic.patch			\
   %D%/packages/patches/cdrkit-libre-cross-compile.patch	\
@@ -1526,7 +1527,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/gnumach-version.patch			\
   %D%/packages/patches/gnupg-default-pinentry.patch		\
   %D%/packages/patches/gnupg-1-build-with-gcc10.patch		\
-  %D%/packages/patches/gnutls-no-which.patch			\
   %D%/packages/patches/gobject-introspection-absolute-shlib-path.patch \
   %D%/packages/patches/gobject-introspection-cc.patch		\
   %D%/packages/patches/gobject-introspection-girepository.patch	\
@@ -2022,6 +2022,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/ocaml-4.07-dynamically-allocate-signal-stack.patch	\
   %D%/packages/patches/ocaml-4.09-dynamically-allocate-signal-stack.patch	\
   %D%/packages/patches/ocaml-4.09-multiple-definitions.patch	\
+  %D%/packages/patches/ogs-6.5.7-netcdfconverter.patch \
   %D%/packages/patches/omake-fix-non-determinism.patch	\
   %D%/packages/patches/oneko-remove-nonfree-characters.patch	\
   %D%/packages/patches/onetbb-other-arches.patch	\
@@ -2115,7 +2116,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-clarabel-blas.patch		\
   %D%/packages/patches/python-daemon-relax-lockfile.patch	\
   %D%/packages/patches/python-docrepr-fix-tests.patch		\
-  %D%/packages/patches/python-gpg-setup-72.patch                \
   %D%/packages/patches/python-hdmedians-replace-nose.patch	\
   %D%/packages/patches/python-jinja2-fragments-modify-conftest-py.patch	\
   %D%/packages/patches/python-louvain-fix-test.patch		\
@@ -2626,7 +2626,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/x265-arm-flags.patch			\
   %D%/packages/patches/x265-4-arm-flags.patch			\
   %D%/packages/patches/xdg-desktop-portal-wlr-harcoded-length.patch\
-  %D%/packages/patches/xdmf-3.0.0-hdf5.patch \
   %D%/packages/patches/xf86-video-siliconmotion-fix-ftbfs.patch \
   %D%/packages/patches/xfig-Enable-error-message-for-missing-libraries.patch		\
   %D%/packages/patches/xfig-Fix-double-free-when-requesting-MediaBox.patch		\

gnu/packages/bioinformatics.scm

@@ -18002,7 +18002,7 @@ expression report comparing samples in an easily configurable manner.")
            fastqc
            bowtie
            idr
-           snakemake
+           snakemake-7
            samtools
            bedtools
            kentutils))
@@ -18020,87 +18020,80 @@ in an easily configurable manner.")
     (license license:gpl3+)))
 
 (define-public pigx-bsseq
-  (let ((commit "1b3a69bd5363fa882af4193215de7fb475bae066"))
-    (package
-      (name "pigx-bsseq")
-      (version (git-version "0.1.10" "0" commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                       (url "https://github.com/BIMSBbioinfo/pigx_bsseq/")
-                       (commit commit)
-                       (recursive? #true)))
-                (file-name (git-file-name name version))
-                (sha256
-                 (base32
-                  "0r0gjfycgh1hqba7ma03bwxlvr2kz68yzclx5iba3wrxxqmivil6"))))
-      (build-system gnu-build-system)
-      (arguments
-       (list
-        ;; TODO: tests currently require 12+GB of RAM.  See
-        ;; https://github.com/BIMSBbioinfo/pigx_bsseq/issues/164
-        #:tests? #f
-        #:phases
-        '(modify-phases %standard-phases
-           ;; This file is meant for development, but it interferes with
-           ;; Makefile.
-           (add-after 'unpack 'delete-GNUmakefile
-             (lambda _ (delete-file "GNUmakefile")))
-           (add-before 'configure 'set-PYTHONPATH
-             (lambda _
-               (setenv "PYTHONPATH" (getenv "GUIX_PYTHONPATH"))))
-           (add-before 'check 'set-timezone
-             ;; The readr package is picky about timezones.
-             (lambda* (#:key inputs #:allow-other-keys)
-               (setenv "TZ" "UTC+1")
-               (setenv "TZDIR"
-                       (search-input-directory inputs
-                                               "share/zoneinfo"))))
-           (add-before 'check 'pre-check
-             (lambda _
-               ;; Needed for tests
-               (setenv "HOME" "/tmp"))))))
-      (native-inputs
-       (list tzdata-for-tests autoconf automake))
-      (inputs
-       (list coreutils
-             sed
-             grep
-             r-minimal
-             r-annotationhub
-             r-dt
-             r-genomation
-             r-ggbio
-             r-ggrepel
-             r-matrixstats
-             r-methylkit
-             r-reshape2
-             r-rtracklayer
-             r-rmarkdown
-             r-bookdown
-             r-ggplot2
-             r-ggbio
-             pandoc
-             python-wrapper
-             python-pyyaml
-             snakemake
-             bismark
-             bowtie
-             bwa-meth
-             fastqc
-             methyldackel
-             multiqc
-             trim-galore
-             cutadapt
-             samblaster
-             samtools))
-      (home-page "https://bioinformatics.mdc-berlin.de/pigx/")
-      (synopsis "Bisulfite sequencing pipeline from fastq to methylation reports")
-      (description "PiGx BSseq is a data processing pipeline for raw fastq read
+  (package
+    (name "pigx-bsseq")
+    (version "0.1.10")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/BIMSBbioinfo/pigx_bsseq/"
+                                  "releases/download/v" version
+                                  "/pigx_bsseq-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1vy3mhbrfdnjbhikwg3mgkfnwnzk96a1n27cxrr7gsffpmz9q6wa"))))
+    (build-system gnu-build-system)
+    (arguments
+     (list
+      ;; TODO: tests currently require 12+GB of RAM.  See
+      ;; https://github.com/BIMSBbioinfo/pigx_bsseq/issues/164
+      #:tests? #f
+      #:phases
+      '(modify-phases %standard-phases
+         (add-before 'configure 'set-PYTHONPATH
+           (lambda _
+             (setenv "PYTHONPATH" (getenv "GUIX_PYTHONPATH"))))
+         (add-before 'check 'set-timezone
+           ;; The readr package is picky about timezones.
+           (lambda* (#:key inputs #:allow-other-keys)
+             (setenv "TZ" "UTC+1")
+             (setenv "TZDIR"
+                     (search-input-directory inputs
+                                             "share/zoneinfo"))))
+         (add-before 'check 'pre-check
+           (lambda _
+             ;; Needed for tests
+             (setenv "HOME" "/tmp"))))))
+    (native-inputs
+     (list tzdata-for-tests))
+    (inputs
+     (list coreutils
+           sed
+           grep
+           r-minimal
+           r-annotationhub
+           r-dt
+           r-genomation
+           r-ggbio
+           r-ggrepel
+           r-matrixstats
+           r-methylkit
+           r-reshape2
+           r-rtracklayer
+           r-rmarkdown
+           r-bookdown
+           r-ggplot2
+           r-ggbio
+           pandoc
+           python-wrapper
+           python-pyyaml
+           snakemake-7
+           bismark
+           bowtie
+           bwa-meth
+           fastqc
+           methyldackel
+           multiqc
+           trim-galore
+           cutadapt
+           samblaster
+           samtools))
+    (home-page "https://bioinformatics.mdc-berlin.de/pigx/")
+    (synopsis "Bisulfite sequencing pipeline from fastq to methylation reports")
+    (description "PiGx BSseq is a data processing pipeline for raw fastq read
 data of bisulfite experiments; it produces reports on aggregate methylation
 and coverage and can be used to produce information on differential
 methylation and segmentation.")
-      (license license:gpl3+))))
+    (license license:gpl3+)))
 
 (define-public pigx-scrnaseq
   (package
@@ -18273,7 +18266,7 @@ based methods.")
            r-tidyr
            r-viridis
            samtools
-           snakemake
+           snakemake-7
            wget))
     (home-page "https://bioinformatics.mdc-berlin.de/pigx/")
     (synopsis "Analysis pipeline for wastewater sequencing")

gnu/packages/clojure.scm

@@ -23,24 +23,19 @@
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 (define-module (gnu packages clojure)
+  #:use-module (gnu packages)
   #:use-module (gnu packages base)
-  #:use-module (gnu packages golang-build)
-  #:use-module (gnu packages golang-check)
-  #:use-module (gnu packages golang-xyz)
-  #:use-module (gnu packages golang)
   #:use-module (gnu packages guile)
   #:use-module (gnu packages java)
   #:use-module (gnu packages maven)
-  #:use-module (gnu packages)
-  #:use-module (guix build-system ant)
-  #:use-module (guix build-system clojure)
-  #:use-module (guix build-system copy)
-  #:use-module (guix build-system go)
-  #:use-module (guix download)
   #:use-module (guix gexp)
-  #:use-module (guix git-download)
   #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix packages))
+  #:use-module (guix packages)
+  #:use-module (guix download)
+  #:use-module (guix git-download)
+  #:use-module (guix build-system ant)
+  #:use-module (guix build-system copy)
+  #:use-module (guix build-system clojure))
 
 (define-public clojure-spec-alpha
   (package
@@ -1258,44 +1253,3 @@ an operation on the service. invoke takes a map and returns a map, and works
 the same way for every operation on every service.")
     (home-page "https://github.com/cognitect-labs/aws-api")
     (license license:asl2.0)))
-
-(define-public let-go
-  (package
-    (name "let-go")
-    (version "1.7.4")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/nooga/let-go")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "139a129fw3w9a4bcfgms60ll90vy2vmqinbmjn44zmgx4fr2adif"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:go go-1.26
-      #:install-source? #f
-      #:import-path "github.com/nooga/let-go"))
-    (native-inputs
-     (list go-github-com-davecgh-go-spew
-           go-github-com-alimpfard-line
-           go-github-com-hashicorp-go-uuid
-           go-github-com-kr-pretty
-           go-github-com-pmezard-go-difflib
-           go-github-com-stretchr-testify
-           go-github-com-zeebo-bencode
-           go-golang-org-x-sys
-           go-gopkg-in-check-v1
-           go-gopkg-in-yaml-v3))
-    (home-page "https://nooga.github.io/let-go")
-    (synopsis "Clojure dialect written in Go")
-    (description
-     "let-go is a Clojure dialect with a bytecode compiler and a stack virtual
-machine, written in the Go programming language.
-
-It is not a drop-in replacement for Clojure JVM.  It does not load JARs and
-does not aim to.  Most idiomatic Clojure code runs unmodified, but a real
-project with library dependencies will need adjustments.")
-    (license license:expat)))

gnu/packages/compression.scm

@@ -34,7 +34,7 @@
 ;;; Copyright © 2021 Vincent Legoll <vincent.legoll@gmail.com>
 ;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
 ;;; Copyright © 2021, 2024-2025 Maxim Cournoyer <maxim@guixotic.coop>
-;;; Copyright © 2021 Ahmad Jarara <git@ajarara.io>
+;;; Copyright © 2021, 2026 Ahmad Jarara <ajarara@fastmail.com>
 ;;; Copyright © 2022 Greg Hogan <code@greghogan.com>
 ;;; Copyright © 2022 Zhu Zihao <all_but_last@163.com>
 ;;; Copyright © 2021 Foo Chuan Wei <chuanwei.foo@hotmail.com>
@@ -3005,17 +3005,13 @@ can append files to the end of such compressed archives.")
           "00ibddiy62kbs9wl52c35j0hbqanx6pi7lvzkpzmbsizkj8mhp1p"))))
     (build-system cmake-build-system)
     (arguments
-     '(#:tests? #f
-       #:configure-flags
-       (let* ((out (assoc-ref %outputs "out"))
-              (lib (string-append out "/lib")))
-         (list
-          "-DCMAKE_BUILD_TYPE=Release"
-          "-DBUILD_SHARED_LIBS=ON"
-          "-DCBOR_CUSTOM_ALLOC=ON"
-          (string-append "-DCMAKE_INSTALL_LIBDIR=" lib)
-          (string-append "-DCMAKE_INSTALL_RPATH=" lib)))))
+     (list
+      #:configure-flags
+      #~'("-DWITH_TESTS=ON"
+          "-DBUILD_SHARED_LIBS=ON")))
     (synopsis "The C library for parsing and generating CBOR")
+    (native-inputs
+     (list cmocka))
     (description
      "@acronym{CBOR, The Concise Binary Object Representation} is a data format
 whose design goals include the possibility of extremely small code size, fairly

gnu/packages/crypto.scm

@@ -1009,7 +1009,7 @@ SHA-1, SHA-2, and SHA-3, yet is at least as secure as SHA-3.")
 (define-public rhash
   (package
     (name "rhash")
-    (version "1.4.3")
+    (version "1.4.6")
     (source
      (origin
        (method url-fetch)
@@ -1018,7 +1018,7 @@ SHA-1, SHA-2, and SHA-3, yet is at least as secure as SHA-3.")
        (file-name (string-append "rhash-" version ".tar.gz"))
        (sha256
         (base32
-         "0glaghjvwh9ziiqf599v0fdr6jrgc7lcnriq0h7r41k3jrkglh0y"))))
+         "0ylkxhkj4nzmb0iampn2lv7v4yw59x7dl8mdcxqcx2mfxv7ijq4z"))))
     (build-system gnu-build-system)
     (arguments
      (list #:configure-flags

gnu/packages/geo.scm

@@ -807,7 +807,7 @@ OpenGeoSys")
 (define-public ogs-serial
   (package
     (name "ogs-serial")
-    (version "6.5.8")
+    (version "6.5.7")
     (source
      (origin
        (method git-fetch)
@@ -816,7 +816,9 @@ OpenGeoSys")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "037il6jw2j1g7bvrwvbp20yf0cnz7c7f3wmszxfv5ay7l54sffqg"))))
+        (base32 "1wflgkbcsa4sr8g63img0ld6h4jm1b7hjzsa2m4gsbzc6j7kd41w"))
+       ;; Remove patch on next release, likely 6.5.8
+       (patches (search-patches "ogs-6.5.7-netcdfconverter.patch"))))
     (build-system cmake-build-system)
     (arguments
      (list
@@ -871,7 +873,6 @@ OpenGeoSys")
            tclap
            tfel
            vtk
-           xdmf
            xmlpatch
            zlib))
     (propagated-inputs
@@ -1248,32 +1249,21 @@ readily with other Python GIS packages such as pyproj, Rtree, and Shapely.")
 (define-public python-geopack
   (package
     (name "python-geopack")
-    ;; See: <https://github.com/tsssss/geopack/issues/26>.
-    (properties '((commit . "8c5f0e0f6752604c5a6f57bac752059e0f85edbb")
-                  (revision . "0")))
-    (version (git-version "1.0.13"
-                          (assoc-ref properties 'revision)
-                          (assoc-ref properties 'commit)))
+    (version "1.0.12")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
               (url "https://github.com/tsssss/geopack")
-              (commit (assoc-ref properties 'commit))))
+              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0ywqg9j09mhpfb9dcjmnlvh26s0v4lvzfwdmlivgx9ypamafa117"))))
+        (base32 "0ap5j4359xxjkbz06y097yq5d37sxcwlnlsfwrv6dvza7ydmgcgg"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       ;; XXX Reported upstream <https://github.com/tsssss/geopack/issues/21>.
-      #:tests? #f
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'set-version
-            (lambda _
-              (substitute* "setup.py"
-                (("1.0.12") "1.0.13")))))))
+      #:tests? #f))
     (native-inputs
      (list python-setuptools))
     (propagated-inputs

gnu/packages/gnupg.scm

@@ -27,6 +27,7 @@
 ;;; Copyright © 2025 Antoine Côté <antoine.cote@posteo.net>
 ;;; Copyright © 2026 Luis Guilherme Coelho <lgcoelho@disroot.org>
 ;;; Copyright © 2026 Daniel Littlewood <dan@danielittlewood.xyz>
+;;; Copyright © 2026 Cayetano Santos <csantosb@inventati.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -82,6 +83,7 @@
   #:use-module (gnu packages xml)
   #:use-module (gnu packages xorg)
   #:use-module (gnu packages)
+  #:use-module (guix build-system cmake)
   #:use-module (guix build-system copy)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system meson)
@@ -237,7 +239,7 @@ generation.")
 (define-public libassuan
   (package
     (name "libassuan")
-    (version "3.0.1")
+    (version "3.0.2")
     (source
      (origin
       (method url-fetch)
@@ -245,7 +247,7 @@ generation.")
                           version ".tar.bz2"))
       (sha256
        (base32
-        "1ccly6aqyxv3hgshhls6qw177salcrawp0x4lsqs9ph3c4pg9w68"))))
+        "1xin9h3vhx94j5w9p7xi3csmw1a6yfif2w4r1x8k7rk6sbd1r4yj"))))
     (build-system gnu-build-system)
     (arguments (if (%current-target-system)
                    (list #:configure-flags
@@ -267,7 +269,7 @@ provided.")
 (define-public libksba
   (package
     (name "libksba")
-    (version "1.6.7")
+    (version "1.8.0")
     (source
      (origin
       (method url-fetch)
@@ -276,7 +278,7 @@ provided.")
             version ".tar.bz2"))
       (sha256
        (base32
-        "0qxpmadxggx5808326i9g4ya0xrnv14mfxpg7rlvckmviq5m2wng"))))
+        "14lj3ld4nxf916kq01z0203x36nhgymxf0j222mg4jap16wrssr9"))))
     (build-system gnu-build-system)
     (propagated-inputs
      (list libgpg-error))
@@ -434,16 +436,16 @@ libskba (working with X.509 certificates and CMS data).")
                (substitute* "checks/Makefile.in"
                  (("/bin/sh") (which "sh"))))))))))
 
-(define-public gpgme
+(define-public gpgme-2
   (package
     (name "gpgme")
-    (version "1.24.1")
+    (version "2.1.0")
     (source
      (origin
       (method url-fetch)
       (uri (string-append "mirror://gnupg/gpgme/gpgme-" version ".tar.bz2"))
       (sha256
-       (base32 "0px87fbp90xp8vf1wms02flk14zmrqsfr135f5his1kiiqjx01ga"))))
+       (base32 "0azrddb51c423il7xdqcrahvi8fyhblvvs7hzgs5jqn27yjmw744"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -455,7 +457,7 @@ libskba (working with X.509 certificates and CMS data).")
     (propagated-inputs
      ;; As required by the pkg-config's Requires.private.
      (list libgpg-error libassuan))
-    (home-page "https://www.gnupg.org/related_software/gpgme/")
+    (home-page "https://gnupg.org/software/gpgme/index.html")
     (synopsis "Library providing simplified access to GnuPG functionality")
     (description
      "GnuPG Made Easy (GPGME) is a library designed to make access to GnuPG
@@ -469,57 +471,107 @@ instead.  This way bug fixes or improvements can be done at a central place
 and every application benefits from this.")
     (license license:lgpl2.1+)))
 
+(define-public gpgme-1
+  (package
+    (inherit gpgme-2)
+    (version "1.24.1")
+    (source
+     (origin
+      (method url-fetch)
+      (uri (string-append "mirror://gnupg/gpgme/gpgme-" version ".tar.bz2"))
+      (sha256
+       (base32 "0px87fbp90xp8vf1wms02flk14zmrqsfr135f5his1kiiqjx01ga"))))))
+
+(define-public gpgme gpgme-1)
+
+(define-public gpgmepp
+  (package
+    (name "gpgmepp")
+    (version "2.1.0")
+    (source
+     (origin
+      (method url-fetch)
+      (uri (string-append "mirror://gnupg/gpgmepp/gpgmepp-" version ".tar.xz"))
+      (sha256
+       (base32 "1qhn583cbi67694m3bg77ckb892in2f16src2x5m0102ix309y2p"))))
+    (build-system cmake-build-system)
+    (arguments
+     (list
+      ;; FIXME: BUILD_TESTING variable is enabled by deault, but still no tests
+      ;; are found.
+      #:tests? #f))
+    (propagated-inputs
+     ;; As required by the pkg-config's Requires.private.
+     (list gpgme-2 libgpg-error))
+    (home-page "https://gnupg.org/software/gpgme/index.html")
+    (synopsis "C++ bindings/wrapper for GPGME")
+    (description
+     "GPGME++ is a C++ wrapper (or C++ bindings) for the GnuPG project's
+@acronym{GPGME, GnuPG Made Easy} library.")
+    (license license:lgpl2.1+)))
+
 (define-public qgpgme-qt5
   (package
-    (inherit gpgme)
     (name "qgpgme-qt5")
+    (version "2.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "mirror://gnupg/qgpgme/qgpgme-" version ".tar.xz"))
+       (sha256
+        (base32 "1bb198dk49bd7yx4cf4w07acjhllilx1nczdna7139ncflj5nr0m"))))
+    (build-system qt-build-system)
     (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (add-before 'build 'chdir-and-symlink
-           (lambda* (#:key inputs #:allow-other-keys)
-             (let ((gpgme (assoc-ref inputs "gpgme")))
-               (symlink (string-append gpgme "/lib/libgpgmepp.la")
-                        "lang/cpp/src/libgpgmepp.la")
-               (symlink (string-append gpgme "/lib/libgpgme.la")
-                        "src/libgpgme.la"))
-             (chdir "lang/qt"))))))
-    (propagated-inputs (list gpgme))    ;required by QGpgmeConfig.cmake
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'check-setup
+            (lambda _
+              (setenv "HOME" (getcwd))
+              (invoke "gpg-agent" "--daemon"))))))
+    (propagated-inputs
+     (list gpgme-2        ;for FindGpgme.cmake and QGpgmeQt6Config.cmake
+           gpgmepp        ;for QGpgmeQt6Config.cmake
+           libgpg-error)) ;for FindLibGpgError.cmake and QGpgmeQt6Config.cmake
     (native-inputs
-     (modify-inputs native-inputs
-       (prepend pkg-config)))
-    (inputs
-     (modify-inputs inputs
-       (prepend qtbase-5)))
+     (list gnupg        ;for tests
+           pkg-config))
+    (home-page "https://gnupg.org/software/gpgme/index.html")
     (synopsis "Qt API bindings for gpgme")
     (description "QGpgme provides a very high level Qt API around GpgMEpp.
 
 QGpgME was originally developed as part of libkleo and incorporated into
 gpgpme starting with version 1.7.")
-    (license license:gpl2+))) ;; Note: this differs from gpgme
+    (license license:gpl2+)))
 
 (define-public qgpgme
   (package
-    (inherit gpgme)
     (name "qgpgme")
+    (version "2.1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "mirror://gnupg/qgpgme/qgpgme-" version ".tar.xz"))
+       (sha256
+        (base32 "024gdw8i5ibmq0bjjf6znhxw93chh1j21dr25m0gk9z4xsrzwcjv"))))
+    (build-system qt-build-system)
     (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (add-before 'build 'chdir-and-symlink
-           (lambda* (#:key inputs #:allow-other-keys)
-             (let ((gpgme (assoc-ref inputs "gpgme")))
-               (symlink (string-append gpgme "/lib/libgpgmepp.la")
-                        "lang/cpp/src/libgpgmepp.la")
-               (symlink (string-append gpgme "/lib/libgpgme.la")
-                        "src/libgpgme.la"))
-             (chdir "lang/qt"))))))
-    (propagated-inputs (list gpgme))    ;required by QGpgmeConfig.cmake
+     (list
+      #:qtbase qtbase
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'check-setup
+            (lambda _
+              (setenv "HOME" (getcwd))
+              (invoke "gpg-agent" "--daemon"))))))
+    (propagated-inputs
+     (list gpgme-2        ;for FindGpgme.cmake and QGpgmeQt6Config.cmake
+           gpgmepp        ;for QGpgmeQt6Config.cmake
+           libgpg-error)) ;for FindLibGpgError.cmake and QGpgmeQt6Config.cmake
     (native-inputs
-     (modify-inputs native-inputs
-       (prepend pkg-config)))
-    (inputs
-     (modify-inputs inputs
-       (prepend qtbase)))
+     (list gnupg        ;for tests
+           pkg-config))
+    (home-page "https://gnupg.org/software/gpgme/index.html")
     (synopsis "Qt API bindings for gpgme")
     (description "QGpgme provides a very high level Qt API around GpgMEpp.")
     (license license:gpl2+)))
@@ -583,21 +635,20 @@ interface (FFI) of Guile.")
 (define-public python-gpg
   (package
     (name "python-gpg")
-    (version "1.10.0")
+    (version "2.0.0")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "gpg" version))
-              (patches (search-patches "python-gpg-setup-72.patch"))
               (sha256
                (base32
-                "1ji3ynhp36m1ccx7bmaq75dhij9frpn19v9mpi4aajn8csl194il"))))
+                "0f2l0iyc8gp49i604c5wpliaa1dsyj0i0p9xc9zfj4z7fwaavdsf"))))
     (build-system pyproject-build-system)
     (arguments
      (list
       #:tests? #f ; No test suite.
       #:phases
       #~(modify-phases %standard-phases
-          (add-before 'build 'set-environment
+          (add-before 'build 'patch-setup.py
             (lambda _
               ;; GPGME is built with large file support, so we need to set
               ;; _FILE_OFFSET_BITS to 64 in all users of the GPGME library.
@@ -607,9 +658,16 @@ interface (FFI) of Guile.")
                            "extra_macros = { \"_FILE_OFFSET_BITS\": 64 }")))
                      #~())
               (substitute* "setup.py"
-                (("cc") (which "gcc"))))))))
+                (("cc") (which "gcc"))
+                (("\\/usr\\/lib\\/x86_64-linux-gnu( -lgpg-error)" _ keep)
+                 (string-append #$(this-package-input "libgpg-error") "/lib"
+                                keep))
+                (("\\/usr\\/lib\\/x86_64-linux-gnu( -lgpgme)" _ keep)
+                 (string-append #$(this-package-input "gpgme") "/lib" keep))
+                (("\\/usr\\/local(', 'include', 'gpgme\\.h')" _ keep)
+                 (string-append #$(this-package-input "gpgme") keep))))))))
     (inputs
-     (list gpgme))
+     (list gpgme-2 libgpg-error))
     (native-inputs
      (list swig-4.0 python-setuptools))
     (home-page (package-home-page gpgme))

gnu/packages/golang-crypto.scm

@@ -4293,7 +4293,7 @@ purpose of improving obfs4proxy's meek_lite transport.")
 (define-public go-go-mau-fi-libsignal
   (package
     (name "go-go-mau-fi-libsignal")
-    (version "0.2.1")
+    (version "0.1.2")
     (source
      (origin
        (method git-fetch)
@@ -4309,7 +4309,7 @@ purpose of improving obfs4proxy's meek_lite transport.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0jwqhaaqjf5fb322karppisbg5s1la459a0cwvhbii899nzyd59k"))))
+        (base32 "1pd2kijza7dr5nbgfw176ca1r3rmgpx8h22gqjp557awxqhw9lzr"))))
     (build-system go-build-system)
     (arguments
      (list

gnu/packages/golang-graphics.scm

@@ -1,6 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2026 Sughosha <sughosha@disroot.org>
-;;; Copyright © 2026 orahcio <orahcio@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -250,88 +249,3 @@ multiple return values, Go's native multiple return values are used instead.
 Whenever a native GTK call could return an unexpected NULL pointer, an
 additional error is returned in the Go binding.")
     (license license:isc)))
-
-(define-public go-github-com-jackmordaunt-icns-v3
-  (package
-    (name "go-github-com-jackmordaunt-icns-v3")
-    (version "3.0.1")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/JackMordaunt/icns")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "04wnxv79b1xbca16kgz98zc929q60lwcgcc6q784lkz2a1clh2z2"))
-       (modules '((guix build utils)))
-       (snippet
-        #~(begin
-            ;; Submodules with their own go.mod files and packaged separately:
-            (delete-file-recursively "cmd")))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:import-path "github.com/jackmordaunt/icns/v3"
-      #:test-flags #~(list "-vet=off")))
-    (propagated-inputs
-     (list go-github-com-nfnt-resize))
-    (home-page "https://github.com/jackmordaunt/icns")
-    (synopsis "Easily create .icns files")
-    (description
-     "This package provides Go library to easily convert @code{.jpg} and
-@code{.png} to @code{.icns}, or to convert from any @code{image.Image} to
-@code{.icns}.")
-    (license license:expat)))
-
-(define-public go-github-com-sergeymakinen-go-bmp
-  (package
-    (name "go-github-com-sergeymakinen-go-bmp")
-    (version "1.0.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/sergeymakinen/go-bmp")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0bglvxqmjvgclcfjpkznxyifj5r0bh837c2iw6x1vylc7lqcq07h"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:import-path "github.com/sergeymakinen/go-bmp"))
-    (home-page "https://github.com/sergeymakinen/go-bmp")
-    (synopsis "BMP image decoder and encoder")
-    (description "Package bmp implements a BMP image decoder and encoder.")
-    (license license:bsd-3)))
-
-(define-public go-github-com-sergeymakinen-go-ico
-  (package
-    (name "go-github-com-sergeymakinen-go-ico")
-    (version "1.0.0-beta.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/sergeymakinen/go-ico")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "115fgnhn1j91zvkigl1x03jkc2dn6vx7qvfmm6l59d24qkfv6cwn"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:import-path "github.com/sergeymakinen/go-ico"))
-    (propagated-inputs
-     (list go-github-com-sergeymakinen-go-bmp))
-    (home-page "https://github.com/sergeymakinen/go-ico")
-    (synopsis "ICO and CUR file decoders and encoders")
-    (description "Package ico implements an ICO file decoder and encoder.")
-    (license license:bsd-3)))
-
-;;;
-;;; Avoid adding new packages to the end of this file. To reduce the chances
-;;; of a merge conflict, place them above in alphabetic order:
-;;; guix import --insert=gnu/packages/golang-graphics.scm pypi <package-name>.
-;;;

gnu/packages/golang-web.scm

@@ -3724,51 +3724,6 @@ lookups.  It implements looking up the following records:
 Storage}.")
     (license license:asl2.0)))
 
-(define-public go-github-com-beeper-argo-go
-  (package
-    (name "go-github-com-beeper-argo-go")
-    (version "1.1.2")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/beeper/argo-go")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1c11aqbap9yxpnc8bvzjiy5cg53brhc47hw2q24xjvbw5d90r2ff"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:import-path "github.com/beeper/argo-go"
-      #:embed-files #~(list "prelude.graphql")
-      #:test-flags
-      #~(list "-vet=off"
-              "-skip" (string-join
-                       ;; These test groups fail with panic by similar error:
-                       ;; UnsignedDecode failed for 10000000000000000000000:
-                       ;; varint: varint too large for 64-bit. Encoded:
-                       ;; 80808092abb7b2f099bc08.
-                       (list "TestUnsignedRoundTrip"
-                             "TestQueriesEquivalence"
-                             "TestStarWarsEquivalence"
-                             "TestZigZagRoundTrip"
-                             ;; UnsignedDecode error mismatch for too long
-                             ;; varint.
-                             "TestUnsignedDecodeTooLong")
-                       "|"))))
-    (native-inputs
-     (list go-github-com-stretchr-testify))
-    (propagated-inputs
-     (list go-github-com-elliotchance-orderedmap-v3
-           go-github-com-vektah-gqlparser-v2))
-    (home-page "https://github.com/beeper/argo-go")
-    (synopsis "Go implementation of Argo for GraphQL")
-    (description
-     "Go implementation of Argo, a compact and compressible binary
-serialization format for GraphQL.")
-    (license license:expat)))
-
 (define-public go-github-com-beevik-ntp
   (package
     (name "go-github-com-beevik-ntp")
@@ -20917,30 +20872,28 @@ state machine.  See @url{https://raft.github.io/raft.pdf} for more info.")
 (define-public go-go-mau-fi-whatsmeow
   (package
     (name "go-go-mau-fi-whatsmeow")
-    (version "0.0.0-20260529101937-a7ea56383ec4")
+    (version "0.0.0-20241215104421-68b0856cce22")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
-              (url "https://github.com/tulir/whatsmeow")
-              (commit (go-version->git-ref version))))
+             (url "https://github.com/tulir/whatsmeow")
+             (commit (go-version->git-ref version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0i6vcn6l5sf0wsyr3k856xiz5pq3ivl9a7xd1bzqzlq74jmivivc"))))
+        (base32 "1y3h132g3w6ihc8jn587wvyha9xm3sinjlr0znqq7krvynz3z8id"))))
     (build-system go-build-system)
     (arguments
      (list
       #:import-path "go.mau.fi/whatsmeow"))
     (propagated-inputs
-     (list go-github-com-beeper-argo-go
-           go-github-com-coder-websocket
-           go-github-com-google-uuid
+     (list go-github-com-google-uuid
+           go-github-com-gorilla-websocket
            go-github-com-rs-zerolog
            go-go-mau-fi-libsignal
            go-go-mau-fi-util
            go-golang-org-x-crypto
            go-golang-org-x-net
-           go-golang-org-x-sync
            go-google-golang-org-protobuf))
     (home-page "https://go.mau.fi/whatsmeow")
     (synopsis "Go library for the WhatsApp web multidevice API")
@@ -23390,16 +23343,16 @@ the code or routes.")
 (define-public go-maunium-net-go-mautrix
   (package
     (name "go-maunium-net-go-mautrix")
-    (version "0.28.0")
+    (version "0.22.1")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
-              (url "https://github.com/mautrix/go")
-              (commit (string-append "v" version))))
+             (url "https://github.com/mautrix/go")
+             (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "09isb4q876mkcwm2yk7vgzwhd3yw1n0s78qvdb7wpmab6vvxjnlf"))))
+        (base32 "0msqbs3qc9ljckj41hgvp16p0sbfzm25wzldb68av9svimscwnmm"))))
     (build-system go-build-system)
     (arguments
      (list
@@ -23415,32 +23368,27 @@ the code or routes.")
          ;; golang.org/x/net/publicsuffix/table.go:33:12: pattern data/text:
          ;; cannot embed irregular file data/text
          "text")
-      #:test-flags
-      #~(list "-skip" (string-join
-                       ;; Network access is required for the tets.
-                       (list "TestCrossSignVerification_ScanQRAndConfirmScan"
-                             "TestSelfVerification_Accept_QRContents"
-                             "TestSelfVerification_ScanQRAndConfirmScan"
-                             "TestSelfVerification_ScanQRTransactionIDCorrup"
-                             "TestSelfVerification_ScanQRKeyCorrupted"
-                             "TestVerification_SAS"
-                             "TestVerification_SAS_BothCallStart"
-                             "TestVerification_Start"
-                             "TestVerification_StartThenCancel"
-                             "TestVerification_Accept_NoSupportedMethods"
-                             "TestVerification_Accept_CorrectMethodsPresented"
-                             "TestVerification_Accept_CancelOnNonParticipati"
-                             "TestVerification_ErrorOnDoubleAccept"
-                             "TestVerification_CancelOnDoubleStart"
-                             "TestClient_Version"
-                             "TestResolveServerName"
-                             "TestServerKeyResponse_VerifySelfSignature"
-                             "TestServerKeyResponse_FailWithFilter")
-                       "|"))))
+    #:test-flags
+    #~(list "-skip" (string-join
+                     ;; Network access is required for the tets.
+                     (list "TestClient_Version"
+                           "TestResolveServerName/RM_Step_3B"
+                           "TestResolveServerName/RM_Step_3C"
+                           "TestResolveServerName/RM_Step_3C_MSC4040"
+                           "TestResolveServerName/RM_Step_3D"
+                           "TestResolveServerName/RM_Step_4"
+                           "TestResolveServerName/RM_Step_4_MSC4040"
+                           "TestResolveServerName/maunium")
+                     "|")
+            "-vet=off")))
+    ;; XXX: The final application needs a "libolm" package.
+    (native-inputs
+     (list olm))
     (propagated-inputs
      (list go-filippo-io-edwards25519
            go-github-com-chzyer-readline
-           go-github-com-coder-websocket
+           go-github-com-gorilla-mux
+           go-github-com-gorilla-websocket
            go-github-com-lib-pq
            go-github-com-mattn-go-sqlite3
            go-github-com-rs-xid
@@ -23457,9 +23405,7 @@ the code or routes.")
            go-golang-org-x-net
            go-golang-org-x-sync
            go-gopkg-in-yaml-v3
-           go-maunium-net-go-mauflag
-           ;; XXX: The final application needs a "libolm" package.
-           olm))
+           go-maunium-net-go-mauflag))
     (home-page "https://maunium.net/go/mautrix")
     (synopsis "Golang Matrix framework")
     (description

gnu/packages/golang-xyz.scm

@@ -78,7 +78,6 @@
 ;;; Copyright © 2026 Vinicius Monego <monego@posteo.net>
 ;;; Copyright © 2026 Daniel Littlewood <dan@danielittlewood.xyz>
 ;;; Copyright © 2026 Sughosha <sughosha@disroot.org>
-;;; Copyright © 2026 orahcio <orahcio@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -114,7 +113,6 @@
   #:use-module (gnu packages golang-check)
   #:use-module (gnu packages golang-compression)
   #:use-module (gnu packages golang-crypto)
-  #:use-module (gnu packages golang-graphics)
   #:use-module (gnu packages golang-maths)
   #:use-module (gnu packages golang-vcs)
   #:use-module (gnu packages golang-web)
@@ -445,33 +443,6 @@ a human-readable byte format.")
 time dependencies in tests.")
     (license license:asl2.0)))
 
-(define-public go-code-rocketnine-space-tslocum-cbind
-  (package
-    (name "go-code-rocketnine-space-tslocum-cbind")
-    (version "0.1.5")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://codeberg.org/tslocum/cbind.git")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0a0gpzapm3jsivdf5h6lvlxhzngrmyj7xp5fdk20l8r4yba7yqsy"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:import-path "code.rocketnine.space/tslocum/cbind"
-      #:test-flags #~(list "--skip" "TestConfiguration")))
-    (propagated-inputs
-     (list go-github-com-gdamore-tcell-v2))
-    (home-page "https://codeberg.org/tslocum/cbind")
-    (synopsis "Key event handling library for tcell")
-    (description
-     "Package cbind provides a tcell key event encoding, decoding and handling
-as human-readable strings.")
-    (license license:expat)))
-
 (define-public go-codeberg-org-anaseto-gruid
   (package
     (name "go-codeberg-org-anaseto-gruid")
@@ -1869,33 +1840,6 @@ software (based on Python's
 @uref{https://github.com/pycontribs/tendo, tendo}).")
     (license license:expat)))
 
-(define-public go-github-com-alimpfard-line
-  (package
-    (name "go-github-com-alimpfard-line")
-    (version "0.0.0-20230131232016-03b4e7dee324")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/alimpfard/line")
-              (commit (go-version->git-ref version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0swjy1z7hqy4xgq2hfa457rs7p9d7fw5lmdh0zaf3n25rqv10ds1"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:import-path "github.com/alimpfard/line"))
-    (propagated-inputs
-     (list go-golang-org-x-sys))
-    (home-page "https://github.com/alimpfard/line")
-    (synopsis "Terminal line editor")
-    (description
-     "This package provides a full reimplementation of SerenityOS's LibLine in
-Go language.  It supports flexible autocompletion, live prompt, buffer update
-and stylisation, multiline editing and more.")
-    (license license:bsd-2)))
-
 (define-public go-github-com-alsm-ioprogress
   (package
     (name "go-github-com-alsm-ioprogress")
@@ -9826,37 +9770,6 @@ O(1) for @code{Set}, @code{Get}, @code{Delete} and @code{Len}.")
         #~(modify-phases %standard-phases
             (delete 'remove-submodule)))))))
 
-(define-public go-github-com-elliotchance-orderedmap-v3
-  (package
-    (name "go-github-com-elliotchance-orderedmap-v3")
-    (version "3.1.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/elliotchance/orderedmap")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1w681qsybcf34g0wn9hm6nnzc9jcdv59ahjiqdq9hs22xq0qgnjj"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      ;; Projects includes v1, v2 and v3 in the same source tree.
-      #:import-path "github.com/elliotchance/orderedmap/v3"
-      #:unpack-path "github.com/elliotchance/orderedmap"))
-    (native-inputs
-     (list go-github-com-stretchr-testify))
-    (home-page "https://github.com/elliotchance/orderedmap")
-    (synopsis "Ordered map in with amortized O(1) for Set, Get, Delete and Len")
-    (description
-     "An @code{*OrderedMap} is a high performance ordered map that maintains
-amortized O(1) for @code{Set}, @code{Get}, @code{Delete} and @code{Len}.
-Internally an @code{*OrderedMap} uses the composite type
-@url{https://go.dev/blog/maps, map} combined with a trimmed down linked list
-to maintain the order.")
-    (license license:expat)))
-
 (define-public go-github-com-elliotwutingfeng-asciiset
   (package
     (name "go-github-com-elliotwutingfeng-asciiset")
@@ -10189,36 +10102,6 @@ and @code{io.ReadCloser}) with overwrites
                     "  This package is a fork of dlclark/regexp2 providing a
 more similar API to regexp."))))
 
-(define-public go-github-com-esiqveland-notify
-  (package
-    (name "go-github-com-esiqveland-notify")
-    (version "0.13.3")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/esiqveland/notify")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "03d27a8rl55j6dqclg3233dj3j7v0i0p9cda06f9c4a21djamrfb"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:import-path "github.com/esiqveland/notify"))
-    (native-inputs
-     (list go-github-com-stretchr-testify))
-    (propagated-inputs
-     (list go-github-com-godbus-dbus-v5))
-    (home-page "https://github.com/esiqveland/notify")
-    (synopsis "Delivering desktop notifications over DBus")
-    (description
-     "Notify is a Go library for interacting with the DBus notification
-service defined by freedesktop.org at
-@url{https://developer.gnome.org/notification-spec/}.  Notify can deliver
-desktop notifications over DBus, ala how @code{libnotify} does it.")
-    (license license:bsd-3)))
-
 (define-public go-github-com-ettle-strcase
   (package
     (name "go-github-com-ettle-strcase")
@@ -11010,37 +10893,6 @@ library in go standard library.")
      "Go library that pluralizes and singularizes English nouns.")
     (license license:bsd-2)))
 
-(define-public go-github-com-gen2brain-beeep
-  (package
-    (name "go-github-com-gen2brain-beeep")
-    (version "0.11.2")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/gen2brain/beeep")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0jvfspz941r93djf83gsjqw8w9v34fa9dys1465iwbq769ayizmw"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:import-path "github.com/gen2brain/beeep"
-      #:test-flags #~(list "--skip" "TestAlert|TestNotify")))
-    (propagated-inputs
-     (list go-github-com-esiqveland-notify
-           go-github-com-godbus-dbus-v5
-           go-github-com-jackmordaunt-icns-v3
-           go-github-com-sergeymakinen-go-ico
-           go-golang-org-x-sys))
-    (home-page "https://github.com/gen2brain/beeep")
-    (synopsis "Sending desktop notifications, alerts and beeps")
-    (description
-     "Package beeep provides a cross-platform library for sending desktop
-notifications and beeps.")
-    (license license:bsd-2)))
-
 (define-public go-github-com-ghemawat-stream
   (package
     (name "go-github-com-ghemawat-stream")
@@ -29913,31 +29765,6 @@ utilities for cty Golang module.")
      "Package yaml can marshal and unmarshal cty values in YAML format.")
     (license license:asl2.0)))
 
-(define-public go-github-com-zeebo-bencode
-  (package
-    (name "go-github-com-zeebo-bencode")
-    (version "1.0.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/zeebo/bencode")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0c6bw1if1vbcr9l4684a4jdri8z31m8msjpp7z6y2p9s1jqjhkrp"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:import-path "github.com/zeebo/bencode"))
-    (home-page "https://github.com/zeebo/bencode")
-    (synopsis "Bencode marshal and unmarshal library")
-    (description
-     "This library implements encoding and decoding of
-@url{https://wiki.theory.org/BitTorrentSpecification#Bencoding, bencoded}
-objects.")
-    (license license:expat)))
-
 (define-public go-github-com-zeebo-errs
   (package
     (name "go-github-com-zeebo-errs")
@@ -30251,31 +30078,6 @@ connections.")
       "This package provides a pretty printing library for Golang values.")
     (license license:expat)))
 
-(define-public go-github-com-zyedidia-clipboard
-  (package
-    (name "go-github-com-zyedidia-clipboard")
-    (version "1.0.4")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/zyedidia/clipboard")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1nrs2ll6dh31wyzxh2zbykwvpavhlpzysfk6qgfj5s4rz6ck8glz"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:tests? #f      ;requires clipboard (xclip or xsel)
-      #:import-path "github.com/zyedidia/clipboard"))
-    (home-page "https://github.com/zyedidia/clipboard")
-    (synopsis "Clipboard for Golang")
-    (description
-     "Package clipboard read/write on clipboard.  It's an alternative fork of
-@url{https://github.com/atotto/clipboard}.")
-    (license license:bsd-3)))
-
 (define-public go-github-com-zyedidia-clipper
   (package
     (name "go-github-com-zyedidia-clipper")
@@ -30784,7 +30586,7 @@ Identifier (RFC3986) specification in Go.")
 (define-public go-go-mau-fi-util
   (package
     (name "go-go-mau-fi-util")
-    (version "0.9.9")
+    (version "0.8.4")
     (source
      (origin
        (method git-fetch)
@@ -30793,7 +30595,7 @@ Identifier (RFC3986) specification in Go.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1d6365n4j5hx172mi5f9rk49l7cgcbf8qvi721b0l34j2m036rsy"))))
+        (base32 "0zzkrbwgbxfppsxjck8qgj4xxzpiq25sx4p3zwjh6s1yz3kfb97p"))))
     (build-system go-build-system)
     (arguments
      (list

gnu/packages/guile-xyz.scm

@@ -4019,38 +4019,6 @@ with documentation.
     ;; details.
     (license license:gpl3+)))
 
-(define-public guile-scriba
-  (package
-    (name "guile-scriba")
-    (version "0.1.2")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://codeberg.org/jjba23/scriba.git")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1chhbhy21g6zghc3alpqhvb6nizylmzzapjariykv41f47ynhljs"))))
-    (build-system guile-build-system)
-    (arguments
-     (list
-      #:source-directory "src"))
-    (propagated-inputs (list guile-json-4))
-    (inputs (list guile-3.0))
-    (synopsis "Structured logging framework for Guile Scheme")
-    (description
-     "Scriba is a structured logging library for GNU Guile that prioritizes
-flexibility and observability.  It provides modular log routing, formatting,
-and filtering, allowing developers to generate human-readable console logs
-during development and machine-readable JSON logs for production environments.
-Key features include an auto-logger configured via environment variables,
-dynamically scoped log contexts using Scheme parameters, ahead-of-time log
-level filtering, and minimal runtime overhead achieved through memoization
-and compile-time macros.")
-    (home-page "https://codeberg.org/jjba23/scriba")
-    (license license:lgpl3+)))
-
 (define-public guile-simple-iterators
   (let ((commit "50f16a2b2aa57e657e52e19fb3c35bdc182cfa36")
         (revision "0"))
@@ -7558,7 +7526,7 @@ in a large number of randomly generated test cases.")
 (define-public guile-veritas
   (package
     (name "guile-veritas")
-    (version "0.3.0")
+    (version "0.1.6")
     (source
      (origin
        (method git-fetch)
@@ -7567,13 +7535,13 @@ in a large number of randomly generated test cases.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1i64pd5pcx37i25hnks7zj8pbwf1fdy0s5y9ic2sgn800zqq1dxy"))))
+        (base32 "1h4si2p8gj4wfhvn4cshga2kjxf59vd4nwvxkc2i3g5gv3kxhm3k"))))
     (build-system guile-build-system)
     (arguments
      (list
       #:source-directory "src"))
     (native-inputs (list guile-3.0))
-    (propagated-inputs (list guile-fibers guile-json-4))
+    (propagated-inputs (list guile-fibers))
     (home-page "https://codeberg.org/jjba23/veritas")
     (synopsis "Testing framework for Guile")
     (description

gnu/packages/kde-frameworks.scm

@@ -4540,7 +4540,7 @@ to separate the structure of documents from the data they contain.")
     (native-inputs
      (list extra-cmake-modules kdoctools pkg-config))
     (inputs
-     (list gpgme
+     (list gpgme-2
            kauth
            kcodecs
            kconfig
@@ -4585,7 +4585,7 @@ the passwords on KDE work spaces.")
     (native-inputs
      (list extra-cmake-modules kdoctools-5))
     (inputs
-     (list gpgme
+     (list gpgme-2
            kauth-5
            kcodecs-5
            kconfig-5

gnu/packages/kde-pim.scm

@@ -581,7 +581,7 @@ PIM data into Akonadi for use in KDE PIM applications.")
            akonadi-mime
            boost
            breeze-icons
-           gpgme
+           gpgme-2
            grantleetheme
            kcmutils
            kcontacts
@@ -785,7 +785,7 @@ information.")
            akonadi-mime
            akonadi-search
            boost
-           gpgme
+           gpgme-2
            grantleetheme
            kcalendarcore
            kcmutils
@@ -1552,7 +1552,7 @@ protocol for querying and modifying directory services running over TCP/IP.")
            kdoctools))
     (inputs
      (list boost
-           gpgme
+           gpgme-2
            kcmutils
            kcodecs
            kconfig
@@ -1614,7 +1614,7 @@ and retrieving certificates from LDAP servers.")
            akonadi-mime
            akonadi-search
            boost
-           gpgme
+           gpgme-2
            grantleetheme
            kaddressbook
            kbookmarks
@@ -1788,7 +1788,7 @@ KMail.")
     (inputs
      (list akonadi-contacts
            boost
-           gpgme
+           gpgme-2
            grantleetheme
            karchive
            kcodecs
@@ -1972,7 +1972,7 @@ using a Qt/KMime C++ API.")
      (list akonadi-contacts
            akonadi-search
            boost
-           gpgme
+           gpgme-2
            grantleetheme
            karchive
            kcalendarcore
@@ -2634,7 +2634,7 @@ various Google services.")
      (list extra-cmake-modules kdoctools qttools))
     (inputs
      (list boost
-           gpgme
+           gpgme-2
            kcodecs
            kcompletion
            kconfig
@@ -2648,7 +2648,7 @@ various Google services.")
            kpimtextedit
            qgpgme))
     (propagated-inputs
-     (list gpgme qgpgme))
+     (list gpgme-2 qgpgme))
     (arguments
      (list
       #:qtbase qtbase

gnu/packages/kde-utils.scm

@@ -344,7 +344,7 @@ your computer.")
                 "02g9k51srrqslapjxzcymnmy9v1frv9pkgg8wmf6d0607hwkaff5"))))
     (build-system qt-build-system)
     (native-inputs (list extra-cmake-modules))
-    (inputs (list gpgme
+    (inputs (list gpgme-2
                   kauth
                   karchive
                   kcoreaddons

gnu/packages/libidn.scm

@@ -60,14 +60,14 @@ Java libraries.")
 (define-public libidn2
   (package
     (name "libidn2")
-    (version "2.3.7")
+    (version "2.3.8")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnu/libidn/" name "-" version
                                   ".tar.gz"))
               (sha256
                (base32
-                "0r3xzmmrx4hsc53jdncd5yqmkwzjgc4vh4hfkndm3f8hns8sf8ac"))))
+                "0ykqq39yacg9vvf2alyl5sskbfr531dmzwrgyzhj25hpyqdr2mzm"))))
     (inputs
      (list libunistring))
     (build-system gnu-build-system)

gnu/packages/maths.scm

@@ -11732,35 +11732,3 @@ use the library and researchers to make new capabilities available under a
 common interface.
 ")
     (license license:bsd-3)))
-
-(define-public xdmf
-  (package
-    (name "xdmf")
-    ;; Project does not publish releases / tags
-    (properties '((commit . "04a84bab0eb1568e0f1a27c8fb60c6931efda003")
-                  (revision . "0")))
-    (version (git-version "3.0.0"
-                          (assoc-ref properties 'revision)
-                          (assoc-ref properties 'commit)))
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://gitlab.kitware.com/xdmf/xdmf")
-              (commit (assoc-ref properties 'commit))))
-       (file-name (git-file-name name version))
-       (patches
-        (search-patches "xdmf-3.0.0-hdf5.patch"))
-       (sha256
-        (base32 "06k4vibkvgxlzkn06x470aq5q18p7yhql8awrpdz3czys3z8i288"))))
-    (build-system cmake-build-system)
-    (arguments
-     (list #:tests? #f)) ;has no tests
-    (inputs
-     (list boost hdf5 libxml2))
-    (home-page "https://www.xdmf.org/index.html")
-    (synopsis "XDMF library")
-    (description
-     "This package provides the eXtensible Data Model and Format (XDMF) C++
-library.")
-    (license license:bsd-4)))

gnu/packages/matrix.scm

@@ -11,7 +11,6 @@
 ;;; Copyright © 2025 Arjan Adriaanse <arjan@adriaan.se>
 ;;; Copyright © 2025 Sharlatan Hellseher <sharlatanus@gmail.com>
 ;;; Copyright © 2026 Zheng Junjie <z572@z572.online>
-;;; Copyright © 2026 orahcio <orahcio@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -60,7 +59,7 @@
 (define-public mautrix-whatsapp
   (package
     (name "mautrix-whatsapp")
-    (version "0.2605.0")
+    (version "0.11.2")
     (source
      (origin
        (method git-fetch)
@@ -69,7 +68,7 @@
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "02gmzby57vn5cc23m2laqcqqkvghlabm08fzjzqfzx8g18cmymas"))))
+        (base32 "0wn9kldhh865w5mbg3cl61m0db9nr7zl1j8lqs2dixsaihv1lbnx"))))
     (build-system go-build-system)
     (arguments
      (list
@@ -106,13 +105,7 @@
          ;; go.mau.fi/webp/webp.go:14:12: pattern internal: cannot embed
          ;; directory internal: contains no embeddable files
          ".*\\.c"
-         ".*\\.h"
-         ;; go.mau.fi/whatsmeow/argo/argo.go:16:13:
-         ;; pattern argo-wire-type-store.argo: cannot embed
-         ".*\\.argo"
-         ;; go.mau.fi/whatsmeow/argo/argo.go:19:13:
-         ;; pattern name-to-queryids.json: cannot embed
-         ".*\\.json")))
+         ".*\\.h")))
     (native-inputs
      (list olm
            go-github-com-gorilla-mux

gnu/packages/messaging.scm

@@ -47,7 +47,6 @@
 ;;; Copyright © 2025 Evgeny Pisemsky <mail@pisemsky.site>
 ;;; Copyright © 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2025 Adrien 'neox' Bourmault <neox@gnu.org>
-;;; Copyright © 2026 orahcio <orahcio@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -3460,56 +3459,6 @@ a persistent connection to an IRC server, acting as a proxy and buffer for
 a number of clients.")
     (license license:gpl3+)))
 
-(define-public whatscli
-  (package
-    (name "whatscli")
-    (version "1.1.4")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/normen/whatscli")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0ijp0783h4hivj33qi10azhq1bl512jq1wrva2alpkv7wp4qhnw6"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:install-source? #f
-      #:import-path "github.com/normen/whatscli"
-      #:embed-files #~(list ".*\\.argo" ".*\\.json" ".*\\.sql")))
-    (native-inputs
-     (list go-code-rocketnine-space-tslocum-cbind
-           go-github-com-adrg-xdg
-           go-github-com-gdamore-tcell-v2
-           go-github-com-gen2brain-beeep
-           go-github-com-mattn-go-colorable
-           go-github-com-mattn-go-sqlite3
-           go-github-com-rivo-tview
-           go-github-com-skip2-go-qrcode
-           go-github-com-skratchdot-open-golang
-           go-github-com-zyedidia-clipboard
-           go-go-mau-fi-whatsmeow
-           go-google-golang-org-protobuf
-           go-gopkg-in-ini-v1))
-    (home-page "https://github.com/normen/whatscli")
-    (synopsis "Command line interface for WhatsApp")
-    (description
-     "WhatsCLI is a command-line interface for WhatsApp that connects
-through the Web App API without requiring a browser.  It provides a
-terminal-based user interface built with tview, featuring:
-@itemize
-@item Sending and receiving WhatsApp messages in a terminal
-@item QR code setup for simple authentication
-@item Downloading and opening image, video, audio, and document attachments
-@item Sending images, video, audio, and document attachments
-@item Basic group management capabilities
-@item Desktop notifications support
-@item Color customization options
-@end itemize")
-    (license license:expat)))
-
 (define-public weechat-wee-slack
   (package
     (name "weechat-wee-slack")

gnu/packages/patches/cianna-remove-error-for-missing-cuda.patch

@@ -0,0 +1,32 @@
+From 5eed2d2ca7c13c08ca7eb92fc4a78c30ca4b6b3d Mon Sep 17 00:00:00 2001
+From: Hellseher <sharlatanus@gmail.com>
+Date: Sat, 18 Apr 2026 08:26:29 +0000
+Subject: [PATCH] Remove CUDA error handling from network.c
+
+Removed error handling for CUDA compilation check.
+
+Fixes: https://github.com/Deyht/CIANNA/issues/4
+---
+ src/network.c | 9 ---------
+ 1 file changed, 9 deletions(-)
+
+diff --git a/src/network.c b/src/network.c
+index d454f64..5a9497c 100644
+--- a/src/network.c
++++ b/src/network.c
+@@ -155,15 +155,6 @@ CIANNA V-1.0.1.2 stable build (04/2026), by D.Cornu\n\
+ 		init_cuda(networks[network_number]);
+ 	#endif
+ 	
+-	#ifndef CUDA
+-	if(comp_int == C_CUDA)
+-	{
+-		printf("\n ERROR: compute method set to CUDA while CIANNA was not compiled for it.\n");
+-		printf(" Install Nvidia CUDA and recompile CIANNA with the appropriate option.\n\n");
+-		exit(EXIT_FAILURE);
+-	}
+-	#endif
+-	
+ 	#ifndef BLAS
+ 	if(comp_int == C_BLAS)
+ 	{

gnu/packages/patches/gnutls-no-which.patch

@@ -1,92 +0,0 @@
-Upstream-status: 
-
-diff --git a/tests/pkcs11-tool.sh b/tests/pkcs11-tool.sh
-index 2d650b52f..e64803fc3 100755
---- a/tests/pkcs11-tool.sh
-+++ b/tests/pkcs11-tool.sh
-@@ -64,7 +64,7 @@ if ! test -f "${SOFTHSM_MODULE}"; then
- 	exit 77
- fi
- 
--if [ -z "$(which pkcs11-tool 2>/dev/null)" ]; then
-+if ! command -v pkcs11-tool >/dev/null; then
- 	echo "Need pkcs11-tool from opensc package to run this test."
- 	exit 77
- fi
-diff --git a/tests/tpm2.sh b/tests/tpm2.sh
-index d48364c6c..a03945da8 100755
---- a/tests/tpm2.sh
-+++ b/tests/tpm2.sh
-@@ -29,22 +29,22 @@ if ! test -x "${CERTTOOL}"; then
- 	exit 77
- fi
- 
--if [ -z "$(which swtpm 2>/dev/null)" ]; then
-+if ! command -v swtpm >/dev/null; then
- 	echo "Need swtpm package to run this test."
- 	exit 77
- fi
- 
--if [ -z "$(which ncat 2>/dev/null)" ]; then
-+if ! command -v ncat >/dev/null; then
- 	echo "Need ncat from nmap-ncat package to run this test."
- 	exit 77
- fi
- 
--if [ -z "$(which tpm2_startup 2>/dev/null)" ]; then
-+if ! command -v tpm2_startup >/dev/null; then
- 	echo "Need tpm2_startup from tpm2-tools package to run this test."
- 	exit 77
- fi
- 
--if [ -z "$(which base64 2>/dev/null)" ]; then
-+if ! command -v base64 >/dev/null; then
- 	echo "Need the base64 tool to run this test."
- 	exit 77
- fi
-@@ -58,7 +58,7 @@ case `"$OPENSSL" version` in
- 	;;
- esac
- 
--if [ -z "$(which tpm2tss-genkey 2>/dev/null)" ]; then
-+if ! command -v tpm2tss-genkey >/dev/null; then
- 	echo "Need tpm2tss-genkey from tpm2-tss-engine package to run this test."
- 	exit 77
- fi
-diff --git a/tests/tpmtool_test.sh b/tests/tpmtool_test.sh
-index a14242808..962d571f6 100755
---- a/tests/tpmtool_test.sh
-+++ b/tests/tpmtool_test.sh
-@@ -28,27 +28,27 @@ if [ "$(id -u)" -ne 0 ]; then
- 	exit 77
- fi
- 
--if [ -z "$(which swtpm 2>/dev/null)" ]; then
-+if ! command -v swtpm >/dev/null; then
- 	echo "Need swtpm package to run this test."
- 	exit 77
- fi
- 
--if [ -z "$(which tcsd 2>/dev/null)" ]; then
-+if ! command -v tcsd >/dev/null; then
- 	echo "Need tcsd (TrouSerS) package to run this test."
- 	exit 77
- fi
- 
--if [ -z "$(which tpm_createek 2>/dev/null)" ]; then
-+if ! command -v tpm_createek >/dev/null; then
- 	echo "Need tpm_createek from tpm-tools package to run this test."
- 	exit 77
- fi
- 
--if [ -z "$(which ncat 2>/dev/null)" ]; then
-+if ! command -v ncat >/dev/null; then
- 	echo "Need ncat from nmap-ncat package to run this test."
- 	exit 77
- fi
- 
--if [ -z "$(which expect 2>/dev/null)" ]; then
-+if ! command -v expect >/dev/null; then
- 	echo "Need expect from expect package to run this test."
- 	exit 77
- fi

gnu/packages/patches/ogs-6.5.7-netcdfconverter.patch

@@ -0,0 +1,23 @@
+Upstream fix
+
+https://gitlab.opengeosys.org/ogs/ogs/-/commit/9a8399b0d3cff032e70fe79a85dc35c4e7c662f2
+
+diff --git a/Applications/Utils/FileConverter/NetCdfConverter.cpp b/Applications/Utils/FileConverter/NetCdfConverter.cpp
+index c6fb9f151d..622bd2cd54 100644
+--- a/Applications/Utils/FileConverter/NetCdfConverter.cpp
++++ b/Applications/Utils/FileConverter/NetCdfConverter.cpp
+@@ -232,11 +232,12 @@ static bool dimensionSelectionLoop(NcVar const& var,
+     if (n_dims > 1)
+     {
+         std::string temp_str("");
+-        cout << "Is the parameter time-dependent?\n";
++        std::cout << "Is the parameter time-dependent?\n";
+         while (dim_idx_map[0] == std::numeric_limits<std::size_t>::max() &&
+                is_time_dep == true)
+         {
+-            cout << "Enter ID for temporal dimension or \"c\" to continue: ";
++            std::cout
++                << "Enter ID for temporal dimension or \"c\" to continue: ";
+             std::getline(std::cin, temp_str);
+             std::stringstream str_stream(temp_str);
+             if (str_stream.str() == "c" || str_stream.str() == "continue")

gnu/packages/patches/python-gpg-setup-72.patch

@@ -1,22 +0,0 @@
-Inspired by
-https://github.com/gentoo/gentoo/commit/2ad1ddf9b8b0e0b1f91fc3dd9412ad2f9c1346c3
-see also
-https://dev.gnupg.org/rMecd0c86d62351d267bdc9566286c532a394c711b
-Gemeinsame Unterverzeichnisse: gpg-1.10.0.alt/examples und gpg-1.10.0/examples.
-Gemeinsame Unterverzeichnisse: gpg-1.10.0.alt/gpg und gpg-1.10.0/gpg.
-diff -u gpg-1.10.0.alt/setup.py gpg-1.10.0/setup.py
---- gpg-1.10.0.alt/setup.py	2025-12-13 21:18:02.595203761 +0100
-+++ gpg-1.10.0/setup.py	2025-12-13 21:19:42.624197460 +0100
-@@ -220,9 +220,9 @@
-     def run(self):
-         self._generate()
- 
--        swig_sources.extend((self._in_build_base('gpgme.i'), self._in_build_base('helpers.c')))
--        swig_opts.extend(['-I' + self.build_base,
--                          '-outdir', os.path.join(self.build_lib, 'gpg')])
-+        swige.sources.extend((self._in_build_base('gpgme.i'), self._in_build_base('helpers.c')))
-+        swige.swig_opts.extend(['-I' + self.build_base,
-+                               '-outdir', os.path.join(self.build_lib, 'gpg')])
-         include_dirs.insert(0, self.build_base)
- 
-         self.run_command('build_ext')

gnu/packages/patches/xdmf-3.0.0-hdf5.patch

@@ -1,45 +0,0 @@
-From 92a851f1acb87ad5367eb62f9b97785bedb700bb Mon Sep 17 00:00:00 2001
-From: Dmitri Naumov <github@naumov.de>
-Date: Thu, 28 Oct 2021 22:34:00 +0200
-Subject: [PATCH] Detect if hid_t is defined in new versions of HDF5
-
-In HDF5 development the header file guards were changed,
-namely the leading underscore was removed. This lead to
-a redefinition of the hid_t type, which is int64_t.
-
-The change happened in commit
-https://github.com/HDFGroup/hdf5/commit/c17b4b93d680340af2b3f2c026f2c03c3baeb33ahttps://github.com/HDFGroup/hdf5/commit/c17b4b93d680340af2b3f2c026f2c03c3baeb33a
-and is published in HDF5 version hdf5-1_13_0-rc6.
----
- core/XdmfHDF5Controller.hpp | 2 +-
- core/XdmfHDF5Writer.hpp     | 2 +-
- 2 files changed, 2 insertions(+), 2 deletions(-)
-
-diff --git a/core/XdmfHDF5Controller.hpp b/core/XdmfHDF5Controller.hpp
-index c5c15d0a..b52bab3f 100644
---- a/core/XdmfHDF5Controller.hpp
-+++ b/core/XdmfHDF5Controller.hpp
-@@ -30,7 +30,7 @@
- 
- // So that hdf5 does not need to be included in the header files
- // It would add a dependancy to programs that use Xdmf
--#ifndef _H5Ipublic_H
-+#if !defined(_H5Ipublic_H) && !defined(H5Ipublic_H)
-   #ifndef XDMF_HID_T
-   #define XDMF_HID_T
-     typedef int hid_t;
-diff --git a/core/XdmfHDF5Writer.hpp b/core/XdmfHDF5Writer.hpp
-index cfbec6f4..6f8cfd4f 100644
---- a/core/XdmfHDF5Writer.hpp
-+++ b/core/XdmfHDF5Writer.hpp
-@@ -31,7 +31,7 @@
- 
- // So that hdf5 does not need to be included in the header files
- // It would add a dependancy to programs that use Xdmf
--#ifndef _H5Ipublic_H
-+#if !defined(_H5Ipublic_H) && !defined(H5Ipublic_H)
-   #ifndef XDMF_HID_T
-   #define XDMF_HID_T
-     typedef int hid_t;
--- 
-GitLab

gnu/packages/prolog.scm

@@ -237,7 +237,7 @@ it.")
 (define-public trealla
   (package
     (name "trealla")
-    (version "2.100.25")
+    (version "2.100.24")
     (source
      (origin
        (method git-fetch)
@@ -246,7 +246,7 @@ it.")
           (url "https://github.com/trealla-prolog/trealla")
           (commit (string-append "v" version))))
        (sha256
-        (base32 "1si84zaihsi2zwr0qdfr6kjcrly6ih1br0r6v58xm9v9db5zpx6x"))
+        (base32 "09jm5hs2lv481yzf76p646jx6467zx98bbbsg24xh3glk1f9gaaq"))
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (inputs

gnu/packages/python-web.scm

@@ -3392,34 +3392,6 @@ files.")
 code asynchronously.")
     (license license:asl2.0)))
 
-(define-public python-requests-unixsocket
-  (package
-    (name "python-requests-unixsocket")
-    (version "0.4.1")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/msabramo/requests-unixsocket")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1f0pi31xqzm3cdag4s4gpdj36x169jwc8ibqvcwqz6h9c0pklf3n"))))
-    (build-system pyproject-build-system)
-    (native-inputs
-     (list python-pytest
-           python-setuptools
-           python-setuptools-scm
-           python-waitress))
-    (propagated-inputs
-     (list python-requests))
-    (home-page "https://github.com/msabramo/requests-unixsocket")
-    (synopsis "Use requests to talk HTTP via a UNIX domain socket")
-    (description
-     "This package provides an extension to @code{requests} which let it talk
-HTTP via a UNIX domain socket.")
-    (license license:asl2.0)))
-
 (define-public python-s3path
   (package
     (name "python-s3path")

gnu/packages/rocm-libs.scm

@@ -297,17 +297,7 @@ configurations deterministically based on compute and memory latencies.")
                     "availableArchs = ['"
                     (string-join (current-amd-gpu-targets) "', '") "']")))
               (setenv "TENSILE_ROCM_ASSEMBLER_PATH"
-                      (string-append (which "clang")))))
-          ;; Packages, such as rocblas, expect to be able to run those scripts
-          ;; in their CMake builds.
-          (add-after 'install 'adjust-tensile-binaries-permissions
-            (lambda* (#:key inputs outputs #:allow-other-keys)
-              (let ((site-packages (site-packages inputs outputs)))
-                (with-directory-excursion (string-append site-packages
-                                                         "/Tensile/bin")
-                  ;; Use `make-file-executable' once #7224 is merged.
-                  (chmod "Tensile" #o555)
-                  (chmod "TensileCreateLibrary" #o555))))))))
+                      (string-append (which "clang"))))))))
     (native-inputs
      (list python-filelock
            python-pandas

gnu/packages/sagemath.scm

@@ -365,7 +365,7 @@ database.")
 (define-public sage
   (package
     (name "sage")
-    (version "10.9")
+    (version "10.7")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -374,7 +374,7 @@ database.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1rbwhhxj6iizfcgbzd63lf1g1dh24253mmmzgfkvcbv6hx0l507h"))))
+                "0513nmym1shlj0vkb982hpj1v86f327w5kav0523wk1xljc432cx"))))
     (build-system pyproject-build-system)
     (native-inputs
       (list autoconf automake m4 pkg-config ; for ./bootstrap

gnu/packages/security-token.scm

@@ -14,7 +14,7 @@
 ;;; Copyright © 2021 Brice Waegeneire <brice@waegenei.re>
 ;;; Copyright © 2021 Sergey Trofimov <sarg@sarg.org.ru>
 ;;; Copyright © 2021 Dhruvin Gandhi <contact@dhruvin.dev>
-;;; Copyright © 2021 Ahmad Jarara <git@ajarara.io>
+;;; Copyright © 2021, 2026 Ahmad Jarara <ajarara@fastmail.com>
 ;;; Copyright © 2022, 2023 John Kehayias <john.kehayias@protonmail.com>
 ;;; Copyright © 2022 Petr Hodina <phodina@protonmail.com>
 ;;; Copyright © 2022 Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org>
@@ -1163,9 +1163,8 @@ phone and a running pcscd service are required.")
     (arguments
      (list
       #:configure-flags
-      #~(list (string-append "-DUDEV_RULES_DIR=" #$output "/lib/udev/rules.d"))
-      ;; regress tests enabled only for debug builds
-      #:tests? #f))
+      #~(list
+         (string-append "-DUDEV_RULES_DIR=" #$output "/lib/udev/rules.d"))))
     (synopsis "Library functionality and command-line tools for FIDO devices")
     (description "libfido2 provides library functionality and command-line
 tools to communicate with a FIDO device over USB, and to verify attestation

gnu/packages/tls.scm

@@ -151,14 +151,14 @@ in intelligent transportation networks.")
 (define-public p11-kit
   (package
     (name "p11-kit")
-    (version "0.25.5")
+    (version "0.26.2")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://github.com/p11-glue/p11-kit/releases/"
                            "download/" version "/p11-kit-" version ".tar.xz"))
        (sha256
-        (base32 "1rcq2578aq3ag288qnvdmj4a2wbihncndbr6iw0vxcfda1jail04"))))
+        (base32 "0a7qxkfaj7ayq5b3vw850h6ndr88f37ygmbk3qaa64s8v929zz89"))))
     (build-system gnu-build-system)
     (native-inputs
      (list nss-certs                    ;default certificates
@@ -210,7 +210,7 @@ living in the same process.")
 (define-public gnutls
   (package
     (name "gnutls")
-    (version "3.8.9")
+    (version "3.8.13")
     (source (origin
               (method url-fetch)
               ;; Note: Releases are no longer on ftp.gnu.org since the
@@ -218,10 +218,9 @@ living in the same process.")
               (uri (string-append "mirror://gnupg/gnutls/v"
                                   (version-major+minor version)
                                   "/gnutls-" version ".tar.xz"))
-              (patches (search-patches "gnutls-no-which.patch"))
               (sha256
                (base32
-                "1v9090cbajf02cw01idfbp0cgmgjn5091ff1b96hqryi0bc17qb9"))))
+                "0zn9m5nb3a4r9rh5ws3xaczbals7vrvy7ahl9xnl5hh9pz0qxvgz"))))
     (build-system gnu-build-system)
     (arguments
      (list #:tests? (not (or (%current-target-system)

gnu/packages/xfce.scm

@@ -1,7 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2014, 2015, 2024 宋文武 <iyzsong@envs.net>
 ;;; Copyright © 2014, 2015 Mark H Weaver <mhw@netris.org>
-;;; Copyright © 2016, 2026 Andreas Enge <andreas@enge.fr>
+;;; Copyright © 2016 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2016 Florian Paul Schmidt <mista.tapas@gmx.net>
 ;;; Copyright © 2016, 2020 Kei Kebreau <kkebreau@posteo.net>
 ;;; Copyright © 2017, 2019 Ricardo Wurmus <rekado@elephly.net>
@@ -68,7 +68,6 @@
   #:use-module (gnu packages polkit)
   #:use-module (gnu packages popt)
   #:use-module (gnu packages python)
-  #:use-module (gnu packages python-build)
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages pulseaudio)
   #:use-module (gnu packages search)
@@ -826,7 +825,7 @@ like appearance, display, keyboard and mouse settings.")
 (define-public thunar
   (package
     (name "thunar")
-    (version "4.20.8")                           ;stable version = even minor
+    (version "4.20.6")                           ;stable version = even minor
     (source
      (origin
        (method git-fetch)
@@ -835,7 +834,7 @@ like appearance, display, keyboard and mouse settings.")
              (commit (string-append name "-" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0605a9vxva3bplnv4pj0qf1gk1jxacqg03czhi396qs1fgs6ihw1"))))
+        (base32 "1ayjnnpl15v4h3rpay1a127cvrlaj6qwydk496083i9494j6cp9f"))))
     (build-system glib-or-gtk-build-system)
     (arguments
      '(#:configure-flags '("--enable-maintainer-mode" ;for thunar-marshal.c
@@ -1028,7 +1027,7 @@ menu.")
         (base32 "1x39pbdx4186f7bkrc9ab5q7qs783mivm2j1msyf9m1nh09y617f"))))
     (build-system gnu-build-system)
     (native-inputs
-     (list python-setuptools xfce4-dev-tools))
+     (list xfce4-dev-tools))
     (inputs
      (list exo
            thunar

gnu/services/monitoring.scm

@@ -225,7 +225,7 @@ HTTP.")
   make-prometheus-node-exporter-configuration
   prometheus-node-exporter-configuration?
   (package prometheus-node-exporter-configuration-package
-           (default prometheus-node-exporter))
+           (default go-github-com-prometheus-node-exporter))
   (web-listen-address prometheus-node-exporter-web-listen-address
                       (default ":9100"))
   (textfile-directory prometheus-node-exporter-textfile-directory

gnu/services/web.scm

@@ -329,7 +329,6 @@
             mumi-configuration-data-directory
             mumi-configuration-rsync-remote
             mumi-configuration-rsync-flags
-            mumi-configuration-rsync-and-index-event
             mumi-configuration-mailer?
             mumi-configuration-sender
             mumi-configuration-smtp
@@ -2356,9 +2355,6 @@ WSGIPassAuthorization On
   (rsync-remote mumi-configuration-rsync-remote)
   (rsync-flags mumi-configuration-rsync-flags
                (default '()))
-  (rsync-and-index-event mumi-configuration-rsync-and-index-event
-                         ;; Run every 5 minutes by default.
-                         (default #~(calendar-event #:minutes '#$(iota 12 0 5))))
   (mailer? mumi-configuration-mailer? (default #t))
   (sender  mumi-configuration-sender (default #f))
   (smtp    mumi-configuration-smtp (default #f))
@@ -2469,7 +2465,7 @@ WSGIPassAuthorization On
                            "/lib/locale")))
 
   (match-record config <mumi-configuration>
-    (mumi rsync-and-index-event mailer? sender smtp)
+    (mumi mailer? sender smtp)
     (list (shepherd-service
             (provision '(mumi))
             (documentation "Mumi bug-tracking web interface.")
@@ -2486,7 +2482,9 @@ WSGIPassAuthorization On
             (provision '(mumi-rsync-and-index))
             (modules '((shepherd service timer)))
             (start #~(make-timer-constructor
-                      #$rsync-and-index-event
+                      ;; Run every 5 minutes, unless an instance of
+                      ;; this job is already running.
+                      (calendar-event #:minutes '#$(iota 12 0 5))
                       (command (list #$(mumi-rsync-and-index config)))
                       #:log-file #$%mumi-rsync-and-index-log
                       #:max-duration (* 2 60 60)

guix/packages.scm

@@ -120,8 +120,6 @@
             define-deprecated-package
             package-field-location
 
-            package-location<?
-
             this-package-input
             this-package-native-input
 
@@ -876,15 +874,6 @@ if FIELD could not be found."
         #f)))
     (_ #f)))
 
-(define (package-location<? p1 p2)
-  "Return true if P1's location is \"before\" P2's."
-  (let ((loc1 (package-location p1))
-        (loc2 (package-location p2)))
-    (and loc1 loc2
-         (if (string=? (location-file loc1) (location-file loc2))
-             (< (location-line loc1) (location-line loc2))
-             (string<? (location-file loc1) (location-file loc2))))))
-
 (define-syntax-rule (this-package-input name)
   "Return the input NAME of the package being defined--i.e., an input
 from the ‘inputs’ or ‘propagated-inputs’ field.  Native inputs are not

guix/scripts/lint.scm

@@ -11,7 +11,6 @@
 ;;; Copyright © 2018, 2019 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2019, 2020 Simon Tournier <zimon.toutoune@gmail.com>
 ;;; Copyright © 2020 Brice Waegeneire <brice@waegenei.re>
-;;; Copyright © 2024, 2026 Herman Rimm <herman@rimm.ee>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -29,10 +28,8 @@
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 (define-module (guix scripts lint)
-  #:use-module (guix diagnostics)
   #:use-module (guix packages)
   #:use-module (guix lint)
-  #:use-module (guix modules)
   #:use-module (guix ui)
   #:use-module (guix store)
   #:use-module (guix scripts)
@@ -90,28 +87,6 @@
             checkers)
   (exit 0))
 
-(define* (process-whole-file file checkers #:key store)
-  "Run the given CHECKERS on packages in FILE and check that the
-packages are sorted alphabetically."
-  (load* file '())
-  (let* ((module (resolve-interface (file-name->module-name file)))
-         (packages (sort (fold-packages cons '() (list module))
-                         package-location<?)))
-    (fold (lambda (package previous)
-            (let ((line (location-line (package-location package)))
-                  (name (package-name package)))
-              (run-checkers package checkers #:store store)
-              (and (string<? name previous)
-                   (emit-warnings
-                     (list (lint-warning
-                             (package package)
-                             (location (location file line 0))
-                             (message-text
-                              (G_ "breaks from alphabetical order"))
-                             (message-data '())))))
-              name))
-          "" packages)))
-
 
 ;;;
 ;;; Command-line options.
@@ -140,9 +115,6 @@ run the checkers on all packages.\n"))
   -L, --load-path=DIR    prepend DIR to the package module search path"))
   (newline)
   (display (G_ "
-  -f, --whole-file       check the packages defined in the given file(s)"))
-  (newline)
-  (display (G_ "
   -h, --help             display this help and exit"))
   (display (G_ "
   -l, --list-checkers    display the list of available lint checkers"))
@@ -189,9 +161,6 @@ run the checkers on all packages.\n"))
                 (lambda args
                   (leave-on-EPIPE (show-help))
                   (exit 0)))
-        (option '(#\f "whole-file") #f #f
-                (lambda (opt name arg result)
-                  (alist-cons 'whole-file? #t result)))
         (option '(#\l "list-checkers") #f #f
                 (lambda (opt name arg result)
                   (alist-cons 'list? #t result)))
@@ -218,17 +187,12 @@ run the checkers on all packages.\n"))
                         #:build-options? #f))
 
   (let* ((opts (parse-options))
-         (whole-file? (assoc-ref opts 'whole-file?))
-         (args (filter-map (if whole-file?
-                               (match-lambda
-                                 (('argument . file) file)
-                                 (_ #f))
-                               (match-lambda
-                                 (('argument . spec)
-                                  (specification->package spec))
-                                 (('expression . exp)
-                                  (read/eval-package-expression exp))
-                                 (_ #f)))
+         (args (filter-map (match-lambda
+                             (('argument . spec)
+                              (specification->package spec))
+                             (('expression . exp)
+                              (read/eval-package-expression exp))
+                             (_ #f))
                            (reverse opts)))
          (no-checkers (or (assoc-ref opts 'exclude) '()))
          (the-checkers (filter (lambda (checker)
@@ -257,13 +221,6 @@ run the checkers on all packages.\n"))
         (call-maybe-with-store
          (lambda (store)
            (cond
-            (whole-file?
-             (when (null? args)
-               (warning (G_ "no files specified, nothing to do~%")))
-             (for-each
-               (lambda (file)
-                 (process-whole-file file checkers #:store store))
-               args))
             ((null? args)
              (fold-packages (lambda (p r) (run-checkers p checkers
                                                         #:store store)) '()))

guix/scripts/style.scm

@@ -603,6 +603,15 @@ bailing out~%"))
                         #:format-comment canonicalize-comment
                         #:format-vertical-space canonicalize-vertical-space)))))
 
+(define (package-location<? p1 p2)
+  "Return true if P1's location is \"before\" P2's."
+  (let ((loc1 (package-location p1))
+        (loc2 (package-location p2)))
+    (and loc1 loc2
+         (if (string=? (location-file loc1) (location-file loc2))
+             (< (location-line loc1) (location-line loc2))
+             (string<? (location-file loc1) (location-file loc2))))))
+
 
 ;;;
 ;;; Whole-file formatting.

tests/guix-lint.sh

@@ -1,6 +1,5 @@
 # GNU Guix --- Functional package management for GNU
 # Copyright © 2014 Cyril Roelandt <tipecaml@gmail.com>
-# Copyright © 2026 Herman Rimm <herman@rimm.ee>
 #
 # This file is part of GNU Guix.
 #
@@ -36,20 +35,12 @@ cat > "$module_dir/foo.scm"<<EOF
   #:use-module (guix packages)
   #:use-module (gnu packages base))
 
-;; This definition uses (the line number of) the hello package location
-;; instead of generating a new one.
-(define-public hi hello)
-
 (define-public dummy
   (package (inherit hello)
     (name "dummy")
     (version "42")
     (synopsis "dummy package")
     (description "dummy package. Only used for testing purposes.")))
-
-(define-public bar
-  (package (inherit dummy)
-    (name "bar")))
 EOF
 
 GUIX_PACKAGE_PATH="$module_dir"
@@ -61,11 +52,10 @@ grep_warning ()
     echo $res
 }
 
-# Issues with the dummy package:
+# Three issues with the dummy package:
 # 1) the synopsis starts with the package name;
 # 2) the synopsis starts with a lower-case letter;
-# 3) the description has a single space following the end-of-sentence period;
-# 4) the alphabetically lesser bar package succeeds it.
+# 3) the description has a single space following the end-of-sentence period.
 
 out=`guix lint -c synopsis,description dummy 2>&1`
 test `grep_warning "$out"` -eq 3
@@ -79,12 +69,6 @@ test `grep_warning "$out"` -eq 1
 out=`guix lint -c description,synopsis dummy 2>&1`
 test `grep_warning "$out"` -eq 3
 
-working_dir="$(pwd)"
-cd "$module_dir"
-out=`guix lint -c name -f foo.scm 2>&1`
-cd "$working_dir"
-test `echo "$out" | grep -E -c "breaks from alphabetical order"` -eq 1
-
 guix lint -c synopsis,invalid-checker dummy 2>&1 | \
    grep -q 'invalid-checker: invalid checker'