Add Graal

Change-Id: I0350197af84ac351031e70a63fd0d483d022bad9
2026-07-07 21:14:07 +02:00 · 2026-01-01 18:33:49 +01:00
447 changed files with 46360 additions and 231174 deletions
@@ -98,27 +98,9 @@
  ((indent-tabs-mode . nil)

   ;; Emacs 28 changed the behavior of 'lisp-fill-paragraph', which causes the
-   ;; first line of package descriptions to extrude past 'fill-column', and
-   ;; somehow that is deemed more correct upstream (see:
-   ;; https://issues.guix.gnu.org/56197).
-   (eval . (progn
-             (require 'lisp-mode)
-             (defun emacs27-lisp-fill-paragraph (&optional justify)
-               (interactive "P")
-               (or (fill-comment-paragraph justify)
-                   (let ((paragraph-start
-                          (concat paragraph-start
-                                  "\\|\\s-*\\([(;\"]\\|\\s-:\\|`(\\|#'(\\)"))
-                         (paragraph-separate
-                          (concat paragraph-separate "\\|\\s-*\".*[,\\.]$"))
-                         (fill-column (if (and (integerp emacs-lisp-docstring-fill-column)
-                                               (derived-mode-p 'emacs-lisp-mode))
-                                          emacs-lisp-docstring-fill-column
-                                        fill-column)))
-                     (fill-paragraph justify))
-                   ;; Never return nil.
-                   t))
-             (setq-local fill-paragraph-function #'emacs27-lisp-fill-paragraph)))
+   ;; first line of package descriptions to extrude past 'fill-column'. The
+   ;; following variable reverts its behavior to the previous one.
+   (lisp-fill-paragraphs-as-doc-string nil)

   ;; This notably allows '(' in Paredit to not insert a space when the
   ;; preceding symbol is one of these.
@@ -36,8 +36,6 @@
   (name "efraim"))
  ("5DBE 23D3 9053 6526 7F8C  C76A FDB9 52BD 3F73 56D6"
   (name "ekaitz"))
-  ("50E1 7BE0 D210 C883 D675  3150 4A3D 07EF D05C 4045"
-   (name "fishinthecalculator"))
  (;; primary: "D1BD 1EB7 B655 AECE 0BA7  8F94 4940 7E7E 89CA 9B07"
   "0807 AC76 DFE8 4303 6D5F  5879 F51D 4A16 DCEE 6FA7"
   (name "futurile"))
@@ -49,7 +47,7 @@
  (;; primary: "220F 98D9 5E86 204C 0036  DA7B 6DEC 4360 408B 4185"
   "F4C2 D1DF 3FDE EA63 D1D3  0776 ACC6 6D09 CA52 8292"
   (name "hako"))
-  ("3D58 BE78 5C1B E400 E214  0755 43F4 B499 3A1F 9D20"
+  ("B943 509D 633E 80DD 27FC  4EED 634A 8DFF D3F6 31DF"
   (name "htgoebel"))
  ( ;; primary: "FECD 9EBA FAAD 1831 7E05  DAC0 E55F 4198 D2A7 0CD7"
   "6980 A9B9 5202 AA11 EB1D  8922 8499 AC88 F1A7 1CF2"
@@ -146,7 +146,6 @@ gnu/system/examples/lightweight-desktop\.tmpl      @guix/documentation
 gnu/system/examples/desktop\.tmpl                  @guix/documentation

 gnu/packages/electronics\.scm                      @guix/electronics
-gnu/packages/hdl\.scm                              @guix/electronics
 gnu/packages/libftdi\.scm                          @guix/electronics
 gnu/packages/engineering\.scm                      @guix/electronics
 gnu/packages/flashing-tools\.scm                   @guix/electronics
@@ -171,8 +170,6 @@ gnu/packages/game-development\.scm                 @guix/games
 gnu/packages/luanti\.scm                           @guix/games
 gnu/packages/esolangs\.scm                         @guix/games
 gnu/packages/motti\.scm                            @guix/games
-gnu/services/games\.scm                            @guix/games
-gnu/tests/games\.scm                               @guix/games
 guix/build/luanti-build-system\.scm                @guix/games

 etc/teams/gnome                                    @guix/gnome
@@ -219,8 +216,6 @@ tests/home-services\.scm                           @guix/home

 gnu/packages/mpi\.scm                              @guix/hpc
 gnu/packages/oneapi\.scm                           @guix/hpc
-gnu/packages/opencl\.scm                           @guix/hpc
-gnu/packages/parallel\.scm                         @guix/hpc
 gnu/packages/rocm\.scm                             @guix/hpc
 gnu/packages/sycl\.scm                             @guix/hpc
 gnu/packages/tbb\.scm                              @guix/hpc
@@ -275,8 +270,6 @@ gnu/packages/ibus\.scm                             @guix/localization

 gnu/packages/lxqt\.scm                             @guix/lxqt

-gnu/packages/mate\.scm                             @guix/mate
-

 gnu/build/icecat-extension\.scm                    @guix/mozilla
 gnu/packages/browser-extensions\.scm               @guix/mozilla
@@ -329,7 +322,7 @@ etc/manifests/release-desktop\.scm                 @guix/release

 gnu/packages/diffoscope\.scm                       @guix/reproduciblebuilds

-gnu/packages/(ruby)(-.+|)\.scm$                    @guix/ruby
+gnu/packages/ruby\.scm                             @guix/ruby
 guix/build/ruby-build-system\.scm                  @guix/ruby
 guix/build-system/ruby\.scm                        @guix/ruby
 guix/import/gem\.scm                               @guix/ruby
@@ -116,7 +116,6 @@ MODULES =					\
  guix/narinfo.scm				\
  guix/derivations.scm				\
  guix/grafts.scm				\
-  guix/remote-procedures.scm			\
  guix/repl.scm					\
  guix/rpm.scm					\
  guix/transformations.scm			\
@@ -297,7 +296,6 @@ MODULES =					\
  guix/build/toml.scm			\
  guix/search-paths.scm				\
  guix/packages.scm				\
-  guix/import/apache.scm			\
  guix/import/cabal.scm				\
  guix/import/composer.scm			\
  guix/import/cpan.scm				\
@@ -378,7 +376,6 @@ MODULES =					\
  guix/scripts/import/luanti.scm  		\
  guix/scripts/import/minetest.scm  		\
  guix/scripts/import/npm-binary.scm		\
-  guix/scripts/import/nuget.scm  		\
  guix/scripts/import/opam.scm			\
  guix/scripts/import/pypi.scm			\
  guix/scripts/import/stackage.scm		\
@@ -508,8 +505,7 @@ EXAMPLES =					\
  gnu/system/examples/plasma.tmpl		\
  gnu/system/examples/raspberry-pi-64.tmpl	\
  gnu/system/examples/raspberry-pi-64-nfs-root.tmpl	\
-  gnu/system/examples/vm-image.tmpl		\
-  gnu/system/examples/vm-image-efi.tmpl
+  gnu/system/examples/vm-image.tmpl

 GOBJECTS = $(MODULES:%.scm=%.go) guix/config.go $(dist_noinst_DATA:%.scm=%.go)

@@ -581,7 +577,6 @@ SCM_TESTS =					\
  tests/import/hexpm.scm			\
  tests/import/luanti.scm			\
  tests/import/npm-binary.scm			\
-  tests/import/nuget.scm			\
  tests/import/opam.scm				\
  tests/import/print.scm			\
  tests/import/pypi.scm				\
@@ -752,7 +747,7 @@ dist_fishcompletion_DATA = etc/completion/fish/guix.fish
 nodist_selinux_policy_DATA = etc/guix-daemon.cil

 # AppArmor profiles.
-dist_apparmor_profile_DATA =	\
+nodist_apparmor_profile_DATA =	\
  etc/apparmor.d/guix		\
  etc/apparmor.d/guix-daemon

@@ -776,12 +771,9 @@ EXTRA_DIST +=						\
  build-aux/compile-as-derivation.scm			\
  build-aux/config.rpath				\
  build-aux/convert-xref.scm				\
-  build-aux/cuirass/evaluate.scm			\
  build-aux/extract-syscall-ranges.sh			\
  build-aux/generate-authors.scm			\
-  build-aux/gitlog-to-changelog				\
  build-aux/git-version-gen				\
-  build-aux/keep-only-translated.scm			\
  build-aux/mdate-from-git.scm				\
  build-aux/test-driver.scm				\
  build-aux/update-NEWS.scm				\
@@ -1193,7 +1185,7 @@ release: all
 	$(MKDIR_P) "$(releasedir)"
 	@echo "Building guix inferior for current commit."
 	COMMIT="$$(git rev-parse HEAD)" &&					\
-	GUIX="$$(guix time-machine -q --commit=$$COMMIT)/bin/guix" &&		\
+	GUIX="$$(guix time-machine --commit=$$COMMIT)/bin/guix" &&		\
 	echo "Building artifacts for current commit: $$COMMIT." &&		\
 	ARTIFACTS="$$($$GUIX build --no-grafts					\
 		-f ./etc/teams/release/artifacts.scm)" &&			\
@@ -6,7 +6,6 @@ Copyright © 2013-2022 Ludovic Courtès <ludo@gnu.org>
 Copyright © 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
 Copyright © 2021, 2022, 2024 Maxim Cournoyer <maxim@guixotic.coop>
 Copyright © 2022 Mathieu Othacehe <othacehe@gnu.org>
-Copyright © 2026 Noé Lopez <noelopez@free.fr>

  Copying and distribution of this file, with or without modification,
  are permitted in any medium without royalty provided the copyright
@@ -17,77 +16,8 @@ Please send Guix bug reports to bug-guix@gnu.org.
 * Changes in 1.5.0 (since 1.4.0)
 ** Package management
 *** New ‘rpm’ format for the ‘guix pack’ command
-*** New ‘appimage’ format for the ‘guix pack’ command
-*** New ‘--max-layers’ and ‘--file’ options for the ‘guix pack’ command
-*** New ‘--roll-back’ and ‘--expression’ options for the ‘guix deploy’ command
-*** New ‘--with-version’ package transformation option
-*** New ‘--with-configure-flag’ package transformation option
-*** New ‘--nesting’ option to use Guix within ‘guix shell’ containers
-*** New ‘--emulate-fhs’ option for ‘guix shell’ containers
-*** New ‘--dependents’ and ‘--development’ options for ‘guix build’
-*** New ‘--interactive’ and ‘--list-types’ flags for ‘guix repl’
-*** The root file-system of ‘guix shell’ containers is now read-only
-*** New ‘--writable-root’ option for the ‘guix shell’ command
-*** Improved style rules for ‘guix style’
-*** New ‘guix locate’ command
-*** ‘guix refresh’ now honours the ‘--key-server’ option
-*** ‘guix git authenticate‘ now remembers introduction commit and signer
-*** ‘guix git authenticate’ now installs pre-push and post-merge git hooks
-*** System reconfiguration now supports kexec for fast reboot
-*** Hetzner Cloud is now supported by the ‘guix deploy’ command
-*** The Guix Daemon can now be run without root privileges
-*** ‘guix refresh’ can now target partial version
-*** New ‘guix import composer’ command
-*** New ‘guix import binary-npm’ command
-*** New ‘guix import nuget’ command
-*** New ‘graphml’ backend for guix graph
-*** New ‘cyclonedx-json’ backend for guix graph
-*** AppArmor profiles are now available for guix and guix-daemon
 ** Distribution
 *** ‘nss-certs’ is now included in ‘%base-packages’
-*** ‘udev-service-type’ now supports hardware configuration files
-*** ‘gdm-service-type’ now uses Wayland by default
-*** KDE Plasma 6.5 is now available with the new ‘plasma-desktop-service-type’
-*** GNOME was updated to version 44 with a more modular desktop service
-*** Declarative offloading with new ‘build-machines’ field of operating-system
-*** ‘containerd-service-type’ is no longer included with the Docker service
-*** ‘privileged-programs’ replaces ‘setuid-programs’ in ‘operating-system’
-*** The ‘postgresql’ field of ‘postgresql-configuration‘ is now mandatory
-*** The Rottlog service was replaced by new ‘log-rotation-service-type’
-*** The default system log has been changed to Shepherd’s ‘system-log’ service
-*** New recommended ‘%base-home-services’ variable for Guix Home
-*** UDisks now mounts removable devices in /run/media/$USER instead of /media
-*** Syncthing service received incompatible changes
-*** ‘node-build-system’ received incompatible changes
-*** New services for /etc/profile.d and /etc/bashrc.d
-*** New build system for clasp-cl
-*** New Rust packaging model
-*** C.utf8 locale is now supported by glibc
-*** Fully bootstrapped mono and zig are now available
-*** 64bit Hurd (x86_64-gnu) now has experimental support
-*** 12525 new packages
-*** 8911 package updates
-
-Noteworthy updates:
-bash 5.2.37, binutils 2.44, clojure 1.12.0, cups 2.4.14, emacs 30.2,
-gcc-toolchain 15.2.0, gdb 16.3, ghc 9.2.8, gimp 3.0.4, glibc 2.41,
-gnome 46.10, gnupg 2.4.7, go 1.25.3, guile 3.0.9, icecat 140.6.0-gnu1,
-icedtea 3.19.0, inkscape 1.3.2, julia 1.8.5, libreoffice 25.2.5.2,
-linux-libre 6.17.12, lxde 0.99.3, mate 1.28.2, ocaml 5.3.0, octave 10.3.0,
-openjdk 25, perl 5.36.0, python 3.11.14, racket 8.18, rust 1.85.1, r 4.5.2,
-sbcl 2.5.8, shepherd 1.0.9, xfce 4.20.0, xorg-server 21.1.21
-
-** Programming interfaces
-*** ‘(gnu system setuid)’ has been renamed to ‘(gnu system privilege)’
-*** Moved to a new Rust packaging model and repackaged all Rust applications
-*** Rust library packages have been moved to the guix-rust-past-crates channel
-*** Most Python packages now use the ‘pyproject-build-system’
-** Noteworthy bug fixes
-*** Daemon vulnerability allowing store corruption has been fixed
-*** Daemon vulnerability allowing takeover of build users has been fixed
-*** Daemon privilege escalation vulnerabilities fixed
-*** Daemon CVEs have been fixed
-CVE-2024-27297, CVE-2024-52867, CVE-2025-46415, CVE-2025-46416, CVE-2025-59378
 * Changes in 1.4.0 (since 1.3.0)
 ** Package management
 *** New ‘guix home’ command, for home environment management
@@ -1996,7 +1926,7 @@ zynaddsubfx@3.0.3, zziplib@0.13.69
 *** ‘guix pack’ now honors package transformation options
 *** ‘guix package --search’ no longer shows superseded packages
    (<https://bugs.gnu.org/30566>)
-*** ‘guix offload test’ reports errors more nicely
+*** ‘guix offload test’ reports errors more nicely 
    (<https://bugs.gnu.org/28057>)
 *** postgresql service is started through ‘pg_ctl’
    (<https://bugs.gnu.org/29992>)
@@ -5734,7 +5664,7 @@ Monad” in the manual.

 *** X session is executed from a login shell (<http://bugs.gnu.org/19119>)
 *** grub.cfg is now a garbage-collector root (<http://bugs.gnu.org/19160>)
-*** Substituter progress report properly formatted
+*** Substituter progress report properly formatted 
    (<http://bugs.gnu.org/19313>)
 *** Document permissions for /gnu/store (<http://bugs.gnu.org/19316>)
 *** Make sure config.go is newer than config.scm
@@ -5990,18 +5920,18 @@ This could cause problems with ancient Linux kernel.
 *** download: Use the 'SERVER NAME' TLS extension when possible
    (<http://bugs.gnu.org/18526>)
 *** libdaemon: Add alternate source URLs (<http://bugs.gnu.org/18639>)
-*** icu4c: Reinstate RUNPATH on shared libraries
+*** icu4c: Reinstate RUNPATH on shared libraries 
    (<http://bugs.gnu.org/18695>)
 *** nss-mdns: Add alternate source URLs (<http://bugs.gnu.org/18704>)
 *** download: Add "Accept: */*" to the HTTP headers
    (<http://bugs.gnu.org/18768>)
-*** guix-register: Do not attempt to create NIX_STORE_DIR
+*** guix-register: Do not attempt to create NIX_STORE_DIR 
    (<http://bugs.gnu.org/18689>)
 *** Allow Linux-libre to find our 'modprobe' command
    (<http://bugs.gnu.org/18525>)
 *** man-pages: Build sequentially (<http://bugs.gnu.org/18701>)
 *** Fix intermittent test failures involving GC (<http://bugs.gnu.org/18935>)
-*** guix import: pypi: Gracefully handle non-existent packages
+*** guix import: pypi: Gracefully handle non-existent packages 
    (<http://bugs.gnu.org/18831>)
 *** Make sure the shared library has the '.so' extension
    (<http://bugs.gnu.org/18521>)
@@ -3,7 +3,7 @@ exec guile --no-auto-compile -e main -s "$0" "$@"
 !#
 ;;;; test-driver.scm - Guile test driver for Automake testsuite harness

-(define script-version "2026-01-23.07") ;UTC
+(define script-version "2023-12-08.14") ;UTC

 ;;; Copyright © 2015, 2016 Mathieu Lirzin <mthl@gnu.org>
 ;;; Copyright © 2021 Maxim Cournoyer <maxim@guixotic.coop>
@@ -151,7 +151,7 @@ cases based on their names."
                (and show-duration? time-elapsed-seconds)))

      (unless (and errors-only? (not (test-failed? runner)))
-        (format #t "test-name: ~A~%" (test-runner-test-name runner))
+        (format #t "test-name: ~A~%" (result 'test-name))
        (format #t "location: ~A~%"
                (string-append (result 'source-file) ":"
                               (number->string (result 'source-line))))
@@ -2,7 +2,7 @@
 # Process this file with autoconf to produce a configure script.
 #
 # GNU Guix --- Functional package management for GNU
-# Copyright © 2012-2021, 2022-2023, 2025 Ludovic Courtès <ludo@gnu.org>
+# Copyright © 2012-2021, 2022-2023 Ludovic Courtès <ludo@gnu.org>
 # Copyright © 2013, 2016 Mark H Weaver <mhw@netris.org>
 # Copyright © 2014-2016 Alex Kost <alezost@gmail.com>
 # Copyright © 2014-2016 David Thompson <davet@gnu.org>
@@ -130,8 +130,7 @@ if test "x$GUILD" = "x"; then
 fi

 dnl (guix ui), notably, requires 'default-optimization-level' added in 3.0.3.
-dnl (guix serialization) requires 'bytevector-slice' added in 3.0.9.
-PKG_CHECK_MODULES([GUILE], [guile-3.0 >= 3.0.9])
+PKG_CHECK_MODULES([GUILE], [guile-3.0 >= 3.0.3])

 dnl Get CFLAGS and LDFLAGS for libguile.
 GUILE_FLAGS
@@ -199,12 +198,6 @@ if test "x$have_guile_lzlib" != "xyes"; then
  AC_MSG_ERROR([Guile-lzlib is missing; please install it.])
 fi

-dnl Check for Guile-semver.
-GUILE_MODULE_AVAILABLE([have_guile_semver], [(semver)])
-if test "x$have_guile_semver" != "xyes"; then
-  AC_MSG_ERROR([Guile-semver is missing; please install it.])
-fi
-
 dnl Check for Guile-Avahi.
 GUILE_MODULE_AVAILABLE([have_guile_avahi], [(avahi)])
 AM_CONDITIONAL([HAVE_GUILE_AVAHI],
@@ -82,7 +82,7 @@

 (define %latest-guix-version
  ;; Latest released version.
-  "1.5.0")
+  "1.4.0")

 (define (texinfo-manual-images source)
  "Return a directory containing all the images used by the user manual, taken
@@ -777,8 +777,7 @@ in SOURCE."
              (define version-links
                (list (menu-item #$latest-version
                                 (string-append
-                                  "/manual/" #$latest-version
-                                  "/" language
+                                  "/manual/" language
                                  (if split-node? "/html_node" "")))
                      (menu-item "development"
                                 (string-append
@@ -943,8 +942,7 @@ makeinfo OPTIONS."
                      (let* ((texi (language->texi-file-name language))
                             (opts `("--html"
                                     "-c" ,(string-append "TOP_NODE_UP_URL=/manual/"
-                                                          #$%latest-guix-version
-                                                          "/" language)
+                                                         language)
                                     #$@options
                                     ,texi)))
                        (format #t "building HTML manual for language '~a'...~%"
@@ -66,7 +66,7 @@ GNU Guix depends on the following packages:

@itemize
@item @url{https://gnu.org/software/guile/, GNU Guile}, version 3.0.x,
-version 3.0.9 or later;
+version 3.0.3 or later;
@item @url{https://notabug.org/cwebber/guile-gcrypt, Guile-Gcrypt}, version
 0.1.0 or later;
@item
@@ -142,7 +142,6 @@ Guix Consensus Document 003}.}:

@example
 git clone https://git.guix.gnu.org/guix.git
-cd guix
@end example

@cindex authentication, of a Guix checkout
@@ -182,7 +181,6 @@ guix shell -D guix -CPW
 or even, from within a Git worktree for Guix:

@example
-echo $(pwd) >> ~/.config/guix/shell-authorized-directories
 guix shell -CPW
@end example

@@ -190,10 +188,6 @@ If @option{-C} (short for @option{--container}) is not supported on your
 system, try @command{--pure} instead of @option{-CPW}.
@xref{Invoking guix shell}, for more information on that command.

-Most of the test suite runs without an internet connection. The @option{-N}
-(short for @option{--network}) can be added to the @code{guix shell} command
-to run the tests that require internet access.
-
 If you are unable to use Guix when building Guix from a checkout, the
 following are the required packages in addition to those mentioned in the
 installation instructions (@pxref{Requirements}).
@@ -207,11 +201,11 @@ installation instructions (@pxref{Requirements}).
@item @url{https://www.gnu.org/software/help2man/, GNU Help2man (optional)}.
@end itemize

-On Guix, other development tools, like @code{strace}, can be included by
-giving them as extra arguments to @command{guix shell}:
+On Guix, extra dependencies can be added by instead running @command{guix
+shell}:

@example
-guix shell -D guix -CPW strace
+guix shell -D guix help2man git strace --pure
@end example

 From there you can generate the build system infrastructure
@@ -22,7 +22,7 @@ Copyright @copyright{} 2020 André Batista@*
 Copyright @copyright{} 2020 Christine Lemmer-Webber@*
 Copyright @copyright{} 2021 Joshua Branson@*
 Copyright @copyright{} 2022, 2023 Maxim Cournoyer@*
-Copyright @copyright{} 2023--2026 Ludovic Courtès@*
+Copyright @copyright{} 2023-2025 Ludovic Courtès@*
 Copyright @copyright{} 2023 Thomas Ieong@*
 Copyright @copyright{} 2024 Florian Pelz@*
 Copyright @copyright{} 2025 45mg@*
@@ -1734,8 +1734,8 @@ At this stage, the package @code{cargo-audit} is buildable.

@item
 Finally we'll unbundle the vendored dependencies.  The lockfile importer
-inserts @code{TODO REVIEW:} comments for libraries with high probability
-of bundled dependencies.  @code{cargo-build-system} also performs
+inserts @code{TODO:} comments for libraries with high probability of
+bundled dependencies.  @code{cargo-build-system} also performs
 additional check for binary files in its
@code{check-for-pregenerated-files} phase, which usually indicates
 bundling:
@@ -1909,11 +1909,11 @@ Don't forget to modify all workspace members in @code{(gnu packages
 rust-crates)}:

@lisp
-(define rust-pipewire-0.8.0.fd3d8f7 package:rust-pipewire-0.8.0.fd3d8f7)
-(define rust-pipewire-sys-0.8.0.fd3d8f7 package:rust-pipewire-0.8.0.fd3d8f7)
+(define rust-pipewire-0.8.0.fd3d8f7 rust-pipewire-0.8.0.fd3d8f7)
+(define rust-pipewire-sys-0.8.0.fd3d8f7 rust-pipewire-0.8.0.fd3d8f7)
@dots{}
-(define rust-libspa-0.8.0.fd3d8f7 package:rust-pipewire-0.8.0.fd3d8f7)
-(define rust-libspa-sys-0.8.0.fd3d8f7 package:rust-pipewire-0.8.0.fd3d8f7)
+(define rust-libspa-0.8.0.fd3d8f7 rust-pipewire-0.8.0.fd3d8f7)
+(define rust-libspa-sys-0.8.0.fd3d8f7 rust-pipewire-0.8.0.fd3d8f7)
@end lisp

@node Using Rust Libraries in Other Build Systems
@@ -5958,15 +5958,6 @@ installation instructions (@pxref{Binary Installation,,, guix, GNU Guix
 Reference Manual}).  Thanks to the installation script, this should be
 quick.  Once installation is complete, we need to make some adjustments.

-@quotation Note
-Starting from Guix version 1.5.0, @command{guix-daemon} runs without
-root privileges by default; previously installed systems can also be
-migrated to this ``rootless'' mode (@pxref{Build Environment Setup,,,
-guix, GNU Guix Reference Manual}).  Learn more about this change in a
-@uref{https://hpc.guix.info/blog/2025/03/build-daemon-drops-its-privileges/,
-2025 blog post}.
-@end quotation
-
 Since we want @code{guix-daemon} to be reachable not just from the head
 node but also from the compute nodes, we need to arrange so that it
 listens for connections over TCP/IP.  To do that, we'll edit the systemd
@@ -5981,12 +5972,13 @@ something like this:
@ifnothtml
@example
 ExecStart=/var/guix/profiles/per-user/root/current-guix/bin/guix-daemon \
+    --build-users-group=guixbuild \
    --listen=/var/guix/daemon-socket/socket --listen=0.0.0.0
@end example
@end ifnothtml
@ifhtml
@example
-ExecStart=/var/guix/profiles/per-user/root/current-guix/bin/guix-daemon --listen=/var/guix/daemon-socket/socket --listen=0.0.0.0
+ExecStart=/var/guix/profiles/per-user/root/current-guix/bin/guix-daemon --build-users-group=guixbuild --listen=/var/guix/daemon-socket/socket --listen=0.0.0.0
@end example
@end ifhtml

@@ -6022,51 +6014,32 @@ The @file{/gnu/store} directory can be exported read-only since only
 package}; thus, to allow users to install packages with @code{guix
 package}, this must be read-write.

-@quotation Note
-Although it is rarely used, Guix allows for the creation of profiles in
-non-default locations.  For instance, @code{guix package -p
-~/dev/python-dev -i python} installs Python in a profile reachable from
-the @code{~/dev/python-dev} symlink instead of the default
-@file{~/.guix-profile}.
-
-To make sure that
+Users can create as many profiles as they like in addition to the
+default profile, @file{~/.guix-profile}.  For instance, @code{guix
+package -p ~/dev/python-dev -i python} installs Python in a profile
+reachable from the @code{~/dev/python-dev} symlink.  To make sure that
 this profile is protected from garbage collection---i.e., that Python
 will not be removed from @file{/gnu/store} while this profile exists---,
@emph{home directories should be mounted on the head node} as well so
 that @code{guix-daemon} knows about these non-standard profiles and
 avoids collecting software they refer to.

-@c The following paragraph refers to Guix commit
-@c d12c4452a49b355369636de1dfc766b5bad6437b, which changed
-@c 'time-machine' and 'shell' to store GC roots under /var/guix.
-Doing so is optional though: profiles created by default by
-@command{guix package}, @command{guix pull}, and @command{guix shell}
-are all stored under @file{/var/guix} and thus protected from garbage
-collection.
-@end quotation
-
 It may be a good idea to periodically remove unused bits from
@file{/gnu/store} by running @command{guix gc} (@pxref{Invoking guix
 gc,,, guix, GNU Guix Reference Manual}).  This can be done by adding a
-systemd timer based on the one shipped with Guix:
+crontab entry on the head node:

@example
-cp \
- /var/guix/profiles/per-user/root/current-guix/lib/systemd/system/guix-gc.* \
- /etc/systemd/system
+root@@master# crontab -e
@end example

-Make sure to edit @file{guix-gc.service} and @file{guix-gc.timer} under
-@file{/etc/systemd/system} to adjust the parameters to your need: timer
-frequency, amount of free space, and whether to delete user's old
-generations.  We recommend executing @command{guix gc -F50G} every
-night, which will ensure that at least 50@tie{}GiB are available,
-without deleting user generations.  Once you're satisfied, you can start
-the timer:
+@noindent
+... with something like this:

@example
-systemctl daemon-reload
-systemctl start guix-gc.timer
+# Every day at 5AM, run the garbage collector to make sure
+# at least 10 GB are free on /gnu/store.
+0 5 * * 1  /usr/local/bin/guix gc -F10G
@end example

 We're done with the head node! Let's look at compute nodes now.
@@ -22,7 +22,7 @@
@set SUBSTITUTE-URLS https://@value{SUBSTITUTE-SERVER-1} https://@value{SUBSTITUTE-SERVER-2}

@copying
-Copyright @copyright{} 2012--2026 Ludovic Courtès@*
+Copyright @copyright{} 2012--2025 Ludovic Courtès@*
 Copyright @copyright{} 2013, 2014, 2016, 2024 Andreas Enge@*
 Copyright @copyright{} 2013 Nikita Karetnikov@*
 Copyright @copyright{} 2014, 2015, 2016 Alex Kost@*
@@ -770,43 +770,57 @@ This section only applies to systems without Guix.  Following it for
 existing Guix installations will overwrite important system files.
@end quotation

-The
-@uref{https://guix.gnu.org/guix-install.sh, @file{guix-install.sh}}
-shell script automates the binary installation process.
-Use of @file{guix-install.sh} requires Bash, GnuPG, GNU@tie{}tar, wget,
-and Xz.  On systems where systemd is detected, the tool
-@command{newgidmap} from the @code{uidmap} package is also required.
+Some GNU/Linux distributions, such as openSUSE, Alpine and NixOS provide
+Guix through their own package managers.  The version of Guix may be
+older than @value{VERSION} but you can update it afterwards by running
+@samp{guix pull}.

-To install Guix on top of your GNU/Linux system, run the following
-commands as root:
+We advise system administrators who install Guix, both from the
+installation script or @i{via} the native package manager of their
+foreign distribution, to also regularly read and follow security
+notices, as shown by @command{guix pull}.

+If you are running Parabola, after enabling the pcr (Parabola
+Community Repo) repository, you can install Guix with:
@example
-cd /tmp
-wget https://guix.gnu.org/guix-install.sh
-chmod +x guix-install.sh
-./guix-install.sh
+sudo pacman -S guix
@end example

-When you're done installing Guix, @pxref{Application Setup} for extra
-configuration you might need, and @ref{Getting Started} for your first
-steps!
+For other package managers with a @var{guix} package, you should be able
+to install it like any other package.

-The script goes through the following steps:
+The Guix project also provides a shell script, @file{guix-install.sh},
+which automates the binary installation process without use of a foreign
+distro package
+manager@footnote{@uref{https://guix.gnu.org/guix-install.sh}}.
+Use of @file{guix-install.sh} requires Bash, GnuPG, GNU@tie{}tar, wget,
+and Xz.  On systems where @code{systemd} is detected, the tool
+@code{newgidmap} from the @code{uidmap} package is also required.

-@enumerate
-@item
-Downloading the binary tarball from
-@indicateurl{@value{BASE-URL}/guix-binary-@value{VERSION}.x86_64-linux.tar.xz}
-(where @code{x86_64-linux} can be replaced with @code{i686-linux} for an
-@code{i686} (32-bits) machine already running the kernel Linux, and so
-on---@pxref{GNU Distribution}) and extracting it.
-@item
-Setting up the build daemon (@pxref{Setting Up the Daemon}).
-@item
-Making the @command{guix} command available to non-root users.
-@item
-Configuring substitute servers (@pxref{Official Substitute Servers}).
-@end enumerate
+The script guides you through the following:
+
+@itemize
+@item Downloading and extracting the binary tarball
+@item Setting up the build daemon
+@item Making the ‘guix’ command available to non-root users
+@item Configuring substitute servers
+@end itemize
+
+As root, run:
+
+@example
+# cd /tmp
+# wget https://guix.gnu.org/guix-install.sh
+# chmod +x guix-install.sh
+# ./guix-install.sh
+@end example
+
+The script to install Guix is also packaged in Parabola (in the pcr
+repository). You can install and run it with:
+@example
+sudo pacman -S guix-installer
+sudo guix-install.sh
+@end example

@quotation Note
 By default, @file{guix-install.sh} will configure Guix to download
@@ -823,13 +837,17 @@ To use substitutes from @code{@value{SUBSTITUTE-SERVER-1}},
 For example,

@example
-guix archive --authorize < \
-   ~root/.config/guix/current/share/guix/@value{SUBSTITUTE-SERVER-1}.pub
-guix archive --authorize < \
-   ~root/.config/guix/current/share/guix/@value{SUBSTITUTE-SERVER-2}.pub
+# guix archive --authorize < \
+     ~root/.config/guix/current/share/guix/@value{SUBSTITUTE-SERVER-1}.pub
+# guix archive --authorize < \
+     ~root/.config/guix/current/share/guix/@value{SUBSTITUTE-SERVER-2}.pub
@end example
@end quotation

+When you're done installing Guix, @pxref{Application Setup} for extra
+configuration you might need, and @ref{Getting Started} for your first
+steps!
+
@quotation Note
 The binary installation tarball can be (re)produced and verified simply
 by running the following command in the Guix source tree:
@@ -861,16 +879,6 @@ the @option{--uninstall} flag:
 With @option{--uninstall}, the script irreversibly deletes all the Guix
 files, configuration, and services.

-Some GNU/Linux distributions, such as openSUSE, Alpine and NixOS provide
-Guix through their own package managers.  The version of Guix may be
-older than @value{VERSION} but you can update it afterwards by running
-@command{guix pull}.
-
-We advise system administrators who install Guix, both from the
-installation script or @i{via} the native package manager of their
-foreign distribution, to also regularly read and follow security
-notices, as shown by @command{guix pull}.
-
@node Setting Up the Daemon
@section Setting Up the Daemon

@@ -2149,9 +2157,8 @@ systemctl restart guix-daemon.service

 While this works for @file{guix-install.sh}, it will most likely not
 work if you installed Guix through the package manager of another
-distribution (for instance with @command{sudo apt install guix},
-@command{pacman -S guix}, or similar commands)
-because on many distributions @file{guix-daemon.service} will only
+distribution (for instance with sudo apt install guix, pacman -S guix,
+etc) because on many distributions @file{guix-daemon.service} will only
 run the Guix daemon provided by the distribution.

 Waiting for your distribution to provide security fixes sometimes work,
@@ -7901,7 +7908,6 @@ package looks like this:

@lisp
 (define-module (gnu packages hello)
-  #:use-module (guix gexp)
  #:use-module (guix packages)
  #:use-module (guix download)
  #:use-module (guix build-system gnu)
@@ -8731,7 +8737,6 @@ The example below denotes a version of gnu-standards to fetch:
@section Defining Package Variants

@cindex customizing packages
-@cindex package variants
@cindex variants, of packages
 One of the nice things with Guix is that, given a package definition,
 you can easily @emph{derive} variants of that package---for a different
@@ -13576,8 +13581,7 @@ the parsed command-line options.
@node Package Transformation Options
@subsection Package Transformation Options

-@cindex package tranformation
-@cindex package variants, transformation
+@cindex package variants
 Another set of command-line options supported by @command{guix build}
 and also @command{guix package} are @dfn{package transformation
 options}.  These are options that make it possible to define @dfn{package
@@ -13658,37 +13662,6 @@ coarse-grain counterpart of @dfn{function multi-versioning} as
 implemented by the GNU tool chain (@pxref{Function Multiversioning,,,
 gcc, Using the GNU Compiler Collection (GCC)}).

-@cindex GPUs, AMD compilation targets
-@cindex AMD GPUs
-@cindex ROCm/HIP GPU targets
-@vindex amd-gpu-targets
-@anchor{amd-gpu-transformation-option}
-@item --amd-gpu=@var{targets}
-Build relevant packages for the AMD GPUs specified by @var{targets}.
-Only packages with an @code{amd-gpu-targets} property are affected.
-@var{targets} must be a comma-separated list of
-@uref{https://llvm.org/docs/AMDGPUUsage.html#amdgpu-processor-table, AMD
-GPU target identifiers}.  For example, the command below builds the GPU
-code of @code{rocm-bandwidth-test} for AMD Instinct MI250
-(@code{gfx90a}) and for AMD Instinct MI300 (@code{gfx942}):
-
-@example
-guix build --amd-gpu=gfx90a,gfx942 rocm-bandwidth-test
-@end example
-
-To know the identifier(s) of the GPU(s) available on your machine, run:
-
-@example
-guix shell rocminfo -- rocm_agent_enumerator
-@end example
-
-Under the hood, these GPU identifiers are
-passed to Clang's @option{--offload-arch} option.
-
-When @option{--amd-gpu} is omitted, packages are built for a default set
-of GPUs, that we hope covers common needs.  Building for more GPUs
-increases build time significantly and leads to bigger package binaries.
-
@item --with-source=@var{source}
@itemx --with-source=@var{package}=@var{source}
@itemx --with-source=@var{package}@@@var{version}=@var{source}
@@ -14734,50 +14707,6 @@ and generate package expressions for all those packages that are not yet
 in Guix.
@end table

-@item nuget
-@cindex nuget
-@cindex .NET
-Import metadata from @uref{https://www.nuget.org/, NuGet}, the package
-manager for .NET.  Information is taken from the JSON-formatted metadata
-provided through NuGet's v3 API at @code{api.nuget.org} and includes
-most relevant information, including package dependencies.
-There are some caveats, however.  The metadata does not always include
-repository information, in which case the importer attempts to extract
-it from the symbol package (@file{.snupkg}) if available. 
-Additionally, dependencies are grouped by target framework in NuGet,
-but the importer flattens all dependency groups into a single list.
-
-The command below imports metadata for the @code{Avalonia} .NET package:
-
-@example
-guix import nuget Avalonia
-@end example
-
-You can also recursively import all dependencies:
-
-@example
-guix import nuget -r Avalonia
-@end example
-
-@table @code
-@item --archive=@var{repo}
-@itemx -a @var{repo}
-Specify the archive repository.  Currently only @code{nuget} is supported,
-which uses the official NuGet package repository at @code{nuget.org}.
-
-@item --recursive
-@itemx -r
-Traverse the dependency graph of the given upstream package recursively
-and generate package expressions for all those packages that are not yet
-in Guix.
-
-@item --license-prefix=@var{prefix}
-@itemx -p @var{prefix}
-Add a custom prefix to license identifiers in the generated package
-definitions.  This can be useful when license identifiers need to be
-qualified with a module name.
-@end table
-
@item minetest
@cindex minetest
@cindex ContentDB
@@ -15125,8 +15054,8 @@ When @option{--lockfile} is specified, the importer will ignore other options
 and won't output package expressions, instead importing source expressions
 from @var{file}, a @file{Cargo.lock} file.

-@xref{Packaging Rust Crates,,, guix-cookbook, GNU Guix Cookbook}, for
-a packaging workflow utilizing it.
+@xref{Packaging Rust Crates,,, guix-cookbook, GNU Guix Cookbook}, for packaging
+workflow utilizing it.
@end table

@item elm
@@ -24321,58 +24250,6 @@ Whether to enable password-based authentication.
@end table
@end deftp

-@cindex EndleSSH
-@defvar endlessh-service-type
-This is the type for the
-@uref{https://github.com/skeeto/endlessh,EndleSSH} program that runs an
-SSH tar pit. By very slowly sending an SSH banner, this program keeps
-unwanted visitors locked away from the actual SSH daemon.
-
-For example, to specify a service running Endlessh on port @code{2222}, add
-this call to the operating system's @code{services} field:
-
-@lisp
-(service endlessh-service-type
-         (endlessh-configuration
-          (port-number 2222)))
-@end lisp
-@end defvar
-
-@deftp {Data Type} endlessh-configuration
-This data type represents the configuration of an EndleSSH service.
-
-@table @asis
-@item @code{endlessh} (default: @var{endlessh})
-The EndleSSH package to use.
-
-@item @code{port-number} (default: @code{22})
-The TCP port where the daemon waits for incoming connections.
-
-@item @code{log-level} (default: @code{1})
-The log level. @code{0} is quiet, @code{2} is very noisy.
-
-@item @code{syslog-output?} (default: @code{#t})
-Whether to enable syslog output.
-
-@item @code{pid-file} (default: @code{"/var/run/endlessh.pid"})
-File name of the daemon's PID file.
-
-@item @code{message-delay} (default: @code{10000})
-The endless banner is sent one line at a time. This is the delay in
-milliseconds between individual lines.
-
-@item @code{max-banner-length} (default: @code{32})
-The length of each line is randomized. This controls the maximum length
-of each line. Shorter lines may keep clients on for longer if they give
-up after a certain number of bytes.
-
-@item @code{max-clients} (default: @code{4096})
-Maximum number of connections to accept at a time. Connections beyond
-this are not immediately rejected, but will wait in the queue.
-
-@end table
-@end deftp
-
@cindex AutoSSH
@defvar autossh-service-type
 This is the type for the @uref{https://www.harding.motd.ca/autossh,
@@ -24998,6 +24875,7 @@ example the @code{windowmaker} or @code{openbox} packages---preferably
 by adding it to the @code{packages} field of your operating system
 definition (@pxref{operating-system Reference, system-wide packages}).

+@anchor{wayland-gdm}
 GDM also supports Wayland: it can itself use Wayland instead of X11 for
 its user interface, and it can also start Wayland sessions.  Wayland
 support is enabled by default.  To disable it, set @code{wayland?} to
@@ -26510,6 +26388,16 @@ special-purpose system interfaces and programs.  This allows backlight
 adjustment helpers, power management utilities, screen lockers, and
 other integrated functionality to work as expected.

+The desktop environments in Guix use the Xorg display server by
+default.  If you'd like to use the newer display server protocol
+called Wayland, you need to enable Wayland support in GDM
+(@pxref{wayland-gdm}).  Another solution is to use the
+@code{sddm-service} instead of GDM as the graphical login manager.
+You should then select the ``GNOME (Wayland)'' session in SDDM@.
+Alternatively you can also try starting GNOME on Wayland manually from a
+TTY with the command ``XDG_SESSION_TYPE=wayland exec dbus-run-session
+gnome-session``.  Currently only GNOME has support for Wayland.
+
@defvar gnome-desktop-service-type
 This is the type of the service that adds the @uref{https://www.gnome.org,
 GNOME} desktop environment.  Its value is a @code{gnome-desktop-configuration}
@@ -26584,7 +26472,7 @@ The Plasma package to use.
@end deftp

@defvar xfce-desktop-service-type
-This is the type of a service to run the @uref{https://xfce.org/, Xfce}
+This is the type of a service to run the @uref{Xfce, https://xfce.org/}
 desktop environment.  Its value is an @code{xfce-desktop-configuration} object
 (see below).

@@ -31962,12 +31850,12 @@ services:
@subsubheading Jami

@defvar jami-service-type
-The service type for running @uref{https://jami.net/, Jami} as a
-service.  It takes a @code{jami-configuration} object as a value,
-documented below.  This section describes how to configure a Jami server
-that can be used to host video (or audio) conferences, among other uses.
-The following example demonstrates how to specify Jami account archives
-(backups) to be provisioned automatically:
+The service type for running Jami as a service.  It takes a
+@code{jami-configuration} object as a value, documented below.  This
+section describes how to configure a Jami server that can be used to
+host video (or audio) conferences, among other uses.  The following
+example demonstrates how to specify Jami account archives (backups) to
+be provisioned automatically:

@lisp
 (service jami-service-type
@@ -38452,8 +38340,8 @@ evaluated, they are sent to the local Guix daemon.  Cuirass then
 listens to the Guix daemon output to detect the various build events.

@item Using the remote build mechanism.
-The build jobs are not submitted to the local Guix daemon.  Instead, one
-``remote server'' dispatches build requests to the connected ``remote workers'',
+The build jobs are not submitted to the local Guix daemon.  Instead, a
+remote server dispatches build requests to the connect remote workers,
 according to the build priorities.

@end itemize
@@ -43321,91 +43209,6 @@ the @code{joycond-configuration} configuration), so that joycond
 controllers can be detected and used by an unprivileged user.
@end defvar

-@subsubheading Luanti service
-@cindex luanti
-@cindex voxel-based games
-@uref{https://www.luanti.org/en/, Luanti} is a voxel game engine that
-powers many games.  This service is for hosting a Luanti server.  The
-various options can be configured via the @code{luanti-configuration}
-record, documented below:
-
-@c %start of fragment
-
-@deftp {Data Type} luanti-configuration
-Available @code{luanti-configuration} fields are:
-
-@table @asis
-@item @code{luanti} (default: @code{luanti-server}) (type: file-like)
-The Luanti package to use.
-
-@item @code{game} (default: @code{luanti-mineclonia}) (type: file-like)
-The Luanti game package to serve.
-
-@item @code{game-configuration} (type: maybe-file-like)
-A configuration file to use for the selected Luanti game, which
-corresponds to the @file{minetest.conf} file.
-
-@item @code{mods} (type: maybe-list-of-file-likes)
-A list of Luanti mod packages to use.  Note that using mods is
-complicated by the requirements of Luanti to 1) manually enable the mod
-and any of its dependent mods in the @file{world.rt} file of the world
-used and 2) to register the mod names and those of its dependents via a
-@samp{secure.trusted_mods} @code{game-configuration} directive.  Consult
-the example below for more precise directions.
-
-@item @code{log-file} (default: @code{"/var/log/luanti.log"}) (type: maybe-string)
-The log file to log to.  To disable logging, set this to
-@code{%unset-value}.
-
-@item @code{verbose?} (default: @code{#f}) (type: boolean)
-Print more detailed information.
-
-@item @code{port} (default: @code{30000}) (type: port)
-The UDP port the server should listen to.
-
-@item @code{world} (type: maybe-string)
-An existing Luanti world directory to serve.  If omitted, a new world is
-created under the @file{/var/lib/luanti/.minetest/worlds/world}
-directory.  If an absolute file name is provided, it is used directly.
-Otherwise, it is expected to be a directory under
-@file{/var/lib/luanti/.minetest/worlds/}.
-
-@end table
-
-@end deftp
-
-
-@c %end of fragment
-
-Here's the simplest example of a Luanti server, which in its default
-configuration serves the @code{luanti-mineclonia} game.
-
-@lisp
-(service luanti-service-type)
-@end lisp
-
-Here's a slightly more elaborate one, which adds the
-@code{luanti-whitelist} mod.  Embedded are comments explaining extra
-needed steps when using mods.  Failing to do these steps will cause the
-service to fail to start.
-
-@lisp
-(service luanti-service-type
-         (luanti-configuration
-          (game luanti-mineclonia)
-          (game-configuration
-           (plain-file
-            "minetest.conf"
-            ;; lib_chatcmdbuilder is a dependency of the whitelist mod
-            "secure.trusted_mods = whitelist,lib_chatcmdbuilder\n"))
-          ;; The
-          ;; '/var/lib/luanti/.minetest/worlds/world/world.mt'
-          ;; file needs to be hand-edited to add:
-          ;; load_mod_whitelist = true
-          ;; load_mod_lib_chatcmdbuilder = true
-          (mods (list luanti-whitelist))))
-@end lisp
-
@subsubheading The Battle for Wesnoth Service
@cindex wesnothd
@uref{https://wesnoth.org, The Battle for Wesnoth} is a fantasy, turn
@@ -46404,127 +46207,6 @@ Mode for filter.

@c End of auto-generated fail2ban documentation.

-@cindex OpenSnitch
-@subsubheading OpenSnitch Service
-
-@uref{https://github.com/evilsocket/opensnitch, OpenSnitch} is an
-application-level firewall that monitors outbound connections and prompts
-users to allow or deny them on a per-application basis.
-
-@code{opensnitch-service-type} is provided by the @code{(gnu services
-opensnitch)} module.
-
-@defvar opensnitch-service-type
-This is the service type for the OpenSnitch application firewall daemon.
-Its value must be an @code{opensnitch-configuration} record.
-
-Below is an example configuration:
-
-@lisp
-(service opensnitch-service-type)
-@end lisp
-
-This service depends on the @code{networking} service.
-@end defvar
-
-@deftp {Data Type} opensnitch-configuration
-Available @code{opensnitch-configuration} fields are:
-
-@table @asis
-@item @code{opensnitch} (default: @code{opensnitch-daemon}) (type: package)
-The @code{opensnitch-daemon} package to use.
-
-@item @code{server-address} (default: @code{"unix:///tmp/osui.sock"}) (type: string)
-Address for the UI to connect to the daemon.
-
-@item @code{server-log-file} (default: @code{"/var/log/opensnitchd.log"}) (type: string)
-Path to the daemon log file.
-
-@item @code{authentication-type} (default: @code{"simple"}) (type: string)
-Authentication type for UI-daemon communication.
-
-@item @code{tls-ca-cert} (default: @code{""}) (type: string)
-Path to TLS CA certificate.
-
-@item @code{tls-server-cert} (default: @code{""}) (type: string)
-Path to TLS server certificate.
-
-@item @code{tls-client-cert} (default: @code{""}) (type: string)
-Path to TLS client certificate.
-
-@item @code{tls-client-key} (default: @code{""}) (type: string)
-Path to TLS client key.
-
-@item @code{tls-skip-verify?} (default: @code{#f}) (type: boolean)
-Whether to skip TLS verification.
-
-@item @code{tls-client-auth-type} (default: @code{"no-client-cert"}) (type: string)
-TLS client authentication type.
-
-@item @code{default-action} (default: @code{"allow"}) (type: string)
-Default action for connections: @code{"allow"} or @code{"deny"}.
-
-@item @code{default-duration} (default: @code{"once"}) (type: string)
-Default duration for rules: @code{"once"}, @code{"until-restart"},
-@code{"always"}, etc.
-
-@item @code{intercept-unknown?} (default: @code{#f}) (type: boolean)
-Whether to intercept connections from unknown processes.
-
-@item @code{proc-monitor-method} (default: @code{"ebpf"}) (type: string)
-Method for monitoring processes: @code{"ebpf"}, @code{"proc"}, or
-@code{"audit"}.
-
-@item @code{log-level} (default: @code{2}) (type: integer)
-Log level: 0=silent, 1=error, 2=warning, 3=important, 4=debug.
-
-@item @code{log-utc?} (default: @code{#t}) (type: boolean)
-Whether to log timestamps in UTC.
-
-@item @code{log-micro?} (default: @code{#f}) (type: boolean)
-Whether to include microseconds in log timestamps.
-
-@item @code{firewall} (default: @code{"nftables"}) (type: string)
-Firewall backend: @code{"nftables"} or @code{"iptables"}.
-
-@item @code{fw-config-path} (default: @code{"/etc/opensnitchd/system-fw.json"}) (type: string)
-Path to the system firewall configuration file.
-
-@item @code{fw-monitor-interval} (default: @code{"15s"}) (type: string)
-Interval for monitoring firewall rules.
-
-@item @code{fw-queue-bypass?} (default: @code{#t}) (type: boolean)
-Whether to bypass the queue when the daemon is not running.
-
-@item @code{rules-path} (default: @code{"/etc/opensnitchd/rules/"}) (type: string)
-Directory where firewall rules are stored.
-
-@item @code{rules-enable-checksums?} (default: @code{#f}) (type: boolean)
-Whether to enable checksums for rules.
-
-@item @code{ebpf-events-workers} (default: @code{8}) (type: integer)
-Number of eBPF event worker threads.
-
-@item @code{ebpf-queue-events-size} (default: @code{0}) (type: integer)
-Size of the eBPF events queue (0 = default).
-
-@item @code{stats-max-events} (default: @code{250}) (type: integer)
-Maximum number of events to keep in statistics.
-
-@item @code{stats-max-stats} (default: @code{25}) (type: integer)
-Maximum number of statistics entries.
-
-@item @code{stats-workers} (default: @code{6}) (type: integer)
-Number of statistics worker threads.
-
-@item @code{internal-gc-percent} (default: @code{100}) (type: integer)
-Go garbage collector percentage.
-
-@item @code{internal-flush-conns-on-start?} (default: @code{#t}) (type: boolean)
-Whether to flush existing connections on daemon start.
-@end table
-@end deftp
-
@cindex resize-file-system
@subsubheading Resize File System Service

@@ -55394,9 +55076,27 @@ related typesetting systems, taken from the
 Because @TeX{} Live is so huge and because finding one's way in this
 maze is tricky, this section provides some guidance on how to deploy
 the relevant packages to compile @TeX{} and @LaTeX{} documents.
-Guix contains the full @TeX{} Live distribution in a modular setup,
-in which you only install the
+
+@TeX{} Live currently comes in two mutually exclusive flavors in Guix:
+
+@itemize
+@item
+The ``monolithic'' @code{texlive} package: it comes with @emph{every
+single @TeX{} Live package} (roughly 4,200), but it is huge---more than
+4@tie{}GiB for a single package!
+
+@item
+A ``modular'' @TeX{} Live distribution, in which you only install the
 packages you need, whose name is always prefixed with @samp{texlive-}.
+@end itemize
+
+To insist, these two flavors cannot be combined@footnote{No rule
+without exception! As the monolithic @TeX{} Live does not contain the
+@command{biber} executable, it is okay to combine it with
+@code{texlive-biber}, which does.}.  If in the modular setting your
+document does not compile, the solution is not to add the monolithic
+@code{texlive} package, but to add the set of missing packages from the
+modular distribution.

 Building a coherent system that provides all the essential tools and, at
 the same time, satisfies all of its internal dependencies can be
@@ -2,7 +2,7 @@
 # Modified by Ludovic Courtès <ludo@gnu.org> for the GNU Guix manual.
 # Further modified by Tomas Volf <~@wolfsden.cz>.

-htmlxrefversion=2026-01-22.12; # UTC
+htmlxrefversion=2025-11-29.21; # UTC

 # Copyright 2010-2020, 2022 Free Software Foundation, Inc.
 #
@@ -416,7 +416,7 @@ guile-rpc	mono	${GS}/guile-rpc/manual/guile-rpc.html
 guile-rpc	node	${GS}/guile-rpc/manual/html_node/

 GUIX_ROOT = https://guix.gnu.org
-GUIX = ${GUIX_ROOT}/manual/devel
+GUIX = ${GUIX_ROOT}/manual
 guix.de	mono	${GUIX}/de/guix.de.html
 guix.de	node	${GUIX}/de/html_node/
 guix.es	mono	${GUIX}/es/guix.es.html
@@ -5,7 +5,7 @@ include <tunables/guix>

 # There’s no point in confining the guix executable, since it can run
 # any user code and so everything is expected.  We just need to
-# explicitly enable userns for systems with the
+# explicitely enable userns for systems with the
 # kernel.apparmor_restrict_unprivileged_userns sysctl.
 profile guix @{guix_storedir}/{*-guix-command,*-guix-*/bin/guix} flags=(unconfined) {
  userns,
@@ -110,7 +110,6 @@ GNU_URL="https://ftpmirror.gnu.org/gnu/guix/"
 declare -A GPG_SIGNING_KEYS
 GPG_SIGNING_KEYS["civodul"]=3CE464558A84FDC69DB40CFB090B11993D9AEBB5  # ludo
 GPG_SIGNING_KEYS["apteryx"]=27D586A4F8900854329FF09F1260E46482E63562 # maxim
-GPG_SIGNING_KEYS["efraim"]=A28BF40C3E551372662D14F741AAE7DCCA3D8351 # efraim
 PUBLIC_KEYSERVERS="keys.openpgp.org pgpkeys.eu keyserver.ubuntu.com"

 # ------------------------------------------------------------------------------
@@ -778,7 +777,7 @@ sys_create_init_profile()
    cat <<"EOF" > /etc/profile.d/zzz-guix.sh
 # Explicitly initialize XDG base directory variables to ease compatibility
 # with Guix System: see <https://issues.guix.gnu.org/56050#3>.
-export XCURSOR_PATH="${XCURSOR_PATH:-$HOME/.local/share/icons:$HOME/.icons:/usr/local/share/icons:/usr/share/icons}"
+export XCURSOR_PATH="${XCURSOR_PATH:-/usr/local/share/icons:/usr/share/icons}"
 export XDG_DATA_HOME="${XDG_DATA_HOME:-$HOME/.local/share}"
 export XDG_CONFIG_HOME="${XDG_CONFIG_HOME:-$HOME/.config}"
 export XDG_STATE_HOME="${XDG_STATE_HOME:-$HOME/.local/state}"
@@ -794,8 +793,8 @@ export PATH="$GUIX_PROFILE/bin${PATH:+:}$PATH"
 # info and man readers.  When INFOPATH is unset, add a trailing colon so Emacs
 # searches 'Info-default-directory-list'.  When MANPATH is unset, add a
 # trailing colon so the system default search path is used.
-export INFOPATH="$GUIX_PROFILE/share/info:${INFOPATH:-}"
-export MANPATH="$GUIX_PROFILE/share/man:${MANPATH:-}"
+export INFOPATH="$GUIX_PROFILE/share/info:$INFOPATH"
+export MANPATH="$GUIX_PROFILE/share/man:$MANPATH"

 # User's default profile, if it exists
 GUIX_PROFILE="$HOME/.guix-profile"
@@ -68,6 +68,7 @@
  "hexchat"
  "hyprland"
  "icecat"
+  "idris"
  "imagemagick"
  "imapfilter"
  "jami"
@@ -42,58 +42,6 @@
 (channel-news
 (version 0)

- (entry (commit "6d4cb99a15da7f4fd55f956c55f4f4aacfcc7742")
-        (title
-         (en "@code{%desktop-services} now includes GDM on AArch64")
-         (de "@code{%desktop-services} enthält jetzt GDM auf AArch64")
-         (pt "@code{%desktop-services} agora inclui GDM no AArch64"))
-        (body
-         (en "On Guix System in an operating system configuration, your value for the
-@code{services} field is based on @code{%desktop-services} for desktop
-machines.
-
-The @code{%desktop-services} contains a login manager that is
-architecture-dependent.  Previously, GDM has been used on x86_64 and SDDM on
-other architectures.
-
-Now, GDM is used on all 64-bit architectures.  This affects only AArch64 in
-the end, as other 64-bit architectures aren't mature enough to use
-%desktop-services, yet.
-
-In case you're on AArch64 and you've changed the login manager, you will have
-to adapt your config to remove @code{gdm-service-type} instead of
-@code{sddm-service-type}.")
-         (de "Auf Guix System liegen in einer Betriebssystemkonfiguration Ihrem
-Wert des @code{services}-Feldes auf Desktop-Maschinen die
-@code{%desktop-services} zugrunde.
-
-Zu den @code{%desktop-services} gehört eine Anmeldeverwaltung, die sich je nach
-Architektur unterscheidet. Bisher wurde GDM auf x86_64 benutzt und SDDM auf
-anderen Architekturen.
-
-Ab jetzt wird GDM auf allen 64-Bit-Architekturen benutzt. Das betrifft
-letztlich nur AArch64, weil andere 64-Bit-Architecturen bisher noch nicht weit
-genug fortgeschritten sind, um die %desktop-services zu benutzen.
-
-Falls Sie auf AArch64 sind und die Anmeldeverwaltung geändert haben, müssen Sie
-Ihre Konfiguration ändern und dort @code{gdm-service-type} entfernen statt
-@code{sddm-service-type}.")
-         (pt "Em uma configuração de sistema operacional do Guix System, seu
-valor para o campo @code{services} é baseado em @code{%desktop-services} para
-máquinas desktop.
-
-@code{%desktop-services} contém um gerenciador de login dependente de
-arquitetura.  Anteriormente, GDM fora usado em x86_64 e SDDM nas demais.
-
-Agora, GDM é usado em todas as arquiteturas de 64 bits. Esta mudança afeta
-apenas a AArch64 no frigir dos ovos, dado que as demais arquiteturas de 64
-bits não são maduras o bastante para usar @code{%desktop-services}, por
-enquanto.
-
-No caso de você estar em um AArch64 e ter modificado o gerenciador de login,
-você terá que adaptar sua configuração para remover @code{gdm-service-type} em
-vez de @code{sddm-service-type}.")))
-
 (entry (commit "d3b79beaa806452dceaffb8b211b69dc4c346aba")
        (title
         (en "Linux-libre 5.4 no longer supported")
@@ -92,7 +92,7 @@ exec $pre_inst_env_maybe guix repl -- "$0" "$@"
  (email   person-email)
  (account person-codeberg-account))

-(define (person name email account)
+(define* (person name #:optional email account)
  (make-person name email account))

 (define* (team id #:key name description (members '())
@@ -630,7 +630,6 @@ of Rebar and Mix build systems and Hex.pm importer."
        #:name "Electronics team"
        #:description "Electronics and hardware related packages."
        #:scope (list "gnu/packages/electronics.scm"
-                      "gnu/packages/hdl.scm"
                      "gnu/packages/libftdi.scm"
                      "gnu/packages/engineering.scm"
                      "gnu/packages/flashing-tools.scm")))
@@ -667,8 +666,6 @@ ecosystem."
                      "gnu/packages/luanti.scm"
                      "gnu/packages/esolangs.scm" ; granted, rather niche
                      "gnu/packages/motti.scm"
-                      "gnu/services/games.scm"
-                      "gnu/tests/games.scm"
                      "guix/build/luanti-build-system.scm")))

 (define-team gnome
@@ -742,8 +739,6 @@ the haskell-build-system."
        #:description "High-performance computing (HPC) related packages."
        #:scope (list "gnu/packages/mpi.scm"
                      "gnu/packages/oneapi.scm"
-                      "gnu/packages/opencl.scm"
-                      "gnu/packages/parallel.scm"
                      "gnu/packages/rocm.scm"
                      "gnu/packages/sycl.scm"
                      "gnu/packages/tbb.scm"
@@ -848,12 +843,6 @@ asdf-build-system."
        #:description "LXQt desktop environment."
        #:scope (list "gnu/packages/lxqt.scm")))

-(define-team mate
-  (team 'mate
-        #:name "MATE team"
-        #:description "MATE desktop environment"
-        #:scope (list "gnu/packages/mate.scm")))
-
 (define-team mentors
  (team 'mentors
        #:name "Mentors"
@@ -963,7 +952,7 @@ release."
 (define-team ruby
  (team 'ruby
        #:name "Ruby team"
-        #:scope (list (make-regexp* "^gnu/packages/(ruby)(-.+|)\\.scm$")
+        #:scope (list "gnu/packages/ruby.scm"
                      "guix/build/ruby-build-system.scm"
                      "guix/build-system/ruby.scm"
                      "guix/import/gem.scm"
@@ -1209,6 +1198,10 @@ the \"texlive\" importer."
                       "jpoiret")
  installer)

+(define-member (person "("
+                       "paren@disroot.org")
+  )
+
 (define-member (person "Simon Tournier"
                       "zimon.toutoune@gmail.com"
                       "zimoun")
@@ -1269,11 +1262,19 @@ the \"texlive\" importer."
                       "Hellseher")
  go julia python science sysadmin)

+(define-member (person "Vivien Kraus"
+                       "vivien@planete-kraus.eu")
+  gnome)
+
 (define-member (person "Mark H Weaver"
                       "mhw@netris.org"
                       "mhw")
  mozilla)

+(define-member (person "Adam Faiz"
+                       "adam.faiz@disroot.org")
+  games)
+
 (define-member (person "Laurent Gatto"
                       "lgatto@protonmail.ch"
                       "lgatto")
@@ -1317,7 +1318,7 @@ the \"texlive\" importer."
 (define-member (person "Cayetano Santos"
                       "csantosb@inventati.org"
                       "csantosb")
-  ai emacs electronics hpc crypto reproduciblebuilds)
+  ai emacs electronics hpc crypto)

 (define-member (person "Greg Hogan"
                       "code@greghogan.com"
@@ -1338,6 +1339,10 @@ the \"texlive\" importer."
                       "Ashvith")
  games go javascript sysadmin xfce)

+(define-member (person "Trevor Richards"
+                       "trev@trevdev.ca")
+  lisp emacs)
+
 (define-member (person "Konrad Hinsen"
                       "guix@khinsen.fastmail.net"
                       "khinsen")
@@ -1406,22 +1411,13 @@ the \"texlive\" importer."
 (define-member (person "Nguyễn Gia Phong"
                       "cnx@loang.net"
                       "cnx")
-  python sysadmin)
+  python)

 (define-member (person "Lilah Tascheter"
                       "lilah@lunabee.space"
                       "tinystar")
  hare)

-(define-member (person "FuncProgLinux"
-                       "softwarelibre@urutau-ltd.org"
-                       "FuncProgLinux")
-  mate)
-
-(define-member (person "Reza Housseini"
-                       "reza@housseini.me"
-                       "rhou")
-  python science c++)

 (define (find-team name)
  (or (hash-ref %teams (string->symbol name))
@@ -1,34 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2025 FuncProgLinux <softwarelibre@urutau-ltd.org>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
-
-(use-modules (guix packages)
-             (guix profiles)
-             (gnu packages mate)
-             (ice-9 match)
-             (srfi srfi-1))
-
-(define (propagated-inputs package)
-  (map
-   (match-lambda
-     ((_ (? package? pkg)) pkg)
-     ((_ (? package? pkg) output) (list pkg output)))
-   (package-propagated-inputs package)))
-
-(packages->manifest
- (append-map propagated-inputs
-             (list mate)))
@@ -187,7 +187,7 @@ configuration.scm."
            (package-arguments guix)))))

 ;; NOTE: Normally, we would use (current-guix), along with url
-;; overridden to the upstream repository to not leak our local checkout.
+;; overriden to the upstream repository to not leak our local checkout.
 ;; But currently, the (current-guix) derivation has to be computed through
 ;; QEMU for systems other than your host system. This takes a lot of time,
 ;; it takes at least half an hour to get the derivations.
@@ -287,7 +287,6 @@ provenance."
             (image
               (inherit base-image)
               (volatile-root? #f)
-               (size (* 20 (expt 1024 3))) ; 20 GiB to have spare space
               (name (string->symbol name))))))))

 (define* (guix-source-tarball)
@@ -22,7 +22,7 @@
  #:use-module (guix download)
  #:use-module (guix git-download)
  #:use-module (guix build-system cargo)
-  #:use-module ((gnu packages rust-sources) #:prefix package:)
+  #:use-module (gnu packages rust-sources)
  #:export (lookup-cargo-inputs))

 ;;;
@@ -29,7 +29,7 @@
 ;;; Code:

 (define %artwork-repository
-  (let ((commit "08259679a0faef63e3ba169df5b937d836bd9262"))
+  (let ((commit "4c7f2ce6428a63e202cd2a9474a06f68a946934d"))
    (origin
      (method git-fetch)
      (uri (git-reference
@@ -39,6 +39,6 @@
                                "-checkout"))
      (sha256
       (base32
-        "0anryix0y8w9brksiaz39r8c10vdd0fp4h96b9f3m4aw0xpv8xlf")))))
+        "1rl569759q9wm1dxn7nkq3873d2k92giic7aa6jwzwr3n16prc7y")))))

 ;;; artwork.scm ends here
@@ -2,7 +2,7 @@
 ;;; Copyright © 2017 David Craven <david@craven.ch>
 ;;; Copyright © 2017, 2020, 2022 Mathieu Othacehe <othacehe@gnu.org>
 ;;; Copyright © 2017 Leo Famulari <leo@famulari.name>
-;;; Copyright © 2019, 2021, 2023, 2025 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2019, 2021, 2023 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2022 Josselin Poiret <dev@jpoiret.xyz>
 ;;; Copyright © 2022 Reza Alizadeh Majd <r.majd@pantherx.org>
@@ -26,8 +26,7 @@
 (define-module (gnu bootloader)
  #:use-module (gnu system file-systems)
  #:use-module (gnu system uuid)
-  #:autoload   (guix discovery) (fold-module-public-variables)
-  #:autoload   (guix describe) (modules-from-current-profile)
+  #:use-module (guix discovery)
  #:use-module (guix gexp)
  #:use-module (guix profiles)
  #:use-module (guix records)
@@ -306,8 +305,10 @@ instead~%")))

 (define (bootloader-modules)
  "Return the list of bootloader modules."
-  (modules-from-current-profile "gnu/bootloader"
-                                #:warn warn-about-load-error))
+  (all-modules (map (lambda (entry)
+                      `(,entry . "gnu/bootloader"))
+                    %load-path)
+               #:warn warn-about-load-error))

 (define %bootloaders
  ;; The list of publically-known bootloaders.
@@ -8,7 +8,6 @@
 ;;; Copyright © 2023-2024 Herman Rimm <herman@rimm.ee>
 ;;; Copyright © 2024 Zheng Junjie <873216071@qq.com>
 ;;; Copyright © 2025 dan <i@dan.games>
-;;; Copyright © 2026 Artyom V. Poptsov <poptsov.artyom@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -65,12 +64,7 @@
            ((? string?)
             (list #~(install-file (string-append bootloader #$file)
                                   install-dir)))
-            ((? file-like?)
-             (list #~(mkdir-p install-dir)
-                   #~(copy-file #$file
-                                (string-append install-dir
-                                               "/"
-                                               #$(plain-file-name file)))))
+            ((? file-like?) (list #~(install-file #$file install-dir)))
            (#f '()))))
    #~(lambda (bootloader device mount-point)
        (let ((install-dir (string-append mount-point "/boot")))
@@ -138,12 +132,7 @@ is BLOCK-SIZE * COUNT, or FILE size if COUNT is not given."
    ;; starfive_visionfive2.dtb.  We cannot guarantee that users will
    ;; update this U-Boot, so set the FDT explicitly.
    (plain-file "uEnv.txt"
-                (string-join
-                 (list
-                  "boot_targets=mmc1 nvme0 mmc0 dhcp"
-                  "bootcmd_mmc1=bootflow scan"
-                  "fdtfile=starfive/jh7110-starfive-visionfive-2-v1.3b.dtb")
-                 "\n"))))
+      "fdtfile=starfive/jh7110-starfive-visionfive-2-v1.3b.dtb~%")))


 ;;;
@@ -83,8 +83,7 @@ turn doesn't take any constant overhead into account, force a 1-MiB minimum."
        (label (partition-label partition))
        (uuid (partition-uuid partition)))
    (apply invoke
-           `("unshare" "--map-root-user" "mkfs.btrfs"
-             "-r" ,root
+           `("fakeroot" "mkfs.btrfs" "-r" ,root
             "-L" ,label
             ,@(if uuid
                   `("-U" ,(uuid->string uuid))
@@ -46,26 +46,7 @@
            make-static-device-nodes
            configure-qemu-networking

-            boot-system
-
-            linux-console
-
-            linux-console?
-            linux-console-device
-            linux-console-can-read?
-            linux-console-can-write?
-            linux-console-can-unblank?
-            linux-console-enabled?
-            linux-console-preferred?
-            linux-console-primary?
-            linux-console-printk?
-            linux-console-braille?
-            linux-console-safe-when-cpu-offline?
-            linux-console-major
-            linux-console-minor
-            linux-console-virtual?
-
-            read-linux-consoles))
+            boot-system))

 ;;; Commentary:
 ;;;
@@ -694,56 +675,4 @@ the root file system...\n" root-delay)
              (start-repl)))))
    #:on-error on-error))

-(define-record-type <linux-console>
-  (make-linux-console device can-read? can-write? can-unblank?
-                      enabled? preferred? primary? printk? braille?
-                      safe-when-cpu-offline? major minor virtual?)
-  linux-console?
-  (device linux-console-device)
-  (can-read? linux-console-can-read?)
-  (can-write? linux-console-can-write?)
-  (can-unblank? linux-console-can-unblank?)
-  (enabled? linux-console-enabled?)
-  (preferred? linux-console-preferred?)
-  (primary? linux-console-primary?)
-  (printk? linux-console-printk?)
-  (braille? linux-console-braille?)
-  (safe-when-cpu-offline? linux-console-safe-when-cpu-offline?)
-  (major linux-console-major)
-  (minor linux-console-minor)
-  (virtual? linux-console-virtual?))
-
-(define* (read-linux-consoles #:optional (consoles-file "/proc/consoles"))
-  "Parses CONSOLES-FILE and returns a list of <linux-console> records."
-  (if (not (file-exists? consoles-file))
-      '()
-      (with-input-from-file consoles-file
-        (lambda ()
-          (let ((line-regex (make-regexp
-                             "^([^ ]+)[ ]+(.+)[ ]+([0-9]+):([0-9]+)$"))
-                (virt-regex (make-regexp "^tty[0-9]+$")))
-            (let loop ((line (read-line))
-                       (results '()))
-              (cond
-               ((eof-object? line)
-                (reverse results))
-               ((regexp-exec line-regex line)
-                => (lambda (m)
-                     (let* ((dev      (match:substring m 1))
-                            (flags    (match:substring m 2))
-                            (major    (string->number (match:substring m 3)))
-                            (minor    (string->number (match:substring m 4)))
-                            (virtual? (regexp-exec virt-regex dev))
-                            (has?     (lambda (c)
-                                      (string-any (lambda (f) (char=? f c)) flags))))
-                       (loop (read-line)
-                             (cons (make-linux-console
-                                    dev
-                                    (has? #\R) (has? #\W) (has? #\U) (has? #\E)
-                                    (has? #\C) (has? #\B) (has? #\p) (has? #\b)
-                                    (has? #\a)
-                                    major minor virtual?)
-                                   results)))))
-               (else (loop (read-line) results)))))))))
-
 ;;; linux-boot.scm ends here
@@ -129,6 +129,9 @@
 (define (list-of-string-ish? lst)
  (every string-ish? lst))

+(define (list-of-packages? lst)
+  (every package? lst))
+
 (define (bar-position? p)
  (member p '(top bottom)))

@@ -1,7 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2018, 2020 Mathieu Othacehe <m.othacehe@gmail.com>
 ;;; Copyright © 2019, 2020, 2022 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2024,2026 Janneke Nieuwenhuizen <janneke@gnu.org>
+;;; Copyright © 2024 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -168,10 +168,8 @@ or #f.  Return #t on success and #f on failure."
                            (const '())))
         (install-command (append `( "guix" "system" "init"
                                     "--fallback"
-                                     ,@(if (%current-target-system)
-                                           `(,(string-append
-                                               "--target="
-                                               (%current-target-system)))
+                                     ,@(if (target-hurd?)
+                                           '("--target=i586-pc-gnu")
                                           '()))
                                  options
                                  (list (%installer-configuration-file)
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2024, 2026 Janneke Nieuwenhuizen <janneke@gnu.org>
+;;; Copyright © 2024 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -27,8 +27,7 @@
  str)

 (define (kernel->configuration kernel dry-run?)
-  (if (and (string? kernel)
-           (string-prefix? "Hurd" kernel))
+  (if (equal? kernel "Hurd")
      `((kernel %hurd-default-operating-system-kernel)
        ,(comment (G_ ";; \"noide\" disables the gnumach IDE driver, enabling rumpdisk.\n"))
        (kernel-arguments '("noide"))
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2024, 2026 Janneke Nieuwenhuizen <janneke@gnu.org>
+;;; Copyright © 2024 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -23,48 +23,23 @@
  #:export (run-kernel-page))

 (define (run-kernel-page)
-  ;; TRANSLATORS: "Hurd" is a proper noun and must not be translated.
-  (let* ((hurd-x86 (G_ "Hurd 32-bit (experimental)"))
-         (hurd-x86_64 (G_ "Hurd 64-bit (highly experimental!)"))
-         (linux-libre "Linux Libre")
-         (kernels (parameterize ((%current-target-system #f))
-                    `(,linux-libre
-                      ,@(cond ((target-x86-64?)
-                               (list hurd-x86 hurd-x86_64))
-                              ((target-x86?)
-                               (list hurd-x86))
-                              (else
-                               '())))))
-         (default (cond ((equal? (%current-target-system) "i586-pc-gnu")
-                         hurd-x86)
-                        ((equal? (%current-target-system) "x86_64-pc-gnu")
-                         hurd-x86_64)
-                        (else
-                         linux-libre)))
+  (let* ((kernels `(,@(if (target-x86?) '("Hurd") '())
+                    "Linux Libre"))
         (result
          (run-listbox-selection-page
           #:title (G_ "Kernel")
           #:info-text
-           ;; TRANSLATORS: "Hurd" is a proper noun and must not be translated.
-           ;; TRANSLATORS: "Linux Libre" is a literal and must not be translated.
           (G_ "Please select a kernel.  When in doubt, choose \"Linux Libre\".
-
 The Hurd is offered as a technology preview and development aid; many packages \
-are not yet available in Guix, such as a desktop environment or even a \
-windowing system (X, Wayland).")
+are not yet available in Guix, such as a desktop environment or even a windowing \
+system (X, Wayland).")
           #:listbox-items kernels
           #:listbox-item->text identity
-           #:listbox-default-item default
-           #:sort-listbox-items? #f               ;keep Linux first
+           #:listbox-default-item "Linux Libre"
           #:button-text (G_ "Back")
           #:button-callback-procedure
           (lambda _
             (abort-to-prompt 'installer-step 'abort)))))
-    (let ((target (cond ((equal? result hurd-x86)
-                         "i586-pc-gnu")
-                        ((equal? result hurd-x86_64)
-                         "x86_64-pc-gnu")
-                        (else
-                         #f))))
-      (%current-target-system target))
+    (when (equal? result "Hurd")
+      (%current-target-system "i586-pc-gnu"))
    result))
@@ -27,7 +27,6 @@
  #:use-module (guix i18n)
  #:use-module (srfi srfi-1)
  #:use-module (srfi srfi-11)
-  #:use-module (srfi srfi-26)
  #:use-module (srfi srfi-34)
  #:use-module (srfi srfi-35)
  #:use-module (ice-9 match)
@@ -113,24 +112,20 @@ network devices were found. Do you want to continue anyway?"))
             full-value
             (+ value 1)))))))

-(define* (url-alive? url #:key (ensure-ok-status? #f))
+(define (url-alive? url)
  (false-if-exception
-   (let ((response (http-request url)))
-     (or (not ensure-ok-status?)
-         (= (response-code response)
-            200)))))
+   (begin
+     (http-request url)
+     #t)))

-(define* (common-urls-alive? urls #:key (ensure-ok-status? #f))
-  "Return #t if at least some of the given URLS are alive,
-meaning that they do respond to a HTTP request. If ENSURE-OK-STATUS? is
-#t, return #t only if the code is 200."
+(define (common-urls-alive? urls)
  (dynamic-wind
    (lambda ()
      (sigaction SIGALRM
        (lambda _ #f))
      (alarm 3))
    (lambda ()
-      (any (cut url-alive? <> #:ensure-ok-status? ensure-ok-status?)
+      (any url-alive?
           urls))
    (lambda ()
      (alarm 0))))
@@ -145,9 +140,7 @@ FULL-VALUE tentatives, spaced by 1 second."
               "https://bordeaux.guix.gnu.org"
               "https://ci.guix.gnu.org"
               "https://guix.gnu.org"
-               "https://gnu.org")
-              ;; Any HTTP response means the users is online.
-              #:ensure-ok-status? #f))
+               "https://gnu.org")))
        (file-exists? "/tmp/installer-assume-online")))

  (let* ((full-value 5))
@@ -180,8 +173,7 @@ Do you want to continue anyway?"))
     (common-urls-alive?
      (list
       "https://bordeaux.guix.gnu.org/nix-cache-info"
-       "https://ci.guix.gnu.org/nix-cache-info")
-      #:ensure-ok-status? #t)))
+       "https://ci.guix.gnu.org/nix-cache-info"))))

  (let* ((full-value 5))
    (run-scale-page
@@ -108,23 +108,20 @@ all data on disk will be lost, are you sure you want to proceed?") item)

 (define (run-label-page button-text button-callback)
  "Run a page asking the user to select a partition table label."
-        ;; Force the GPT label if UEFI is supported.
-  (cond ((efi-installation?)
-         ((run-label-confirmation-page button-callback) "gpt"))
-        ;; Force the MSDOS label on Hurd.
-        ((target-hurd?)
-         ((run-label-confirmation-page button-callback) "msdos"))
-        (else (run-listbox-selection-page
-               #:info-text (G_ "Select a new partition table type. \
+  ;; Force the GPT label if UEFI is supported.
+  (if (efi-installation?)
+      ((run-label-confirmation-page button-callback) "gpt")
+      (run-listbox-selection-page
+       #:info-text (G_ "Select a new partition table type. \
 Be careful, all data on the disk will be lost.")
-               #:title (G_ "Partition table")
-               #:listbox-items '("msdos" "gpt")
-               #:listbox-default-item (if (target-hurd?) "msdos" "gpt")
-               #:listbox-item->text identity
-               #:listbox-callback-procedure
-               (run-label-confirmation-page button-callback)
-               #:button-text button-text
-               #:button-callback-procedure button-callback))))
+       #:title (G_ "Partition table")
+       #:listbox-items '("msdos" "gpt")
+       #:listbox-default-item (if (target-hurd?) "msdos" "gpt")
+       #:listbox-item->text identity
+       #:listbox-callback-procedure
+       (run-label-confirmation-page button-callback)
+       #:button-text button-text
+       #:button-callback-procedure button-callback)))

 (define (run-type-page partition)
  "Run a page asking the user to select a partition type."
@@ -36,9 +36,11 @@
 environments."
  (let ((items (filter desktop-system-service? (%system-services))))
    (run-checkbox-tree-page
-     #:info-text (G_ "Please select the desktop environment(s) you wish to \
+     #:info-text (if (target-hurd?)
+                     (G_ "Currently, none of these is available for the Hurd.")
+                     (G_ "Please select the desktop environment(s) you wish to \
 install.  If you select multiple desktop environments here, you will be able \
-to choose from them later when you log in.")
+to choose from them later when you log in."))
     #:title (G_ "Desktop environment")
     #:items items
     #:selection (map system-service-recommended? items)
@@ -48,16 +50,6 @@ to choose from them later when you log in.")
     (lambda ()
       (abort-to-prompt 'installer-step 'abort)))))

-;; FIXME: all platforms should support %desktop-services and some of the
-;; offered desktop environments. Instead of globally disabling the desktop
-;; page, disable only non-working desktop environments.
-(define (run-desktop-environments-cbt-page/maybe)
-  "Run page with desktop environments, as long as the user is on
-a system that supports them."
-  (if (or (target-hurd?) (target-x86-32?))
-      '()
-      (run-desktop-environments-cbt-page)))
-
 (define (run-networking-cbt-page)
  "Run a page allowing the user to select networking services."
  (let ((items (filter (lambda (service)
@@ -139,7 +131,7 @@ client may be enough for a server.")
       (abort-to-prompt 'installer-step 'abort)))))

 (define (run-services-page)
-  (let ((desktop (run-desktop-environments-cbt-page/maybe)))
+  (let ((desktop (run-desktop-environments-cbt-page)))
    ;; When the user did not select any desktop services, and thus didn't get
    ;; '%desktop-services', offer network management services.
    (append desktop
@@ -195,21 +195,8 @@
 (define (system-services->configuration services)
  "Return the configuration field for SERVICES."
  (let* ((snippets (append-map system-service-snippet services))
+         (packages (append-map system-service-packages services))
         (desktop? (find desktop-system-service? services))
-         (packages
-          (append (append-map system-service-packages services)
-                  (if desktop?
-                      (cons (comment (G_ ";; Fonts to cover all languages.\n"))
-                            (map (lambda (package)
-                                   `(specification->package ,package))
-                                 '("font-google-noto"
-                                   "font-google-noto-emoji"
-                                   ;; FIXME: Selection of fonts depends on the
-                                   ;; locale.  Use a monospaced CJK font with
-                                   ;; latin letters before there's proper fix.
-                                   ;; See <https://codeberg.org/guix/guix/pulls/5654#issuecomment-9928509>
-                                   "font-sarasa-gothic")))
-                      '())))
         (base     (if desktop?
                       (if (target-hurd?)
                           '%desktop-services/hurd
@@ -1,5 +1,5 @@
 # GNU Guix --- Functional package management for GNU
-# Copyright © 2012-2026 Ludovic Courtès <ludo@gnu.org>
+# Copyright © 2012-2025 Ludovic Courtès <ludo@gnu.org>
 # Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2022, 2023, 2024, 2025 Andreas Enge <andreas@enge.fr>
 # Copyright © 2016 Mathieu Lirzin <mthl@gnu.org>
 # Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021 Mark H Weaver <mhw@netris.org>
@@ -19,7 +19,7 @@
 # Copyright © 2018 Amirouche Boubekki <amirouche@hypermove.net>
 # Copyright © 2018, 2019, 2020, 2021, 2022, 2024, 2025 Oleg Pykhalov <go.wigust@gmail.com>
 # Copyright © 2018 Stefan Stefanović <stefanx2ovic@gmail.com>
-# Copyright © 2018, 2020-2026 Maxim Cournoyer <maxim@guixotic.coop>
+# Copyright © 2018, 2020-2025 Maxim Cournoyer <maxim@guixotic.coop>
 # Copyright © 2019, 2020, 2021, 2022, 2024 Guillaume Le Vaillant <glv@posteo.net>
 # Copyright © 2019, 2020 John Soo <jsoo1@asu.edu>
 # Copyright © 2019 Jonathan Brielmaier <jonathan.brielmaier@web.de>
@@ -212,6 +212,7 @@ GNU_SYSTEM_MODULES =				\
  %D%/packages/connman.scm			\
  %D%/packages/containers.scm			\
  %D%/packages/convmv.scm			\
+  %D%/packages/cook.scm				\
  %D%/packages/coq.scm				\
  %D%/packages/cpio.scm				\
  %D%/packages/cpp.scm 				\
@@ -303,7 +304,6 @@ GNU_SYSTEM_MODULES =				\
  %D%/packages/freeipmi.scm			\
  %D%/packages/ftp.scm				\
  %D%/packages/fribidi.scm			\
-  %D%/packages/fusion.scm			\
  %D%/packages/gambas.scm			\
  %D%/packages/game-development.scm		\
  %D%/packages/games.scm			\
@@ -343,6 +343,7 @@ GNU_SYSTEM_MODULES =				\
  %D%/packages/gperf.scm			\
  %D%/packages/gpodder.scm			\
  %D%/packages/gps.scm				\
+  %D%/packages/graal.scm			\
  %D%/packages/graph.scm			\
  %D%/packages/graphics.scm			\
  %D%/packages/graphviz.scm			\
@@ -367,7 +368,6 @@ GNU_SYSTEM_MODULES =				\
  %D%/packages/haskell-web.scm			\
  %D%/packages/haskell-xyz.scm			\
  %D%/packages/haxe.scm				\
-  %D%/packages/hdl.scm				\
  %D%/packages/heads.scm			\
  %D%/packages/hexedit.scm			\
  %D%/packages/high-availability.scm			\
@@ -377,6 +377,7 @@ GNU_SYSTEM_MODULES =				\
  %D%/packages/i2p.scm				\
  %D%/packages/ibus.scm				\
  %D%/packages/icu4c.scm			\
+  %D%/packages/idris.scm			\
  %D%/packages/idutils.scm			\
  %D%/packages/image.scm			\
  %D%/packages/image-processing.scm	\
@@ -759,7 +760,6 @@ GNU_SYSTEM_MODULES =				\
  %D%/services/networking.scm			\
  %D%/services/nix.scm				\
  %D%/services/nfs.scm			\
-  %D%/services/opensnitch.scm			\
  %D%/services/pam-mount.scm			\
  %D%/services/power.scm			\
  %D%/services/science.scm			\
@@ -971,6 +971,11 @@ dist_patch_DATA =						\
  %D%/packages/patches/adb-add-libraries.patch			\
  %D%/packages/patches/adb-libssl_11-compatibility.patch	\
  %D%/packages/patches/accountsservice-extensions.patch		\
+  %D%/packages/patches/aegis-constness-error.patch         	\
+  %D%/packages/patches/aegis-perl-tempdir1.patch           	\
+  %D%/packages/patches/aegis-perl-tempdir2.patch           	\
+  %D%/packages/patches/aegis-test-fixup-1.patch            	\
+  %D%/packages/patches/aegis-test-fixup-2.patch            	\
  %D%/packages/patches/aegisub-icu59-include-unistr.patch	\
  %D%/packages/patches/aegisub-boost68.patch			\
  %D%/packages/patches/aegisub-boost81.patch			\
@@ -990,6 +995,7 @@ dist_patch_DATA =						\
  %D%/packages/patches/amd-smi-python.patch			\
  %D%/packages/patches/ibus-anthy-fix-tests.patch		\
  %D%/packages/patches/ibus-table-paths.patch			\
+  %D%/packages/patches/anki-mpv-args.patch			\
  %D%/packages/patches/antiword-CVE-2014-8123.patch			\
  %D%/packages/patches/antlr3-3_1-fix-java8-compilation.patch	\
  %D%/packages/patches/antlr3-3_3-fix-java8-compilation.patch	\
@@ -1058,7 +1064,6 @@ dist_patch_DATA =						\
  %D%/packages/patches/binutils-mingw-w64-deterministic.patch	\
  %D%/packages/patches/binutils-2.41-fix-cross.patch		\
  %D%/packages/patches/bloomberg-bde-tools-fix-install-path.patch	\
-  %D%/packages/patches/bmake-run-check-separately.patch	\
  %D%/packages/patches/boolector-find-googletest.patch	\
  %D%/packages/patches/boost-fix-duplicate-definitions-bug.patch	\
  %D%/packages/patches/btanks-scons-python.patch		\
@@ -1117,9 +1122,7 @@ dist_patch_DATA =						\
  %D%/packages/patches/clucene-pkgconfig.patch			\
  %D%/packages/patches/coda-use-system-libs.patch		\
  %D%/packages/patches/cogl-fix-double-free.patch		\
-  %D%/packages/patches/collada-dom-boost.patch			\
-  %D%/packages/patches/collectd-5.11.0-noinstallvar.patch	\
-  %D%/packages/patches/collectd-5.11.0-python-3.11.patch	\
+  %D%/packages/patches/collectd-5.11.0-noinstallvar.patch		\
  %D%/packages/patches/combinatorial-blas-awpm.patch		\
  %D%/packages/patches/combinatorial-blas-io-fix.patch		\
  %D%/packages/patches/compsize-fix-btrfs-progs-compatibility.patch	\
@@ -1140,8 +1143,6 @@ dist_patch_DATA =						\
  %D%/packages/patches/crc32c-unbundle-googletest.patch		\
  %D%/packages/patches/crda-optional-gcrypt.patch		\
  %D%/packages/patches/clucene-contribs-lib.patch               \
-  %D%/packages/patches/cryfs-boost-1.88-fix.patch		\
-  %D%/packages/patches/cryfs-boost-1.89-fix.patch		\
  %D%/packages/patches/csvkit-set-locale-for-tests.patch			\
  %D%/packages/patches/ctranslate2-local-build.patch		\
  %D%/packages/patches/ctune-cmake-disable-git-clone.patch		\
@@ -1175,7 +1176,6 @@ dist_patch_DATA =						\
  %D%/packages/patches/dhclient-script-resolvconf-support.patch \
  %D%/packages/patches/dicedb-remove-init-from-config-subpkg.patch	\
  %D%/packages/patches/directfb-davinci-glibc-228-compat.patch	\
-  %D%/packages/patches/django-compressor-build-with-beautifulsoup-4.14+.patch	\
  %D%/packages/patches/dkimproxy-add-ipv6-support.patch		\
  %D%/packages/patches/doc++-gcc-14.patch			\
  %D%/packages/patches/docbook-utils-documentation-edits.patch	\
@@ -1209,15 +1209,14 @@ dist_patch_DATA =						\
  %D%/packages/patches/eigen-fix-strict-aliasing-bug.patch	\
  %D%/packages/patches/einstein-build.patch			\
  %D%/packages/patches/elfutils-tests-ptrace.patch		\
-  %D%/packages/patches/elixir-httpoison-tag-network-dependent-test-cases.patch			\
  %D%/packages/patches/elixir-path-length.patch			\
  %D%/packages/patches/elm-ghc9.2.patch	\
  %D%/packages/patches/python-treelib-remove-python2-compat.patch	\
  %D%/packages/patches/elm-offline-package-registry.patch	\
  %D%/packages/patches/elm-reactor-static-files.patch		\
+  %D%/packages/patches/emacs-all-the-icons-remove-duplicate-rs.patch	\
  %D%/packages/patches/emacs-deferred-fix-number-of-arguments.patch	\
  %D%/packages/patches/emacs-disable-jit-compilation.patch			\
-  %D%/packages/patches/emacs-doc-toc-shell-commands.patch	\
  %D%/packages/patches/emacs-elisp-autofmt-fix-region-send.patch	\
  %D%/packages/patches/emacs-exec-path.patch			\
  %D%/packages/patches/emacs-fix-scheme-indent-function.patch	\
@@ -1249,9 +1248,7 @@ dist_patch_DATA =						\
  %D%/packages/patches/ergodox-firmware-fix-numpad.patch	\
  %D%/packages/patches/ericw-tools-add-check-for-sse2-in-light.cc.patch	\
  %D%/packages/patches/ericw-tools-gcc-11-pass-const-to-offsetof.patch	\
-  %D%/packages/patches/erlang-binpp-disable-failing-tests.patch	\
  %D%/packages/patches/erlang-man-path.patch			\
-  %D%/packages/patches/erlang-mochiweb-disable-known-to-fail-tests.patch	\
  %D%/packages/patches/esmini-use-pkgconfig.patch		\
  %D%/packages/patches/esmtp-add-lesmtp.patch		\
  %D%/packages/patches/esound-c99.patch         		\
@@ -1327,6 +1324,7 @@ dist_patch_DATA =						\
  %D%/packages/patches/freeimage-unbundle.patch		\
  %D%/packages/patches/freeimage-CVE-2020-21428.patch		\
  %D%/packages/patches/freeimage-CVE-2020-22524.patch		\
+  %D%/packages/patches/freerdp-3.16.0-rpath.patch		\
  %D%/packages/patches/freesolid-automake.patch			\
  %D%/packages/patches/freesolid-autotools.patch		\
  %D%/packages/patches/freesolid-configure.patch		\
@@ -1355,8 +1353,6 @@ dist_patch_DATA =						\
  %D%/packages/patches/gcc-asan-missing-include.patch		\
  %D%/packages/patches/gcc-boot-2.95.3.patch			\
  %D%/packages/patches/gcc-boot-4.6.4.patch			\
-  %D%/packages/patches/gcc-boot-4.6.4-riscv64-support.patch	\
-  %D%/packages/patches/gcc-boot-4.6.4-riscv64-libstdc++-support.patch	\
  %D%/packages/patches/gcc-cross-environment-variables.patch	\
  %D%/packages/patches/gcc-cross-gxx-include-dir.patch          \
  %D%/packages/patches/gcc-fix-texi2pod.patch			\
@@ -1506,7 +1502,6 @@ dist_patch_DATA =						\
  %D%/packages/patches/gnome-tweaks-search-paths.patch		\
  %D%/packages/patches/gnulib-bootstrap.patch			\
  %D%/packages/patches/gnumach-div0.patch			\
-  %D%/packages/patches/gnumach-kmsg-overflow.patch		\
  %D%/packages/patches/gnumach-version.patch			\
  %D%/packages/patches/gnupg-default-pinentry.patch		\
  %D%/packages/patches/gnupg-1-build-with-gcc10.patch		\
@@ -1529,6 +1524,7 @@ dist_patch_DATA =						\
  %D%/packages/patches/gpaste-fix-paths.patch			\
  %D%/packages/patches/gpm-glibc-2.26.patch			\
  %D%/packages/patches/gpodder-disable-updater.patch		\
+  %D%/packages/patches/graalvm-mx-check-failed-after-join.patch	\
  %D%/packages/patches/grantlee-fix-i586-precision.patch	\
  %D%/packages/patches/grantlee-register-metaenumvariable.patch	\
  %D%/packages/patches/grep-timing-sensitive-test.patch		\
@@ -1543,13 +1539,13 @@ dist_patch_DATA =						\
  %D%/packages/patches/guile-default-utf8.patch			\
  %D%/packages/patches/guile-2.2-default-utf8.patch		\
  %D%/packages/patches/guile-relocatable.patch			\
-  %D%/packages/patches/guile-3.0.11-cross-compilation.patch	\
  %D%/packages/patches/guile-3.0-relocatable.patch		\
  %D%/packages/patches/guile-linux-syscalls.patch		\
  %D%/packages/patches/guile-3.0-linux-syscalls.patch		\
  %D%/packages/patches/guile-ac-d-bus-fix-tests.patch		\
  %D%/packages/patches/guile-lib-fix-tests-for-guile2.2.patch		\
  %D%/packages/patches/guile-fibers-cross-build-fix.patch 	\
+  %D%/packages/patches/guile-fibers-destroy-peer-schedulers.patch \
  %D%/packages/patches/guile-fibers-epoll-instance-is-dead.patch \
  %D%/packages/patches/guile-fibers-fd-finalizer-leak.patch	\
  %D%/packages/patches/guile-fibers-wait-for-io-readiness.patch \
@@ -1601,7 +1597,6 @@ dist_patch_DATA =						\
  %D%/packages/patches/hurd-refcounts-assert.patch		\
  %D%/packages/patches/hurd-rumpdisk-no-hd.patch		\
  %D%/packages/patches/hurd-startup.patch			\
-  %D%/packages/patches/hurd-streamio-select.patch		\
  %D%/packages/patches/hurd-proc-zombies.patch			\
  %D%/packages/patches/hwloc-1-test-btrfs.patch			\
  %D%/packages/patches/i3lock-blur-fix-build-on-gcc-10.patch	\
@@ -1617,29 +1612,13 @@ dist_patch_DATA =						\
  %D%/packages/patches/icedove-observer-fix.patch               \
  %D%/packages/patches/icedtea-7-hotspot-aarch64-use-c++98.patch	\
  %D%/packages/patches/icedtea-7-hotspot-pointer-comparison.patch	\
-  %D%/packages/patches/icu4c-20548-dateinterval-timezone.patch	\
-  %D%/packages/patches/icu4c-22132-standardize-vtzone-output.patch	\
-  %D%/packages/patches/icu4c-23069-rosh-hashanah-postponement.patch	\
-  %D%/packages/patches/icu4c-78-double-conversion.patch		\
-  %D%/packages/patches/icu4c-bug-1706949-wasi-workaround.patch	\
-  %D%/packages/patches/icu4c-bug-1790071-ICU-22132-standardize-vtzone-output.patch	\
-  %D%/packages/patches/icu4c-bug-1856290-ICU-20548-dateinterval-timezone.patch	\
-  %D%/packages/patches/icu4c-bug-1954138-dtitvfmt-adopt-calendar.patch	\
-  %D%/packages/patches/icu4c-bug-1972781-chinese-based-calendar.patch	\
-  %D%/packages/patches/icu4c-bug-2000225-ICU-23264-increase-measure-unit-capacity.patch	\
-  %D%/packages/patches/icu4c-bug-2002735-ICU-23277-coptic-single-era.patch	\
-  %D%/packages/patches/icu4c-dayperiod-fractional-seconds.patch	\
-  %D%/packages/patches/icu4c-double-conversion.patch		\
-  %D%/packages/patches/icu4c-dtitvfmt-adopt-calendar.patch	\
-  %D%/packages/patches/icu4c-fix-TestHebrewCalendarInTemporalLeapYear.patch	\
  %D%/packages/patches/icu4c-icu-22132-fix-vtimezone.patch	\
-  %D%/packages/patches/icu4c-suppress-warnings.patch		\
-  %D%/packages/patches/icu4c-wasi-workaround.patch		\
+  %D%/packages/patches/icu4c-fix-TestHebrewCalendarInTemporalLeapYear.patch	\
  %D%/packages/patches/id3lib-CVE-2007-4460.patch			\
  %D%/packages/patches/id3lib-UTF16-writing-bug.patch			\
+  %D%/packages/patches/idris-test-ffi008.patch			\
  %D%/packages/patches/ilmbase-fix-tests.patch			\
  %D%/packages/patches/inferno-fix-crash.patch		\
-  %D%/packages/patches/iniparser-remove-fetchcontent-usage.patch		\
  %D%/packages/patches/inkscape-libxml2.patch		\
  %D%/packages/patches/instead-use-games-path.patch		\
  %D%/packages/patches/intltool-perl-compatibility.patch	\
@@ -1649,9 +1628,11 @@ dist_patch_DATA =						\
  %D%/packages/patches/irrlicht-link-against-needed-libs.patch	\
  %D%/packages/patches/isl-0.11.1-aarch64-support.patch		\
  %D%/packages/patches/ispell-for-linphone-cmake.patch		\
-  %D%/packages/patches/jami-allow-system-zxing-cpp.patch        \
-  %D%/packages/patches/jami-avutil-link.patch   		\
+  %D%/packages/patches/jami-find-package-avutil.patch		\
+  %D%/packages/patches/jami-libjami-headers-search.patch	\
  %D%/packages/patches/jami-qwindowkit.patch			\
+  %D%/packages/patches/jami-skip-tests-requiring-internet.patch	\
+  %D%/packages/patches/jami-unbundle-dependencies.patch		\
  %D%/packages/patches/jamvm-1.5.1-aarch64-support.patch	\
  %D%/packages/patches/jamvm-1.5.1-armv7-support.patch	\
  %D%/packages/patches/jamvm-2.0.0-aarch64-support.patch	\
@@ -1661,6 +1642,7 @@ dist_patch_DATA =						\
  %D%/packages/patches/java-tunnelvisionlabs-antlr-code-too-large.patch	\
  %D%/packages/patches/java-apache-ivy-port-to-latest-bouncycastle.patch	\
  %D%/packages/patches/java-commons-collections-fix-java8.patch \
+  %D%/packages/patches/java-commons-lang-fix-dependency.patch \
  %D%/packages/patches/java-guava-remove-annotation-deps.patch \
  %D%/packages/patches/java-jeromq-fix-tests.patch		\
  %D%/packages/patches/java-openjfx-build-jdk_version.patch     \
@@ -1697,15 +1679,11 @@ dist_patch_DATA =						\
  %D%/packages/patches/libgeotiff-fix-tests-on-i386.patch	\
  %D%/packages/patches/libguestfs-syms.patch            	\
  %D%/packages/patches/libinfinity-renew-test-certificate.patch \
-  %D%/packages/patches/libjami-pkgconf.patch                    \
-  %D%/packages/patches/libjami-simdutf.patch                    \
-  %D%/packages/patches/libmaus2-fix-gcc-13-require-include-cstdint.patch	\
  %D%/packages/patches/libretro-dolphin-emu-data.patch		\
  %D%/packages/patches/libretro-dolphin-emu-gc-font-tool.patch  \
  %D%/packages/patches/libretro-dolphin-emu-libusb-assert.patch \
  %D%/packages/patches/libretro-dolphin-emu-vulkan-headers.patch        \
  %D%/packages/patches/librewolf-add-store-to-rdd-allowlist.patch       \
-  %D%/packages/patches/librewolf-compare-paths.patch		\
  %D%/packages/patches/librewolf-neuter-locale-download.patch	\
  %D%/packages/patches/librewolf-use-system-wide-dir.patch	\
  %D%/packages/patches/libvirt-add-install-prefix.patch	\
@@ -1716,8 +1694,6 @@ dist_patch_DATA =						\
  %D%/packages/patches/lightdm-vnc-ipv6.patch			\
  %D%/packages/patches/lightdm-vnc-color-depth.patch		\
  %D%/packages/patches/lightdm-vncserver-check.patch		\
-  %D%/packages/patches/linphone-desktop-cmake-belcard.patch	\
-  %D%/packages/patches/linphone-desktop-cmake-find-modules.patch	\
  %D%/packages/patches/localed-xorg-keyboard.patch		\
  %D%/packages/patches/kaldi-ignore-failing-test.patch		\
  %D%/packages/patches/kaldi-openblas-0.3.29-compatibility.patch	\
@@ -1903,7 +1879,6 @@ dist_patch_DATA =						\
  %D%/packages/patches/minisat-install.patch			\
  %D%/packages/patches/miniz-for-pytorch.patch			\
  %D%/packages/patches/mit-krb5-hurd.patch			\
-  %D%/packages/patches/mitm-cache-head-requests.patch   	\
  %D%/packages/patches/mpc123-initialize-ao.patch		\
  %D%/packages/patches/mpg321-CVE-2019-14247.patch		\
  %D%/packages/patches/mpg321-gcc-10.patch			\
@@ -1952,6 +1927,7 @@ dist_patch_DATA =						\
  %D%/packages/patches/netsurf-system-utf8proc.patch		\
  %D%/packages/patches/netsurf-y2038-tests.patch		\
  %D%/packages/patches/netsurf-longer-test-timeout.patch	\
+  %D%/packages/patches/nextpnr-gtest.patch			\
  %D%/packages/patches/nextpnr-imgui.patch			\
  %D%/packages/patches/nhc98-c-update.patch			\
  %D%/packages/patches/nix-dont-build-html-doc.diff		\
@@ -1995,8 +1971,7 @@ dist_patch_DATA =						\
  %D%/packages/patches/openboardview-use-system-mpc.patch	\
  %D%/packages/patches/openbox-add-fix-for-glib2-exposed-segfault.patch \
  %D%/packages/patches/openbox-python3.patch			\
-  %D%/packages/patches/opendht-meson-install-headers.patch	\
-  %D%/packages/patches/opendht-meson-liburing.patch     	\
+  %D%/packages/patches/opendht-nanosleep.patch			\
  %D%/packages/patches/openexr-2-gcc-14.patch			\
  %D%/packages/patches/openfst-for-vosk-fix-unique-ptr.patch	\
  %D%/packages/patches/openjdk-currency-time-bomb.patch		\
@@ -2037,6 +2012,7 @@ dist_patch_DATA =						\
  %D%/packages/patches/opentaxsolver-file-browser-fix.patch     \
  %D%/packages/patches/open-zwave-hidapi.patch			\
  %D%/packages/patches/opusfile-CVE-2022-47021.patch		\
+  %D%/packages/patches/orangeduck-mpc-fix-pkg-config.patch	\
  %D%/packages/patches/orbit2-fix-array-allocation-32bit.patch \
  %D%/packages/patches/orpheus-cast-errors-and-includes.patch	\
  %D%/packages/patches/ots-no-include-missing-file.patch	\
@@ -2074,11 +2050,12 @@ dist_patch_DATA =						\
  %D%/packages/patches/python-bed-reader-use-store-samples.patch	\
  %D%/packages/patches/python-chai-drop-python2.patch		\
  %D%/packages/patches/python-clarabel-blas.patch		\
-  %D%/packages/patches/python-daemon-relax-lockfile.patch	\
  %D%/packages/patches/python-docrepr-fix-tests.patch		\
+  %D%/packages/patches/python-feedparser-missing-import.patch	\
  %D%/packages/patches/python-gpg-setup-72.patch                \
  %D%/packages/patches/python-hdmedians-replace-nose.patch	\
  %D%/packages/patches/python-louvain-fix-test.patch		\
+  %D%/packages/patches/python-matplotlib-fix-legend-loc-best-test.patch	\
  %D%/packages/patches/python-mohawk-pytest.patch	\
  %D%/packages/patches/python-msal-requests.patch	\
  %D%/packages/patches/python-norns-nose.patch			\
@@ -2221,10 +2198,12 @@ dist_patch_DATA =						\
  %D%/packages/patches/python-pytorch-system-libraries.patch	\
  %D%/packages/patches/python-pytorch-without-kineto.patch	\
  %D%/packages/patches/python-robotframework-sshlibrary-rf5-compat.patch \
+  %D%/packages/patches/python-scipy-i686.patch 			\
  %D%/packages/patches/python-vaex-core-fix-tsl-use.patch	\
  %D%/packages/patches/python-vega-datasets-remove-la-riots-code.patch	\
  %D%/packages/patches/python-versioneer-guix-support.patch	\
  %D%/packages/patches/python-werkzeug-tests.patch		\
+  %D%/packages/patches/python-xmp-toolkit-add-missing-error-codes.patch	\
  %D%/packages/patches/qdigidoc-bundle-config-files.patch       \
  %D%/packages/patches/qdigidoc-bundle-tsl-files.patch          \
  %D%/packages/patches/qemu-build-info-manual.patch		\
@@ -2232,7 +2211,6 @@ dist_patch_DATA =						\
  %D%/packages/patches/qemu-glibc-2.30.patch 			\
  %D%/packages/patches/qemu-fix-agent-paths.patch 		\
  %D%/packages/patches/qemu-fix-test-virtio-version.patch       \
-  %D%/packages/patches/qemu-disable-aarch64-migration-test.patch	\
  %D%/packages/patches/qrcodegen-cpp-cmake.patch		\
  %D%/packages/patches/qtbase-absolute-runpath.patch		\
  %D%/packages/patches/qtbase-qmake-fix-includedir.patch 	\
@@ -2243,8 +2221,6 @@ dist_patch_DATA =						\
  %D%/packages/patches/qtbase-5-use-TZDIR.patch			\
  %D%/packages/patches/qtscript-disable-tests.patch		\
  %D%/packages/patches/quagga-reproducible-build.patch          \
-  %D%/packages/patches/quickjs-ng-64-bits-precision-on-i686.patch	\
-  %D%/packages/patches/quickjs-ng-fix-atomics.pause-on-32-bit.patch	\
  %D%/packages/patches/quilt-grep-compat.patch 			\
  %D%/packages/patches/qmk-firmware-fix-hacker-dvorak.patch 	\
  %D%/packages/patches/qtwayland-dont-recreate-callbacks.patch	\
@@ -2285,9 +2261,6 @@ dist_patch_DATA =						\
  %D%/packages/patches/rng-tools-revert-build-randstat.patch	\
  %D%/packages/patches/rocclr-5.6.0-enable-gfx800.patch		\
  %D%/packages/patches/rocm-opencl-runtime-4.3-noclinfo.patch 	\
-  %D%/packages/patches/rocm-bandwidth-test-fix-external-packages-search.patch	\
-  %D%/packages/patches/rocm-bandwidth-test-fix-hsa-include-file-lookup.patch	\
-  %D%/packages/patches/rocm-bandwidth-test-take-default-gpus-from-environment.patch	\
  %D%/packages/patches/rottlog-direntry.patch 			\
  %D%/packages/patches/ruby-actionpack-remove-browser-tests.patch	\
  %D%/packages/patches/ruby-activesupport-fix-deprecation-warning.patch	\
@@ -2321,7 +2294,6 @@ dist_patch_DATA =						\
  %D%/packages/patches/sbcl-burgled-batteries3-fix-signals.patch	\
  %D%/packages/patches/sbcl-ciel-repl.patch			\
  %D%/packages/patches/sbcl-clml-fix-types.patch		\
-  %D%/packages/patches/sbcl-cl-redis-replace-sbcl-specific-calls.patch	\
  %D%/packages/patches/sbcl-eazy-gnuplot-skip-path-check.patch	\
  %D%/packages/patches/sbcl-lack-fix-tests.patch		\
  %D%/packages/patches/sbcl-png-fix-sbcl-compatibility.patch	\
@@ -2340,6 +2312,7 @@ dist_patch_DATA =						\
  %D%/packages/patches/seq24-rename-mutex.patch			\
  %D%/packages/patches/libsequoia-fix-ffi-Makefile.patch	\
  %D%/packages/patches/libsequoia-remove-store.patch		\
+  %D%/packages/patches/shaderc-for-pcsx2-changes.patch		\
  %D%/packages/patches/shakespeare-spl-fix-grammar.patch		\
  %D%/packages/patches/shared-mime-info-xdgmime-path.patch	\
  %D%/packages/patches/sharutils-CVE-2018-1000097.patch		\
@@ -2436,8 +2409,6 @@ dist_patch_DATA =						\
  %D%/packages/patches/ucx-tcp-iface-ioctl.patch		\
  %D%/packages/patches/uftrace-fix-tests.patch			\
  %D%/packages/patches/ultrastar-deluxe-no-freesans.patch		\
-  %D%/packages/patches/unity-test-set-subdir-correctly.patch		\
-  %D%/packages/patches/unity-test-support-int64.patch		\
  %D%/packages/patches/ungoogled-chromium-extension-search-path.patch	\
  %D%/packages/patches/ungoogled-chromium-RUNPATH.patch		\
  %D%/packages/patches/ungoogled-chromium-system-nspr.patch	\
@@ -2538,8 +2509,8 @@ dist_patch_DATA =						\
  %D%/packages/patches/xplanet-1.3.1-xpUtil-Add2017LeapSecond.cpp.patch	\
  %D%/packages/patches/xpra-5.0-install_libs.patch              \
  %D%/packages/patches/xpra-5.0-systemd-run.patch              \
-  %D%/packages/patches/xpra-6.4-systemd-run.patch		\
-  %D%/packages/patches/xpra-6.4-install_libs.patch		\
+  %D%/packages/patches/xpra-6.0-systemd-run.patch		\
+  %D%/packages/patches/xpra-6.1-install_libs.patch		\
  %D%/packages/patches/xterm-370-explicit-xcursor.patch		\
  %D%/packages/patches/xygrib-fix-finding-data.patch		\
  %D%/packages/patches/xygrib-newer-proj.patch			\
@@ -235,6 +235,50 @@ incorporated.")
    (home-page "https://brltty.app/")
    (license license:lgpl2.1+)))

+(define-public florence
+  (package
+    (name "florence")
+    (version "0.6.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "mirror://sourceforge/florence/florence/" version
+                           "/florence-" version ".tar.bz2"))
+       (sha256
+        (base32
+         "07h9qm22krlwayhzvc391lr23vicw81s48g7rirvx1fj0zyr4aa2"))))
+    (build-system glib-or-gtk-build-system)
+    (arguments
+     `(#:configure-flags (list "--with-xtst"
+                               "--without-docs"
+                               "--with-notification")))
+    (inputs
+     (list libxml2
+           libglade
+           (librsvg-for-system)
+           gstreamer
+           cairo
+           gtk+
+           libxtst
+           libxcomposite
+           libnotify))
+    (native-inputs
+     (list gettext-minimal intltool pkg-config))
+    (home-page "https://florence.sourceforge.net/")
+    (synopsis "Extensible, scalable virtual keyboard for X11")
+    (description
+     "Florence is an extensible scalable virtual keyboard for X11.
+It is useful for people who can't use a real hardware keyboard (for
+example for people with disabilities), but you must be able to use
+a pointing device (as a mouse, a trackball, a touchscreen or opengazer).
+
+Florence stays out of your way when you don't need it: it appears on the
+screen only when you need it.  A timer-based auto-click input method is
+available to help to click.")
+    ;; The documentation is under FDL1.2, but we do not install the
+    ;; documentation.
+    (license license:gpl2+)))
+
 (define-public footswitch
  (let ((commit "e455d6752221b9e9c3818cc304c873b9c2792490")
        (revision "0"))
@@ -48,7 +48,7 @@
 ;;; Copyright © 2021, 2025 muradm <mail@muradm.net>
 ;;; Copyright © 2021 pineapples <guixuser6392@protonmail.com>
 ;;; Copyright © 2021 Petr Hodina <phodina@protonmail.com>
-;;; Copyright © 2021-2026 Artyom V. Poptsov <poptsov.artyom@gmail.com>
+;;; Copyright © 2021-2025 Artyom V. Poptsov <poptsov.artyom@gmail.com>
 ;;; Copyright © 2022 Wamm K. D. <jaft.r@outlook.com>
 ;;; Copyright © 2022 Roman Riabenko <roman@riabenko.com>
 ;;; Copyright © 2022 Petr Hodina <phodina@protonmail.com>
@@ -72,14 +72,13 @@
 ;;; Copyright © 2024 nathan <nathan_mail@nborghese.com>
 ;;; Copyright © 2024 Nikita Domnitskii <nikita@domnitskii.me>
 ;;; Copyright © 2024 Roman Scherer <roman@burningswell.com>
-;;; Copyright © 2024-2026 Ashish SHUKLA <ashish.is@lostca.se>
+;;; Copyright © 2024, 2025 Ashish SHUKLA <ashish.is@lostca.se>
 ;;; Copyright © 2024 Ashvith Shetty <ashvithshetty10@gmail.com>
 ;;; Copyright © 2025 Dariqq <dariqq@posteo.net>
 ;;; Copyright © 2024 nik gaffney <nik@fo.am>
 ;;; Copyright © 2025 Simon Streit <simon@netpanic.org>
 ;;; Copyright © 2025 Luca Kredel <luca.kredel@web.de>
 ;;; Copyright © 2025 ROCKTAKEY <rocktakey@gmail.com>
-;;; Copyright © 2026 Andreas Enge <andreas@enge.fr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -139,7 +138,6 @@
  #:use-module (gnu packages dns)
  #:use-module (gnu packages elf)
  #:use-module (gnu packages file)
-  #:use-module (gnu packages file-systems)
  #:use-module (gnu packages flex)
  #:use-module (gnu packages fonts)
  #:use-module (gnu packages freedesktop)
@@ -1076,7 +1074,7 @@ console.")
 (define-public btop
  (package
    (name "btop")
-    (version "1.4.6")
+    (version "1.4.5")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -1085,7 +1083,7 @@ console.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "1nj58dbv3c0rj8fngldkyrmdmacmjnbg8ch1c07ik97kqnnzd3l7"))))
+                "03dchclmbjphirzqii4m0vyqfd0vw1k8mgpchmr13g3brlfzxd34"))))
    (build-system gnu-build-system)
    (native-inputs (list lowdown))
    (arguments
@@ -2527,7 +2525,7 @@ system administrator.")
    (inputs
     (append (list coreutils zlib)
             (if (target-hurd?)
-                 (list libxcrypt)
+                 '()
                 (list linux-pam))))
    (home-page "https://www.sudo.ws/")
    (synopsis "Run commands as root")
@@ -3148,25 +3146,20 @@ track changes in important system configuration files.")
 (define-public libcap-ng
  (package
    (name "libcap-ng")
-    (version "0.9")
+    (version "0.8.5")
    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/stevegrubb/libcap-ng")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
+              (method url-fetch)
+              (uri (string-append
+                    "https://people.redhat.com/sgrubb/libcap-ng/libcap-ng-"
+                    version ".tar.gz"))
              (sha256
               (base32
-                "0izrrh2kmhi6dcy5iqcccmx90nwlaqcglhc60sl8n5ds8il14pi8"))))
+                "1zy6ga6cqi6qvy2p3091i8zbillymyv01g6gmapriymx3i6jk99v"))))
    (build-system gnu-build-system)
    (arguments
     `(#:configure-flags
       (list "--disable-static"
             "--without-python")))
-    (inputs
-     (list libbpf))
-    (native-inputs
-     (list autoconf automake libtool pkg-config))
    (home-page "https://people.redhat.com/sgrubb/libcap-ng/")
    (synopsis "Library for more easily working with POSIX capabilities")
    (description
@@ -3420,7 +3413,7 @@ modules and plugins that extend Ansible.")
 (define-public debops
  (package
    (name "debops")
-    (version "3.2.5")
+    (version "3.2.4")
    (source
     (origin
       (method git-fetch)
@@ -3429,14 +3422,13 @@ modules and plugins that extend Ansible.")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "15wfhha2b315i15l40j3sylyvs3mdrfw5awzq4cix51l5jppx8z5"))
+        (base32 "0y7bmrnynbw0hz88shfv301a9fsank2cx86fvb7jx6g6kkbsa9pz"))
       (patches
        (search-patches "debops-setup-py-avoid-git.patch"))))
    (build-system pyproject-build-system)
    (native-inputs (list python-setuptools))
    (inputs
     (list ansible
-           bash-minimal
           encfs
           fuse-2
           util-linux ;; for umount
@@ -4505,7 +4497,7 @@ you are running, what theme or icon set you are using, etc.")
 (define-public hyfetch
  (package
    (name "hyfetch")
-    (version "2.0.5")
+    (version "2.0.2")
    (source
     (origin
       (method git-fetch)
@@ -4514,11 +4506,12 @@ you are running, what theme or icon set you are using, etc.")
             (commit version)))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "1xb0m7mna6mm3gc823c40rfdhnw39afdr3g7kb4cqrc21s7fdd5y"))))
+        (base32 "1h3s8m6csmxj815cpzh30m59132n8drxya0s2lh5ngjkpazgdnv3"))))
    (build-system pyproject-build-system)
    (native-inputs
-     (list python-hatchling
-           python-pytest))
+     (list python-pytest
+           python-setuptools
+           python-wheel))
    (inputs
     (list python-typing-extensions))
    (home-page "https://github.com/hykilpikonna/HyFetch")
@@ -4724,7 +4717,7 @@ information tool.")
 (define-public fastfetch-minimal
  (package
    (name "fastfetch-minimal")
-    (version "2.57.0")
+    (version "2.55.1")
    (source
     (origin
       (method git-fetch)
@@ -4733,13 +4726,10 @@ information tool.")
             (commit version)))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "1cipr083bf8frqijvxnff7bgzvzczxksicaqj0m22avyhzxc7p3d"))
+        (base32 "0a2a8rp75nx16gvq0918999hifr2lph8dagpfipmyflaa5awlw54"))
       (modules '((guix build utils)))
       (snippet '(begin
-                   (delete-file-recursively "src/3rdparty")
-                   (substitute* "src/modules/logo/logo.c"
-                     (("\"3rdparty/yyjson/yyjson.h\"")
-                      "<yyjson.h>"))))))
+                   (delete-file-recursively "src/3rdparty")))))
    (build-system cmake-build-system)
    (arguments
     (list
@@ -4783,8 +4773,7 @@ system distribution, akin to many similar tools.")
               libxcb
               mesa
               wayland
-               zlib ;for imagemagick and an #ifdef
-               zfs)))))
+               zlib))))) ;for imagemagick and an #ifdef

 (define-public nnn
  (package
@@ -4990,7 +4979,7 @@ launch daemons into the relevant nodes.")
                                     ;; Fails to build as c++17.
                                     "CXXFLAGS=-std=c++14 -O2 -g")))
    (inputs
-     (list openmpi munge launchmon libgcrypt zlib))
+     (list openmpi munge launchmon libgcrypt))
    (synopsis "Scalable library loading in HPC environments")
    (description
     "Spindle is a tool for improving the performance of dynamic library and
@@ -5142,102 +5131,36 @@ support forum.  It runs with the @code{/exec} command in most IRC clients.")
 (define-public python-pyudev
  (package
    (name "python-pyudev")
-    (version "0.24.4")
+    (version "0.22.0")
    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/pyudev/pyudev")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32
-         "1m7xrsazbij5dcmnirn9hq6cwrfmzam5mr3kmvvcgnh24nhm401x"))))
-    (build-system pyproject-build-system)
+      (origin
+        (method url-fetch)
+        (uri (pypi-uri "pyudev" version))
+        (sha256
+          (base32
+            "0xmj6l08iih2js9skjqpv4w7y0dhxyg91zmrs6v5aa65gbmipfv9"))))
+    (build-system python-build-system)
    (arguments
-     (list
-      ;; tests: 46 passed, 36 skipped, 79 deselected, 2 warnings
-      #:test-flags
-      ;; These tests actually try to read /sys/devices:
-      #~(list "-k" (string-join
-                    (list "not  test_action"
-                          "test_action_mock"
-                          "test_ancestors"
-                          "test_anything"
-                          "test_asbool"
-                          "test_asint"
-                          "test_asstring"
-                          "test_attributes"
-                          "test_contains_mock"
-                          "test_deprecated_handler"
-                          "test_device_node"
-                          "test_device_number"
-                          "test_device_ordering"
-                          "test_device_path"
-                          "test_device_sys_name"
-                          "test_driver"
-                          "test_equality"
-                          "test_fake"
-                          "test_fake_monitor"
-                          "test_find_parent_no_devtype_mock"
-                          "test_find_parent_with_devtype_mock"
-                          "test_from_device_file"
-                          "test_from_device_number"
-                          "test_from_device_number_wrong_type"
-                          "test_from_name"
-                          "test_from_name_no_device_in_existing_subsystem"
-                          "test_from_path"
-                          "test_from_path_strips_leading_slash"
-                          "test_from_sys_path"
-                          "test_getitem"
-                          "test_getitem"
-                          "test_getitem_nonexisting"
-                          "test_hash"
-                          "test_inequality"
-                          "test_is_initialized"
-                          "test_is_initialized_mock"
-                          "test_iteration"
-                          "test_iteration_mock"
-                          "test_key_subset"
-                          "test_length"
-                          "test_links"
-                          "test_match"
-                          "test_match_parent"
-                          "test_match_property_bool"
-                          "test_match_subsystem"
-                          "test_match_subsystem_nomatch_complete"
-                          "test_match_subsystem_nomatch_unfulfillable"
-                          "test_name"
-                          "test_non_iterable"
-                          "test_parent"
-                          "test_path"
-                          "test_sequence_number"
-                          "test_subsystem"
-                          "test_sys_number"
-                          "test_sys_path"
-                          "test_tags"
-                          "test_time_since_initialized"
-                          "test_time_since_initialized_mock"
-                          "test_traverse"
-                          "test_type"
-                          "test_unsetitem")
-                    " and not "))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'patch-ctypes-udev
-            (lambda* (#:key inputs #:allow-other-keys)
-              (substitute* "src/pyudev/core.py"
-                (("\"udev\"")
-                 (format #f "~s"
-                         (search-input-file inputs "/lib/libudev.so"))))
-              (substitute* "src/pyudev/_ctypeslib/utils.py"
+     `(#:tests? #f ; Tests require /sys
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'patch-ctypes-udev
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let ((eudev (assoc-ref inputs "eudev")))
+               (substitute* "src/pyudev/core.py"
+                (("'udev'")
+                 (string-append "'" eudev "/lib/libudev.so'")))
+               (substitute* "src/pyudev/_ctypeslib/utils.py"
                ;; Use absolute paths instead of keys.
-                (("= find_library") "= ")))))))
-    (native-inputs
-     (list python-pytest
-           python-setuptools))
+                (("= find_library") "= "))
+               #t))))))
    (inputs
     (list eudev))
+    (propagated-inputs
+     (list python-six))
+    (native-inputs
+     (list python-docutils python-hypothesis python-mock python-pytest
+           python-sphinx))
    (home-page "https://pyudev.readthedocs.io/")
    (synopsis "Python udev binding")
    (description "This package provides @code{udev} bindings for Python.")
@@ -5278,7 +5201,7 @@ cache of unix and unix-like systems.")
 (define-public solaar
  (package
    (name "solaar")
-    (version "1.1.18")
+    (version "1.1.16")
    (source
     (origin
       (method git-fetch)
@@ -5287,7 +5210,7 @@ cache of unix and unix-like systems.")
             (commit version)))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "0wf8rkm9anxr9iw51yxaav9cifpfkf1m4cw7i9rfsq8xb3aa2n9b"))))
+        (base32 "1q05pcrl1pr6ls92m5k690qrwqb4nz1lganxvbj9b40w3c6nh5iy"))))
    (build-system pyproject-build-system)
    (native-inputs
     (list python-pytest
@@ -5664,7 +5587,7 @@ entries, providing commands to add, remove, comment, and search.")
 (define-public nmrpflash
  (package
    (name "nmrpflash")
-    (version "0.9.26")
+    (version "0.9.25")
    (source
     (origin
       (method git-fetch)
@@ -5673,7 +5596,7 @@ entries, providing commands to add, remove, comment, and search.")
         (url "https://github.com/jclehner/nmrpflash")
         (commit (string-append "v" version))))
       (sha256
-        (base32 "19dna96qg32nscvsalgd0xslp3da84aj196cczdm0ixhv1k9pvi3"))
+        (base32 "0xqvj52m6rk0gma8saqvp8b4jms9hca8i1v2kb5hcd6miaqgx276"))
       (file-name (git-file-name name version))))
    (build-system gnu-build-system)
    (arguments
@@ -5922,11 +5845,6 @@ This program allows you to view and manipulate this EEPROM list.")
         (replace 'configure
           (lambda* (#:key outputs #:allow-other-keys)
             (setenv "CONFIG_SHELL" (which "bash"))
-             (setenv "CFLAGS"
-               (string-append "-g -O2 "
-                              "-Wno-error=implicit-int "
-                              "-Wno-error=implicit-function-declaration "
-                              "-Wno-error=incompatible-pointer-types"))
             (invoke "./configure"
              (string-append "--prefix="
                             (assoc-ref outputs "out"))))))))
@@ -7036,7 +6954,7 @@ network, which causes enabled computers to power on.")
 (define-public witr
  (package
    (name "witr")
-    (version "0.1.7")
+    (version "0.1.1")
    (source
     (origin
       (method git-fetch)
@@ -7045,7 +6963,7 @@ network, which causes enabled computers to power on.")
              (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "18xx01lxd5j019gy9jmpms3awv4snlr028w01bfkyfid6hlwxbq2"))))
+        (base32 "016yiwn0b00ynllka6h2w6gk2yjzj5nx2xf26shb0cz4crdwww0d"))))
    (build-system go-build-system)
    (arguments
     (list
@@ -7071,7 +6989,7 @@ working directory, user, pid, command, and so on.")
 (define-public xfel
  (package
    (name "xfel")
-    (version "1.3.5")
+    (version "1.3.3")
    (source
     (origin
       (method git-fetch)
@@ -7079,7 +6997,7 @@ working directory, user, pid, command, and so on.")
              (url "https://github.com/xboot/xfel")
              (commit (string-append "v" version))))
       (sha256
-        (base32 "1vmb3dr3vplxdxn9i8i4chdnfihb429rakvkqsfccb885ivkkn3b"))
+        (base32 "15xlqkj7lf3xszgfyci32lrwdjhqmmm9clmwlp1qn6hywal3d2p4"))
       (file-name (git-file-name name version))))
    (native-inputs
     (list pkg-config))
@@ -9,7 +9,6 @@
 ;;; Copyright © 2023 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
 ;;; Copyright © 2024, 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
-;;; Copyright © 2025 Maxim Cournoyer <maxim@guixotic.coop>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -132,24 +131,29 @@ read all zbar supported codes.")
 (define-public zint
  (package
    (name "zint")
-    (version "2.16.0")
+    (version "2.15.0")
    (source (origin
              (method git-fetch)
              (uri (git-reference
-                     (url "https://github.com/zint/zint")
-                     (commit version)))
+                    (url "https://github.com/zint/zint")
+                    (commit version)))
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "1zpv9ar1kfjl3bb27jc8hd8601zcda9yv4dz1jhxfhdsg6v4cdg7"))))
-    (build-system cmake-build-system)
+                "0arnpdqspyy3bxafm3lqc020bhwq3vazfnja2fk2s8c7mr9wimgr"))))
+    (build-system qt-build-system)
    (arguments
-     (list #:disallowed-references (list qtbase)
-           #:parallel-tests? #f         ;test suite fails otherwise
-           #:configure-flags #~(list "-DZINT_TEST=ON"
-                                     "-DZINT_UNINSTALL=OFF")))
-    (native-inputs (list pkg-config))
-    (inputs (list libpng))
+     (list #:qtbase qtbase
+           #:parallel-tests? #f
+           #:configure-flags
+           #~(list "-DZINT_QT6=ON"
+                   "-DZINT_TEST=ON"
+                   "-DZINT_UNINSTALL=OFF")))
+    (native-inputs
+     (list pkg-config qttools))
+    (inputs
+     (list libpng
+           qtsvg))
    (synopsis "Barcode encoding library")
    (description "Zint is a suite of programs to allow easy encoding of data in
 any of the wide range of public domain barcode standards and to allow
@@ -157,23 +161,6 @@ integration of this capability into your own programs.")
    (home-page "https://www.zint.org.uk/")
    (license (list license:bsd-3 license:gpl3+))))

-(define-public zint-with-qt
-  (package/inherit zint
-    (name "zint-with-qt")
-    (build-system qt-build-system)
-    (arguments (substitute-keyword-arguments (package-arguments zint)
-                 ((#:disallowed-references references)
-                  (delete qtbase references))
-                 ((#:qtbase _ #f)
-                  qtbase)
-                 ((#:configure-flags flags ''())
-                  #~(cons "-DZINT_QT6=ON" #$flags))))
-    (inputs (modify-inputs (package-inputs zint)
-              ;; The UI library of qttools is linked to; hence it must be used
-              ;; as an input rather than a native input.
-              (append qtsvg qttools)))
-    (synopsis "Barcode encoding library (with graphical user interface)")))
-
 (define-public zxing-cpp
  (package
    (name "zxing-cpp")
@@ -805,7 +805,7 @@ a C program.")
    (native-inputs
     (list googletest
           pkg-config
-           python-numpy
+           python-numpy-2
           python-wrapper))
    (inputs
     (list fftw
@@ -37,7 +37,6 @@
  #:use-module (guix git-download)
  #:use-module (guix build-system android-ndk)
  #:use-module (guix build-system cmake)
-  #:use-module (guix build-system copy)
  #:use-module (guix build-system emacs)
  #:use-module (guix build-system gnu)
  #:use-module (guix build-system go)
@@ -468,17 +467,29 @@ the corresponding @command{rsync} flags.")
  (package
    (name "mkbootimg")
    (version (android-platform-version))
-    (source (android-platform-system-core version))
-    (build-system copy-build-system)
+    (source (origin
+              (inherit (android-platform-system-core version))))
+    (build-system python-build-system)
    (arguments
-     (list
-      #:install-plan
-      ''(("mkbootimg/mkbootimg" "bin/")
-         ("mkbootimg/bootimg.h" "include/"))))
-    (inputs (list python-wrapper))
+     `(#:tests? #f
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'enter-source
+           (lambda _ (chdir "mkbootimg") #t))
+         (delete 'configure)
+         (delete 'build)
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (bin (string-append out "/bin"))
+                    (include (string-append out "/include")))
+               (install-file "mkbootimg" bin)
+               (install-file "bootimg.h" include)
+               #t))))))
    (home-page "https://developer.android.com/studio/command-line/adb.html")
    (synopsis "Tool to create Android boot images")
-    (description "This package provides a tool to create Android Boot Images.")
+    (description "This package provides a tool to create Android Boot
+Images.")
    (license license:asl2.0)))

 (define-public android-safe-iop
@@ -972,7 +983,7 @@ The standard for the ETC1 texture format can be found at
 (define-public git-repo
  (package
    (name "git-repo")
-    (version "2.60.1")
+    (version "2.4.1")
    (source
     (origin
       (method git-fetch)
@@ -981,90 +992,88 @@ The standard for the ETC1 texture format can be found at
             (commit (string-append "v" version))))
       (file-name (string-append "git-repo-" version "-checkout"))
       (sha256
-        (base32 "1cx1b0zmvnmglyn6kbdifcy6w3gm89z2icw4pykxm0wyasy7sc1c"))))
-    (build-system pyproject-build-system)
+        (base32 "0khg1731927gvin73dcbw1657kbfq4k7agla5rpzqcnwkk5agzg3"))))
+    (build-system python-build-system)
    (arguments
-     (list
-      #:test-flags
-      #~(list
-         ;; XXX: Requires GnuPG.
-         "--deselect=tests/test_wrapper.py::SetupGnuPG::test_full"
-         ;; This is expected, as the package is patched for this.
-         "-k" "not test_fetches_when_stale")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'build 'set-executable-paths
-            (lambda* (#:key inputs outputs #:allow-other-keys)
-              (substitute* '("repo" "git_command.py")
-                (("^GIT = 'git'")
-                 (format #f "GIT = '~a'"
-                         (search-input-file inputs "/bin/git"))))
-              (substitute* "git_config.py"
-                ((" command_base = \\['ssh',")
-                 (format #f " command_base = ['~a',"
-                         (search-input-file inputs "/bin/ssh"))))))
-          (add-before 'build 'do-not-self-update
-            (lambda* (#:key outputs #:allow-other-keys)
-              ;; Setting the REPO_MAIN variable to an absolute file name is
-              ;; enough to have _FindRepo return the store main.py file.  The
-              ;; self update mechanism is activated with the call to _Init() in
-              ;; main(), so we bypass it.
-              
-              ;; Ticket requesting upstream to provide a mean to disable the
-              ;; self update mechanism:
-              ;; https://bugs.chromium.org/p/gerrit/issues/detail?id=12407.
-              (let ((repo-main (string-append #$output
-                                              "/share/git-repo/main.py")))
-                (substitute* "repo"
-                  (("^REPO_MAIN = .*")
-                   (format #f "REPO_MAIN = ~s~%" repo-main))
-                  ((" _Init\\(args, gitc_init=\\(cmd ==.*" all)
-                   (string-append "True #" all)))
-                ;; Prevent repo from trying to git describe its version from
-                ;; the (disabled) self updated copy.
-                (substitute* "git_command.py"
-                  (("ver = getattr\\(RepoSourceVersion.*")
-                   (format #f "ver = ~s~%" #$version)))
-                (substitute* "subcmds/version.py"
-                  (("rp_ver = .*")
-                   (format #f "rp_ver = ~s~%" #$version)))
-                ;; Prevent repo from adding its (disabled) self update copy to
-                ;; the list of projects to fetch when using 'repo sync'.
-                (substitute* "subcmds/sync.py"
-                  (("to_fetch\\.extend\\(all_projects\\).*" all)
-                   (string-append "#" all))
-                  (("self\\._Fetch\\(to_fetch")
-                   "self._Fetch(all_projects")
-                  (("_PostRepoFetch\\(rp, opt\\.repo_verify).*" all)
-                   (string-append "pass #" all))))))
-          (delete 'build) ;nothing to build
-          (add-before 'check 'configure-git
-            (lambda _
-              (setenv "HOME" (getcwd))
-              ;; XXX: pytest needs this for conftest to import local modules.
-              (setenv "PYTHONPATH" (getcwd))
-              (invoke "git" "config" "--global" "user.email" "you@example.com")
-              (invoke "git" "config" "--global" "user.name" "Your Name")))
-          (replace 'install
-            (lambda* (#:key outputs #:allow-other-keys)
-              (let* ((bin-dir (string-append #$output "/bin"))
-                     (repo-dir (string-append #$output "/share/"
-                                              #$name)))
-                (mkdir-p bin-dir)
-                (mkdir-p repo-dir)
-                (copy-recursively "." repo-dir)
-                (delete-file-recursively (string-append repo-dir "/tests"))
-                (symlink (string-append repo-dir "/repo")
-                         (string-append bin-dir "/repo"))))))))
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'build 'set-executable-paths
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (git (assoc-ref inputs "git"))
+                    (ssh (assoc-ref inputs "ssh")))
+               (substitute* '("repo" "git_command.py")
+                 (("^GIT = 'git'")
+                  (string-append "GIT = '" git "/bin/git'")))
+               (substitute* "git_config.py"
+                 ((" command_base = \\['ssh',")
+                  (string-append " command_base = ['" ssh "/bin/ssh',")))
+               #t)))
+         (add-before 'build 'do-not-self-update
+           (lambda* (#:key outputs #:allow-other-keys)
+             ;; Setting the REPO_MAIN variable to an absolute file name is
+             ;; enough to have _FindRepo return the store main.py file.  The
+             ;; self update mechanism is activated with the call to _Init() in
+             ;; main(), so we bypass it.
+
+             ;; Ticket requesting upstream to provide a mean to disable the
+             ;; self update mechanism:
+             ;; https://bugs.chromium.org/p/gerrit/issues/detail?id=12407.
+             (let* ((out (assoc-ref outputs "out"))
+                    (repo-main (string-append out "/share/git-repo/main.py")))
+               (substitute* "repo"
+                 (("^REPO_MAIN = .*")
+                  (format #f "REPO_MAIN = ~s~%" repo-main))
+                 ((" _Init\\(args, gitc_init=\\(cmd ==.*" all)
+                  (string-append "True #" all)))
+               ;; Prevent repo from trying to git describe its version from
+               ;; the (disabled) self updated copy.
+               (substitute* "git_command.py"
+                 (("ver = getattr\\(RepoSourceVersion.*")
+                  (format #f "ver = ~s~%" ,version)))
+               (substitute* "subcmds/version.py"
+                 (("rp_ver = .*")
+                  (format #f "rp_ver = ~s~%" ,version)))
+               ;; Prevent repo from adding its (disabled) self update copy to
+               ;; the list of projects to fetch when using 'repo sync'.
+               (substitute* "subcmds/sync.py"
+                 (("to_fetch\\.extend\\(all_projects\\).*" all)
+                  (string-append "#" all))
+                 (("self\\._Fetch\\(to_fetch")
+                  "self._Fetch(all_projects")
+                 (("_PostRepoFetch\\(rp, opt\\.repo_verify).*" all)
+                  (string-append "#" all))))))
+         (delete 'build) ; nothing to build
+         (add-before 'check 'configure-git
+           (lambda _
+             (setenv "HOME" (getcwd))
+             (invoke "git" "config" "--global" "user.email" "you@example.com")
+             (invoke "git" "config" "--global" "user.name" "Your Name")))
+         (replace 'check
+           (lambda _
+             (invoke "./run_tests")))
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (bin-dir (string-append out "/bin"))
+                    (repo-dir (string-append out "/share/" ,name)))
+               (mkdir-p bin-dir)
+               (mkdir-p repo-dir)
+               (copy-recursively "." repo-dir)
+               (delete-file-recursively (string-append repo-dir "/tests"))
+               (symlink (string-append repo-dir "/repo")
+                        (string-append bin-dir "/repo"))
+               #t))))))
    (inputs
     ;; TODO: Add git-remote-persistent-https once it is available in guix
-     (list git openssh))
-    (native-inputs (list python-pytest python-setuptools))
+     `(("git" ,git)
+       ("ssh" ,openssh)))
+    (native-inputs
+     `(("pytest" ,python-pytest)))
    (home-page "https://code.google.com/p/git-repo/")
    (synopsis "Helps to manage many Git repositories")
-    (description
-     "Repo is a tool built on top of Git.  Repo helps manage many Git
-repositories, does the uploads to revision control systems, and automates
+    (description "Repo is a tool built on top of Git.  Repo helps manage many
+Git repositories, does the uploads to revision control systems, and automates
 parts of the development workflow.  Repo is not meant to replace Git, only to
 make it easier to work with Git.  The repo command is an executable Python
 script that you can put anywhere in your path.")
@@ -41,7 +41,7 @@
 (define-public libapparmor
  (package
    (name "libapparmor")
-    (version "4.1.2")
+    (version "3.1.2")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -50,7 +50,7 @@
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "0p3vq0awvn4ar6sblmhcs0i9m7zc9kbwm3f3zcggx4lqgmy8s18b"))))
+                "1h77a7ww0rxfv5nsi1iy4fffklxdr2vq6r7kdsqm15yysglhbjyi"))))
    (build-system gnu-build-system)
    (arguments
     (list #:configure-flags
@@ -84,7 +84,6 @@
                   (chdir "libraries/libapparmor"))))))
    (native-inputs
     (list autoconf
-           autoconf-archive
           automake
           bison
           dejagnu
@@ -132,7 +132,6 @@
  #:use-module (gnu packages networking)
  #:use-module (gnu packages ninja)
  #:use-module (gnu packages onc-rpc)
-  #:use-module (gnu packages oneapi)
  #:use-module (gnu packages perl)
  #:use-module (gnu packages pkg-config)
  #:use-module (gnu packages pulseaudio)  ;libsndfile, libsamplerate
@@ -152,10 +151,10 @@
  #:use-module (gnu packages serialization)
  #:use-module (gnu packages sphinx)
  #:use-module (gnu packages sqlite)
+  #:use-module (gnu packages tbb)
  #:use-module (gnu packages telephony)
  #:use-module (gnu packages tex)
  #:use-module (gnu packages tls)
-  #:use-module (gnu packages toolkits)
  #:use-module (gnu packages valgrind)
  #:use-module (gnu packages version-control)
  #:use-module (gnu packages video)
@@ -3636,31 +3635,27 @@ cross-platform audio input/output stream library.")
 (define-public python-pulsectl
  (package
    (name "python-pulsectl")
-    (version "24.12.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/mk-fg/python-pulse-control")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1f15w2312j2yc9bs689dvdgq891sjrp5x3q1vf08743px70gxc1m"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:tests? #f ;tests try to communicate with PulseAudio
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'patch-path
-            (lambda* (#:key inputs #:allow-other-keys)
-              (substitute* "pulsectl/_pulsectl.py"
-                (("libpulse.so.0")
-                 (search-input-file inputs "/lib/libpulse.so.0"))))))))
-    (native-inputs (list python-setuptools))
+    (version "24.4.0")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "pulsectl" version))
+              (sha256
+               (base32
+                "0r9igs365cqgrn1m55a8qjz0hc446nwjm3p3i9kphbj5gl7dazk9"))))
+    (build-system python-build-system)
    (inputs (list pulseaudio))
+    (arguments
+     `(#:tests? #f                      ; tests try to communicate with PulseAudio
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'patch-path
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* "pulsectl/_pulsectl.py"
+               (("libpulse.so.0")
+                (string-append (search-input-file inputs "/lib/libpulse.so.0")))))))))
    (home-page "https://github.com/mk-fg/python-pulse-control")
-    (synopsis "Python bindings for mixer-like controls in PulseAudio")
+    (synopsis
+     "Python bindings for mixer-like controls in PulseAudio")
    (description
     "This package provides a Python high-level interface and ctypes-based
 bindings for PulseAudio (libpulse), to use in simple synchronous code.
@@ -3825,21 +3820,16 @@ one-dimensional sample-rate conversion library.")
    (version "0.2.5")
    (source
     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/NFJones/python3-midi")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
+       (method url-fetch)
+       (uri (pypi-uri "python3_midi" version))
       (sha256
-        (base32 "1zihn7n9dr9jjgkjlpad515hhwh22k94irb21ji793sr5crh5s15"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list #:tests? #f))         ; XXX: midi module has not been packaged yet.
-    (native-inputs (list python-setuptools))
+        (base32
+         "1z9j1w7mpn3xhkcpxmqm5rvmj6nffb5rf14bv7n3sdh07nf6n7sf"))))
+    (build-system python-build-system)
    (home-page "https://github.com/NFJones/python3-midi")
    (synopsis "Python MIDI API")
-    (description
-     "This package provides a python API to read and write MIDI files.")
+    (description "This package provides a python API to read and write MIDI
+files.")
    (license license:expat)))

 (define-public python-wavefile
@@ -4329,126 +4319,6 @@ different audio devices such as ALSA or PulseAudio.")
                   (license:non-copyleft
                    "file://src/TPCircularBuffer/README.markdown")))))

-(define-public projectm-eval
-  (package
-    (name "projectm-eval")
-    (version "1.0.5")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/projectM-visualizer/projectm-eval")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "04m5k6azji0fk3japzd8v4k04affbfpangfw4fgvk3ac5w75872a"))))
-    (build-system cmake-build-system)
-    (native-inputs (list googletest))
-    (home-page "https://github.com/projectM-visualizer/projectm-eval")
-    (synopsis "Re-implementation of the NullSoft Expression Evaluation Library")
-    (description "This is an open-source re-implementation of the NullSoft
-Expression Evaluation Library 2, as used in the Milkdrop music visualizer.")
-    (license license:expat)))
-
-(define-public projectm
-  (package
-    (name "projectm")
-    (version "4.1.6")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/projectM-visualizer/projectm")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0yw1q6zmx2683immxfxn2kxjwwv6xk9m6yja701m4z2brhdx1iw1"))))
-    (build-system cmake-build-system)
-    (arguments
-     (list
-      #:configure-flags
-      #~(list
-         "-DBUILD_TESTING=ON" "-DENABLE_SDL_UI=OFF" "-DENABLE_SYSTEM_GLM=ON")))
-    (inputs (list mesa projectm-eval))
-    (native-inputs (list googletest glm))
-    (home-page "https://github.com/projectM-visualizer/projectm")
-    (synopsis "Milkdrop-like music visualizer")
-    (description "projectM is an open-source re-implementation of the MilkDrop
-visualizer.  This package contains only the libprojectm library.")
-    (license license:lgpl2.1+)))
-
-(define-public projectm-presets
-  (let ((commit "0180df21f5e0bd39b9060cc5de420ed2f1f9e509")
-        (revision "0"))
-    (package
-      (name "projectm-presets")
-      (version (git-version "0" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri
-          (git-reference
-            (url "https://github.com/projectM-visualizer/presets-cream-of-the-crop")
-            (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "1g64s6v4xbmx0skiy3ag9889adl8rvwahzd7rmrchiwbd1gap771"))))
-      (build-system copy-build-system)
-      (home-page "https://github.com/projectM-visualizer/presets-cream-of-the-crop")
-      (synopsis "Curated selection of ProjectM/Milkdrop presets")
-      (description "A curated selection of 9,795 ProjectM/Milkdrop presets,
-meant to be included in any projectM-based application.")
-      (license license:public-domain))))
-
-(define-public projectm-sdl
-  (let ((source-commit "72e5632897c9d9bef452c679d3cbe8c7b4bb4157")
-        (revision "0"))
-    (package
-      (name "projectm-sdl")
-      (version (git-version "0" revision source-commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri
-          (git-reference
-            (url "https://github.com/projectM-visualizer/frontend-sdl-cpp")
-            (commit source-commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "14vsjn589lrcwkz0d4528i33aslqsgh7m17kxj0fyd21pwj5n54l"))
-         (modules '((guix build utils)))
-         ;;There are no icon files to install.
-         (snippet #~(substitute* "install.cmake" (("install_icon.+") "")))))
-      (build-system cmake-build-system)
-      (arguments
-       (list #:tests? #f                ;There are no tests.
-             #:phases
-             #~(modify-phases %standard-phases
-                 (add-after 'unpack 'link-imgui
-                   (lambda* (#:key inputs #:allow-other-keys)
-                     (begin (delete-file-recursively "vendor/imgui")
-                            (symlink (assoc-ref %build-inputs "imgui-source")
-                                     "vendor/imgui")))))
-             #:configure-flags
-             #~(list
-                ;; There are texture repositories from both ProjectM and
-                ;; Milkdrop, but their licensing is unclear, so they are not
-                ;; packaged.  ProjectM functions fine with only presets.
-                (string-append "-DDEFAULT_PRESETS_PATH="
-                               (assoc-ref %build-inputs "projectm-presets"))
-                ;; The config location search path can be changed, but the
-                ;; install path stays the same, so only this value works.
-                ;; And without it, only the binary's path is checked.
-                (string-append "-DDEFAULT_CONFIG_PATH="
-                               #$output "/share/projectMSDL/"))))
-      (inputs (list freetype poco projectm projectm-presets sdl2))
-      (native-inputs (list `("imgui-source" ,(package-source imgui))))
-      (home-page "https://github.com/projectM-visualizer/frontend-sdl-cpp")
-      (synopsis "Reference frontend for the libprojectm music visualizer")
-      (description "This is a simple Milkdrop-like music visualizer that uses
-the projectM library to visualize audio input.")
-      (license license:gpl3+)))) ;presets
-
 (define-public qjackctl
  (package
    (name "qjackctl")
@@ -7865,7 +7735,7 @@ and DSD streams.")
 (define-public qpwgraph
  (package
    (name "qpwgraph")
-    (version "0.9.8")
+    (version "0.9.7")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -7874,7 +7744,7 @@ and DSD streams.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "1d45qzjiixjmzjpaa04qvnz69bpf6dhlcq56zrgps507rr413fbx"))))
+                "1j3na9svy0rvz84rl9g2szl3rqxfyi5rqk1i12hdiwnyi6q7ppxi"))))
    (build-system cmake-build-system)
    (arguments
     (list #:tests? #f))                ; no tests
@@ -8083,7 +7953,7 @@ verifies checksums.")
           pipewire
           rnnoise
           speexdsp
-           onetbb
+           tbb
           zita-convolver
           soundtouch))
    ;; Propagating these allows EasyEffects to find the plugins via their
@@ -2039,7 +2039,7 @@ CONFIG_SCSI_LOWLEVEL=y
 # CONFIG_SCSI_DEBUG is not set
 # CONFIG_SCSI_PMCRAID is not set
 # CONFIG_SCSI_PM8001 is not set
-CONFIG_SCSI_VIRTIO=m
+# CONFIG_SCSI_VIRTIO is not set
 # CONFIG_SCSI_DH is not set
 # end of SCSI device support

@@ -21,7 +21,7 @@
 ;;; Copyright © 2021 Timothy Sample <samplet@ngyro.com>
 ;;; Copyright © 2021 Brice Waegeneire <brice@waegenei.re>
 ;;; Copyright © 2021 Sarah Morgensen <iskarian@mgsn.dev>
-;;; Copyright © 2022, 2025 Maxim Cournoyer <maxim@guixotic.coop>
+;;; Copyright © 2022 Maxim Cournoyer <maxim@guixotic.coop>
 ;;; Copyright © 2022 Feng Shu <tumashu@163.com>
 ;;; Copyright © 2023 Timo Wilken <guix@twilken.net>
 ;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
@@ -140,7 +140,7 @@
           tzdata-for-tests
           python-mock))
    (propagated-inputs
-     (list python-pygobject python-urllib3))
+     (list python-lockfile python-pygobject python-urllib3))
    (inputs
     (list bash-minimal ; to run the wrapped program
           dbus ; dbus-launch (Gio backend)
@@ -357,62 +357,6 @@ random access nor for in-place modification.  This package provides the
@command{bsdcat}, @command{bsdcpio} and @command{bsdtar} commands.")
    (license license:bsd-2)))

-;;; TODO: core update (20k rebuilds).
-(define-public libarchive-next
-  (package
-    (inherit libarchive)
-    (name "libarchive")
-    (version "3.8.4")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (list (string-append "https://libarchive.org/downloads/libarchive-"
-                                 version ".tar.xz")
-                  (string-append "https://github.com/libarchive/libarchive"
-                                 "/releases/download/v" version "/libarchive-"
-                                 version ".tar.xz")))
-       (sha256
-        (base32
-         "0wxdr7qws1z1b1gp5jsm7n2ccnjlmrnds52d5wc5xkzagyslgf67"))))
-    (arguments
-     (substitute-keyword-arguments (package-arguments libarchive)
-       ((#:phases phases)
-        #~(modify-phases #$phases
-            (delete 'patch-pwd)
-            (add-before 'build 'patch-commands
-              (lambda _
-                (substitute* "Makefile"
-                  (("/bin/pwd") (which "pwd")))
-                (substitute* "test_utils/test_main.c"
-                  (("/bin/sh") (which "sh")))))
-            (replace 'check
-              (lambda* (#:key parallel-build? tests? #:allow-other-keys)
-                (if tests?
-                    (begin
-                      ;; These environment variables are taken from
-                      ;; <https://raw.githubusercontent.com/libarchive/libarchive/refs/heads/master/.github/workflows/ci.yml>
-                      (setenv "SKIP_OPEN_FD_ERR_TEST" "1")
-                      (setenv "IGNORE_TRAVERSALS_TEST4" "1")
-
-		      ;; XXX: The test_owner_parse, test_read_disk, and
-		      ;; test_write_disk_lookup tests expect user 'root' to
-		      ;; exist, but the chroot's /etc/passwd doesn't have it
-		      ;; (see:
-		      ;; <https://github.com/libarchive/libarchive/issues/2794>).
-		      (invoke "make" "-j" (number->string
-                                           (if parallel-build?
-                                               (parallel-job-count)
-                                               1))
-			      "libarchive_test"
-			      "bsdcpio_test"
-			      "bsdtar_test")
-		      ;; XXX: This glob disables too much.
-		      (invoke "./libarchive_test" "^test_*_disk*")
-		      (invoke "./bsdcpio_test" "^test_owner_parse")
-		      (invoke "./bsdtar_test"))
-                    ;; Tests may be disabled if cross-compiling.
-                    (format #t "Test suite not run.~%"))))))))))
-
 (define-public rdup
  (package
    (name "rdup")
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2015-2026 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015-2025 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2016, 2017, 2018, 2020, 2021 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2016 Pjotr Prins <pjotr.guix@thebird.nl>
 ;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
@@ -716,14 +716,14 @@ sapiens @code{dbSNP} build 131.")
 (define-public r-reactome-db
  (package
    (name "r-reactome-db")
-    (version "1.95.0")
+    (version "1.94.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "reactome.db" version 'annotation))
       (sha256
        (base32
-         "1b87byr45cmqa7jyd5fw3askmrzfhdljjp2d7jcmm88baf45mfg6"))))
+         "0a6gx6iss43innhkhydqmv4jpnwkkjfdl32zxr4kjvm57xb2k4p0"))))
    (properties `((upstream-name . "reactome.db")))
    (build-system r-build-system)
    (propagated-inputs
@@ -3406,14 +3406,14 @@ the @code{HorvathMethylChip40} (Mammal40) array.")
 (define-public r-systempiperdata
  (package
    (name "r-systempiperdata")
-    (version "2.14.2")
+    (version "2.14.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "systemPipeRdata" version
                              'experiment))
       (sha256
-        (base32 "0qqkdrqvr0wic1hwrmhd6024w83gs66pdp0mc876qc68mv26nzwb"))))
+        (base32 "10q3dj16pkjdmqhxqfi255sszh7y1k6yw7j77n0gbh5223ay4zgw"))))
    (properties `((upstream-name . "systemPipeRdata")))
    (build-system r-build-system)
    (propagated-inputs (list r-biocgenerics r-biostrings r-jsonlite r-remotes))
@@ -4639,13 +4639,13 @@ for use in Bioconductor’s AnnotationHub.")
 (define-public r-anvil
  (package
    (name "r-anvil")
-    (version "1.22.3")
+    (version "1.22.0")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "AnVIL" version))
              (sha256
               (base32
-                "0na8m3d2svrcblz8xzwb560sar39anx1bp0i787rw9sk23f2kwrc"))))
+                "08r41q8zb72kbfslw851152h4k2q7jzkk0d85d6rmvdd3r1qd9bw"))))
    (properties `((upstream-name . "AnVIL")))
    (build-system r-build-system)
    ;; Tests require Internet access.
@@ -5504,13 +5504,13 @@ cohorts of interdependent C++ libraries.")
 (define-public r-atena
  (package
    (name "r-atena")
-    (version "1.16.1")
+    (version "1.16.0")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "atena" version))
              (sha256
               (base32
-                "1wqgyk256d1dg4a9d9wwyfzw2my3sidjjgg0gmvnyfx8hrxav82g"))))
+                "02jbsk6inh63pcsandwik8cc0dd1q30raddkgxs7pszwlkdk1q73"))))
    (properties `((upstream-name . "atena")))
    (build-system r-build-system)
    (propagated-inputs
@@ -6418,13 +6418,13 @@ how the coverage distributed across the genome.")
 (define-public r-cpp11bigwig
  (package
    (name "r-cpp11bigwig")
-    (version "0.1.3")
+    (version "0.1.2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "cpp11bigwig" version))
       (sha256
-        (base32 "0p6s8h4a8a1j367iiq2n01bl6f6aijsli9lbm0k98hzfw8bqgdqk"))))
+        (base32 "0r8z8d1vsll2sdczcc982iqzilc2cph56jkm1va72mq8yds5pc5a"))))
    (properties
     '((upstream-name . "cpp11bigwig")
       (updater-extra-inputs . ("curl"))))
@@ -7470,13 +7470,13 @@ dynamic documents and vignettes.")
 (define-public r-escape
  (package
    (name "r-escape")
-    (version "2.6.2")
+    (version "2.6.1")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "escape" version))
       (sha256
-        (base32 "1siimy3qsyjw6in2x2kf07ilyglamcq79n9lcysq755k1g2pz689"))))
+        (base32 "0cq6xlfvmxs3c6923ck3ipx1k6yh9kna3fnfahdsxb4b17hsrhzv"))))
    (properties
     '((upstream-name . "escape")
       (updater-extra-native-inputs
@@ -7585,13 +7585,13 @@ arbitrary genomic intervals along chromosomal ideogram.")
 (define-public r-immapex
  (package
    (name "r-immapex")
-    (version "1.4.3")
+    (version "1.4.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "immApex" version))
       (sha256
-        (base32 "0hv342gn73y6rzdjmzyv1kwp8gbazqbcnzwh8iz69x57kx94mmvj"))))
+        (base32 "0xwj70fgfhqilc4clm54lj7h1q1742339z44nwbl1sjh049x388f"))))
    (properties `((upstream-name . "immApex")))
    (build-system r-build-system)
    (arguments
@@ -8015,13 +8015,13 @@ objects can be used within Nebulosa.")
 (define-public r-netgsa
  (package
    (name "r-netgsa")
-    (version "4.0.7")
+    (version "4.0.6")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "netgsa" version))
       (sha256
-        (base32 "0a38gg33h5qmihg61jh8lpckzhp7yrbgsdn8lqk7j0gcp5fc3ylv"))))
+        (base32 "0zdj464mlhm71cwgn6jhzb6nrpnwy6php7gifgzag7pin9zh0l5y"))))
    (properties `((upstream-name . "netgsa")))
    (build-system r-build-system)
    (propagated-inputs (list r-annotationdbi
@@ -8038,6 +8038,7 @@ objects can be used within Nebulosa.")
                             r-magrittr
                             r-matrix
                             r-msigdbr
+                             r-org-hs-eg-db
                             r-quadprog
                             r-rcpp
                             r-rcppeigen
@@ -9484,13 +9485,13 @@ global-scaling and full-quantile normalization.")
 (define-public r-edger
  (package
    (name "r-edger")
-    (version "4.8.2")
+    (version "4.8.0")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "edgeR" version))
              (sha256
               (base32
-                "190dfvj5xfldiqppyqw1f0xxrjmg1wdsw32fn40k0yf55zrm256w"))))
+                "0r0384f1kxx861diwrwrrqqy0jv0qyc06rfhwl0x1m4lahcb3sk3"))))
    (properties `((upstream-name . "edgeR")))
    (build-system r-build-system)
    (propagated-inputs
@@ -9510,16 +9511,16 @@ CAGE.")
 (define-public r-enhancedvolcano
  (package
    (name "r-enhancedvolcano")
-    (version "1.28.2")
+    (version "1.26.0")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "EnhancedVolcano" version))
              (sha256
               (base32
-                "0gsanshy8ryg67xpfhysv0f6dax2niblz4qrakkcq5ki2l1d6dpw"))))
+                "19dxqk5dk9443a3949y3b2dhcphhn2lvi6fvlakqxll2lvhjqivi"))))
    (properties `((upstream-name . "EnhancedVolcano")))
    (build-system r-build-system)
-    (propagated-inputs (list r-ggplot2 r-ggrepel r-scales))
+    (propagated-inputs (list r-ggplot2 r-ggrepel))
    (native-inputs (list r-biocgenerics r-knitr r-runit))
    (home-page "https://github.com/kevinblighe/EnhancedVolcano")
    (synopsis
@@ -9848,13 +9849,13 @@ genomic intervals.  In addition, it can use BAM or BigWig files as input.")
 (define-public r-genomeinfodb
  (package
    (name "r-genomeinfodb")
-    (version "1.46.2")
+    (version "1.46.0")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "GenomeInfoDb" version))
              (sha256
               (base32
-                "1akwckiya3nv0j193h2nilg3240v3anrvvzjzqcnwwdiqvmsl68n"))))
+                "03mxzpz9pwhmg63is4pn5gbrkcphfj9nyzdpxymhy9s8nv3hzfd9"))))
    (properties
     '((upstream-name . "GenomeInfoDb")
       (updater-ignored-native-inputs
@@ -10057,13 +10058,13 @@ provide added flexibility for data combination and manipulation.")
 (define-public r-genomicranges
  (package
    (name "r-genomicranges")
-    (version "1.62.1")
+    (version "1.62.0")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "GenomicRanges" version))
              (sha256
               (base32
-                "1mf5gcd33i65blgmihd1m48y32x14l8jxmihps2763i8vivipz30"))))
+                "0wsbl49c542k107cgczsw5dynnrrwk9hslks229zpvxlcvapmivv"))))
    (properties
     `((upstream-name . "GenomicRanges")
       (updater-extra-native-inputs . ("r-runit"))
@@ -10259,13 +10260,13 @@ Enrichment Analysis} (GSEA).")
 (define-public r-gsva
  (package
    (name "r-gsva")
-    (version "2.4.4")
+    (version "2.4.1")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "GSVA" version))
              (sha256
               (base32
-                "1rvzy8rx3pxy4slmmbrzydgwv3w6pjfvgz8xnwkm7zl18ik1y3h6"))))
+                "0axpdds05vmrbpixdbp50a84rj93cm9cx56y10giknwljsa7zqfm"))))
    (properties `((upstream-name . "GSVA")))
    (build-system r-build-system)
    (propagated-inputs (list r-biobase
@@ -10274,12 +10275,12 @@ Enrichment Analysis} (GSEA).")
                             r-biocsingular
                             r-cli
                             r-delayedarray
+                             r-delayedmatrixstats
                             r-gseabase
                             r-hdf5array
                             r-iranges
                             r-matrix
                             r-matrixgenerics
-                             r-memuse
                             r-s4arrays
                             r-s4vectors
                             r-singlecellexperiment
@@ -10578,36 +10579,6 @@ from a @code{GRangesList} representation and provides a semblance of a
 rectangular dataset.")
    (license license:artistic2.0)))

-(define-public r-rarr
-  (package
-    (name "r-rarr")
-    (version "1.10.1")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (bioconductor-uri "Rarr" version))
-       (sha256
-        (base32 "1j7zpz0fb996yywvrqbnw67p8a2m4y77kx6ijq7wgald6qg0y1v1"))))
-    (properties `((upstream-name . "Rarr")))
-    (build-system r-build-system)
-    (inputs (list zlib))
-    (propagated-inputs (list r-biocgenerics
-                             r-curl
-                             r-delayedarray
-                             r-jsonlite
-                             r-paws-storage
-                             r-r-utils))
-    (native-inputs (list r-knitr r-testthat r-withr))
-    (home-page "https://huber-group-embl.github.io/Rarr/")
-    (synopsis "Read Zarr files in R")
-    (description
-     "The Zarr specification defines a format for chunked, compressed,
-N-dimensional arrays.  Its design allows efficient access to subsets of the
-stored array, and supports both local and cloud storage systems.  Rarr aims to
-implement this specification in R with minimal reliance on external tools or
-libraries.")
-    (license license:expat)))
-
 (define-public r-rdisop
  (package
    (name "r-rdisop")
@@ -11979,12 +11950,7 @@ of mass spectrometry based proteomics data.")
      '(modify-phases %standard-phases
         ;; Needed for r-r-cache
         (add-after 'unpack 'set-HOME
-           (lambda _ (setenv "HOME" "/tmp")))
-         (add-after 'unpack 'disable-bad-tests
-           (lambda _
-             ;; This checks for a file hash.
-             (substitute* "inst/unitTests/test_data_load.R"
-               (("test_data_load_mzR") "skip_test_data_load_mzR")))))))
+           (lambda _ (setenv "HOME" "/tmp"))))))
    (propagated-inputs
     (list r-annotationdbi
           r-annotationhub
@@ -12790,13 +12756,13 @@ library implementing most of the pipeline's features.")
 (define-public r-rcy3
  (package
    (name "r-rcy3")
-    (version "2.30.1")
+    (version "2.30.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "RCy3" version))
       (sha256
-        (base32 "09bqpmahrrcvychx1mjqrb1zf9z45dpr5vv6nbnp9v67yy6qbzlf"))))
+        (base32 "1xc19lvdz6yyg2844j83idv64adfrw1bkpiazd4w39xa46l46lck"))))
    (properties `((upstream-name . "RCy3")))
    (build-system r-build-system)
    (propagated-inputs (list r-base64enc
@@ -13002,13 +12968,13 @@ browser.")
 (define-public r-rhdf5
  (package
    (name "r-rhdf5")
-    (version "2.54.1")
+    (version "2.54.0")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "rhdf5" version))
              (sha256
               (base32
-                "1brp806vagja149w6faldir5vfcrlvhqdakb3q5crr5wxfqp7qk5"))))
+                "1psfaqha2sflpp0sm0j3wcxscxb9490pbck69izrsfrrg75jbf7n"))))
    (build-system r-build-system)
    (arguments
     (list
@@ -13263,13 +13229,13 @@ pre-processed data.")
 (define-public r-rtracklayer
  (package
    (name "r-rtracklayer")
-    (version "1.70.1")
+    (version "1.70.0")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "rtracklayer" version))
              (sha256
               (base32
-                "0g43xcps4jajrvwbn5ky8rb4yax8kywjqx5xl8syjiyv1jjqbd08"))))
+                "1i9yx0ngx97lmw7pcdj89da6bb0w6gpc98mrwy9prlmml78d81dn"))))
    (properties
     '((updater-ignored-native-inputs
        . ("r-bsgenome-hsapiens-ucsc-hg19"
@@ -13597,13 +13563,13 @@ different experiment.")
 (define-public r-screpertoire
  (package
    (name "r-screpertoire")
-    (version "2.6.2")
+    (version "2.5.8")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "scRepertoire" version))
       (sha256
-        (base32 "1n8vdia8bsxikl3vfsnafz1i04qn4kqcrchjrbkzrskbl28mkzq5"))))
+        (base32 "0ijycpmaivcqqmdc90h5jx8rcwg9112pl2mdpms1hgvww70x3s6w"))))
    (properties
     '((upstream-name . "scRepertoire")))
    (build-system r-build-system)
@@ -13619,14 +13585,14 @@ different experiment.")
                (string-append m "skip('guix')\n"))
               ((".*getContigDoublets works for inputs with doublets.*" m)
                (string-append m "skip('guix')\n")))
+             (substitute* "tests/testthat/test-combineContigs.R"
+               ((".*combineBCR works.*" m)
+                (string-append m "skip('guix')\n")))
             (substitute* "tests/testthat/test-loadContigs.R"
               ((".*loadContigs correctly auto-detects and processes various formats.*" m)
                (string-append m "skip('guix')\n"))
               ((".*loadContigs correctly processes various formats from URL.*" m)
                (string-append m "skip('guix')\n")))
-             ;; There is code running outside of testthat that tries to
-             ;; download files off the Internet.
-             (delete-file "tests/testthat/test-combineContigs.R")
             ;; These fail with: Unknown property set: 'kideraFactors'.
             (substitute* "tests/testthat/test-positionalProperty.R"
               ((".*positionalProperty: Output structure is correct.*" m)
@@ -13866,13 +13832,13 @@ reference point and sorted by a user defined feature.")
 (define-public r-sesame
  (package
    (name "r-sesame")
-    (version "1.28.1")
+    (version "1.28.0")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "sesame" version))
              (sha256
               (base32
-                "0nfaw8fkszrw0z7fjsxa1qng1cajsqp90k9jhf00j7pb1b0m3wch"))))
+                "0268p9yvzsnrjjbmbyqzhz9vnc6227200639kyn7yi2daa6fkzav"))))
    (properties `((upstream-name . "sesame")))
    (build-system r-build-system)
    ;; Tests use ExperimentHub, so needs Internet access.
@@ -14144,13 +14110,13 @@ level.")
 (define-public r-tcgautils
  (package
    (name "r-tcgautils")
-    (version "1.30.2")
+    (version "1.30.1")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "TCGAutils" version))
              (sha256
               (base32
-                "1zwzx7mfp4s0v1rdjsyxj4l9w360g4qm3am8yf5lsd0biciqqh93"))))
+                "1dc5d3ag89jl3dnajqwy92ih1fzzzmmx8r9a14g59fpc9wx5z7fm"))))
    (properties `((upstream-name . "TCGAutils")))
    (build-system r-build-system)
    (arguments
@@ -14315,13 +14281,13 @@ methylation data.")
 (define-public r-transcriptr
  (package
    (name "r-transcriptr")
-    (version "1.38.3")
+    (version "1.37.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "transcriptR" version))
       (sha256
-        (base32 "08m2wdxwv0d9np40hg7p1bnx9lw6944hyjf2a72k5jd6d26d7qgj"))))
+        (base32 "18gxiwl1i5v10rxdprnpjylx57p2zfgpm5akb2vn7mzj24n4fhh3"))))
    (properties
     '((upstream-name . "transcriptR")
       (updater-ignored-native-inputs
@@ -14345,6 +14311,7 @@ methylation data.")
     (list r-biocgenerics
           r-caret
           r-chipseq
+           r-e1071
           r-genomeinfodb
           r-genomicalignments
           r-genomicfeatures
@@ -14584,13 +14551,13 @@ tools either included in speaq or available elsewhere on CRAN.")
 (define-public r-spectra
  (package
    (name "r-spectra")
-    (version "1.20.1")
+    (version "1.20.0")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "Spectra" version))
              (sha256
               (base32
-                "0qxil7dinx9kwm7zhzk5s0aa3kn3svkx30inqcnzpa1hyxslrzgg"))))
+                "0ajaxgsvg6aav2l74zmar76pwbjnrzd5sv8xv20v3jdcnwq33ghw"))))
    (properties
     '((upstream-name . "Spectra")
       ;; Avoid dependency cycle.
@@ -14869,14 +14836,14 @@ unmodeled, or latent sources of noise.")
 (define-public r-systempiper
  (package
    (name "r-systempiper")
-    (version "2.16.3")
+    (version "2.16.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "systemPipeR" version))
       (sha256
        (base32
-         "0maixi0hwqzkpiq60hf60x4q3gv3hkvmrqh3ygv0fk63g1k9f6cj"))))
+         "1mpwjz0r5cy2r5745b4splygg6jycfnfrqrca9vqic3bnpsrc6gf"))))
    (properties `((upstream-name . "systemPipeR")))
    (build-system r-build-system)
    ;; Tests fail because genWorkenvir fails to set up the environment.
@@ -14954,16 +14921,16 @@ dependencies between GO terms can be implemented and applied.")
 (define-public r-txdbmaker
  (package
    (name "r-txdbmaker")
-    (version "1.6.2")
+    (version "1.6.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "txdbmaker" version))
       (sha256
-        (base32 "0m84qprk6z4ggj8qsds4lj2gbrvs0mvq63sg5f7i4m2kfawc5qpw"))))
+        (base32 "0rczknnbccc2vlbs0mkv89fqmr1myxjba12dvvyqfpnh7pcxfihp"))))
    (properties
     '((upstream-name . "txdbmaker")
-       (updater-extra-native-inputs . ("r-genomeinfodbdata" "r-runit"))))
+       (updater-extra-native-inputs . ("r-runit"))))
    (build-system r-build-system)
    (arguments
     (list
@@ -15008,13 +14975,13 @@ convenient formats.")
 (define-public r-tximport
  (package
    (name "r-tximport")
-    (version "1.38.2")
+    (version "1.38.1")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "tximport" version))
              (sha256
               (base32
-                "06kz3fq2hh23z41vn7vb369y2xrkj77q9l0h5zjs94f4qp9fpsh6"))))
+                "1r07xnks4byp5hr51gq1j04bdrkb0axhi0bbhjpzbvgyc3fj67i3"))))
    (properties
     '((updater-extra-native-inputs
        . ("r-matrix" "r-rhdf5"))))
@@ -15045,29 +15012,29 @@ of gene-level counts.")
 (define-public r-valr
  (package
    (name "r-valr")
-    (version "0.9.1")
+    (version "0.8.4")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "valr" version))
       (sha256
        (base32
-         "1f0q7c8mz7w2ih5m3bfb0g5y9lx5lmn1ifj234k75ksffwwi4lz9"))))
+         "138s6ydqhhik0ymfby9sdnpyjj56m98yqav4vmgv619fhialyx0y"))))
    (build-system r-build-system)
    (propagated-inputs
     (list r-broom
           r-cli
-           r-cpp11
           r-cpp11bigwig
           r-dplyr
           r-ggplot2
           r-lifecycle
+           r-rcpp
           r-readr
           r-rlang
           r-stringr
           r-tibble))
    (native-inputs
-     (list r-knitr r-testthat))
+     (list r-knitr r-testthat r-vdiffr))
    (home-page "https://github.com/rnabioco/valr")
    (synopsis "Genome interval arithmetic in R")
    (description
@@ -15367,13 +15334,13 @@ libraries for systems that do not have these available via other means.")
 (define-public r-zellkonverter
  (package
    (name "r-zellkonverter")
-    (version "1.20.1")
+    (version "1.20.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "zellkonverter" version))
       (sha256
-        (base32 "1si2g69l4scgkfrgas7fj6klj1rn1bcnch9panv564nyvkfrlmmv"))))
+        (base32 "1w9kkx5qxskkxmq5y0x58pim5n9i4hms5mhm6y2n58qd1ja2qap2"))))
    (properties `((upstream-name . "zellkonverter")))
    (build-system r-build-system)
    ;; This uses r-basilisk, which attempts to set up a Conda environment.
@@ -15966,13 +15933,13 @@ expressed genes in DNA microarray experiments.")
 (define-public r-graph
  (package
    (name "r-graph")
-    (version "1.88.1")
+    (version "1.88.0")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "graph" version))
              (sha256
               (base32
-                "0l4gsrb1s9dc0yq6cawb8bpci0byhxmvfhrp9q8gxhvn8asxh6zb"))))
+                "1sxn2h83j3qawp9jwpg63g50px2gk5dmlmdy6a7jwx3hb44sppbm"))))
    (properties '((updater-extra-native-inputs . ("r-xml"))))
    (build-system r-build-system)
    (arguments
@@ -17227,14 +17194,14 @@ data.")
 (define-public r-ggtree
  (package
    (name "r-ggtree")
-    (version "4.0.4")
+    (version "4.0.1")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "ggtree" version))
       (sha256
        (base32
-         "1qi5nispv0cirfayijybnn1nr8l6sb2adnic3y37qm3yv91w6s6z"))))
+         "0vk1l1jmw4acgmpmgcx0pz7j39yp391mba8q1xnc8rmlfw51qvxj"))))
    (properties `((upstream-name . "ggtree")))
    (build-system r-build-system)
    (propagated-inputs
@@ -18548,37 +18515,23 @@ standardization of the analyses and the development of best practices.")
 (define-public r-microbiomestat
  (package
    (name "r-microbiomestat")
-    (version "1.3")
+    (version "1.2")
    (source (origin
              (method url-fetch)
              (uri (cran-uri "MicrobiomeStat" version))
              (sha256
               (base32
-                "02xg8l4d0z5wrdrm5dj5a0q51vsbhf3f6z2lk8294c4d85s09dhl"))))
-    (properties
-     '((upstream-name . "MicrobiomeStat")
-       (updater-extra-inputs . ("nlopt"))
-       (updater-extra-native-inputs . ("pkg-config"))))
+                "1kpc68sl63k104xy7r6f3gxan0yx0rs7ksn8ldbq8xla00ddflgq"))))
+    (properties `((upstream-name . "MicrobiomeStat")))
    (build-system r-build-system)
-    (inputs (list nlopt))
-    (native-inputs (list pkg-config))
-    (propagated-inputs (list r-bbmisc
-                             r-dplyr
-                             r-foreach
+    (propagated-inputs (list r-foreach
                             r-ggplot2
                             r-ggrepel
-                             r-lhs
                             r-lmertest
                             r-mass
                             r-matrix
                             r-matrixstats
-                             r-mlr
-                             r-mlrmbo
                             r-modeest
-                             r-paramhelpers
-                             r-rcpp
-                             r-rcpparmadillo
-                             r-smoof
                             r-statmod))
    (home-page "https://cran.r-project.org/package=MicrobiomeStat")
    (synopsis "Statistical methods for microbiome compositional data")
@@ -19001,14 +18954,14 @@ surface of a flowcell.")
 (define-public r-mutoss
  (package
    (name "r-mutoss")
-    (version "0.1-14")
+    (version "0.1-13")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "mutoss" version))
       (sha256
        (base32
-         "1gswlg6n2pz1z8gyap6syggvyv3bfzr5kmxcwimhbixm36xzfkhz"))))
+         "0hgi9wpy3ai23dk6cdba6r118vvmgw210racsg3n1p24rv6ny3xn"))))
    (properties `((upstream-name . "mutoss")))
    (build-system r-build-system)
    (propagated-inputs
@@ -19028,14 +18981,14 @@ are standardized and usable by the accompanying mutossGUI package.")
 (define-public r-metap
  (package
    (name "r-metap")
-    (version "1.13")
+    (version "1.12")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "metap" version))
       (sha256
        (base32
-         "02vn6gb39il341nc10arx81bfhzsqy6gd3sc6la4lyfa5r1ysncl"))))
+         "0icrk4krmzgawpzf80rm82x2lvxdqlvjz91v0n3p4j4hy041yrbc"))))
    (build-system r-build-system)
    (propagated-inputs
     (list r-lattice
@@ -19380,14 +19333,14 @@ presence of additional sites within the allowed window size.")
 (define-public r-fgsea
  (package
    (name "r-fgsea")
-    (version "1.36.2")
+    (version "1.36.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "fgsea" version))
       (sha256
        (base32
-         "0njza9d0g7ybzxqmsdbhikl1w7g94amvld5n2yvn7lqh0ksnz6fn"))))
+         "040z8k28zg9rlvlrywp1ah39pcll74jdmfzhy2r7rijmmvw8ypip"))))
    (build-system r-build-system)
    (propagated-inputs
     (list r-bh
@@ -19482,14 +19435,14 @@ correspondence between different data sources.")
 (define-public r-enrichplot
  (package
    (name "r-enrichplot")
-    (version "1.30.4")
+    (version "1.30.3")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "enrichplot" version))
       (sha256
        (base32
-         "080q91ll8rvqf93hcmxc7kjbmmihyh0vrpxck2pqrwglbqxm4xll"))))
+         "04dyxwlry1nqihi1s6h3j1dxn2wh8sip16s82lk0jrsfjr07c2mz"))))
    (build-system r-build-system)
    (propagated-inputs
     (list r-aplot
@@ -19502,13 +19455,13 @@ correspondence between different data sources.")
           r-ggtree
           r-gosemsim
           r-igraph
+           r-magrittr
           r-plyr
           r-purrr
           r-rcolorbrewer
           r-reshape2
           r-rlang
           r-scatterpie
-           r-tidydr
           r-yulab-utils))
    (native-inputs
     (list r-knitr))
@@ -19550,14 +19503,14 @@ attempts to assess their statistical significance.")
 (define-public r-clusterprofiler
  (package
    (name "r-clusterprofiler")
-    (version "4.18.4")
+    (version "4.18.2")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "clusterProfiler" version))
       (sha256
        (base32
-         "00kd5zmzd9pm0mxd2r95l7j4mvqgnbbkaqs2rb5fh06r3rk2c14p"))))
+         "0m26gbiaff72jivvk6ncgrd4mhq5y0asc7mnjn1qqrba4k63x9nr"))))
    (properties
     '((upstream-name . "clusterProfiler")
       (updater-extra-native-inputs . ("r-org-hs-eg-db"))))
@@ -20625,14 +20578,14 @@ decomposition algorithms.")
 (define-public r-yapsa
  (package
    (name "r-yapsa")
-    (version "1.36.1")
+    (version "1.36.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "YAPSA" version))
       (sha256
        (base32
-         "0anx6jd3vjj4bi3dzaygd6xvb26yfpmssfcl7rfnv4fv1h5hsyl7"))))
+         "0i6s8vhk8ar62g9fzn5zr76w94i11qy7g7gfbbk3kmvg3g4rrj4c"))))
    (properties `((upstream-name . "YAPSA")))
    (build-system r-build-system)
    (propagated-inputs
@@ -20985,13 +20938,13 @@ data for high-throughput, untargeted analyte profiling.")
 (define-public r-wppi
  (package
    (name "r-wppi")
-    (version "1.18.0")
+    (version "1.16.0")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "wppi" version))
              (sha256
               (base32
-                "1q3745vxarns4kp069ga8nilfz21i0rmaxbllxcys3rvwc7jr77d"))))
+                "17rkfbhy0r22ayca4c7n8gr2kjgbj3r4gk1rh423cp566x0n7pcp"))))
    (properties `((upstream-name . "wppi")))
    (build-system r-build-system)
    ;; This is necessary because omnipathr attempts to write a configuration
@@ -21796,13 +21749,13 @@ and to both short and long sequence reads.")
 (define-public r-flames
  (package
    (name "r-flames")
-    (version "2.4.2")
+    (version "2.4.1")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "FLAMES" version))
       (sha256
-        (base32 "1w9z79w3jm6piijyhqfgx7m7zldq9f6q161h92idxn5aw3my1c18"))
+        (base32 "1ls28dc01bm0bmf304ybgy8w89q2wwccf9krk44cn0bhynm7bsq4"))
       (modules '((guix build utils)))
       (snippet
        '(delete-file-recursively "src/submodule/minimap2"))))
@@ -22053,14 +22006,14 @@ interact with gated cytometry data.")
 (define-public r-flowcore
  (package
    (name "r-flowcore")
-    (version "2.22.1")
+    (version "2.22.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "flowCore" version))
       (sha256
        (base32
-         "19arbmdhdk41ayd2pyaizcq8w3s125nh5wb71v80g5800jbaqkis"))))
+         "0rmlff8d36z8d59s9w4va0csdklz6vkl8k0ywyg6rgmg5k327jqd"))))
    (properties
     '((upstream-name . "flowCore")
       (updater-ignored-native-inputs
@@ -22158,14 +22111,14 @@ manipulation of flow cytometry data.")
 (define-public r-ggcyto
  (package
    (name "r-ggcyto")
-    (version "1.38.1")
+    (version "1.38.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "ggcyto" version))
       (sha256
        (base32
-         "13yg17hn6f6gsfr44gkm6rx0p1d0lvhp8rywyhpby4ckqzw6xwxb"))))
+         "0gpqwg8f2pwb9z9rjdmiy6x60zry2wwlf5xq44scv5dm6l2jfapw"))))
    (properties
     `((upstream-name . "ggcyto")
       ;; Avoid dependency cycle.
@@ -22316,14 +22269,14 @@ for other R packages to compile and link against.")
 (define-public r-flowworkspace
  (package
    (name "r-flowworkspace")
-    (version "4.22.1")
+    (version "4.22.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "flowWorkspace" version))
       (sha256
        (base32
-         "05d2xz9y8w1q4zgfmqm6drlgyfrnl2q2b42x7mgfzsva36dgnv0f"))))
+         "1hy44nyhgk8z85lis8nz1djsma4wyanixibs7qds0xgimk5r9qqq"))))
    (properties
     `((upstream-name . "flowWorkspace")
       ;; Avoid dependency cycles.
@@ -23373,14 +23326,14 @@ populations, splice site strength, conservation, etc.")
 (define-public r-variancepartition
  (package
    (name "r-variancepartition")
-    (version "1.40.1")
+    (version "1.40.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "variancePartition" version))
       (sha256
        (base32
-         "1xqy4jl8im7i4kd4iwn8hvhy172fzsadyn90kprihmvccmpd5cr3"))))
+         "0inwnrk6jppjfmsin7zjlfg250y7q7049x5nis2xqn559pfls37s"))))
    (properties
     '((upstream-name . "variancePartition")
       (updater-extra-native-inputs . ("r-rfast"))))
@@ -23403,7 +23356,6 @@ populations, splice site strength, conservation, etc.")
           r-matrixstats
           r-pbkrtest
           r-rdpack
-           r-reformulas
           r-remacor
           r-reshape2
           r-rhpcblasctl
@@ -23492,13 +23444,13 @@ directly interact with SingleCellExperiment and Seurat objects.")
 (define-public r-ucsc-utils
  (package
    (name "r-ucsc-utils")
-    (version "1.6.1")
+    (version "1.6.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "UCSC.utils" version))
       (sha256
-        (base32 "14j337wylpxkx4k1fi3f7p5fs1xy538jmzha2fqcwfx75h3x0v75"))))
+        (base32 "0ylb4d3bsl859609b4wsclhhv2zrvhkcr25q5mv6ywyvppri3j1y"))))
    (properties `((upstream-name . "UCSC.utils")))
    (build-system r-build-system)
    ;; Tests require Internet access.
@@ -24484,13 +24436,13 @@ monograph.")
 (define-public r-bioccheck
  (package
    (name "r-bioccheck")
-    (version "1.46.3")
+    (version "1.46.0")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "BiocCheck" version))
              (sha256
               (base32
-                "1ygspnxj1jqx4mk3b26ff4k6h47spdq6y8a4nh1dgdrqk2wrx0ic"))))
+                "0fb114cdk8xl9r4kgvril4b8zw082f32mdrxwk564byz5r5r41cl"))))
    (properties
     `((upstream-name . "BiocCheck")))
    (build-system r-build-system)
@@ -25015,14 +24967,14 @@ distance measures.")
 (define-public r-pcatools
  (package
    (name "r-pcatools")
-    (version "2.22.1")
+    (version "2.20.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "PCAtools" version))
       (sha256
        (base32
-         "1ngm3227viafcjmq5c25ihj3lrrs98c1rs5zx2ims6xzv68dbzwz"))))
+         "0jik25f4rpmr8gjy22i2myjhgsgqgslfjfskhv5bgkmqwbn931ar"))))
    (properties `((upstream-name . "PCAtools")))
    (build-system r-build-system)
    (propagated-inputs
@@ -25298,13 +25250,13 @@ routines.")
 (define-public r-s4arrays
  (package
    (name "r-s4arrays")
-    (version "1.10.1")
+    (version "1.10.0")
    (source (origin
              (method url-fetch)
              (uri (bioconductor-uri "S4Arrays" version))
              (sha256
               (base32
-                "0rviwjscy9c4vbdhg080p91jwlavs8agcc3z435z4dijb1syvkm3"))))
+                "1vbvr0vfwl36i7dv09ibzs7mkfyzlzfl475rrkss377zsz7gbsjh"))))
    (properties
     '((upstream-name . "S4Arrays")
       (updater-ignored-native-inputs . ("r-delayedarray"))))
@@ -25515,13 +25467,13 @@ assays such as Hi-C.")
 (define-public r-h5mread
  (package
    (name "r-h5mread")
-    (version "1.2.1")
+    (version "1.2.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "h5mread" version))
       (sha256
-        (base32 "0xdjp5y0wkv2aazj17hi65qmsjaa9jaadim5hx525h5gb0c6p8nw"))))
+        (base32 "01iykyb36cnzbs7xf3jcgnndnib4pk0w4wg8scy1rnagcy89yp2a"))))
    (properties
     '((upstream-name . "h5mread")
       ;; Avoid dependency cycle.
@@ -26339,13 +26291,13 @@ variable and significantly correlated genes.")
 (define-public r-sparsearray
  (package
    (name "r-sparsearray")
-    (version "1.10.8")
+    (version "1.10.2")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "SparseArray" version))
       (sha256
-        (base32 "1bjxljwfrv787ikp61xl29wx3k6624qz75gl1kzfif62vys7vgf0"))))
+        (base32 "0576063dl9a464ddc86ldpmz4c8g2qibsagw1adzrs30282d1m35"))))
    (properties `((upstream-name . "SparseArray")))
    (build-system r-build-system)
    (propagated-inputs (list r-biocgenerics
@@ -26497,14 +26449,14 @@ memory usage and processing time is minimized.")
 (define-public r-mscoreutils
  (package
    (name "r-mscoreutils")
-    (version "1.22.1")
+    (version "1.21.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "MsCoreUtils" version))
       (sha256
        (base32
-         "1vrczrj854i0510y91zad51nnai1spl3wwgn2bafgk25fx8f48gl"))))
+         "1lckbd96589vsmyy6prqijxafwiwx3mnm9c1jlw6dbxivfzmk3n7"))))
    (properties
     '((upstream-name . "MsCoreUtils")
       ;; Avoid dependency cycle.
@@ -27162,14 +27114,14 @@ on the plot.")
 (define-public r-abn
  (package
    (name "r-abn")
-    (version "3.1.13")
+    (version "3.1.12")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "abn" version))
       (sha256
        (base32
-         "1l1yv2rc4aa3zp5w9qsr4n9mbr7g5n5bgldpvpy9z1wf664lxy8w"))))
+         "1k0pxan20ldhx4yl6li3bj3darzhbxh7m9kk2r3cpkwsxavvxm7z"))))
    (build-system r-build-system)
    (arguments
     (list
@@ -27981,13 +27933,13 @@ targets.  It can also be used for differential expression/2-class data.")
 (define-public r-bayesspace
  (package
    (name "r-bayesspace")
-    (version "1.20.2")
+    (version "1.20.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "BayesSpace" version))
       (sha256
-        (base32 "0spymw9hva3q2p8a0a69a0jaix09cw75a6k7sr4wh9bqxjglyccc"))))
+        (base32 "1mqa0f08ynpplvg7ni8alk0a9w4yy876jslzx3p1kmyb8ncb4zaj"))))
    (properties `((upstream-name . "BayesSpace")))
    (build-system r-build-system)
    (propagated-inputs
@@ -28982,14 +28934,14 @@ embeddings and functions to build new reference.")
 (define-public r-tximeta
  (package
    (name "r-tximeta")
-    (version "1.28.1")
+    (version "1.28.0")
    (source
     (origin
       (method url-fetch)
       (uri (bioconductor-uri "tximeta" version))
       (sha256
        (base32
-         "1152llv077q19zyyzzba0ggy03vlvgqrirrkssa8nk0pi93nh1zv"))))
+         "0rpka083c8gw3crd1sp2vhlbk9rbyvnc6r5gnr55am73rp7dk3px"))))
    (properties `((upstream-name . "tximeta")))
    (build-system r-build-system)
    ;; Two tests fail because data files are not included.
@@ -73,3 +73,16 @@ simple tools through complex programming languages.

 Bison also provides an implementation of @command{yacc}, as specified by POSIX.")
    (license gpl3+)))
+
+(define-public bison-3.0
+  (package
+    (inherit bison)
+    (version "3.0.5")
+    (source
+     (origin
+      (method url-fetch)
+      (uri (string-append "mirror://gnu/bison/bison-"
+                          version ".tar.xz"))
+      (sha256
+       (base32
+        "0f7kjygrckkx8vas2nm673592jif0a9mw5g8207f6hj6h4pfyp07"))))))
@@ -64,6 +64,7 @@
  #:use-module (gnu packages python-xyz)
  #:use-module (gnu packages tex)
  #:use-module (gnu packages texinfo)
+  #:use-module (gnu packages texlive)
  #:use-module (gnu packages version-control)
  #:use-module (gnu packages webkit)
  #:use-module (gnu packages xml))
@@ -302,7 +303,7 @@ software, with support for multiple texts and languages.")
    (build-system cmake-build-system)
    (native-inputs (list appstream
                         appstream-glib
-                         at-spi2-core
+                         atk
                         biblesync
                         desktop-file-utils ;for 'desktop-file-validate'
                         (list glib "bin")
@@ -368,7 +368,7 @@ across a broad spectrum of applications.")
    (name "boost-numpy")
    (native-inputs
     (modify-inputs (package-native-inputs boost)
-       (append python-numpy-1)))))
+       (append python-numpy)))))

 (define-public boost-sync
  (let ((commit "e690de2d30e2f1649ff500c9a6f3539814994b1c")
@@ -949,16 +949,8 @@ Info manual.")))
           (modify-inputs (package-native-inputs u-boot)
                          (prepend python-filelock
                                   python-pycryptodomex))))
-    (inputs (list gnutls ncurses/tinfo))
    (arguments
-     `(#:make-flags '("HOSTCC=gcc"
-                      ,@(if (%current-target-system)
-                            (list "CROSS_BUILD_TOOLS=y"
-                                  (string-append
-                                   "CROSS_COMPILE="
-                                   (%current-target-system)
-                                   "-"))
-                            '()))
+     `(#:make-flags '("HOSTCC=gcc")
       #:test-target "tcheck"
       #:phases
       (modify-phases %standard-phases
@@ -62,7 +62,6 @@
  #:use-module (guix utils)
  #:use-module (gnu packages)
  #:use-module (gnu packages adns)
-  #:use-module (gnu packages algebra)
  #:use-module (gnu packages autotools)
  #:use-module (gnu packages base)
  #:use-module (gnu packages bash)
@@ -226,67 +225,47 @@ generate such a compilation database.")
 (define-public bmake
  (package
    (name "bmake")
-    (version "20251111")
+    (version "20230723")
    (source
     (origin
       (method url-fetch)
       (uri (string-append
             "http://www.crufty.net/ftp/pub/sjg/bmake-" version ".tar.gz"))
       (sha256
-        (base32 "0q30a04lg91g4932xgl0hg4c798inr5ky8fq6cwqzfkpar8zi8s5"))
-       (patches (search-patches "bmake-run-check-separately.patch"))))
+        (base32 "012rzgjmncdla1l43f9wl8v13h7d46zgn28k6djpcgx23fahsan4"))))
    (build-system gnu-build-system)
    (inputs
     (list bash-minimal))
    (native-inputs
-     (list bc coreutils))
+     (list coreutils))
    (arguments
     (list
-      #:test-target "test"
+      #:tests? #f                       ; test during build
      #:phases
      #~(modify-phases %standard-phases
-          ;; Ensure that a store path to /bin/sh is detected as a POSIX shell by
-          ;; modifying the pattern matching in the use_defshell() function.
-          ;; Without this, the tests won't correctly detect our provided default
-          ;; shell as a POSIX shell and will thus fail.
-          (add-after 'unpack 'fix-shell-detection
-            (lambda _
-              (substitute* "configure"
-                (("sh\\|/bin/sh\\|\\*/bsh)")
-                 "*/bin/sh)"))))
          (add-after 'configure 'fix-test ; fix from nixpkgs
            (lambda* (#:key inputs native-inputs #:allow-other-keys)
              (substitute* "unit-tests/unexport-env.mk"
                (("PATH=\t/bin:/usr/bin:/sbin:/usr/sbin")
                 "PATH := ${PATH}"))
-              (substitute* '("unit-tests/varmod-sun-shell1.exp"
-                             "unit-tests/suff.exp")
-                (("/bin/sh")
-                 (search-input-file (or native-inputs inputs) "/bin/sh")))
              (substitute* '("unit-tests/opt-keep-going-indirect.mk"
                             "unit-tests/opt-keep-going-indirect.exp")
                (("false")
-                 (search-input-file (or native-inputs inputs) "/bin/false"))))))
+                 (search-input-file (or native-inputs inputs) "/bin/false")))))
+          (add-after 'configure 'remove-fail-tests
+            (lambda _
+              (substitute* "unit-tests/Makefile"
+                (("cmd-interrupt") "")
+                (("deptgt-interrupt") "")
+                (("varmod-localtime") "")))))
      #:configure-flags
      #~(list
         (string-append
-          "--with-defshell=" #$(this-package-input "bash-minimal") "/bin/sh")
+          "--with-defshell=" #$(this-package-input "bash-minimal") "/bin/bash")
         (string-append
          "--with-default-sys-path=" #$output "/share/mk"))
      #:make-flags
-      #~(list
-          "INSTALL=install"         ; use coreutils' install
-          (string-append
-            "BROKEN_TESTS="
-            (string-join
-              (list "cmd-interrupt"
-                    "deptgt-interrupt"
-                    "varmod-localtime"
-                    ;; directive-export failures are related to TZ env.
-                    ;; these tests are also disabled by nixpkgs.
-                    "directive-export"
-                    "directive-export-gmake"
-              " "))))))
+      #~(list "INSTALL=install")))      ; use coreutils' install
    (home-page "http://www.crufty.net/help/sjg/bmake.htm")
    (synopsis "BSD's make")
    (description
@@ -447,51 +426,55 @@ resembles Python.")
    (license license:expat)))

 (define-public muon
-  (package
-    (name "muon")
-    (version "0.5.0")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/muon-build/muon")
-                     (commit version)))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1w0vkishj7r3swzg4m1fl3hacs8mycwhsrr5vw8sy67y81cihqbd"))))
-    (build-system meson-build-system)
-    (arguments
-     (list #:meson (computed-file "null-package" #~(mkdir #$output))
-           #:ninja samu-as-ninja-wrapper
-           #:configure-flags #~(list "-Dsamurai=disabled")
-           #:tests? #f                  ;to avoid extra dependencies
-           #:phases
-           #~(modify-phases %standard-phases
-               (add-after 'unpack 'patch-/bin/sh
-                 (lambda* (#:key inputs #:allow-other-keys)
-                   (substitute* "tools/generate_test_check_script.py"
-                     (("#!/bin/sh")
-                      (string-append "#!" (search-input-file inputs
-                                                             "bin/sh"))))))
-               (add-after 'patch-source-shebangs 'build-muon-bootstrap
-                 (lambda _
-                   (setenv "CC" #$(cc-for-target))
-                   (setenv "CFLAGS" "-DBOOTSTRAP_NO_SAMU")
-                   (invoke "./bootstrap.sh" "build")))
-               (add-after 'build-muon-bootstrap 'setup-muon-bootstrap-as-meson
-                 (lambda _
-                   (mkdir "bin")
-                   (symlink "../build/muon-bootstrap" "bin/meson")
-                   (setenv  "PATH" (string-append (getcwd) "/bin:"
-                                                  (getenv "PATH"))))))))
-    (native-inputs (list samurai))
-    (inputs (list bash-minimal pkgconf))
-    (native-search-paths (list $PKG_CONFIG_PATH))
-    (home-page "https://muon.build/")
-    (synopsis "Meson build system alternative implementation in C99")
-    (description "Muon is an implementation of the meson build system in c99
+  ;; Use the latest commit, as there hasn't yet been a new release including
+  ;; recent changes (see: https://github.com/muon-build/muon/issues/146).
+  (let ((commit "55b7285a92779bd8b8870482e5535ce878f3e09f")
+        (revision "0"))
+    (package
+      (name "muon")
+      (version (git-version "0.4.0" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/muon-build/muon")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "0kpk1h82djb0brxkwy5ylpvdpp2l1489bq822dmryhmsd573ii48"))))
+      (build-system meson-build-system)
+      (arguments
+       (list #:meson (computed-file "null-package" #~(mkdir #$output))
+             #:ninja samu-as-ninja-wrapper
+             #:configure-flags #~(list "-Dsamurai=disabled")
+             #:tests? #f                  ;to avoid extra dependencies
+             #:phases
+             #~(modify-phases %standard-phases
+                 (add-after 'unpack 'patch-/bin/sh
+                   (lambda* (#:key inputs #:allow-other-keys)
+                     (substitute* "tools/generate_test_check_script.py"
+                       (("#!/bin/sh")
+                        (string-append "#!" (search-input-file inputs
+                                                               "bin/sh"))))))
+                 (add-after 'patch-source-shebangs 'build-muon-bootstrap
+                   (lambda _
+                     (setenv "CC" #$(cc-for-target))
+                     (setenv "CFLAGS" "-DBOOTSTRAP_NO_SAMU")
+                     (invoke "./bootstrap.sh" "build")))
+                 (add-after 'build-muon-bootstrap 'setup-muon-bootstrap-as-meson
+                   (lambda _
+                     (mkdir "bin")
+                     (symlink "../build/muon-bootstrap" "bin/meson")
+                     (setenv  "PATH" (string-append (getcwd) "/bin:"
+                                                    (getenv "PATH"))))))))
+      (native-inputs (list samurai))
+      (inputs (list bash-minimal pkgconf))
+      (native-search-paths (list $PKG_CONFIG_PATH))
+      (home-page "https://muon.build/")
+      (synopsis "Meson build system alternative implementation in C99")
+      (description "Muon is an implementation of the meson build system in c99
 with minimal dependencies.")
-    (license license:gpl3)))            ;for the combined work
+      (license license:gpl3))))            ;for the combined work

 (define-public muon-as-meson-wrapper
  (package/inherit muon
@@ -9,7 +9,7 @@
 ;;; Copyright © 2020, 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2020, 2021 Marius Bakke <marius@gnu.org>
 ;;; Copyright © 2020 Katherine Cox-Buday <cox.katherine.e@gmail.com>
-;;; Copyright © 2020, 2022, 2023, 2025 Maxim Cournoyer <maxim@guixotic.coop>
+;;; Copyright © 2020, 2022, 2023 Maxim Cournoyer <maxim@guixotic.coop>
 ;;; Copyright © 2020, 2021 Greg Hogan <code@greghogan.com>
 ;;; Copyright © 2021 David Dashyan <mail@davie.li>
 ;;; Copyright © 2021 Foo Chuan Wei <chuanwei.foo@hotmail.com>
@@ -24,8 +24,6 @@
 ;;; Copyright @ 2022, Kitzman <kitzman@disroot.org>
 ;;; Copyright @ 2025 Dariqq <dariqq@posteo.net>
 ;;; Copyright © 2025 Ashish SHUKLA <ashish.is@lostca.se>
-;;; Copyright © 2026 Cayetano Santos <csantosb@inventati.org>
-;;; Copyright © 2026 Sharlatan Hellseher <sharlatanus@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -73,7 +71,6 @@
  #:use-module (gnu packages m4)
  #:use-module (gnu packages multiprecision)
  #:use-module (gnu packages ncurses)
-  #:use-module (gnu packages oneapi)
  #:use-module (gnu packages pcre)
  #:use-module (gnu packages python)
  #:use-module (gnu packages python-build)
@@ -153,59 +150,6 @@ data structure with good performance characteristics for concatenation and
 slicing.")
     (license license:boost1.0))))

-(define-public c-siphash
-  (package
-    (name "c-siphash")
-    (version "1.1.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/c-util/c-siphash")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1igz5nbdm8l0hir5azmjcc46qz9qhrhkr656fzll99vsnja815sb"))))
-    (build-system meson-build-system)
-    (native-inputs
-     (list pkg-config))
-    (propagated-inputs
-     (list c-stdaux))
-    (home-page "https://c-util.github.io/c-siphash/")
-    (synopsis "Streaming-capable SipHash")
-    (description
-     "The c-siphash project is a standalone implementation of SipHash in
-Standard ISO-C11.  It provides a streaming-capable API to compute data hashes
-according to the SipHash algorithm.  For API documentation, see the
-@code{c-siphash.h} header file, as well as the docbook comments for each function.")
-    (license (list license:asl2.0
-                   license:lgpl2.1+))))
-
-(define-public c-stdaux
-  (package
-    (name "c-stdaux")
-    (version "1.6.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/c-util/c-stdaux")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0kj03iw2sfy3ni6s4p810wkaj561bl8fqqgzyvb48llnkyi6appz"))))
-    (build-system meson-build-system)
-    (home-page "https://c-util.github.io/c-stdaux/")
-    (synopsis "Auxiliary macros and functions for the C standard library")
-    (description
-     "This package provides support macros and auxiliary functions around
-the functionality of common C standard libraries.  This includes helpers for
-the ISO C Standard Library, but also other common specifications like POSIX or
-common extended features of widespread compilers like @code{gcc} and
-@code{clang}.")
-    (license (list license:asl2.0
-                   license:lgpl2.1+))))
-
 (define-public cproc
  (let ((commit "14a8916e23bc6daebcb54f1384fa0eb2455072e3")
        (revision "3"))
@@ -1522,8 +1466,8 @@ Telemetry Transport (MQTT) publish-subscribe messaging protocol.")
 ;;; The package is named orangeduck-mpc to differentiate it from GNU mpc.
 (define-public orangeduck-mpc
  ;; The last release lacks an 'install' target.
-  (let ((commit "1049534fc56b1971345c7aaa792dea55d6f9b7bc")
-        (revision "1"))
+  (let ((commit "7c910e9303833c349f7432188ff77f2745254df2")
+        (revision "0"))
    (package
      (name "orangeduck-mpc")
      (version (git-version "0.9.0" revision commit))
@@ -1535,7 +1479,9 @@ Telemetry Transport (MQTT) publish-subscribe messaging protocol.")
                (file-name (git-file-name name version))
                (sha256
                 (base32
-                  "1wpxchbjxsyksr8il9pvg195nvqzsjdshzyzwikxda0fss0p7aap"))))
+                  "01a4vcxdnz0fbn90c9zc3jzklyqqvp9sfjpjwpq0f5r0l2pp37ad"))
+                (patches
+                 (search-patches "orangeduck-mpc-fix-pkg-config.patch"))))
      (build-system gnu-build-system)
      (arguments
       (list #:make-flags #~(list (string-append "CC=" #$(cc-for-target))
@@ -1762,7 +1708,7 @@ string.h, but with a utf8* prefix instead of the str* prefix.")
 (define-public simdutf
  (package
    (name "simdutf")
-    (version "7.7.1")
+    (version "7.2.0")
    (source
     (origin
       (method git-fetch)
@@ -1771,9 +1717,8 @@ string.h, but with a utf8* prefix instead of the str* prefix.")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "0kw4j4qqcfjaii667xa745pklj50m70nqq8cj5agj714acczbk7y"))))
+        (base32 "1kw4k3mhkj3bcmfmwwzq76hs2ypg5lrjl4vnp2dfg73vas9v9w35"))))
    (build-system cmake-build-system)
-    (arguments (list #:configure-flags #~(list "-DBUILD_SHARED_LIBS=ON")))
    (synopsis "SIMD Unicode validation and transcoding")
    (description
     "simdutf is a C++ library providing Unicode routines (UTF8, UTF16,
@@ -1851,7 +1796,7 @@ SIMD (Single Instruction, Multiple Data) instructions.")
 (define-public ispc
  (package
    (name "ispc")
-    (version "1.29.1")
+    (version "1.19.0")
    (source
     (origin
       (method git-fetch)
@@ -1860,49 +1805,46 @@ SIMD (Single Instruction, Multiple Data) instructions.")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "02n14684nqbp1sxpnjkg6r9vwpdzqiwwaqxlp9bjykd125834ip2"))))
+        (base32 "0yhcgyzjlrgs920lm0l6kygj2skanfb6qkxbdgm69r8c2xkzkaa3"))))
+    (inputs (list ncurses))
+    (native-inputs (list bison clang flex m4 python))
    (build-system cmake-build-system)
-    (arguments
-     (list
-      #:tests? #f
-      #:configure-flags
-      #~(list (string-append "-DCMAKE_C_COMPILER=" #$(cc-for-target))
-              (string-append "-DCMAKE_CXX_COMPILER=" #$(cxx-for-target))
-              (string-append "-DCLANG_EXECUTABLE="
-                             (assoc-ref %build-inputs "clang")
-                             "/bin/clang")
-              (string-append "-DCLANGPP_EXECUTABLE="
-                             (assoc-ref %build-inputs "clang")
-                             "/bin/clang++"))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'configure 'patch-curses-requirement
-            (lambda _
-              (substitute* "CMakeLists.txt"
-                (("\\bCURSES_CURSES_LIBRARY\\b")
-                 "CURSES_LIBRARY"))))
-          ;; Note: This works around the following issue:
-          ;; <https://github.com/ispc/ispc/issues/1865>
-          ;; Because GCC in Guix does not have multilib support.
-          (add-before 'configure 'patch-target-archs
-            (lambda _
-              (substitute* "cmake/GenerateBuiltins.cmake"
-                (("\\bforeach \\(bit 32 64\\)")
-                 #$@(if (target-64bit?)
-                        '("foreach (bit 64)")
-                         '("foreach (bit 32)")))
-                (("\\bforeach \\(arch .*?\\)")
-                 #$@(if (target-x86?)
-                        '("foreach (arch \"x86\")")
-                         '("foreach (arch \"arm\")")))
-                (("\\bforeach \\(os_name \"windows\" .*?\\)")
-                 "foreach (os_name \"linux\")")))))))
-    (inputs
-     (list ncurses onetbb))
-    (native-inputs
-     (list bison clang-19 flex m4 python-minimal-wrapper))
    (supported-systems
     '("x86_64-linux" "i686-linux" "aarch64-linux" "armhf-linux"))
+    (arguments
+     `(#:tests? #f
+       #:configure-flags
+       `(,,(string-append "-DCMAKE_C_COMPILER=" (cc-for-target))
+         ,,(string-append "-DCMAKE_CXX_COMPILER=" (cxx-for-target))
+         ,(string-append "-DCLANG_EXECUTABLE="
+                         (assoc-ref %build-inputs "clang")
+                         "/bin/clang")
+         ,(string-append "-DCLANGPP_EXECUTABLE="
+                         (assoc-ref %build-inputs "clang")
+                         "/bin/clang++"))
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'patch-curses-requirement
+           (lambda _
+             (substitute* "CMakeLists.txt"
+               (("\\bCURSES_CURSES_LIBRARY\\b")
+                "CURSES_LIBRARY"))))
+         ;; Note: This works around the following issue:
+         ;; <https://github.com/ispc/ispc/issues/1865>
+         ;; Because GCC in Guix does not have multilib support.
+         (add-before 'configure 'patch-target-archs
+           (lambda _
+             (substitute* "cmake/GenerateBuiltins.cmake"
+               (("\\bforeach \\(bit 32 64\\)")
+                ,(if (target-64bit?)
+                     "foreach (bit 64)"
+                     "foreach (bit 32)"))
+               (("\\bforeach \\(arch .*?\\)")
+                ,(if (target-x86?)
+                     "foreach (arch \"x86\")"
+                     "foreach (arch \"arm\")"))
+               (("\\bforeach \\(os_name \"windows\" .*?\\)")
+                "foreach (os_name \"linux\")")))))))
    (synopsis "Implicit SPMD Program Compiler")
    (description
     "ISPC is a compiler for a variant of the C programming language, with
@@ -58,7 +58,6 @@
 ;;; Copyright © 2025 Nicolas Graves <ngraves@ngraves.fr>
 ;;; Copyright © 2025 nomike Postmann <nomike@nomike.com>
 ;;; Copyright © 2025 Josep Bigorra <jjbigorra@gmail.com>
-;;; Copyright © 2025 Murilo <murilo@disroot.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -110,7 +109,6 @@
  #:use-module (gnu packages python-web)
  #:use-module (gnu packages python-xyz)
  #:use-module (gnu packages python-science)
-  #:use-module (gnu packages ruby)
  #:use-module (gnu packages sqlite)
  #:use-module (gnu packages texinfo)
  #:use-module (gnu packages time)
@@ -671,7 +669,7 @@ a multi-paradigm automated test framework for C++ and Objective-C.")
 (define-public catch2
  (package
    (name "catch2")
-    (version "2.13.10")
+    (version "2.13.8")
    (home-page "https://github.com/catchorg/Catch2")
    (source (origin
              (method git-fetch)
@@ -681,7 +679,7 @@ a multi-paradigm automated test framework for C++ and Objective-C.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "1dcwp41963vga22hm32hj609wxgfn0a6p9impcw8dxqj477gcx2y"))))
+                "18a6d7rcb6ilhxd5dff32jkfdf2ik58pbywrv04ras70217kdq4c"))))
    (build-system cmake-build-system)
    (inputs
     (list python-wrapper))
@@ -1913,6 +1911,41 @@ tests.  Tests can be rerun in a specific order by passing a seed value
 reported in a previous test run.")
    (license license:expat)))

+(define-public python-pytest-randomly
+  (package
+    (name "python-pytest-randomly")
+    (version "3.16.0")
+    (source (origin
+              (method git-fetch)        ;no tests in pypi archive
+              (uri (git-reference
+                    (url "https://github.com/pytest-dev/pytest-randomly")
+                    (commit version)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1ai6gn811wm1ixjimgpsi5nwlcpxaj4kmil69vf2s2ph0c2zw93s"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      #~(list "-p" "no:randomly"
+              ;; The tests validating ordering fail, as well as as two others,
+              ;; for unknown reasons (see:
+              ;; https://github.com/pytest-dev/pytest-randomly/issues/454).
+              "-k" "not test_it_runs_before_stepwise and not test_model_bakery")))
+    (native-inputs
+     (list python-factory-boy
+           python-faker
+           python-numpy
+           python-pytest-bootstrap
+           python-pytest-xdist
+           python-setuptools))
+    (home-page "https://github.com/pytest-dev/pytest-randomly")
+    (synopsis "Pytest plugin to randomly order tests")
+    (description "This is a Pytest plugin to randomly order tests and control
+Python's @code{random.seed}.")
+    (license license:expat)))
+
 (define-public python-pytest-runner
  (package
    (name "python-pytest-runner")
@@ -3398,52 +3431,6 @@ of advanced library and language features, which means it should be easily
 portable to just about any platform.")
    (license license:expat)))

-(define-public unity-test
-  (package
-    (name "unity-test")
-    (version "2.6.1")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/ThrowTheSwitch/Unity")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32 "1s0jj9f2zav49mn9ib90idcmb6hq93aczbqysn5hj6binjmrnjw3"))
-              (patches (search-patches "unity-test-set-subdir-correctly.patch"
-                                       "unity-test-support-int64.patch"))))
-    (build-system meson-build-system)
-    (arguments
-      (list #:configure-flags
-            #~(list "-Dsupport_double=true"
-                    "-Dsupport_int64=true")
-            #:phases
-            #~(modify-phases %standard-phases
-                (add-after 'patch-source-shebangs 'patch-more-shebangs
-                  (lambda _
-                    (substitute* '("auto/unity_test_summary.rb")
-                      (("/usr/bin/ruby")
-                       (string-append #$(this-package-input "ruby")
-                                      "/bin/ruby")))
-                    (substitute* '("auto/stylize_as_junit.py"
-                                   "auto/unity_test_summary.py")
-                      (("#! python3")
-                       (string-append #$(this-package-input "python")
-                                      "/bin/python3")))))
-                (add-after 'install 'install-extra
-                  (lambda _
-                    (for-each (lambda (x)
-                                (install-file x
-                                  (string-append #$output "/share/unity-test")))
-                              (find-files "../source/auto")))))))
-    (native-inputs (list pkg-config))
-    (inputs (list python ruby))
-    (home-page "https://github.com/ThrowTheSwitch/Unity")
-    (synopsis "Simple unit testing for C")
-    (description "This package provides a unit testing framework built for C,
-with a focus on working with embedded toolchains.")
-    (license license:expat)))
-
 (define-public libfaketime
  (package
    (name "libfaketime")
@@ -3758,6 +3745,40 @@ asynchronous code in Python (asyncio).")
 directories and files.")
    (license license:expat)))

+(define-public python-pytest-regressions
+  (package
+    (name "python-pytest-regressions")
+    (version "2.7.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "pytest_regressions" version))
+       (sha256
+        (base32 "0pph1935rq180ax0szwwf3c6zq2v40snypagr49914i31570cc2c"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      ;; Do not fail on warning.
+      ;; DeprecationWarning: module 'sre_constants' is deprecated
+      #:test-flags #~(list "-W" "ignore::DeprecationWarning")))
+    (native-inputs
+     (list python-numpy
+           python-pandas
+           python-pytest
+           python-setuptools
+           python-setuptools-scm))
+    (propagated-inputs
+     (list python-pytest-datadir
+           python-pyyaml))
+    (home-page "https://github.com/ESSS/pytest-regressions")
+    (synopsis "Easy to use fixtures to write regression tests")
+    (description
+     "This plugin makes it simple to test general data, images, files, and
+numeric tables by saving expected data in a data directory (courtesy of
+pytest-datadir) that can be used to verify that future runs produce the same
+data.")
+    (license license:expat)))
+
 (define-public python-pytest-tornado5
  (package
    (name "python-pytest-tornado5")
@@ -812,7 +812,7 @@ quantum chemistry (and molecular mechanics) softwares.")
                  glm
                  netcdf))
    (native-inputs (list cmake-minimal catch2 python-pytest python-setuptools))
-    (propagated-inputs (list python-numpy-1))
+    (propagated-inputs (list python-numpy))
    (home-page "https://pymol.org")
    (synopsis "Molecular visualization system")
    (description
@@ -1049,57 +1049,56 @@ integrals for Gaussian type functions.")
    (build-system cmake-build-system)
    (arguments
     (list
+      #:modules '((guix build cmake-build-system)
+                  (guix build utils)
+                  ((guix build python-build-system)
+                   #:select (site-packages)))
      #:imported-modules (append %cmake-build-system-modules
-                                 %pyproject-build-system-modules)
-      #:modules
-      '((guix build cmake-build-system)
-        (guix build utils)
-        ((guix build pyproject-build-system) #:select (site-packages)))
+                                 '((guix build python-build-system)))
      #:configure-flags
      #~(list "-DUSE_PYTHON=ON"
              (string-append "-DPYTHON_INSTALL_DIR="
                             (site-packages %build-inputs %outputs)))
      #:phases
-      (with-extensions (list (pyproject-guile-json))
-        #~(modify-phases %standard-phases
-            (add-after 'unpack 'patch-includes
-              (lambda _
-                (substitute* (list "src/json.cpp"
-                                   "src/sprintf.cpp"
-                                   "include/gemmi/dirwalk.hpp"
-                                   "include/gemmi/cif.hpp"
-                                   "include/gemmi/json.hpp"
-                                   "python/gemmi.cpp"
-                                   "python/serial.h"
-                                   "include/gemmi/atof.hpp"
-                                   "include/gemmi/numb.hpp"
-                                   "include/gemmi/fourier.hpp")
-                  (("<stb/stb_sprintf.h>") "<stb_sprintf.h>")
-                  (("\"third_party/tinydir.h\"") "<tinydir.h>")
-                  (("\"third_party/tao/pegtl.hpp\"") "<tao/pegtl.hpp>")
-                  (("\"\\.\\./third_party/sajson.h\"") "<sajson.h>")
-                  (("\"gemmi/third_party/tao/pegtl/parse_error.hpp\"")
-                   "<tao/pegtl/parse_error.hpp>")
-                  (("\"third_party/fast_float.h\"")
-                   "<fast_float/fast_float.h>")
-                  (("\"third_party/pocketfft_hdronly.h\"")
-                   "<pocketfft_hdronly.h>")
-                  (("\"\\.\\./third_party/serializer.h\"")
-                   "<zpp/serializer.h>"))))
-            (add-after 'unpack 'change-bin-prefix
-              (lambda _
-                (substitute* "CMakeLists.txt"
-                  (("install\\(TARGETS program DESTINATION bin\\)")
-                   (string-append
-                    "install(TARGETS program DESTINATION "
-                    #$output:bin "/bin)")))))
-            (replace 'check
-              (lambda* (#:key tests? #:allow-other-keys)
-                (when tests?
-                  (with-directory-excursion "../source"
-                    (setenv "PYTHONPATH" "../build/py")
-                    (invoke "python3" "-m" "unittest" "discover" "-v"
-                            "-s" "tests")))))))))
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'patch-includes
+            (lambda _
+              (substitute* (list "src/json.cpp"
+                                 "src/sprintf.cpp"
+                                 "include/gemmi/dirwalk.hpp"
+                                 "include/gemmi/cif.hpp"
+                                 "include/gemmi/json.hpp"
+                                 "python/gemmi.cpp"
+                                 "python/serial.h"
+                                 "include/gemmi/atof.hpp"
+                                 "include/gemmi/numb.hpp"
+                                 "include/gemmi/fourier.hpp")
+                (("<stb/stb_sprintf.h>") "<stb_sprintf.h>")
+                (("\"third_party/tinydir.h\"") "<tinydir.h>")
+                (("\"third_party/tao/pegtl.hpp\"") "<tao/pegtl.hpp>")
+                (("\"\\.\\./third_party/sajson.h\"") "<sajson.h>")
+                (("\"gemmi/third_party/tao/pegtl/parse_error.hpp\"")
+                 "<tao/pegtl/parse_error.hpp>")
+                (("\"third_party/fast_float.h\"")
+                 "<fast_float/fast_float.h>")
+                (("\"third_party/pocketfft_hdronly.h\"")
+                 "<pocketfft_hdronly.h>")
+                (("\"\\.\\./third_party/serializer.h\"")
+                 "<zpp/serializer.h>"))))
+          (add-after 'unpack 'change-bin-prefix
+            (lambda _
+              (substitute* "CMakeLists.txt"
+                (("install\\(TARGETS program DESTINATION bin\\)")
+                 (string-append
+                  "install(TARGETS program DESTINATION "
+                  #$output:bin "/bin)")))))
+          (replace 'check
+            (lambda* (#:key tests? #:allow-other-keys)
+              (when tests?
+                (with-directory-excursion "../source"
+                  (setenv "PYTHONPATH" "../build/py")
+                  (invoke "python3" "-m" "unittest" "discover" "-v"
+                          "-s" "tests"))))))))
    (inputs (list python zlib))
    (native-inputs
     (list fast-float
@@ -1464,55 +1463,56 @@ and rendering molecules.")
              "-DPYTHON_EXECUTABLE=python3"
              (string-append "-DPYTHON_FLAGS=;--prefix=" #$output ";--root=/"))
      #:imported-modules (append %cmake-build-system-modules
-                                 %pyproject-build-system-modules)
+                                 '((guix build python-build-system)))
      #:modules '((guix build cmake-build-system)
                  (guix build utils)
-                  ((guix build pyproject-build-system) #:prefix py:))
+                  ((guix build python-build-system)
+                   #:select (add-installed-pythonpath)))
      #:phases
-      (with-extensions (list (pyproject-guile-json))
-        #~(modify-phases %standard-phases
-            (add-before 'configure 'patch-cmake
-              (lambda _
-                (substitute* (list "src/Test/CMakeLists.txt"
-                                   "src/RingDecomposerLib/CMakeLists.txt")
-                  (("build_.*STATIC") "#"))
-                (substitute* "test/CMakeLists.txt"
-                  (("STATIC_TEST") "SHARED_TEST"))
-                ;; Link Python library against shared library
-                (substitute* "src/python/CMakeLists.txt"
-                  (("RingDecomposerLibStatic") "RingDecomposerLib"))
-                (substitute* "src/python/setup.py.in"
-                  (("static_libs =.*") "static_libs = []\n")
-                  (("shared_libs\\s*=.*")
-                   (string-append
-                    "shared_libs = ['RingDecomposerLib']"))
-                  (("library_dirs\\s*=\\s*\\[\\]")
-                   "library_dirs = ['${CMAKE_BINARY_DIR}/src/RingDecomposerLib']")
-                  (("extra_objects=.*")
-                   (string-append
-                    "extra_link_args=['-Wl,-rpath=" #$output "/lib'],\n")))))
-            (add-after 'build 'build-doc
-              (lambda _
-                ;; Disable redundant LaTeX documentation
-                (substitute* "../source/documentation/sphinx/conf.py"
-                  (("^(subprocess.*latex|shutil).*") ""))
-                (substitute* "../source/documentation/doxygen.cfg"
-                  (("GENERATE_LATEX.*YES") "GENERATE_LATEX = NO"))
-                ;; Build HTML documentation
-                (invoke "sphinx-build" "-b" "html"
-                        "../source/documentation/sphinx" "html")))
-            (add-after 'install 'install-doc
-              (lambda _
-                ;; Not reproducible
-                (delete-file-recursively "html/.doctrees")
-                (copy-recursively "html"
-                                  (string-append #$output "/share/doc/"
-                                                 #$name "-" #$version "/html"))))
-            (delete 'check)
-            (add-after 'install 'check
-              (assoc-ref %standard-phases 'check))
-            (add-before 'check 'add-install-to-pythonpath
-              (assoc-ref py:%standard-phases 'add-install-to-pythonpath))))))
+      #~(modify-phases %standard-phases
+          (add-before 'configure 'patch-cmake
+            (lambda _
+              (substitute* (list "src/Test/CMakeLists.txt"
+                                 "src/RingDecomposerLib/CMakeLists.txt")
+                (("build_.*STATIC") "#"))
+              (substitute* "test/CMakeLists.txt"
+                (("STATIC_TEST") "SHARED_TEST"))
+              ;; Link Python library against shared library
+              (substitute* "src/python/CMakeLists.txt"
+                (("RingDecomposerLibStatic") "RingDecomposerLib"))
+              (substitute* "src/python/setup.py.in"
+                (("static_libs =.*") "static_libs = []\n")
+                (("shared_libs\\s*=.*")
+                 (string-append
+                  "shared_libs = ['RingDecomposerLib']"))
+                (("library_dirs\\s*=\\s*\\[\\]")
+                 "library_dirs = ['${CMAKE_BINARY_DIR}/src/RingDecomposerLib']")
+                (("extra_objects=.*")
+                 (string-append
+                  "extra_link_args=['-Wl,-rpath=" #$output "/lib'],\n")))))
+          (add-after 'build 'build-doc
+            (lambda _
+              ;; Disable redundant LaTeX documentation
+              (substitute* "../source/documentation/sphinx/conf.py"
+                (("^(subprocess.*latex|shutil).*") ""))
+              (substitute* "../source/documentation/doxygen.cfg"
+                (("GENERATE_LATEX.*YES") "GENERATE_LATEX = NO"))
+              ;; Build HTML documentation
+              (invoke "sphinx-build" "-b" "html"
+                      "../source/documentation/sphinx" "html")))
+          (add-after 'install 'install-doc
+            (lambda _
+              ;; Not reproducible
+              (delete-file-recursively "html/.doctrees")
+              (copy-recursively "html"
+                                (string-append #$output "/share/doc/"
+                                               #$name "-" #$version "/html"))))
+          (delete 'check)
+          (add-after 'install 'check
+            (assoc-ref %standard-phases 'check))
+          (add-before 'check 'set-pythonpath
+            (lambda* (#:key inputs outputs #:allow-other-keys)
+              (add-installed-pythonpath inputs outputs))))))
    (inputs (list python))
    (native-inputs (list doxygen python python-cython-0 python-sphinx))
    (home-page "https://github.com/rareylab/RingDecomposerLib")
@@ -1602,10 +1602,11 @@ Tanimoto scoring.")
    (arguments
     (list
      #:imported-modules (append %cmake-build-system-modules
-                                 %pyproject-build-system-modules)
+                                 '((guix build python-build-system)))
      #:modules '((guix build cmake-build-system)
                  (guix build utils)
-                  ((guix build pyproject-build-system) #:prefix py:))
+                  ((guix build python-build-system)
+                   #:select (add-installed-pythonpath)))
      #:configure-flags
      #~(list "-DRDK_BUILD_AVALON_SUPPORT=ON"
              "-DRDK_BUILD_CAIRO_SUPPORT=ON"
@@ -1630,67 +1631,67 @@ Tanimoto scoring.")
               "-DCMAKE_INCLUDE_PATH="
               (search-input-directory %build-inputs "/include/avalontoolkit")))
      #:phases
-      (with-extensions (list (pyproject-guile-json))
-        #~(modify-phases %standard-phases
-            (add-after 'unpack 'copy-external-dependencies
-              (lambda _
-                (symlink
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'copy-external-dependencies
+            (lambda _
+              (symlink
+               (string-append
+                (search-input-file
+                 %build-inputs "/share/fonts/truetype/ComicNeue-Regular.ttf"))
+               "Data/Fonts/ComicNeue-Regular.ttf")))
+          (add-after 'unpack 'fix-inchi-include
+            (lambda _
+              (substitute* "Code/cmake/Modules/FindInchi.cmake"
+                (("inchi_api.h.*\\)") "inchi/inchi_api.h)")
+                (("INCHI_LIBRARY NAMES.*\\)")
+                 "INCHI_LIBRARY NAMES inchi PATH_SUFFIXES inchi)")
+                (("find_library" prev)
                 (string-append
-                  (search-input-file
-                   %build-inputs "/share/fonts/truetype/ComicNeue-Regular.ttf"))
-                 "Data/Fonts/ComicNeue-Regular.ttf")))
-            (add-after 'unpack 'fix-inchi-include
+                  "list(APPEND CMAKE_FIND_LIBRARY_SUFFIXES .so.1)\n"
+                  prev)))
+              (substitute* "External/INCHI-API/inchi.cpp"
+                (("<inchi_api.h>") "<inchi/inchi_api.h>"))))
+          (add-before 'build 'enable-bytecode-determinism
              (lambda _
-                (substitute* "Code/cmake/Modules/FindInchi.cmake"
-                  (("inchi_api.h.*\\)") "inchi/inchi_api.h)")
-                  (("INCHI_LIBRARY NAMES.*\\)")
-                   "INCHI_LIBRARY NAMES inchi PATH_SUFFIXES inchi)")
-                  (("find_library" prev)
-                   (string-append
-                    "list(APPEND CMAKE_FIND_LIBRARY_SUFFIXES .so.1)\n"
-                    prev)))
-                (substitute* "External/INCHI-API/inchi.cpp"
-                  (("<inchi_api.h>") "<inchi/inchi_api.h>"))))
-            (add-before 'build 'enable-bytecode-determinism
-              (assoc-ref py:%standard-phases 'enable-bytecode-determinism))
-            (add-after 'install 'pre-check
-              (lambda* (#:key inputs outputs #:allow-other-keys)
-                (with-directory-excursion "../source"
-                  (invoke "sqlite3" "Data/RDData.sqlt"
-                          ".read rdkit/Dbase/test_data/RDData.sqlite")
-                  (invoke "sqlite3" "Data/RDTests.sqlt"
-                          ".read rdkit/Dbase/test_data/RDTests.sqlite")
-                  (setenv "RDBASE" (canonicalize-path ".")))))
-            (add-after 'install 'add-install-to-pythonpath
-              (assoc-ref py:%standard-phases 'add-install-to-pythonpath))
-            (delete 'check)
-            (add-after 'pre-check 'check
-              (lambda* (#:key tests? parallel-tests? #:allow-other-keys)
-                (when tests?
-                  (let ((job-count (number->string
-                                    (if parallel-tests? (parallel-job-count) 1))))
-                    (invoke
-                     "ctest" "-j" job-count
-                     "-E" (string-append
-                           "("
-                           (string-join
-                            '(;; need pickled data
-                              "pyDiscreteValueVect" "pySparseIntVect"
-                              "graphmoltestPickler" "pyPartialCharges"
-                              "substructLibraryTest" "pyFeatures"
-                              "pythonTestDirML" "pythonTestDirChem"
-                              "pyRealValueVect" "pyDiscreteValueVect"
-                              "pickleTestsCatch"
-                              ;; Catching Python exception fails
-                              "pyRanker"
-                              ;; Flaky test depending on floating point rounding
-                              "testConrec"
-                              ;; Expensive test which may time out
-                              "pySynthonSpaceSearch"
-                              ;; Circular import
-                              "pythonSourceTests"
-                              ) "|")
-                           ")"))))))))))
+                (setenv "PYTHONHASHSEED" "0")
+                (setenv "PYTHONDONTWRITEBYTECODE" "1")))
+          (add-after 'install 'pre-check
+            (lambda* (#:key inputs outputs #:allow-other-keys)
+              (with-directory-excursion "../source"
+                (invoke "sqlite3" "Data/RDData.sqlt"
+                        ".read rdkit/Dbase/test_data/RDData.sqlite")
+                (invoke "sqlite3" "Data/RDTests.sqlt"
+                        ".read rdkit/Dbase/test_data/RDTests.sqlite")
+                (setenv "RDBASE" (canonicalize-path ".")))
+              (add-installed-pythonpath inputs outputs)))
+          (delete 'check)
+          (add-after 'pre-check 'check
+            (lambda* (#:key tests? parallel-tests? #:allow-other-keys)
+              (when tests?
+                (let ((job-count (number->string
+                                  (if parallel-tests? (parallel-job-count) 1))))
+                  (invoke
+                   "ctest" "-j" job-count
+                   "-E" (string-append
+                         "("
+                         (string-join
+                          '(;; need pickled data
+                            "pyDiscreteValueVect" "pySparseIntVect"
+                            "graphmoltestPickler" "pyPartialCharges"
+                            "substructLibraryTest" "pyFeatures"
+                            "pythonTestDirML" "pythonTestDirChem"
+                            "pyRealValueVect" "pyDiscreteValueVect"
+                            "pickleTestsCatch"
+                            ;; Catching Python exception fails
+                            "pyRanker"
+                            ;; Flaky test depending on floating point rounding
+                            "testConrec"
+                            ;; Expensive test which may time out
+                            "pySynthonSpaceSearch"
+                            ;; Circular import
+                            "pythonSourceTests"
+                            ) "|")
+                         ")")))))))))
    (inputs
     (list avalon-toolkit
           cairo
@@ -1716,7 +1717,7 @@ Tanimoto scoring.")
           rapidjson
           tar))
    (propagated-inputs
-     (list python-numpy-1 python-cairocffi python-pillow))
+     (list python-numpy python-cairocffi python-pillow))
    (home-page "https://rdkit.org/")
    (synopsis "Collection of cheminformatics software")
    (description "RDKit is a C++ and Python library for cheminformatics, which
@@ -72,7 +72,7 @@
 (define-public cuirass
  (package
    (name "cuirass")
-    (version "1.3.4")
+    (version "1.3.3")
    (source
     (origin
       (method git-fetch)
@@ -82,7 +82,7 @@
       (file-name (git-file-name name version))
       (sha256
        (base32
-         "0apzyda8hfnvq07lylvlz7kifkmnvhsc538jjwmzjl60af9f634a"))))
+         "0zq56wdjyxnmhr93358db95cc9i7qkffk98vscjr26pb4ab3ym21"))))
    (build-system gnu-build-system)
    (arguments
     (list #:modules `((guix build utils)
@@ -29,7 +29,6 @@
  #:use-module (guix utils)
  #:use-module (guix build-system gnu)
  #:use-module (guix build-system meson)
-  #:use-module (guix build-system pyproject)
  #:use-module (guix build-system python)
  #:use-module (gnu packages)
  #:use-module (gnu packages admin)
@@ -73,36 +72,41 @@
      #:modules
      `((guix build meson-build-system)
        (guix build utils)
-        ((guix build pyproject-build-system) #:prefix py:))
+        ((guix build python-build-system) #:prefix python:))
      #:imported-modules
-      (append %meson-build-system-modules
-              %pyproject-build-system-modules)
+      `(,@%meson-build-system-modules
+        (guix build python-build-system))
      #:configure-flags
      #~(list (string-append
               "-Dpy-overrides-dir="
-               (py:site-packages %build-inputs %outputs) "/gi/overrides"))
+               (python:site-packages %build-inputs %outputs) "/gi/overrides"))
      #:phases
-      (with-extensions (list (pyproject-guile-json))
-        #~(modify-phases %standard-phases
-            (add-before 'configure 'set-gtk-module-path
-              (lambda* (#:key inputs outputs #:allow-other-keys)
-                (define (string-quote str)
-                  (format #f "'~a'" str))
-                (substitute* "libxapp/meson.build"
-                  (("gtk3_dep\\.get_pkgconfig_variable[(]'libdir'[)]")
-                   (string-quote (string-append #$output "/lib"))))
+      #~(modify-phases %standard-phases
+          (add-before 'configure 'set-gtk-module-path
+            (lambda* (#:key inputs outputs #:allow-other-keys)
+              (substitute* "libxapp/meson.build"
+                (("gtk3_dep\\.get_pkgconfig_variable[(]'libdir'[)]")
+                 (string-append "'" (assoc-ref outputs "out") "/lib'")))

-                (substitute* "scripts/pastebin"
-                  (("'nc'")
-                   (string-quote (search-input-file inputs "/bin/nc"))))
-                (substitute* "scripts/upload-system-info"
-                  (("'inxi'")
-                   (string-quote (search-input-file inputs "/bin/inxi")))
-                  (("'/usr/bin/pastebin'")
-                   (string-quote (string-append #$output "/bin/pastebin")))
-                  (("'xdg-open'")
-                   (string-quote (search-input-file inputs
-                                                    "/bin/xdg-open"))))))))))
+              (substitute* "scripts/pastebin"
+                (("'nc'")
+                 (string-append "'"
+                                (search-input-file inputs "/bin/nc")
+                                "'")))
+
+              (substitute* "scripts/upload-system-info"
+                (("'inxi'")
+                 (string-append "'"
+                                (search-input-file inputs "/bin/inxi")
+                                "'"))
+                (("'/usr/bin/pastebin'")
+                 (string-append "'"
+                                (assoc-ref outputs "out")
+                                "/bin/pastebin'"))
+                (("'xdg-open'")
+                 (string-append "'"
+                                (search-input-file inputs "/bin/xdg-open")
+                                "'"))))))))
    (inputs
     (list dbus
           glib                         ; for gio
@@ -143,7 +147,15 @@ cross-DE solutions.")
       (sha256
        (base32 "06v84bvhhhx7lf7bsl2wdxh7vlkpb2fczjh6717b9jjr7xhvif8r"))))
    (build-system meson-build-system)
-    (arguments (list #:tests? #f))      ; no tests provided
+    (arguments
+     (list
+      #:tests? #f ; no tests provided
+      #:imported-modules `((guix build python-build-system)
+                           ,@%meson-build-system-modules)
+      #:modules '((guix build utils)
+                  (guix build meson-build-system)
+                  ((guix build python-build-system)
+                   #:prefix python:))))
    (native-inputs
     (list gobject-introspection
           intltool
@@ -31,7 +31,7 @@
 (define-public clifm
  (package
    (name "clifm")
-    (version "1.26.3")
+    (version "1.26")
    (source
     (origin
       (method git-fetch)
@@ -40,7 +40,7 @@
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "1xzpkiid5c51jkmxx4f9iyc6qsir7byp7zyjlskr6hnyah99i1wm"))))
+        (base32 "0mdh24qjx4cghghrl6sbp49a6kv8birxa5vxrsmj8ddnya2j1n3q"))))
    (build-system gnu-build-system)
    (arguments
     `(#:make-flags (list (string-append "CC="
@@ -5,7 +5,6 @@
 ;;; Copyright © 2019 Jesse Gibbons <jgibbons2357+guix@gmail.com>
 ;;; Copyright © 2020 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2024 Roman Scherer <roman@burningswell.com>
-;;; Copyright © 2025, 2026 Mathieu Lirzin <mthl@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -36,269 +35,102 @@
  #:use-module (guix build-system clojure)
  #:use-module (ice-9 match))

-(define-public clojure-spec-alpha
-  (package
-    (name "clojure-spec-alpha")
-    (version "0.6.249")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/clojure/spec.alpha")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1rzy7mjzchsjpwkn3b5vg5hnmsj5h9ljxdjn48j92bgh7vl3k2r5"))))
-    (build-system clojure-build-system)
-    (arguments '(#:source-dirs '("src/main/clojure")
-                 #:test-dirs '("src/test/clojure")
-                 #:doc-dirs '()))
-    (native-inputs (list clojure-test-check))
-    (synopsis
-     "Clojure library to describe the structure of data and functions")
-    (description
-     "This package can be used to validate data, conform (destructure) data, explain
-invalid data, generate examples that conform to the specs, and automatically
-use generative testing to test functions.
-
-Clojure depends on this library and provides it.  Thus it is not recommended
-to add a direct dependency on this package.")
-    (home-page "https://github.com/clojure/spec.alpha")
-    (license license:epl1.0)))
-
-(define-public clojure-core-specs-alpha
-  (package
-    (name "clojure-core-specs-alpha")
-    (version "0.5.81")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/clojure/core.specs.alpha")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1hy060mb2hxirynkk36plx1rvpj6i2ldn8mvnwfd02wvjvh57dad"))))
-    (build-system clojure-build-system)
-    (arguments '(#:source-dirs '("src/main/clojure")
-                 #:test-dirs '()
-                 #:doc-dirs '()))
-    (synopsis "Describe clojure.core macros and functions")
-    (description
-     "This package contains specs to describe Clojure core macros and functions.
-
-Clojure depends on this library and provides it.  Thus it is not recommended
-to add a direct dependency on this package.")
-    (home-page "https://github.com/clojure/core.specs.alpha")
-    (license license:epl1.0)))
-
-(define-public clojure-java-classpath
-  (package
-    (name "clojure-java-classpath")
-    (version "1.1.1")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/clojure/java.classpath")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1k34yrx3gmvf46984zdgn2vb98ixf47q1vgh9p78bgmpyhrwzx2z"))))
-    (build-system clojure-build-system)
-    (arguments '(#:source-dirs '("src/main/clojure")
-                 #:test-dirs '("src/test/clojure")
-                 #:doc-dirs '()))
-    (synopsis "Examine the Java classpath from Clojure programs")
-    (description
-     "This package provides utilities for dealing with the JVM's classpath from
-Clojure.")
-    (home-page "https://github.com/clojure/java.classpath")
-    (license license:epl1.0)))
-
-(define-public clojure-data-generators
-  (package
-    (name "clojure-data-generators")
-    (version "1.1.1")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/clojure/data.generators")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1ynazp55v15zv5jwz1wh2p8cawjcmn0bwzgfs2dwrp6aq231jafm"))))
-    (build-system clojure-build-system)
-    (arguments '(#:source-dirs '("src/main/clojure")
-                 #:test-dirs '("src/test/clojure")
-                 #:doc-dirs '()))
-    (synopsis "Generators for random Clojure data")
-    (description
-     "This package contains various functions to generate random clojure data.")
-    (home-page "https://github.com/clojure/data.generators")
-    (license license:epl1.0)))
-
-(define-public clojure-tools-namespace
-  (package
-    (name "clojure-tools-namespace")
-    (version "1.5.1")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/clojure/tools.namespace")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "0j1lz3xnpgvyi0mcg9mjz7hrchf3hwhbhxi2163d739dxdx60s22"))))
-    (build-system clojure-build-system)
-    (arguments '(#:source-dirs '("src/main/clojure")
-                 #:test-dirs '("src/test/clojure")
-                 #:doc-dirs '()))
-    (propagated-inputs (list clojure-java-classpath
-                             clojure-tools-reader))
-    (synopsis "Tools for managing namespaces in Clojure")
-    (description
-     "This package parses ns declarations from source files, extract their
-dependencies, build a graph of namespace dependencies within a project, update
-that graph as files change, and reload files in the correct order.
-
-This is only about namespace dependencies within a single project.  It has
-nothing to do with Leiningen, Maven, JAR files, or repositories.")
-    (home-page "https://github.com/clojure/tools.namespace")
-    (license license:epl1.0)))
-
-(define-public clojure-test-generative
-  (package
-    (name "clojure-test-generative")
-    (version "1.1.1")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/clojure/test.generative")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "0lb72cr4s6rgpg18v3jr67ps6wx4p7j7mfzwnfgmm0v8rldlcycf"))))
-    (build-system clojure-build-system)
-    (arguments '(#:source-dirs '("src/main/clojure")
-                 #:test-dirs '("src/examples/clojure")
-                 #:doc-dirs '()))
-    (propagated-inputs (list clojure-tools-namespace
-                             clojure-data-generators))
-    (synopsis "Generative test runner")
-    (description
-     "This package defines generators functions and property based testing macros.")
-    (home-page "https://github.com/clojure/test.generative")
-    (license license:epl1.0)))
-
-(define-public clojure-test-check
-  (package
-    (name "clojure-test-check")
-    (version "1.1.3")
-    (home-page "https://github.com/clojure/test.check")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url home-page)
-                    (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1j1x80rv0pli3g91wy01panlqbhgf7zqm7jdr2rzjqf2yyksc70n"))))
-    (build-system clojure-build-system)
-    (arguments
-     '(#:source-dirs '("src/main/clojure")
-       #:test-dirs '("src/test/clojure")
-       #:doc-dirs '()))
-    (synopsis "QuickCheck for Clojure")
-    (description "@code{test.check} is a Clojure property-based testing tool
-inspired by QuickCheck.  The core idea of @code{test.check} is that instead of
-enumerating expected input and output for unit tests, you write properties
-about your function that should hold true for all inputs.  This lets you write
-concise, powerful tests.")
-    (license license:epl1.0)))
-
-(define-public clojure-tools-reader
-  (package
-    (name "clojure-tools-reader")
-    (version "1.6.0")
-    (home-page "https://github.com/clojure/tools.reader")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url home-page)
-                    (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "006zy7dpk678rzawqyqcypccw48bl4b9s4xjrwzhgq8z5s8v6lnd"))))
-    (build-system clojure-build-system)
-    (arguments
-     '(#:doc-dirs '()
-       #:source-dirs '("src/main/clojure")
-       #:test-dirs '("src/test/clojure")
-       #:test-exclude '(clojure.tools.common-tests))) ; Loaded by other tests.
-    (synopsis "Clojure reader written in Clojure")
-    (description "The clojure.tools.reader library offers all functionality
-provided by the Clojure Core reader and more.  It adds metadata such as column
-and line numbers not only to lists, but also to symbols, vectors and maps.")
-    (license license:epl1.0)))
-
-(define (package-sources . packages)
-  (map package-source packages))
-
 (define-public clojure
-  (let ((provided-libraries (package-sources clojure-core-specs-alpha
-                                             clojure-spec-alpha))
-        (test-libraries (package-sources clojure-data-generators
-                                         clojure-java-classpath
-                                         clojure-test-check
-                                         clojure-test-generative
-                                         clojure-tools-namespace
-                                         clojure-tools-reader)))
+  (let* ((lib (lambda (prefix version hash)
+                (origin (method url-fetch)
+                        (uri (string-append "https://github.com/clojure/"
+                                            prefix version ".tar.gz"))
+                        (sha256 (base32 hash)))))
+         ;; The libraries below are needed to run the tests.
+         (libraries
+          `(("core-specs-alpha-src"
+             ,(lib "core.specs.alpha/archive/v"
+                   "0.4.74"
+                   "1hgl3222381349s4w5bnz02gghxfc8jjsqxhrvgadvn8ybh3dcsp"))
+            ("data-generators-src"
+             ,(lib "data.generators/archive/data.generators-"
+                   "1.0.0"
+                   "0s3hf1njvs68b8igasikvzagzqxl0gbri7w2qhzsypkhfh60v2cp"))
+            ("java-classpath-src"
+             ,(lib "java.classpath/archive/java.classpath-"
+                   "1.0.0"
+                   "178zajjsc9phk5l61r8w9hcpk0wgc9a811pl7kjgvn7rg4l7fh7j"))
+            ("spec-alpha-src"
+             ,(lib "spec.alpha/archive/v"
+                   "0.5.238"
+                   "0h15q9cmxaa7l2pqwwcykfyql8vbw6ns2a4lqfchik1mpfpr9jrb"))
+            ("test-check-src"
+             ,(lib "test.check/archive/v"
+                   "1.1.1"
+                   "0kx8l79mhpnn94rpsgc7nac7gb222g7a47mzrycj8crfc54wf0c1"))
+            ("test-generative-src"
+             ,(lib "test.generative/archive/v"
+                   "1.1.0"
+                   "0sm3q4jkcn06b3r0m0p29z159zqc8jk3k02yz92xwvdbnywaqnfz"))
+            ("tools-namespace-src"
+             ,(lib "tools.namespace/archive/tools.namespace-"
+                   "1.0.0"
+                   "1ifpk93m33rj2xm1qnnninlsdvm1liqmsp9igr63pjjwwwjw1cnn"))
+            ("tools-reader-src"
+             ,(lib "tools.reader/archive/tools.reader-"
+                   "1.3.2"
+                   "1n4dhg61iyypnjbxmihhqjb7lfpc0lzfvlk4jd8w0yr6za414f3a"))))
+         (library-names (match libraries
+                          (((library-name _) ...)
+                           library-name))))
+
    (package
      (name "clojure")
-      (version "1.12.4")
+      (version "1.12.0")
      (source (let ((name+version (string-append name "-" version)))
                (origin
                  (method git-fetch)
                  (uri (git-reference
-                         (url "https://github.com/clojure/clojure")
-                         (commit name+version)))
+                        (url "https://github.com/clojure/clojure")
+                        (commit name+version)))
                  (file-name (string-append name+version "-checkout"))
                  (sha256
-                   (base32
-                    "072dv6s2gxcg8snlgkpjk6bp1cb17bgfshdq6ijsa4yslpqbf9wc")))))
+                   (base32 "17f62x9qq71yhcfpg2npv19xi9wcpgqj255nmvpfy1z2md64gawz")))))
      (build-system ant-build-system)
-      (inputs (list icedtea))
+      (inputs
+       `(("jre" ,icedtea)))
      (arguments
       `(#:imported-modules ((guix build clojure-utils)
                             (guix build clojure-build-system)
+                             (guix build guile-build-system)
                             ,@%ant-build-system-modules)
         #:modules ((guix build ant-build-system)
                    ((guix build clojure-build-system) #:prefix clj:)
                    (guix build clojure-utils)
                    (guix build java-utils)
                    (guix build utils)
+                    (ice-9 match)
+                    (ice-9 regex)
                    (srfi srfi-26))
         #:test-target "test"
         #:phases
         (modify-phases %standard-phases
           (add-after 'unpack 'unpack-library-sources
             (lambda* (#:key inputs #:allow-other-keys)
-               (define (extract-provided-library name)
-                 (copy-recursively
-                  (string-append (assoc-ref inputs name) "/src/main/clojure")
-                  "src/clj/"))
-               (for-each extract-provided-library
-                         ',(map origin-actual-file-name provided-libraries))))
+               (define (extract-library name)
+                 (mkdir-p name)
+                 (with-directory-excursion name
+                   (invoke "tar"
+                           "--extract"
+                           "--verbose"
+                           "--file" (assoc-ref inputs name)
+                           "--strip-components=1")))
+               (for-each extract-library ',library-names)
+               (copy-recursively "core-specs-alpha-src/src/main/clojure"
+                                 "src/clj/")
+               (copy-recursively "spec-alpha-src/src/main/clojure"
+                                 "src/clj/")
+               #t))
           (add-after 'unpack-library-sources 'fix-manifest-classpath
             (lambda _
               (substitute* "build.xml"
-                 (("<attribute name=\"Class-Path\" value=\".\"/>") ""))))
+                 (("<attribute name=\"Class-Path\" value=\".\"/>") ""))
+               #t))
           (add-after 'unpack-library-sources 'clojure-spec-skip-macros
             ;; Disable spec macro instrumentation when compiling clojure.spec
             ;; See: https://clojure.atlassian.net/browse/CLJ-2254
@@ -308,7 +140,8 @@ and line numbers not only to lists, but also to symbols, vectors and maps.")
                  ,(string-join
                    '("<sysproperty key=\"java.awt.headless\" value=\"true\"/>"
                      "<sysproperty key=\"clojure.spec.skip-macros\" value=\"true\"/>\n")
-                    "\n")))))
+                    "\n")))
+               #t))
           (add-after 'unpack-library-sources 'clojure-spec-compile
             ;; Compile and include clojure.spec.alpha & clojure.core.specs.alpha
             (lambda _
@@ -319,34 +152,28 @@ and line numbers not only to lists, but also to symbols, vectors and maps.")
                      "<arg value=\"clojure.spec.alpha\"/>"
                      "<arg value=\"clojure.spec.gen.alpha\"/>"
                      "<arg value=\"clojure.spec.test.alpha\"/>"
-                      "<arg value=\"clojure.core.specs.alpha\"/>"))))))
+                      "<arg value=\"clojure.core.specs.alpha\"/>"))))
+               #t))
           (add-before 'build 'maven-classpath-properties
-             (lambda* (#:key inputs #:allow-other-keys)
-               (define (source-dir library)
-                 (string-append (assoc-ref inputs library) "/src/main/clojure"))
-               (let* ((libraries ',(map origin-actual-file-name test-libraries))
-                      (test-classpath (map source-dir libraries)))
-                 (with-output-to-file "maven-classpath.properties"
-                   (lambda _
-                     (display "maven.compile.classpath=\n")
-                     (display (string-append "maven.test.classpath="
-                                             (string-join test-classpath ":")
-                                             "\n")))))))
-           (add-before 'check 'fix-test-classpath
-             ;; Some java test files need access to compiled classes.
             (lambda _
-               (substitute* "build.xml"
-                 (("javac srcdir=\"\\$\\{jtestsrc\\}\"" cmd)
-                  (string-append cmd " classpath=\"${build}\"")))))
+               (define (make-classpath libraries)
+                 (string-join (map (lambda (library)
+                                     (string-append library "/src/main/clojure"))
+                                   libraries) ":"))
+               (with-output-to-file "maven-classpath.properties"
+                 (lambda ()
+                   (let ((classpath (make-classpath ',library-names)))
+                     (display (string-append "maven.compile.classpath=" classpath "\n"))
+                     (display (string-append "maven.test.classpath=" classpath "\n")))))
+               #t))
           (add-after 'build 'build-javadoc ant-build-javadoc)
           (replace 'install (install-jars "./"))
           (add-after 'install-license-files 'install-doc
             (cut install-doc #:doc-dirs '("doc/clojure/") <...>))
           (add-after 'install-doc 'install-javadoc
             (install-javadoc "target/javadoc/"))
-           (add-after 'reset-gzip-timestamps 'reset-class-timestamps
-             clj:reset-class-timestamps))))
-      (native-inputs (append provided-libraries test-libraries))
+           (add-after 'reset-gzip-timestamps 'reset-class-timestamps clj:reset-class-timestamps))))
+      (native-inputs libraries)
      (home-page "https://clojure.org/")
      (synopsis "Lisp dialect running on the JVM")
      (description "Clojure is a dynamic, general-purpose programming language,
@@ -377,14 +204,14 @@ designs.")
 (define-public clojure-tools
  (package
    (name "clojure-tools")
-    (version "1.12.4.1582")
+    (version "1.11.1.1413")
    (source
     (origin
       (method url-fetch)
       (uri (string-append "https://download.clojure.org/install/clojure-tools-"
                           version
                           ".tar.gz"))
-       (sha256 (base32 "08gzfblnz0zhnk6pwr9vcm6y168psgrwmqww3wqk1v7j5gr68n7x"))
+       (sha256 (base32 "1q0z71ifdxwvyy9gvq8mx8jbygf8cszrlhb3h22walfamnisbhwk"))
       ;; Remove AOT compiled JAR.  The other JAR only contains uncompiled
       ;; Clojure source code.
       (snippet
@@ -424,8 +251,7 @@ designs.")
    (inputs (list rlwrap
                  clojure
                  clojure-tools-deps
-                  java-commons-logging-minimal
-                  java-slf4j-nop))
+                  java-commons-logging-minimal))
    (home-page "https://clojure.org/releases/tools")
    (synopsis "CLI tools for the Clojure programming language")
    (description "The Clojure command line tools can be used to start a
@@ -435,16 +261,16 @@ Clojure repl, use Clojure and Java libraries, and start Clojure programs.")
 (define-public clojure-algo-generic
  (package
    (name "clojure-algo-generic")
-    (version "1.0.1")
+    (version "0.1.3")
    (source
     (origin
       (method git-fetch)
       (uri (git-reference
             (url "https://github.com/clojure/algo.generic")
-             (commit (string-append "v" version))))
+             (commit (string-append "algo.generic-" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "0i10rxk5jxsw1cm2a8rsq9zgl04173cbpaj02vvc9nb4ig219a8y"))))
+        (base32 "1s6q10qp276dcpzv06bq1q3bvkvlw03qhmncqcs9cc6p9lc0w4p4"))))
    (build-system clojure-build-system)
    (arguments
     '(#:source-dirs '("src/main/clojure/")
@@ -468,16 +294,16 @@ that can be implemented for any data type.")
 (define-public clojure-algo-monads
  (package
    (name "clojure-algo-monads")
-    (version "0.2.1")
+    (version "0.1.6")
    (source
     (origin
       (method git-fetch)
       (uri (git-reference
             (url "https://github.com/clojure/algo.monads")
-             (commit (string-append "v" version))))
+             (commit (string-append "algo.monads-" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "1l420fzqr1mw45w1lz6iqx0s61m8w3r3ad8zmsg17cqahnfakh00"))))
+        (base32 "0mv3ba72hyhgasg2k3zy83ij61gak6cs4d6qgh8123z3j02mbh8p"))))
    (build-system clojure-build-system)
    (arguments
     '(#:source-dirs '("src/main/clojure/")
@@ -496,7 +322,7 @@ defining and using monads and useful monadic functions.")
 (define-public clojure-core-async
  (package
    (name "clojure-core-async")
-    (version "1.8.741")
+    (version "1.6.681")
    (home-page "https://github.com/clojure/core.async")
    (source (origin
              (method git-fetch)
@@ -506,7 +332,7 @@ defining and using monads and useful monadic functions.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "1m6lir2xr119yxz483cz0rfw4k3a40qmmsiwl2y7kyxy65vab60z"))))
+                "1j9yz14hy2qs8g3flsqkn1sx9c0qlr5mmpy6ab1zml9yhbw5arzg"))))
    (build-system clojure-build-system)
    (arguments
     '(#:source-dirs '("src/main/clojure")
@@ -530,7 +356,7 @@ work on Communicating Sequential Processes (CSP).")
 (define-public clojure-core-cache
  (package
    (name "clojure-core-cache")
-    (version "1.2.249")
+    (version "1.1.234")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -539,7 +365,7 @@ work on Communicating Sequential Processes (CSP).")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "0hdwv5dsx49i12riz3frzshwkgw26ah43667lzga2n6zgpmrh8ii"))))
+                "0jiq022kd5jdpmxz884rvg5317xmx7g3gnidkpcfsamchyfh5qxq"))))
    (build-system clojure-build-system)
    (arguments
     '(#:source-dirs '("src/main/clojure")
@@ -557,16 +383,16 @@ cache and Naive cache backed with soft references.")
 (define-public clojure-core-match
  (package
    (name "clojure-core-match")
-    (version "1.1.1")
+    (version "1.0.0")
    (source (origin
              (method git-fetch)
              (uri (git-reference
                    (url "https://github.com/clojure/core.match")
-                    (commit (string-append "v" version))))
+                    (commit (string-append "core.match-" version))))
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "09kijs81js7iy810qkzn7fi996gmf7bmlm2ax571zy0yr38i2hbr"))))
+                "0ajpxjv4yc282cm0jw8819fay2j6jqp9nfy69k7vll09q7vqsd22"))))
    (build-system clojure-build-system)
    (arguments
     '(#:source-dirs '("src/main/clojure")
@@ -582,7 +408,7 @@ It supports Clojure 1.5.1 and later as well as ClojureScript.")
 (define-public clojure-core-memoize
  (package
    (name "clojure-core-memoize")
-    (version "1.2.273")
+    (version "1.1.266")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -591,7 +417,7 @@ It supports Clojure 1.5.1 and later as well as ClojureScript.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "009fj19y464an66pryygmqbnx2dqk5wkp40rbkbgkir0ax0k6j3y"))))
+                "0nys79zrvcnwgyxb91zlyl3nb4p6r6y4n5rbdvzqkvsxxazi9ji0"))))
    (build-system clojure-build-system)
    (arguments
     '(#:source-dirs '("src/main/clojure")
@@ -609,17 +435,17 @@ Least-recently-used, Least-used and Time-to-live.")
 (define-public clojure-data-codec
  (package
    (name "clojure-data-codec")
-    (version "0.2.1")
+    (version "0.1.1")
    (home-page "https://github.com/clojure/data.codec")
    (source (origin
              (method git-fetch)
              (uri (git-reference
                    (url home-page)
-                    (commit (string-append "v" version))))
+                    (commit (string-append "data.codec-" version))))
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "1wxqwkbpaxjchh03lwy3ngyx6dwv7x7l1qhac42dl6bg213izil5"))))
+                "192df1dmbwvf1x837mi731n9x94bdypaz18va45plzgdsh4xx6dr"))))
    (build-system clojure-build-system)
    (arguments
     '(#:source-dirs '("src/main/clojure")
@@ -638,7 +464,7 @@ is on par with Java implementations, e.g., Apache commons-codec.")
 (define-public clojure-data-csv
  (package
    (name "clojure-data-csv")
-    (version "1.1.1")
+    (version "1.0.1")
    (home-page "https://github.com/clojure/data.csv")
    (source (origin
              (method git-fetch)
@@ -648,7 +474,7 @@ is on par with Java implementations, e.g., Apache commons-codec.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "1i43qzjn29a0xb3q54sfrn8f77nmxd0v0fn9361as07yclh8jzif"))))
+                "1mh1qli6xrw4s3yj9cxxh50z4m7z08indj3ya30znkhi4xsphii2"))))
    (build-system clojure-build-system)
    (arguments
     '(#:source-dirs '("src/main/clojure")
@@ -663,7 +489,7 @@ relaxed.")
 (define-public clojure-data-json
  (package
    (name "clojure-data-json")
-    (version "2.5.2")
+    (version "2.5.0")
    (home-page "https://github.com/clojure/data.json")
    (source (origin
              (method git-fetch)
@@ -673,7 +499,7 @@ relaxed.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "0xkcd6h5g7yhr839wci6dsynmbijj9r5mrrj70gx849mkhj98411"))))
+                "04k3fr9y1gp337h0d2zxam3aa3hl046r2g2qiizn7aq0rq6311p9"))))
    (build-system clojure-build-system)
    (arguments
     '(#:source-dirs '("src/main/clojure")
@@ -689,7 +515,7 @@ external dependencies")
 (define-public clojure-data-priority-map
  (package
    (name "clojure-data-priority-map")
-    (version "1.2.1")
+    (version "1.2.0")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -698,7 +524,7 @@ external dependencies")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "0yswqr6855n0rg0mfmjfdx0npzasm654m7sz4x0wl13grwgg220k"))))
+                "0aynzrdl0w08q89nd069lcx8s6msqmwrpqnya63jv1l2pn3w6ij4"))))
    (build-system clojure-build-system)
    (arguments
     '(#:source-dirs '("src/main/clojure")
@@ -718,17 +544,17 @@ maps also support conj/peek/pop operations.")
 (define-public clojure-data-xml
  (package
    (name "clojure-data-xml")
-    (version "0.2.0-alpha10")
+    (version "0.2.0-alpha6")
    (home-page "https://github.com/clojure/data.xml")
    (source (origin
              (method git-fetch)
              (uri (git-reference
                    (url home-page)
-                    (commit (string-append "v" version))))
+                    (commit (string-append "data.xml-" version))))
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "0mnhgrh20p2wwmq8a4631dkpxbgbijwi6sfhw5v784hzkjkfgkh6"))))
+                "08vglcapq7sd9zhw8dw1y7dcdks7f21w1pw9p05i475i3bw4cf94"))))
    (build-system clojure-build-system)
    (arguments
     '(#:source-dirs '("src/main/clojure")
@@ -737,10 +563,9 @@ maps also support conj/peek/pop operations.")
       #:phases
       (modify-phases %standard-phases
         (add-before 'build 'delete-cljs-tests
-           (lambda _
-             (delete-file "src/test/resources/clojure/data/xml/cljs_repl_nashorn.clj")
-             (delete-file "src/test/resources/clojure/data/xml/cljs_testsuite.clj")
-             (delete-file "src/test/clojure/clojure/data/xml/test_cljs.clj"))))))
+                     (lambda _
+                       (delete-file "src/test/resources/clojure/data/xml/cljs_testsuite.clj")
+                       (delete-file "src/test/clojure/clojure/data/xml/test_cljs.clj"))))))
    (propagated-inputs (list clojure-data-codec))
    (synopsis "Clojure library for reading and writing XML data")
    (description "@code{data.xml} is a Clojure library for reading and writing
@@ -817,10 +642,37 @@ tree.
      (home-page "https://github.com/Engelberg/instaparse")
      (license license:epl1.0))))

+(define-public clojure-test-check
+  (package
+    (name "clojure-test-check")
+    (version "1.1.1")
+    (home-page "https://github.com/clojure/test.check")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url home-page)
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "09jvlibnxhjv0l57y0sa7yy5in67gq4sssag77hv2d980mwdnls6"))))
+    (build-system clojure-build-system)
+    (arguments
+     '(#:source-dirs '("src/main/clojure")
+       #:test-dirs '("src/test/clojure")
+       #:doc-dirs '()))
+    (synopsis "QuickCheck for Clojure")
+    (description "@code{test.check} is a Clojure property-based testing tool
+inspired by QuickCheck.  The core idea of @code{test.check} is that instead of
+enumerating expected input and output for unit tests, you write properties
+about your function that should hold true for all inputs.  This lets you write
+concise, powerful tests.")
+    (license license:epl1.0)))
+
 (define-public clojure-tools-analyzer
  (package
    (name "clojure-tools-analyzer")
-    (version "1.2.1")
+    (version "1.2.0")
    (home-page "https://github.com/clojure/tools.analyzer")
    (source (origin
              (method git-fetch)
@@ -830,7 +682,7 @@ tree.
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "0apa3gc45rmdj19plbvglpj6i9dadkgvvidj5mcnkzi9y3h0nr27"))))
+                "05v4i8qs5d51lh113phib0brkysphxa2d71khm840586432knyaa"))))
    (build-system clojure-build-system)
    (arguments
     '(#:source-dirs '("src/main/clojure")
@@ -845,7 +697,7 @@ format.")
 (define-public clojure-tools-analyzer-jvm
  (package
    (name "clojure-tools-analyzer-jvm")
-    (version "1.3.4")
+    (version "1.3.0")
    (home-page "https://github.com/clojure/tools.analyzer.jvm")
    (source (origin
              (method git-fetch)
@@ -855,7 +707,7 @@ format.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "0pk9z8zf9bgzj0wi98yx130l7570arnxfsg9508g1jvq83djpn21"))))
+                "13nxzdp15772hzl3jmi5014jkwldkm1qccfycwkk2pn64hycmnxl"))))
    (build-system clojure-build-system)
    (arguments
     '(#:source-dirs '("src/main/clojure")
@@ -873,16 +725,16 @@ tools.analyzer, providing additional JVM-specific passes.")
 (define-public clojure-tools-macro
  (package
    (name "clojure-tools-macro")
-    (version "0.2.2")
+    (version "0.1.5")
    (source
     (origin
       (method git-fetch)
       (uri (git-reference
             (url "https://github.com/clojure/tools.macro")
-             (commit (string-append "v" version))))
+             (commit (string-append "tools.macro-" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "09xxp5vpf86akmn95mvjmd34a1pc48cjxbp6q4lvi3q8rhpkjfd5"))))
+        (base32 "14mdxqkwja0cffmyfav5pbcli2qvw1mjdgz0n619a2z2036andx8"))))
    (build-system clojure-build-system)
    (arguments
     '(#:source-dirs '("src/main/clojure/")
@@ -896,16 +748,16 @@ tools.analyzer, providing additional JVM-specific passes.")
 (define-public clojure-tools-cli
  (package
    (name "clojure-tools-cli")
-    (version "1.3.250")
+    (version "1.0.206")
    (home-page "https://github.com/clojure/tools.cli")
    (source (origin
              (method git-fetch)
              (uri (git-reference
                    (url home-page)
-                    (commit (string-append "v" version))))
+                    (commit (string-append "tools.cli-" version))))
              (file-name (git-file-name name version))
              (sha256
-               (base32 "1nyw33w83gd7xlbpma03p4jwcdcp38h8y99x2rqw4zcnw19gsz4p"))))
+               (base32 "1hvk5zacl3fr8lfcbfgckaicqjx697j0kzw2x5hwj8j5xlr8ri2r"))))
    (build-system clojure-build-system)
    (arguments
     '(#:source-dirs '("src/main/clojure/")
@@ -920,7 +772,7 @@ work with command-line arguments.")
 (define-public clojure-tools-deps
  (package
    (name "clojure-tools-deps")
-    (version "0.28.1569")
+    (version "0.18.1354")
    (home-page "https://github.com/clojure/tools.deps")
    (source (origin
              (method git-fetch)
@@ -930,26 +782,38 @@ work with command-line arguments.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "04s8cishxm1y4vnx8mpdk1qma6j0khmb356j69fsy14s615yjgfg"))))
+                "0ls5nixhsjjhf3qz8kbyhmks5lw7a25zxl46yrizbw7vba3mzrpl"))))
    (build-system clojure-build-system)
    (arguments
     `(#:source-dirs '("src/main/clojure" "src/main/resources")
-       #:java-source-dirs '("src/main/java")
       #:test-dirs '("src/test/clojure")
       #:doc-dirs '()
-       ;; FIXME: Could not initialize class
-       ;; org.eclipse.aether.transport.http.SslSocketFactory
+       ;; FIXME: Could not initialize class org.eclipse.aether.transport.http.SslSocketFactory
       #:tests? #f
       #:phases
       (modify-phases %standard-phases
-         (add-before 'build 'reference-clojure-jar-input
-           ;; Use static clojure jar from build input at runtime by default.
-           (lambda* (#:key inputs #:allow-other-keys)
-             (substitute* "src/main/resources/clojure/tools/deps/deps.edn"
-               (("org\\.clojure/clojure.*$")
-                (string-append "org.clojure/clojure {:local/root \""
-                               (assoc-ref inputs "clojure")
-                               "/share/java/clojure.jar\"}"))))))))
+         ;; FIXME: Currently, the S3 transporter depends on ClojureScript,
+         ;; which is very difficult to package due to dependencies on Java
+         ;; libraries with non-standard build systems. Instead of actually
+         ;; packaging these libraries, we just remove the S3 transporter that
+         ;; depends on them.
+         (add-after 'unpack 'remove-s3-transporter
+           (lambda _
+             (for-each delete-file
+                       (list
+                        (string-append
+                         "src/main/clojure/clojure/"
+                         "tools/deps/util/s3_aws_client.clj")
+                        (string-append
+                         "src/main/clojure/clojure/"
+                         "tools/deps/util/s3_transporter.clj")
+                        (string-append
+                         "src/test/clojure/clojure/"
+                         "tools/deps/util/test_s3_transporter.clj")))
+             (substitute*
+               "src/main/clojure/clojure/tools/deps/util/maven.clj"
+               (("clojure.tools.deps.util.s3-transporter")
+                "")))))))
    (propagated-inputs (list maven-resolver-api
                             maven-resolver-spi
                             maven-resolver-impl
@@ -961,8 +825,7 @@ work with command-line arguments.")
                             maven-resolver-transport-file
                             clojure-tools-gitlibs
                             clojure-tools-cli
-                             clojure-data-xml
-                             cognitect-aws-api))
+                             clojure-data-xml))
    (synopsis "Clojure library supporting clojure-tools")
    (description "This package provides a functional API for transitive
 dependency graph expansion and the creation of classpaths.")
@@ -974,7 +837,7 @@ dependency graph expansion and the creation of classpaths.")
  ;; Keeping it to give downstream packages a chance to upgrade
  (package
    (name "clojure-tools-deps-alpha")
-    (version "0.15.1254")
+    (version "0.14.1212")
    (home-page "https://github.com/clojure/tools.deps.alpha")
    (source (origin
              (method git-fetch)
@@ -984,7 +847,7 @@ dependency graph expansion and the creation of classpaths.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "17zvizzw637az7facwipsrg9b1kjci03aycg6w5pnjpg6b6nd5m6"))))
+                "0r8qfihii6cf95kl86x6zfldnm7wlkgda2qmq3340j1x03v244dd"))))
    (build-system clojure-build-system)
    (arguments
     `(#:source-dirs '("src/main/clojure" "src/main/resources")
@@ -992,6 +855,7 @@ dependency graph expansion and the creation of classpaths.")
       #:doc-dirs '()
       ;; FIXME: Could not initialize class org.eclipse.aether.transport.http.SslSocketFactory
       #:tests? #f
+       #:jdk ,openjdk11
       #:phases
       (modify-phases %standard-phases
         ;; FIXME: Currently, the S3 transporter depends on ClojureScript,
@@ -1036,7 +900,7 @@ dependency graph expansion and the creation of classpaths.")
 (define-public clojure-tools-gitlibs
  (package
    (name "clojure-tools-gitlibs")
-    (version "2.6.212")
+    (version "2.4.181")
    (home-page "https://github.com/clojure/tools.gitlibs")
    (source (origin
              (method git-fetch)
@@ -1046,7 +910,7 @@ dependency graph expansion and the creation of classpaths.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "199n58dwh44rlb0m514swh6zx3flckq3lccxv9dwbypbv29n9ghq"))))
+                "1d8c79f33axghadwqa955yjfsxa6fgl8jq4nfll2zrp6sjw0597k"))))
    (build-system clojure-build-system)
    (arguments
     '(#:source-dirs '("src/main/clojure")
@@ -1064,7 +928,7 @@ keeps a cache of git directories and working trees that can be reused.")
 (define-public clojure-tools-logging
  (package
    (name "clojure-tools-logging")
-    (version "1.3.1")
+    (version "1.3.0")
    (home-page "https://github.com/clojure/tools.logging")
    (source (origin
              (method git-fetch)
@@ -1074,7 +938,7 @@ keeps a cache of git directories and working trees that can be reused.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "1jdk7b6zm73m7nki76123ik6px9rl5g5wb06298v34h56qyck8lr"))))
+                "106n4cxsxzs0hvpsfi1h14b09xm6klrvj1g5fbd5nw8fj3mpkdac"))))
    (build-system clojure-build-system)
    (arguments
     '(#:doc-dirs '()
@@ -1108,10 +972,36 @@ implementation, selected at runtime when the clojure.tools.logging namespace
 is first loaded.")
    (license license:epl1.0)))

+(define-public clojure-tools-reader
+  (package
+    (name "clojure-tools-reader")
+    (version "1.5.0")
+    (home-page "https://github.com/clojure/tools.reader")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url home-page)
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1jf05q4ym8z16qaxidx47g2gjv04qcf1wvkca3wqyiaszpvym4zz"))))
+    (build-system clojure-build-system)
+    (arguments
+     '(#:doc-dirs '()
+       #:source-dirs '("src/main/clojure")
+       #:test-dirs '("src/test/clojure")
+       #:test-exclude '(clojure.tools.common-tests))) ; Loaded by other tests.
+    (synopsis "Clojure reader written in Clojure")
+    (description "The clojure.tools.reader library offers all functionality
+provided by the Clojure Core reader and more.  It adds metadata such as column
+and line numbers not only to lists, but also to symbols, vectors and maps.")
+    (license license:epl1.0)))
+
 (define-public http-kit
  (package
    (name "http-kit")
-    (version "2.8.1")
+    (version "2.8.0")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -1120,7 +1010,7 @@ is first loaded.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "1fqfl7a7ygfw43xjmmlwrl55xbz34qxpzc8230bpqvjh9n417h74"))))
+                "1361bpb4sn3dbp215s7gf1bcrb45lgx3lk6lix7bndw9lahr5ank"))))
    (build-system clojure-build-system)
    (arguments
     '(#:java-source-dirs '("src/java")
@@ -1134,59 +1024,3 @@ high-performance Clojure HTTP client and server library with WebSocket and
 asynchronous support.")
    (home-page "https://github.com/http-kit/http-kit")
    (license license:asl2.0)))
-
-(define-public cognitect-aws-api
-  (package
-    (name "cognitect-aws-api")
-    (version "0.8.774")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/cognitect-labs/aws-api")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1y3impishicd8niy1vddx6c80pnbpz24zfr7vysi4r56p1vqnwmb"))
-              (modules '((guix build utils)))
-              (snippet
-               '(begin
-                  (for-each delete-file
-                            (list
-                             ;; Require Cognitect http client
-                             "src/cognitect/aws/http/cognitect.clj"
-                             ;; Requires Babashka.
-                             "test/src/bb_test_runner.clj"
-                             ;; Requires  AWS Java SDK v2.
-                             "test/src/cognitect/aws/jdk_v2.clj"
-                             "test/src/cognitect/aws/signers_test.clj"
-                             ;; Remove integration tests.
-                             "test/src/cognitect/aws/client/shared_test.clj"
-                             "test/src/cognitect/aws/api_test.clj"
-                             "test/src/cognitect/client/impl_test.clj"
-                             "test/src/cognitect/client/test_double_test.clj"))
-                  ;; Remove integration tests
-                  (delete-file-recursively "test/src/cognitect/aws/integration")))))
-    (build-system clojure-build-system)
-    (propagated-inputs (list clojure-core-async
-                             clojure-tools-logging
-                             clojure-data-json
-                             clojure-data-xml))
-    (native-inputs (list clojure-test-check
-                         http-kit))
-    (arguments `(#:source-dirs '("src")
-                 #:doc-dirs '()
-                 #:test-dirs '("test/src" "test/resources")
-                 ;; Allow using java.net.http client.
-                 #:jdk ,openjdk11))
-    (synopsis
-     "Programmatic access to AWS services from Clojure programs")
-    (description
-     "This package is an idiomatic, data-oriented Clojure library for invoking AWS
-APIs.  While the library offers some helper and documentation functions you'll
-use at development time, the only functions you ever need at runtime are
-client, which creates a client for a given service and invoke, which invokes
-an operation on the service. invoke takes a map and returns a map, and works
-the same way for every operation on every service.")
-    (home-page "https://github.com/cognitect-labs/aws-api")
-    (license license:asl2.0)))
@@ -599,6 +599,21 @@ than gzip and 15 % smaller output than bzip2.")
   (license (list license:gpl2+ license:lgpl2.1+)) ; bits of both
   (home-page "https://tukaani.org/xz/")))

+(define-public xz-for-graal-truffle
+  (package
+   (inherit xz)
+   (name "xz-for-graal-truffle")
+   (version "5.6.2")
+   (source (origin
+            (method url-fetch)
+            (uri (list (string-append "http://tukaani.org/xz/xz-" version
+                                      ".tar.gz")
+                       (string-append "http://multiprecision.org/guix/xz-"
+                                      version ".tar.gz")))
+            (sha256
+             (base32
+              "06a585qzn2qlwdv44w7x6p6x8qmbqrqzlz29y8108vyqw7021zcb"))))))
+
 (define-public heatshrink
  (package
    (name "heatshrink")
@@ -2876,7 +2891,7 @@ computations.")
 (define-public c-blosc2
  (package
    (name "c-blosc2")
-    (version "2.22.0")
+    (version "2.15.2")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -2885,7 +2900,7 @@ computations.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "147gkmdrqbw3knqmsj8pc2x0jqcrai81wxjj5f3jna556krpxq6i"))))
+                "17kqwvw2n6bgzidi8f5906s5hc9wm1lbfbpd491gf7csxjck99sx"))))
    (build-system cmake-build-system)
    (arguments
     (list #:parallel-tests? #f
@@ -0,0 +1,91 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2014 John Darrington <jmd@gnu.org>
+;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages cook)
+  #:use-module (guix packages)
+  #:use-module (guix licenses)
+  #:use-module (guix download)
+  #:use-module (gnu packages bison)
+  #:use-module (gnu packages compression)
+  #:use-module (gnu packages groff)
+  #:use-module (gnu packages text-editors)
+  #:use-module (guix build-system gnu))
+
+(define-public cook
+  (package
+    (name "cook")
+    (version "2.34")
+    (source
+     (origin
+       (method url-fetch)
+       (uri "http://fossies.org/linux/misc/old/cook-2.34.tar.gz")
+       (sha256
+        (base32
+         "104saqnqql1l7zr2pm3f718fdky3ds8j07c6xvwrs1rfkhrw58yw"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:parallel-build? #f ; There are some nasty racy rules in the Makefile.
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'pre-conf
+           (lambda _
+             (substitute* (append '("common/env.c")
+                                  (find-files "test" "\\.sh"))
+               (("/bin/sh") (which "sh")))
+
+             ;; Guix's binutils (because it wants bit-reproducable builds) is
+             ;; is configured with the  --enable-deterministic-archives flag.
+             ;; This means the timestamp of files appended to an ar archive
+             ;; are automatically and silently mutated to 00:00 1 Jan 1970
+             ;; which plays havoc with this test, for which correct timestamps
+             ;; are very important. Adding the U flag undoes the effect of
+             ;; --enable-deterministic-archives and allows this test to work
+             ;; again.
+             (substitute* "test/00/t0077a.sh"
+               (("ar qc") "ar qcU"))
+
+             ;; Guix builds have LC_ALL set to "en_US.utf8", which causes
+             ;; `date` to use a 12-hour clock instead of 24h, which in turn
+             ;; makes t0217a.sh fail because of unexpected date output.
+             (substitute* "test/02/t0217a.sh"
+               (("export TZ")
+                "export TZ\nLC_ALL=POSIX\nexport LC_ALL"))
+
+             (setenv "SH" (which "sh"))
+             #t)))))
+    (native-inputs (list bison-3.0
+                         ;; For building the documentation:
+                         groff
+                         ;; For the tests:
+                         sharutils
+                         ;; One test wants rsh.  However there is no rsh server
+                         ;; running in the build environment and so far as I'm
+                         ;; aware, it cannot be started without root.
+                         ;; This test is therefore just skipped.
+                         ;; ("inetutils" ,inetutils)
+                         ed))
+    (home-page (string-append "https://web.archive.org/web/20140727122520/"
+                              "http://miller.emu.id.au/pmiller/software/cook/"))
+    (synopsis "Tool for constructing files")
+    (description "Cook is a tool for constructing files.  It is given a set of
+files to create, and recipes of how to create them.  In any non-trivial program
+there will be prerequisites to performing the actions necessary to creating
+any file, such as include files.  Cook provides a mechanism to define these.")
+    (license gpl3+)))
@@ -50,7 +50,6 @@
 ;;; Copyright © 2024, 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2025 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2025 Philippe Swartvagher <phil.swart@gmx.fr>
-;;; Copyright © 2025 Murilo <murilo@disroot.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -103,7 +102,6 @@
  #:use-module (gnu packages disk)
  #:use-module (gnu packages documentation)
  #:use-module (gnu packages fontutils)
-  #:use-module (gnu packages freedesktop)
  #:use-module (gnu packages gcc)
  #:use-module (gnu packages gl)
  #:use-module (gnu packages glib)
@@ -123,12 +121,10 @@
  #:use-module (gnu packages python)
  #:use-module (gnu packages python-build)
  #:use-module (gnu packages python-check)
-  #:use-module (gnu packages python-xyz)
  #:use-module (gnu packages pkg-config)
  #:use-module (gnu packages popt)
  #:use-module (gnu packages pretty-print)
  #:use-module (gnu packages pulseaudio)
-  #:use-module (gnu packages samba)
  #:use-module (gnu packages sdl)
  #:use-module (gnu packages tls)
  #:use-module (gnu packages tex)
@@ -333,31 +329,6 @@ This project is maintained by Kitware in support of ITK, the Insight
 Segmentation and Registration Toolkit.")
  (license license:asl2.0)))

-(define-public collada-dom
-  (package
-    (name "collada-dom")
-    (version "2.5.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/rdiankov/collada-dom.git")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1npz3yynv02g7w70c39zqn5w0g4sb438bmkkw0x7gj8cknjnwv9z"))
-       (patches (search-patches "collada-dom-boost.patch"))))
-    (build-system cmake-build-system)
-    (arguments (list #:tests? #f))      ; No tests present
-    (native-inputs (list pkg-config))
-    (inputs (list boost libxml2 minizip zlib))
-    (home-page "https://github.com/rdiankov/collada-dom")
-    (synopsis "COLLADA DOM C++ library")
-    (description "COLLADA-DOM is a C++ library for loading
-and saving COLLADA documents that can contain 2D, 3D, physics
-and other types of content.")
-    (license license:expat)))
-
 (define-public cpp-utilities
  (package
    (name "cpp-utilities")
@@ -976,7 +947,7 @@ library for SIMD (Single Instruction, Multiple Data) with runtime dispatch.")
 (define-public hyprgraphics
  (package
    (name "hyprgraphics")
-    (version "0.5.0")
+    (version "0.4.0")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -987,7 +958,7 @@ library for SIMD (Single Instruction, Multiple Data) with runtime dispatch.")
              (snippet #~(substitute* "CMakeLists.txt" (("libjxl_cms") "")))
              (sha256
               (base32
-                "1l8yfnv1vs6iqnh7r73yyfkbl8l61mqpmpyhri65sqwvplkgw41i"))))
+                "1jii9l9qbksp6x1vwbm84a985hy9q9xcpl703bliprd5rkpi6w96"))))
    (build-system cmake-build-system)
    (native-inputs (list gcc-15 pkg-config))
    (inputs (list cairo
@@ -1011,7 +982,7 @@ utilities used across the hypr* ecosystem.")
 (define-public hyprlang
  (package
    (name "hyprlang")
-    (version "0.6.8")
+    (version "0.6.7")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -1020,7 +991,7 @@ utilities used across the hypr* ecosystem.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "06wiizy73f0x6zj1ar878gm1w9zam1gmgjw0ybixj3qag0gxqv34"))))
+                "0n64jq9jdabyx76sax0fb45jg92708488733c2m6zsf84r6nv2g7"))))
    (build-system cmake-build-system)
    (arguments
     (list
@@ -1045,7 +1016,7 @@ language used in Hyprland.")
 (define-public hyprutils
  (package
    (name "hyprutils")
-    (version "0.11.0")
+    (version "0.10.4")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -1054,7 +1025,7 @@ language used in Hyprland.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "1ymiqzncppdik8lw3ad7xaqig6c7bjcy7crcwbq3rjfk2hrc8rmc"))))
+                "08b65pssaci780rgb5qgqc61zvbxmb9qda4gb58j8nh9yi3ya0jx"))))
    (build-system cmake-build-system)
    (arguments
     (list
@@ -1077,102 +1048,6 @@ language used in Hyprland.")
 ecosystem.")
    (license license:bsd-3)))

-(define-public hyprtoolkit
-  (package
-    (name "hyprtoolkit")
-    (version "0.5.3")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/hyprwm/hyprtoolkit")
-                    (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "0jjb1bf55270r3qc3fzxd1l3ahqsbgs948z46qi9niapa3gx1zli"))))
-    (build-system cmake-build-system)
-    (arguments (list #:tests? #f)) ; No tests in Release build type
-    (native-inputs (list pkg-config hyprwayland-scanner))
-    (inputs
-      (list aquamarine
-            cairo
-            googletest
-            hyprgraphics
-            hyprlang
-            hyprutils
-            iniparser
-            mesa
-            libglvnd
-            libxkbcommon
-            pango
-            pixman
-            wayland
-            wayland-protocols))
-    (home-page "https://github.com/hyprwm/hyprtoolkit")
-    (synopsis "Modern C++ Wayland-native GUI toolkit")
-    (description "This package provides a C++ toolkit for making wayland GUI
-apps.")
-    (license license:bsd-3)))
-
-(define-public hyprwire
-  (package
-    (name "hyprwire")
-    (version "0.2.1")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/hyprwm/hyprwire")
-                    (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "0rzclhk42x9im9n6fz2bj98l9lb7jhl3vijvck4rj6yhb80kvli0"))))
-    (build-system cmake-build-system)
-    (arguments (list #:tests? #f)) ; There are no tests
-    (native-inputs (list pkg-config gcc-15))
-    (inputs
-      (list hyprutils
-            libffi
-            pugixml))
-    (home-page "https://github.com/hyprwm/hyprwire")
-    (synopsis "Fast and consistent wire protocol for IPC")
-    (description "This package provides a fast and consistent wire protocol,
-and its implementation.  This is essentially a method for processes to talk to
-each other.")
-    (license license:bsd-3)))
-
-(define-public hyprland-guiutils
-  (package
-    (name "hyprland-guiutils")
-    (version "0.2.1")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/hyprwm/hyprland-guiutils")
-                    (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "0x5757ch8rvgbph66fkf5cg39r37isvfy450429746xmajsy0qa7"))))
-    (build-system cmake-build-system)
-    (arguments (list #:tests? #f)) ; There are no tests
-    (native-inputs (list pkg-config gcc-15))
-    (inputs
-      (list aquamarine
-            cairo
-            hyprgraphics
-            hyprlang
-            hyprtoolkit
-            hyprutils
-            mesa
-            libxkbcommon
-            pixman))
-    (home-page "https://github.com/hyprwm/hyprland-guiutils")
-    (synopsis "Hyprland GUI utilities")
-    (description "This package provides GUI utilities for hyprland.  It is the
-successor of hyprland-qtutils.")
-    (license license:bsd-3)))
-
 (define-public xsimd-benchmark
  (package
    (inherit xsimd)
@@ -1318,32 +1193,6 @@ collision) and the extra storage is linear with respect to the number of
 keys.")
      (license license:asl2.0))))

-(define-public glaze
-  (package
-    (name "glaze")
-    (version "7.0.1")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/stephenberry/glaze")
-                    (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1plzxrpk470yqm0pzdw5ghc39jvcafn2xj90hk4gpy7r82wvwfhs"))))
-    (build-system cmake-build-system)
-    (arguments
-      (list #:tests? #f
-            #:configure-flags
-            ;; Building tests require fetching external libraries
-            #~(list "-DBUILD_TESTING=OFF")))
-    (home-page "https://github.com/stephenberry/glaze")
-    (synopsis "Fast, in memory, JSON and reflection library for modern C++")
-    (description "Glaze is an in-memory JSON and reflection library for modern
-C++.  It also provides support for BEVE, CBOR, CSV, MessagePack, TOML, YAML,
-and EETF.")
-    (license license:expat)))
-
 (define-public json-dto
  (package
    (name "json-dto")
@@ -3373,11 +3222,8 @@ syntax with variables, conditions, functions and more.")
  (package
    (inherit jsonnet)
    (name "python-jsonnet")
-    (build-system pyproject-build-system)
-    (arguments
-     (list #:test-flags #~(list "--ignore=case_studies/")))
-    (native-inputs (modify-inputs (package-native-inputs jsonnet)
-                     (append python-pyyaml python-pytest python-setuptools)))
+    (build-system python-build-system)
+    (arguments '())
    (synopsis "Python bindings for Jsonnet, the data templating language")
    (description "This package provides a Python library named @code{_jsonnet}
 which can evaluate Jsonnet files and expressions.")))
@@ -21,7 +21,7 @@
 ;;; Copyright © 2020 pukkamustard <pukkamustard@posteo.net>
 ;;; Copyright © 2021 Ellis Kenyő <me@elken.dev>
 ;;; Copyright © 2021 Maxime Devos <maximedevos@telenet.be>
-;;; Copyright © 2021, 2022, 2025 Brendan Tildesley <mail@brendan.scot>
+;;; Copyright © 2021, 2022 Brendan Tildesley <mail@brendan.scot>
 ;;; Copyright © 2022 Allan Adair <allan@adair.no>
 ;;; Copyright © 2022, 2024-2025 Maxim Cournoyer <maxim@guixoic.coop>
 ;;; Copyright © 2022 Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org>
@@ -30,7 +30,6 @@
 ;;; Copyright © 2024, 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2025 Ashish SHUKLA <ashish.is@lostca.se>
 ;;; Copyright © 2025 Robin Templeton <robin@guixotic.coop>
-;;; Copyright © 2026 Hennadii Stepanov <hebasto@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -1582,7 +1581,7 @@ non-encrypted files.")
 (define-public cryfs
  (package
    (name "cryfs")
-    (version "1.0.1")
+    (version "0.11.4")
    (source
     (origin
       (method url-fetch)
@@ -1590,53 +1589,52 @@ non-encrypted files.")
             "https://github.com/cryfs/cryfs/releases/download/"
             version "/cryfs-" version ".tar.xz"))
       (sha256
-        (base32 "1va8l8yfyi895604i8npq2b5ha0ixiqydlrq2nck2106w52wrm3s"))
-       (patches (search-patches
-                 ;; https://github.com/cryfs/cryfs/pull/494
-                 "cryfs-boost-1.88-fix.patch"
-                 ;; https://github.com/cryfs/cryfs/pull/500
-                 "cryfs-boost-1.89-fix.patch"))))
+        (base32 "0a48qijfrd02ianp19x3kz24w1pgigmlxdr5nks0gag7z5b2s7m7"))))
    (build-system cmake-build-system)
    (arguments
     '(#:modules ((guix build cmake-build-system)
                  (guix build utils)
                  (srfi srfi-1))
       #:configure-flags
-       ;; Note: This also disables checking for security issues.
-       '("-DCRYFS_UPDATE_CHECKS=OFF"
-         "-DBUILD_TESTING=ON")
-       ;; crypto++ is still bundled: https://github.com/cryfs/cryfs/issues/369
+        ;; Note: This also disables checking for security issues.
+       `("-DCRYFS_UPDATE_CHECKS=OFF"
+         ;; This helps us use some dependencies from Guix instead of conan.
+         ;; crypto++ is still bundled: https://github.com/cryfs/cryfs/issues/369
+         ;; Googletest is also since I wasn't sure how to unbundle that.
+         ,(string-append "-DDEPENDENCY_CONFIG=" (getcwd)
+                         "/cmake-utils/DependenciesFromLocalSystem.cmake"))
       #:phases
       (modify-phases %standard-phases
         (add-before 'configure 'fix-up
           (lambda* (#:key tests? #:allow-other-keys)
-             (chdir "..") ; We end up in .github somehow
+             ;; Remove junk directory that breaks the build
+             (chdir "..") (delete-file-recursively ".circleci")
             ;; Install documentation with Guix defaults.
             (substitute* "doc/CMakeLists.txt"
               (("CONFIGURATIONS Release")
                "CONFIGURATIONS Release RelWithDebInfo"))
-             ;; Disable Fuse tests.
-             (substitute* "test/cryfs-cli/CMakeLists.txt"
-               (("CliTest_IntegrityCheck.cpp") "")
-               (("CliTest_Setup.cpp") "")
-               (("CliTest_WrongEnvironment.cpp") "")
-               (("CryfsUnmountTest.cpp") ""))))
+             (when tests?
+               (substitute* "CMakeLists.txt"
+                 (("option.BUILD_TESTING .build test cases. OFF.")
+                  "option(BUILD_TESTING \"build test cases\" ON)")))))
         (replace 'check
           (lambda* (#:key tests? #:allow-other-keys)
             (when tests?
-               (setenv "HOME" "/tmp")
-               (let ((tests (find-files "test/" "-test$")))
-                 ;; SignalHandler/SignalCatcher tests fails
-                 ;; Fuse tests can't run in build env.
+               (let ((tests (find-files "." "-test$")))
+                 ;; XXX: Disable failing tests. Unfortunately there are a
+                 ;; few. Some only fail in the build environment due to
+                 ;; FUSE not being available.
                 (for-each invoke
                           (lset-difference string-contains
                                            tests
                                            '("cpp-utils-test"
+                                              "cryfs-cli-test"
+                                              "blobstore-test"
                                              "fspp-test"))))))))))
    (native-inputs
-     (list googletest pkg-config python-wrapper))
+     (list pkg-config python-wrapper))
    (inputs
-     (list boost curl fuse-2 range-v3 spdlog))
+     (list boost-1.83 curl fuse-2 range-v3 spdlog))
    (home-page "https://www.cryfs.org/")
    (synopsis "Encrypted FUSE filesystem for the cloud")
    (description "CryFS encrypts your files, so you can safely store them anywhere.
@@ -1645,8 +1643,7 @@ others.  CryFS creates an encrypted userspace filesystem that can be mounted
 via FUSE without root permissions.  It is similar to EncFS, but provides
 additional security and privacy measures such as hiding file sizes and directory
 structure.  However CryFS is not considered stable yet by the developers.")
-    (license license:lgpl3+)
-    (properties `((tunable? . #t)))))
+    (license license:lgpl3+)))

 (define-public b3sum
  (package
@@ -1715,27 +1712,6 @@ SunMD5, sha1crypt, NT, bsdicrypt, bigcrypt, and descrypt.")
    (home-page "https://github.com/besser82/libxcrypt")
    (license license:lgpl2.1)))

-(define-public libxcrypt-without-failure-tokens
-  ;; This version of libxcrypt is used for guile-2.2.4, which is used in Guix
-  ;; v1.0.0 and thus needs to be supported for guix time-machine.
-  ;;
-  ;; Guile uses the 'crypt' hashing function that used to be provided by glibc,
-  ;; but was moved to libxcrypt around glibc 2.39.  However, the crypt function
-  ;; in libxcrypt works differently for invalid salt values: libxcrypt returnns
-  ;; the failure token "*0" for (crypt "pass" "$X$abc"), where glibc raised
-  ;; "Invalid argument" (EINVAL).  The --disable-failure-tokens flag lets
-  ;; libxcrypt behave in the same way as glibc.
-  ;;
-  ;; Guile 2.2.4 explicitly checks for the glibc behavior of crypt, and thus
-  ;; needs libxcrypt to be compiled with --disable-failure-tokens.
-  (hidden-package
-   (package/inherit libxcrypt
-     (name "libxcrypt-without-failure-tokens")
-     (arguments
-      (substitute-keyword-arguments (package-arguments libxcrypt)
-        ((#:configure-flags flags #~'())
-         #~(cons* "--disable-failure-tokens" #$flags)))))))
-
 (define-public keychain
  (package
    (name "keychain")
@@ -1810,31 +1786,3 @@ configured to start gpg-agent.")
 signatures used by the Estonian ID card infrastructure.  This library allows
 for creation and reading of DigiDoc files.")
    (license license:lgpl2.1+)))
-
-(define-public osslsigncode
-  (package
-    (name "osslsigncode")
-    (version "2.11")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/mtrojnar/osslsigncode")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "17vzkrv4qzjrjinjlgk8fbimkzd5b5akkpangkpn8cdficxgibxr"))))
-    (build-system cmake-build-system)
-    (arguments
-     (list
-      #:parallel-tests? #f))
-    (inputs (list openssl zlib))
-    (native-inputs (list python-cryptography python-minimal-wrapper))
-    (home-page "https://github.com/mtrojnar/osslsigncode")
-    (synopsis
-     "Authenticode signing for PE, CAB, CAT, MSI, APPX and script files")
-    (description
-     "osslsigncode is a small tool that implements part of the
-functionality of the Microsoft tool signtool.exe - more exactly the Authenticode
-signing and timestamping.  It is based on OpenSSL.")
-    (license license:gpl3+)))
@@ -623,10 +623,11 @@ should only be used as part of the Guix cups-pk-helper service.")
    (build-system gnu-build-system)
    (arguments
     (list
-      #:imported-modules %pyproject-build-system-modules
+      #:imported-modules `((guix build python-build-system)
+                           ,@%default-gnu-imported-modules)
      #:modules '((guix build gnu-build-system)
                  (guix build utils)
-                  ((guix build pyproject-build-system) #:prefix py:))
+                  ((guix build python-build-system) #:prefix python:))
      #:configure-flags
      #~(list "--disable-imageProcessor-build"
              (string-append "--prefix=" #$output)
@@ -647,103 +648,102 @@ should only be used as part of the Guix cups-pk-helper service.")
              "--enable-qt5"
              "--disable-qt4")
      #:phases
-      (with-extensions (list (pyproject-guile-json))
-        #~(modify-phases %standard-phases
-            (add-after 'unpack 'set-gcc-14-cflags
-              ;; We set CFLAGS here because adding setting it in
-              ;; #:configure-flags or #:make-flags does not work.
-              (lambda _
-                (substitute* "Makefile.in"
-                  (("CFLAGS = @CFLAGS@" all)
-                   (string-append all
-                                  " -Wno-error=attributes"
-                                  " -Wno-error=implicit-function-declaration"
-                                  " -Wno-error=implicit-int"
-                                  " -Wno-error=incompatible-pointer-types"
-                                  " -Wno-error=int-conversion"
-                                  " -Wno-error=return-mismatch")))))
-            (add-after 'unpack 'fix-hard-coded-file-names
-              (lambda* (#:key inputs outputs #:allow-other-keys)
-                (let ((out #$output)
-                      ;; FIXME: use merged ppds (I think actually only
-                      ;; drvs need to be merged).
-                      (cupsdir #$(this-package-input "cups-minimal")))
-                  (substitute* (find-files "." "\\.py$")
-                    ;; Refer to the correct default configuration file name.
-                    (("/etc/hp/hplip.conf")
-                     (string-append out "/etc/hp/hplip.conf")))
-                  (substitute* "base/g.py"
-                    (("'/usr/share;[^']*'")
-                     (string-append "'" cupsdir "/share'"))
-                    (("'/etc/hp/hplip.conf'")
-                     (string-append "'" out "/etc/hp/hplip.conf" "'")))
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'set-gcc-14-cflags
+            ;; We set CFLAGS here because adding setting it in
+            ;; #:configure-flags or #:make-flags does not work.
+            (lambda _
+              (substitute* "Makefile.in"
+                (("CFLAGS = @CFLAGS@" all)
+                 (string-append all
+                                " -Wno-error=attributes"
+                                " -Wno-error=implicit-function-declaration"
+                                " -Wno-error=implicit-int"
+                                " -Wno-error=incompatible-pointer-types"
+                                " -Wno-error=int-conversion"
+                                " -Wno-error=return-mismatch")))))
+          (add-after 'unpack 'fix-hard-coded-file-names
+            (lambda* (#:key inputs outputs #:allow-other-keys)
+              (let ((out #$output)
+                    ;; FIXME: use merged ppds (I think actually only
+                    ;; drvs need to be merged).
+                    (cupsdir #$(this-package-input "cups-minimal")))
+                (substitute* (find-files "." "\\.py$")
+                  ;; Refer to the correct default configuration file name.
+                  (("/etc/hp/hplip.conf")
+                   (string-append out "/etc/hp/hplip.conf")))
+                (substitute* "base/g.py"
+                  (("'/usr/share;[^']*'")
+                   (string-append "'" cupsdir "/share'"))
+                  (("'/etc/hp/hplip.conf'")
+                   (string-append "'" out "/etc/hp/hplip.conf" "'")))

-                  (substitute* "Makefile.in"
-                    (("[[:blank:]]check-plugin\\.py[[:blank:]]") " ")
-                    ;; FIXME Use beginning-of-word in regexp.
-                    (("[[:blank:]]plugin\\.py[[:blank:]]") " ")
-                    (("/usr/include/libusb-1.0")
-                     (search-input-directory inputs "/include/libusb-1.0"))
-                    (("hplip_statedir =.*$")
-                     ;; Don't bail out while trying to create
-                     ;; /var/lib/hplip.  We can safely change its value
-                     ;; here because it's hard-coded in the code anyway.
-                     "hplip_statedir = $(prefix)\n")
-                    (("hplip_confdir = /etc/hp")
-                     ;; This is only used for installing the default config.
-                     (string-append "hplip_confdir = " out "/etc/hp"))
-                    (("halpredir = /usr/share/hal/fdi/preprobe/10osvendor")
-                     ;; We don't use hal.
-                     (string-append "halpredir = " out
-                                    "/share/hal/fdi/preprobe/10osvendor"))
-                    (("rulesdir = /etc/udev/rules.d")
-                     ;; udev rules will be merged by base service.
-                     (string-append "rulesdir = " out "/lib/udev/rules.d"))
-                    (("rulessystemdir = /usr/lib/systemd/system")
-                     ;; We don't use systemd.
-                     (string-append "rulessystemdir = " out "/lib/systemd/system"))
-                    (("/etc/sane.d")
-                     (string-append out "/etc/sane.d"))))))
-            (add-after 'install 'move-sane-config-to-dll.d
-              (lambda _
-                ;; move dll.conf to dll.d - the directory intended for 3rd-party
-                ;; backend configurations.
-                (let ((dll.d (string-append #$output "/etc/sane.d/dll.d"))
-                      (dll.conf (string-append #$output "/etc/sane.d/dll.conf")))
-                  (mkdir-p dll.d)
-                  (rename-file dll.conf (string-append dll.d "/hpaio")))))
-            (add-after 'install 'install-models-dat
-              (lambda* (#:key outputs #:allow-other-keys)
-                (install-file "data/models/models.dat"
-                              (string-append #$output "/share/hplip/data/models"))))
+                (substitute* "Makefile.in"
+                  (("[[:blank:]]check-plugin\\.py[[:blank:]]") " ")
+                  ;; FIXME Use beginning-of-word in regexp.
+                  (("[[:blank:]]plugin\\.py[[:blank:]]") " ")
+                  (("/usr/include/libusb-1.0")
+                   (search-input-directory inputs "/include/libusb-1.0"))
+                  (("hplip_statedir =.*$")
+                   ;; Don't bail out while trying to create
+                   ;; /var/lib/hplip.  We can safely change its value
+                   ;; here because it's hard-coded in the code anyway.
+                   "hplip_statedir = $(prefix)\n")
+                  (("hplip_confdir = /etc/hp")
+                   ;; This is only used for installing the default config.
+                   (string-append "hplip_confdir = " out "/etc/hp"))
+                  (("halpredir = /usr/share/hal/fdi/preprobe/10osvendor")
+                   ;; We don't use hal.
+                   (string-append "halpredir = " out
+                                  "/share/hal/fdi/preprobe/10osvendor"))
+                  (("rulesdir = /etc/udev/rules.d")
+                   ;; udev rules will be merged by base service.
+                   (string-append "rulesdir = " out "/lib/udev/rules.d"))
+                  (("rulessystemdir = /usr/lib/systemd/system")
+                   ;; We don't use systemd.
+                   (string-append "rulessystemdir = " out "/lib/systemd/system"))
+                  (("/etc/sane.d")
+                   (string-append out "/etc/sane.d"))))))
+          (add-after 'install 'move-sane-config-to-dll.d
+            (lambda _
+              ;; move dll.conf to dll.d - the directory intended for 3rd-party
+              ;; backend configurations.
+              (let ((dll.d (string-append #$output "/etc/sane.d/dll.d"))
+                    (dll.conf (string-append #$output "/etc/sane.d/dll.conf")))
+                (mkdir-p dll.d)
+                (rename-file dll.conf (string-append dll.d "/hpaio")))))
+          (add-after 'install 'install-models-dat
+            (lambda* (#:key outputs #:allow-other-keys)
+              (install-file "data/models/models.dat"
+                            (string-append #$output "/share/hplip/data/models"))))
          (add-after 'install 'wrap-binaries
-              ;; Scripts in /bin are all symlinks to .py files in /share/hplip.
-              ;; Symlinks are immune to the Python build system's 'WRAP phase,
-              ;; and the .py files can't be wrapped because they are reused as
-              ;; modules.  Replacing the symlinks in /bin with copies and
-              ;; wrapping them also doesn't work (“ModuleNotFoundError:
-              ;; No module named 'base'”).  Behold: a custom WRAP-PROGRAM.
-              (lambda* (#:key inputs outputs #:allow-other-keys)
-                (let* ((bin (string-append #$output "/bin"))
-                       (site (py:site-packages inputs outputs)))
-                  (with-directory-excursion bin
-                    (for-each
-                     (lambda (file)
-                       (let ((target (readlink file)))
-                         (delete-file file)
-                         (with-output-to-file file
-                           (lambda _
-                             (format #t
-                                     "#!~a~@
+            ;; Scripts in /bin are all symlinks to .py files in /share/hplip.
+            ;; Symlinks are immune to the Python build system's 'WRAP phase,
+            ;; and the .py files can't be wrapped because they are reused as
+            ;; modules.  Replacing the symlinks in /bin with copies and
+            ;; wrapping them also doesn't work (“ModuleNotFoundError:
+            ;; No module named 'base'”).  Behold: a custom WRAP-PROGRAM.
+            (lambda* (#:key inputs outputs #:allow-other-keys)
+              (let* ((out (assoc-ref outputs "out"))
+                     (bin (string-append out "/bin"))
+                     (site (python:site-packages inputs outputs)))
+                (with-directory-excursion bin
+                  (for-each (lambda (file)
+                              (let ((target (readlink file)))
+                                (delete-file file)
+                                (with-output-to-file file
+                                  (lambda _
+                                    (format #t
+                                            "#!~a~@
                                           export GUIX_PYTHONPATH=\"~a:~a\"~@
                                           exec -a \"$0\" \"~a/~a\" \"$@\"~%"
-                                     (which "bash")
-                                     site
-                                     (getenv "GUIX_PYTHONPATH")
-                                     bin target)))
-                         (chmod file #o755)))
-                              (find-files "." (lambda (file stat)
-                                                (eq? 'symlink (stat:type stat)))))))))))))
+                                            (which "bash")
+                                            site
+                                            (getenv "GUIX_PYTHONPATH")
+                                            bin target)))
+                                (chmod file #o755)))
+                            (find-files "." (lambda (file stat)
+                                              (eq? 'symlink (stat:type stat))))))))))))
    ;; Note that the error messages printed by the tools in the case of
    ;; missing dependencies are often downright misleading.
    ;; TODO: hp-toolbox still fails to start with:
@@ -147,7 +147,7 @@ Refresh}in-DRAM mitigations effectively and as such can trigger bit flips.")
           python-msgspec
           python-platformdirs
           python-psutil
-           python-pydantic
+           python-pydantic-2
           python-pygit2
           python-tabulate
           python-zstandard))
@@ -1,7 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2022 Antero Mejr <antero@mailbox.org>
 ;;; Copyright © 2025 Maxim Cournoyer <maxim@guixotic.coop>
-;;; Copyright © 2025 Andreas Enge <andreas@enge.fr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -22,7 +21,6 @@
  #:use-module ((guix licenses) #:prefix license:)
  #:use-module (guix build-system cmake)
  #:use-module (guix download)
-  #:use-module (guix gexp)
  #:use-module (guix packages)
  #:use-module (gnu packages)
  #:use-module (gnu packages algebra)
@@ -68,6 +66,7 @@
           glpk
           graphicsmagick
           gsl
+           hdf4-alt
           hdf5
           libgeotiff
           libjpeg-turbo
@@ -84,9 +83,6 @@
           udunits
           wxwidgets
           zlib))
-    (arguments
-      (list
-        #:configure-flags #~(list "-DHDF=OFF"))) ; keep default "-DHDF5=ON"
    (home-page "https://gnudatalanguage.github.io/")
    (synopsis "Compiler for GDL, an IDL-compatible programming language")
    (description
@@ -837,7 +837,7 @@ they exist.")
           python-httpx
           python-jinja2
           python-nodeenv
-           python-pydantic
+           python-pydantic-2
           python-tomlkit
           python-typing-extensions))
    (home-page "https://github.com/RobertCraigie/prisma-client-py")
@@ -1326,9 +1326,8 @@ Language.")
                           "--testcase-timeout=40"
                           "--suite-timeout=600"
                           "--parallel" (number->string (if parallel-tests?
-                                                            ;; See guix/guix#5680.
-                                                            (min 64 (parallel-job-count))
-                                                            1))
+                                                          (parallel-job-count)
+                                                          1))
                           ;; Skip the replication tests: they are very I/O
                           ;; intensive and frequently causes indeterministic
                           ;; failures even on powerful hardware.
@@ -1406,7 +1405,6 @@ as a drop-in replacement of MySQL.")

 (define-public mariadb-embedded
  (package/inherit mariadb
-    (name "mariadb-embedded")
    (arguments
     (substitute-keyword-arguments (package-arguments mariadb)
       ((#:configure-flags flags)
@@ -2325,6 +2323,34 @@ for example from a shell script.")
 which uses SQL to describe changes.")
    (license license:x11)))

+(define-public sqlcrush
+  ;; Unfortunately, there is no proper upstream release and may never be.
+  (let ((commit "502a583e97a84efdeb48e59f1bfe403daa9681ee")
+        (revision "2"))
+    (package
+      (name "sqlcrush")
+      (version (git-version "0.1.5" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/coffeeandscripts/sqlcrush")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "0x2q4m9ryw68kifalnm3x4bv9v2xrc2ffsiap8m9wnw6lf1h05la"))))
+      (build-system python-build-system)
+      (inputs
+       (list python-psycopg2 python-pymysql python-sqlalchemy))
+      (home-page "https://github.com/coffeeandscripts/sqlcrush")
+      (synopsis "Text console-based database viewer and editor")
+      (description
+       "SQLcrush lets you view and edit a database directly from the text
+console through an ncurses interface.  You can explore each table's structure,
+browse and edit the contents, add and delete entries, all while tracking your
+changes.")
+      (license license:gpl3+)))) ; no headers, see README.md
+
 (define-public tdb
  (package
    (name "tdb")
@@ -3687,7 +3713,7 @@ can autogenerate peewee models using @code{pwiz}, a model generator.")
 (define-public python-pypika-tortoise
  (package
    (name "python-pypika-tortoise")
-    (version "0.6.3")
+    (version "0.3.2")
    (source
     (origin
       (method git-fetch)
@@ -3696,17 +3722,10 @@ can autogenerate peewee models using @code{pwiz}, a model generator.")
              (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "0czxc4im7iik9igqzwvxfjbyn66avmr8a1bcvcsxpzd22ywiycis"))))
+        (base32 "1pz7i9vgjwzzvacjjkvr5xbcmphn52xv993zbks602is844k0pp0"))))
    (build-system pyproject-build-system)
-    (arguments
-     (list
-      ;; tests: 904 passed, 1 deselected
-      #:test-flags
-      ;; FileNotFoundError: [Errno 2] No such file or directory: 'uvx'
-      #~(list "--deselect=tests/test_poetry_add.py::test_added_by_poetry_v2")))
    (native-inputs
-     (list python-pdm-backend
-           python-pytest))
+     (list python-poetry-core python-pytest))
    (home-page "https://github.com/tortoise/pypika-tortoise")
    (synopsis "Pypika fork for tortoise-orm")
    (description "Pypika-tortoise is a fork of pypika which has been
@@ -3871,47 +3890,47 @@ of PyMySQL.  @code{aiomysql} tries to preserve the same API as the
 (define-public python-tortoise-orm
  (package
    (name "python-tortoise-orm")
-    (version "0.25.3")
+    (version "0.22.2")
    (source
     (origin
       (method git-fetch)
       (uri (git-reference
-              (url "https://github.com/tortoise/tortoise-orm")
-              (commit version)))
+             (url "https://github.com/tortoise/tortoise-orm")
+             (commit version)))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "1b1a20cnhaj7rcdp5l1r5nvd6x1amybgynwpd3cnskpvzqjinsyl"))))
+        (base32 "1xzwywvb3898hm41vwkzn785ziqprxh6lcf0lpmrgfcsc9qnnhzk"))))
    (build-system pyproject-build-system)
    (arguments
     (list
-      ;; tests: 1280 passed, 104 skipped, 4 xfailed, 9 warnings
      #:test-flags
-      #~(list "--numprocesses" (number->string (min 8 (parallel-job-count)))
-              "--ignore=tests/benchmarks/"
-              ;; FileNotFoundError: [Errno 2] No such file or directory: 'uvx'
-              "--deselect=tests/test_version.py::test_added_by_poetry_v2")))
+      #~(list "-k" (string-join
+                    (list "not test_enum"  ; Fixed in the next release.
+                          ;; tortoise.exceptions.OperationalError
+                          "test_delete"
+                          "test_delete_limit"
+                          "test_delete_limit_order_by"
+                          "test_update_with_limit_ordering")
+                    " and not "))))
    (native-inputs
-     (list python-cython
+     (list python-asyncodbc
           python-fastapi
-           python-pdm-backend
-           python-pydantic
-           python-pytest
-           python-pytest-xdist))
+           python-poetry-core
+           python-psycopg
+           python-psycopg-pool
+           python-pydantic-2
+           python-pyodbc
+           python-pytest))
    (propagated-inputs
-     (list python-aiosqlite
-           python-anyio
+     (list python-aiomysql
+           python-aiosqlite
+           python-asyncmy
+           python-asyncpg
+           python-ciso8601
           python-iso8601
           python-pypika-tortoise
           python-pytz
-           ;; [optional]
-           python-aiomysql     ;tortoise/backends/mysql/client.py
-           python-asyncodbc    ;tortoise/backends/odbc/client.py
-           python-asyncpg      ;tortoise/backends/asyncpg/client.py
-           python-ciso8601
-           python-orjson
-           python-psycopg      ;tortoise/backends/psycopg/client.py
-           python-psycopg-pool ;
-           python-pyodbc       ;tortoise/backends/oracle/client.py
+           python-rapidjson
           python-uvloop))
    (home-page "https://github.com/tortoise/tortoise-orm")
    (synopsis "Asynchronous Object Relational Mapper (ORM) for Python")
@@ -3971,7 +3990,7 @@ similarity distances for scementic search using embeddings.")
    (native-inputs
     (list python-cryptography
           python-pdm-backend
-           python-pydantic
+           python-pydantic-2
           python-pydantic-settings
           python-pytest
           python-pytest-asyncio
@@ -4323,6 +4342,27 @@ patterns, designed for efficient and high-performing database access, adapted
 into a simple and Pythonic domain language.")
    (license license:expat)))

+(define-public python-sqlalchemy-stubs
+  (package
+    (name "python-sqlalchemy-stubs")
+    (version "0.4")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "sqlalchemy-stubs" version))
+       (sha256
+        (base32
+         "1bppjmv7v7m0q8gwg791pgxbx4ay7mna0zq204pn9vw28kfxcrf6"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     (list python-mypy python-typing-extensions))
+    (home-page "https://github.com/dropbox/sqlalchemy-stubs")
+    (synopsis "SQLAlchemy stubs and mypy plugin")
+    (description "This package contains type stubs and a mypy plugin to
+provide more precise static types and type inference for SQLAlchemy
+framework.")
+    (license license:asl2.0)))
+
 (define-public python-sqlalchemy-utils
  (package
    (name "python-sqlalchemy-utils")
@@ -5097,6 +5137,9 @@ reasonable substitute.")
     "This package provides a Python interface to the Redis key-value store.")
    (license license:expat)))

+(define-deprecated-package python-aioredis
+  python-redis)
+
 (define-public python-rq
  (package
    (name "python-rq")
@@ -5181,13 +5224,13 @@ is designed to have a low barrier to entry.")
 (define-public python-sqlparse
  (package
    (name "python-sqlparse")
-    (version "0.5.5")
+    (version "0.5.3")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "sqlparse" version))
       (sha256
-        (base32 "13pj7ylwm8w35nd8hz64grx5sk69qxk01lqh7gvgv1c51fdll3g2"))))
+        (base32 "0wljxh3lh2zndy7amziwd3572cwwbmzzq6yyvgn1c2vayn3pgxh9"))))
    (build-system pyproject-build-system)
    (native-inputs
     (list python-pytest
@@ -5455,6 +5498,138 @@ language-bindings for structure manipulation.  It also provides IPC and common
 algorithm implementations.")
    (license license:asl2.0)))

+(define-public apache-arrow-for-ceph
+  (package
+    (name "apache-arrow")
+    (version "6.0.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/apache/arrow")
+             (commit (string-append "apache-arrow-" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "0mcw361akqw4sxnnpnr9c9v1zk4hphk6gcq763pcb19yzljh88ig"))))
+    (build-system cmake-build-system)
+    (arguments
+     `(#:tests? #f
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'enter-source-directory
+           (lambda _ (chdir "cpp")))
+         (add-after 'unpack 'set-env
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* "cpp/src/parquet/parquet.pc.in"
+               (("includedir=\\$\\{prefix\\}/")
+                "includedir="))
+             (substitute* "cpp/cmake_modules/ThirdpartyToolchain.cmake"
+               (("set\\(xsimd_SOURCE.*") ""))
+             (setenv "BOOST_ROOT" (assoc-ref inputs "boost"))
+             (setenv "BROTLI_HOME" (assoc-ref inputs "brotli"))
+             (setenv "FLATBUFFERS_HOME" (assoc-ref inputs "flatbuffers"))
+             (setenv "RAPIDJSON_HOME" (assoc-ref inputs "rapidjson")))))
+       #:build-type "Release"
+       #:configure-flags
+       (list "-DARROW_PYTHON=ON"
+             "-DARROW_GLOG=ON"
+             ;; Parquet options
+             "-DARROW_PARQUET=ON"
+             "-DPARQUET_BUILD_EXECUTABLES=ON"
+             ;; The maintainers disallow using system versions of
+             ;; jemalloc:
+             ;; https://issues.apache.org/jira/browse/ARROW-3507. This
+             ;; is unfortunate because jemalloc increases performance:
+             ;; https://arrow.apache.org/blog/2018/07/20/jemalloc/.
+             "-DARROW_JEMALLOC=OFF"
+
+             ;; The CMake option ARROW_DEPENDENCY_SOURCE is a global
+             ;; option that instructs the build system how to resolve
+             ;; each dependency. SYSTEM = Finding the dependency in
+             ;; system paths using CMake's built-in find_package
+             ;; function, or using pkg-config for packages that do not
+             ;; have this feature
+             "-DARROW_DEPENDENCY_SOURCE=SYSTEM"
+             "-Dxsimd_SOURCE=SYSTEM"
+
+             "-DARROW_RUNTIME_SIMD_LEVEL=NONE"
+             "-DARROW_SIMD_LEVEL=NONE"
+             "-DARROW_PACKAGE_KIND=Guix"
+
+             ;; Split output into its component packages.
+             (string-append "-DCMAKE_INSTALL_PREFIX="
+                            (assoc-ref %outputs "lib"))
+             (string-append "-DCMAKE_INSTALL_RPATH="
+                            (assoc-ref %outputs "lib")
+                            "/lib")
+             (string-append "-DCMAKE_INSTALL_BINDIR="
+                            (assoc-ref %outputs "out")
+                            "/bin")
+             (string-append "-DCMAKE_INSTALL_INCLUDEDIR="
+                            (assoc-ref %outputs "include")
+                            "/share/include")
+
+             "-DARROW_WITH_SNAPPY=ON"
+             "-DARROW_WITH_ZLIB=ON"
+             "-DARROW_WITH_ZSTD=ON"
+             "-DARROW_WITH_LZ4=ON"
+             "-DARROW_COMPUTE=ON"
+             "-DARROW_CSV=ON"
+             "-DARROW_DATASET=ON"
+             "-DARROW_FILESYSTEM=ON"
+             "-DARROW_HDFS=ON"
+             "-DARROW_JSON=ON"
+             ;; Arrow Python C++ integration library (required for
+             ;; building pyarrow). This library must be built against
+             ;; the same Python version for which you are building
+             ;; pyarrow. NumPy must also be installed. Enabling this
+             ;; option also enables ARROW_COMPUTE, ARROW_CSV,
+             ;; ARROW_DATASET, ARROW_FILESYSTEM, ARROW_HDFS, and
+             ;; ARROW_JSON.
+             "-DARROW_PYTHON=ON"
+
+             ;; Building the tests forces on all the
+             ;; optional features and the use of static
+             ;; libraries.
+             "-DARROW_BUILD_TESTS=OFF"
+             "-DBENCHMARK_ENABLE_GTEST_TESTS=OFF"
+             ;;"-DBENCHMARK_ENABLE_TESTING=OFF"
+             "-DARROW_BUILD_STATIC=OFF")))
+    (inputs
+     (list boost
+           brotli
+           bzip2
+           double-conversion
+           gflags
+           glog
+           grpc
+           protobuf
+           python
+           python-numpy
+           rapidjson
+           re2
+           snappy
+           xsimd))
+    ;; These are all listed under Requires.private in arrow.pc
+    (propagated-inputs
+     (list (list apache-thrift "lib")
+           lz4
+           utf8proc
+           zlib
+           (list zstd "lib")))
+    (native-inputs
+     (list pkg-config))
+    (outputs '("out" "lib" "include"))
+    (home-page "https://arrow.apache.org/")
+    (synopsis "Columnar in-memory analytics")
+    (description "Apache Arrow is a columnar in-memory analytics layer
+designed to accelerate big data.  It houses a set of canonical in-memory
+representations of flat and hierarchical data along with multiple
+language-bindings for structure manipulation.  It also provides IPC and common
+algorithm implementations.")
+    (license license:asl2.0)))
+
 (define-public python-pyarrow
  (package
    (inherit apache-arrow)
@@ -5526,41 +5701,52 @@ other traditional Python scientific computing packages.")
 (define-public python-fastparquet
  (package
    (name "python-fastparquet")
-    (version "2025.12.0")
+    (version "2024.11.0")
    (source
     (origin
+       ;; Fastparquet uses setuptools-scm to find the current version. This
+       ;; only works when we use the PyPI tarball, which does not contain
+       ;; tests. Instead, we use the git-fetch method and set the version via
+       ;; envar.
       (method git-fetch)
       (uri (git-reference
-              (url "https://github.com/dask/fastparquet")
-              (commit version)))
+             (url "https://github.com/dask/fastparquet")
+             (commit version)))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "15zd2khsazrbi6p4lzbwp2x96sk2zk2adxj3905wac9xzwlkbvrc"))))
+        (base32 "0dhmyag06d073g1q58npbcikr9hjd6jgf05721gkl6m1gsprv7hq"))))
    (build-system pyproject-build-system)
    (arguments
     (list
-      ;; tests: 382 passed, 124 skipped, 2 warnings
      #:test-flags
      #~(list "--numprocesses" (number->string (parallel-job-count)))
      #:phases
      #~(modify-phases %standard-phases
-          (add-after 'unpack 'remove-dependencies-on-git
+          (add-after 'unpack 'relax-requirements
            (lambda _
              (substitute* "setup.py"
-                (("^.*\"git\", \"status\".*$") ""))))
-          (add-before 'build 'set-version
+                ;; Remove dependencies on git.
+                (("^.*\"git\", \"status\".*$") "")
+                ;; Guix is only compatible with a single version of numpy
+                ;; at a time. We can safely remove this dependency.
+                (("'oldest-supported-numpy'") ""))))
+          (add-before 'build 'pretend-version
+            ;; The version string is usually derived via setuptools-scm, but
+            ;; without the git metadata available, the version string is set
+            ;; to '0.0.0'.
            (lambda _
              (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)))
-          (add-before 'check 'remove-local-source
+          (add-before 'check 'build-cython-extensions
+            ;; Cython extensions need to be built for the check phase.
            (lambda _
-              (copy-recursively "fastparquet/test" "test")
-              (delete-file-recursively "fastparquet"))))))
+              (invoke "python" "setup.py" "build_ext" "--inplace"))))))
    (native-inputs
     (list python-cython
           python-pytest
           python-pytest-xdist
           python-setuptools
-           python-setuptools-scm))
+           python-setuptools-scm
+           python-wheel))
    (propagated-inputs
     (list python-cramjam
           python-fsspec
@@ -5900,7 +6086,7 @@ a Gtk.Grid Widget.")
 (define-public sqlitebrowser
  (package
    (name "sqlitebrowser")
-    (version "3.13.1")
+    (version "3.13.0")
    (source
     (origin
       (method git-fetch)
@@ -5909,30 +6095,17 @@ a Gtk.Grid Widget.")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "0615yks1krwjw4l1xxahn9j6qbd7cs8dxza7kc73hc5wr0xng5kf"))
+        (base32 "0v4a59lgqng9hqvbc2k504aclinpwpk8hi6ckirbr6m1pnf26kfr"))
       (modules '((guix build utils)))
       (snippet
        '(begin
-           ;; Delete bundled dependencies, available as Guix packages.
-           (for-each delete-file-recursively
-                     (list "libs/json"
-                           "libs/qcustomplot-source"
-                           "libs/qhexedit"
-                           "libs/qscintilla"))
-           ;; Patch #includes to be able to use Guix's nlohmann-json
-           (with-directory-excursion "src"
-             (substitute* (list "RemoteCommitsModel.h"
-                                "RemoteLocalFilesModel.h"
-                                "RemoteModel.h"
-                                "RemotePushDialog.cpp"
-                                "RemoteNetwork.cpp"
-                                "RemoteDock.cpp"
-                                "ExportDataDialog.cpp"
-                                "EditDialog.cpp")
-               (("json\\.hpp") "nlohmann/json.hpp")))))))
+           (delete-file-recursively "libs/qcustomplot-source/")
+           (delete-file-recursively "libs/qhexedit/")
+           (delete-file-recursively "libs/qscintilla")))))
    (build-system qt-build-system)
    (arguments
     (list #:configure-flags
+           ;; TODO: Unbundle json (nlohmann-json).
           #~(list (string-append "-DQSCINTILLA_INCLUDE_DIR="
                                  #$(this-package-input "qscintilla")
                                  "/include/Qsci")
@@ -5944,9 +6117,8 @@ a Gtk.Grid Widget.")
           qhexedit
           qscintilla
           qtbase-5
-           qtwayland-5
           sqlite))
-    (native-inputs (list nlohmann-json qttools-5))
+    (native-inputs (list qttools-5))
    (home-page "https://sqlitebrowser.org/")
    (synopsis "Visual database browser and editor for SQLite")
    (description "Sqlitebrowser lets you create, design, and edit database files
@@ -5959,7 +6131,7 @@ compatible with SQLite using a graphical user interface.")
 (define-public sqlitestudio
  (package
    (name "sqlitestudio")
-    (version "3.4.19")
+    (version "3.4.18")
    (source
     (origin
       (method git-fetch)
@@ -5968,7 +6140,7 @@ compatible with SQLite using a graphical user interface.")
             (commit version)))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "1fvyd2l1pbpl4jgn7vp8j2gsmw0sbfzidyv3k87xm6a2d7i680yc"))))
+        (base32 "1chsm4hxy483hz569ywacysg4dh9ijis060s4rgydkgk49bbb2si"))))
    (build-system gnu-build-system)
    (arguments
     (list
@@ -27,7 +27,6 @@
  #:use-module (gnu packages)
  #:use-module (gnu packages autotools)
  #:use-module (gnu packages boost)
-  #:use-module (gnu packages check)
  #:use-module (gnu packages gcc)
  #:use-module (gnu packages perl)
  #:use-module (gnu packages pkg-config)
@@ -170,78 +169,6 @@ and time-efficient for good hash functions.")
    (home-page "https://github.com/sparsehash/sparsehash")
    (license license:bsd-3)))

-(define-public parallel-hashmap
-  (package
-    (name "parallel-hashmap")
-    (version "2.0.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/greg7mdp/parallel-hashmap")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "167pvbd3bwyn69i1s4vp3badcr97xy10sga63bbj7jqhj09f2816"))))
-    (build-system cmake-build-system)
-    (arguments
-     (list
-      #:configure-flags
-      #~(list "-DPHMAP_BUILD_EXAMPLES=OFF")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'respect-tests?
-            (lambda* (#:key tests? #:allow-other-keys)
-              ;; fix parallel-hashmap's build script not respecting #:tests?
-              (unless tests?
-                (substitute* "CMakeLists.txt"
-                  (("option\\(PHMAP_BUILD_TESTS.+$")
-                   "set(PHMAP_BUILD_TESTS OFF)\n")))))
-          (add-after 'unpack 'disable-gtest-download
-            (lambda _
-              ;; don't download googletest
-              (substitute* "CMakeLists.txt"
-                (("include\\(cmake/DownloadGTest.cmake\\)")
-                 (format #f
-                  "add_subdirectory(~a ./googletest-build EXCLUDE_FROM_ALL)"
-                  #+(package-source (this-package-native-input "googletest"))))))))))
-    ;; FIXME: specify that we depend on the gtest source, not the package itself
-    (native-inputs (list googletest))
-    (home-page "https://greg7mdp.github.io/parallel-hashmap/")
-    (synopsis "C++ implementation of efficient and concurrent hash maps")
-    (description
-     "parallel-hashmap provides a family of header-only, very fast and
-memory-friendly hashmap and btree containers for C++11 and above.
-
-It has the following characteristics:
-
-@itemize
-
-@item Drop-in replacement for std::unordered_map, std::unordered_set, std::map,
-and std::set with better performance.
-
-@item Requires C++11 compiler support and provides C++14 and C++17 APIs,
-including features like try_emplace.
-
-@item Highly efficent and faster than standard unordered containers,
-Boost implementations, or sparsepp alternatives.
-
-@item Memory-friendly: maintains low memory usage with a slight increase compared
-to sparsepp.
-
-@item Heterogeneous lookup support.
-
-@item Dump/load feature: for flat hash maps storing std::trivially_copyable data,
-the entire table can be dumped to disk and restored as a single array efficiently
-without hash computations. This is about 10 times faster than element-wise
-serialization but uses 10% to 60% extra disk space.
-
-@item Automatic support for boost::hash_value() and default hash functions for
-std::pair and std::tuple.
-
-@end itemize")
-    (license license:asl2.0)))
-
 (define-public ssdeep
  (package
    (name "ssdeep")
@@ -7,7 +7,6 @@
 ;;; Copyright © 2022, 2024 Jonathan Brielmaier <jonathan.brielmaier@web.de>
 ;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
 ;;; Copyright © 2025 Junker <dk@junkeria.club>
-;;; Copyright © 2026 Ricardo Wurmus <rekado@elephly.net>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -130,22 +129,6 @@ clients.")
      #:test-backend #~'unittest
      #:phases
      #~(modify-phases %standard-phases
-          (replace 'create-entrypoints
-            (lambda* (#:key inputs outputs #:allow-other-keys)
-              (let ((sitedir (site-packages inputs outputs))
-                    (interpreter (which "python"))
-                    (file-path (string-append #$output "/bin/xandikos")))
-                (mkdir-p (string-append #$output "/bin"))
-                (call-with-output-file file-path
-                  (lambda (port)
-                    (format port "#!~a -sP
-# Auto-generated entry point script.
-import sys
-import asyncio
-from xandikos.__main__ import main
-if __name__ == '__main__':
-    sys.exit(asyncio.run(main(sys.argv[1:])))~%" interpreter)))
-                (chmod file-path #o755))))
          (add-before 'check 'check-setup
            (lambda _
              (setenv "XANDIKOSPATH" (mkdtemp "/tmp/xandikospath-XXXXXX")))))))
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2018, 2020-2026 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2018, 2020-2025 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2018, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2020 Marius Bakke <marius@gnu.org>
 ;;; Copyright © 2023, 2024 Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org>
@@ -607,7 +607,7 @@ unpacking them into a directory which can eventually be chrooted into.")
                "0hw407fm5ylsf28b0vrwz7rm2r2rsgfwzajbkbn6n2b6kqhdjyy9"))))
    (build-system gnu-build-system)
    (native-inputs
-     (list autoconf automake gettext-minimal po4a-minimal))
+     (list autoconf automake gettext-minimal po4a))
    (home-page "https://packages.debian.org/unstable/debianutils")
    (synopsis "Miscellaneous shell utilities")
    (description
@@ -531,8 +531,8 @@ server and embedded PowerPC, and S390 guests.")

 (define-public qemu-for-aflplusplus
  (let ((base qemu-minimal)
-        (commit "60ebd5624c60589e276cf287516b925a9ee35b87")
-        (revision "1"))
+        (commit "790d2124fd054621d3c0d3ec31bea114b60601f9")
+        (revision "0"))
    (hidden-package
     (package
       (inherit base)
@@ -546,7 +546,7 @@ server and embedded PowerPC, and S390 guests.")
                              (recursive? #t)))
          (file-name (git-file-name name version))
          (sha256
-           (base32 "1vz7k1ssfnlimkpc01fqin27r2k4a23cwpxj2bbmsp7d3175bjbz"))))
+           (base32 "1l2kl8768l4mbkiaj63zn6gsdn3qpl3rg7s6h62rmd7599ar3xn3"))))
       (arguments
        (substitute-keyword-arguments (package-arguments base)
          ((#:configure-flags _ #~'())
@@ -610,7 +610,7 @@ server and embedded PowerPC, and S390 guests.")
  (package
    (inherit american-fuzzy-lop)
    (name "aflplusplus")
-    (version "4.35c")
+    (version "4.34c")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -619,7 +619,7 @@ server and embedded PowerPC, and S390 guests.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "0mwamvyv2ckfxrrns4cnhx9gf2dn9jjgi9dc1qp3cwjasbghg5lg"))))
+                "14pllv986zwzbqarbsif02k618yns4fvqd3br6irzfcwivpysqfa"))))
    (arguments
     (substitute-keyword-arguments (package-arguments american-fuzzy-lop)
       ((#:make-flags _ ''())
@@ -522,14 +522,14 @@ scheme.")
 (define-public ddrescue
  (package
    (name "ddrescue")
-    (version "1.30")
+    (version "1.29.1")
    (source
     (origin
      (method url-fetch)
      (uri (string-append "mirror://gnu/ddrescue/ddrescue-"
                          version ".tar.lz"))
      (sha256
-       (base32 "0hjmfj4g5m2w5xqd80mwx64acnc85clli4f1ryhqfv4x60nn4r12"))))
+       (base32 "0xfx0hg3kkc6d3z0z9g1ingg2bnzcp1vjspcl8spi016y1fx9myx"))))
    (build-system gnu-build-system)
    (arguments
     `(#:configure-flags (list (string-append "CXX=" ,(cxx-for-target)))))
@@ -203,13 +203,13 @@ your project into different processes.")
 (define-public python-django
  (package
    (name "python-django")
-    (version "5.2.9")
+    (version "5.2.8")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "django" version))
       (sha256
-        (base32 "15d45imlysz7wcm4azf6a9rjv19jxb953x8sav0fc9wcbvycrd8n"))))
+        (base32 "0zvc8p4brwbj4yy8jxcannjfnik2xh4vis04c3x2r6mvlmk4h993"))))
    (build-system pyproject-build-system)
    (arguments
     '(#:test-flags
@@ -295,8 +295,8 @@ any Web site.  Django focuses on automating as much as possible and adhering
 to the @dfn{don't repeat yourself} (DRY) principle.")
    (license license:bsd-3)
    (properties `((cpe-name . "django")
-                  ;; This CVE seems fixed since 5.2.1.
-                  (lint-hidden-cve . ("CVE-2025-32873"))))))
+                  ;; This CVE seems fixed since 4.2.1.
+                  (lint-hidden-cve . ("CVE-2023-31047"))))))

 (define-public python-django-4
  (package
@@ -695,7 +695,7 @@ them do this.")
 (define-public python-django-allauth
  (package
    (name "python-django-allauth")
-    (version "65.13.1")
+    (version "65.9.0")
    (source
     (origin
       (method git-fetch)
@@ -704,18 +704,16 @@ them do this.")
             (commit version)))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "1w98sd0hj96qgxqa6q7a80h5w800yshqlhli2pplkwb5bqkqwq5n"))))
+        (base32 "03a7175748533rw6h3grfpv86i3qb31ixw0kb2kj90gc77sh1sw2"))))
    (build-system pyproject-build-system)
    (arguments
     (list
-      ;; tests: 1812 passed, 9 warnings
      #:test-flags
      ;; XXX: KeyError: location
      #~(list "--ignore=allauth/socialaccount/providers/openid/tests.py")
      #:phases
      #~(modify-phases %standard-phases
          ;; FIXME: This should be fixed in python-xmlsec
-          ;; E   xmlsec.Error: (1, 'cannot load crypto library for xmlsec.')
          (add-before 'check 'pre-check
            (lambda* (#:key inputs #:allow-other-keys)
              (let ((lib (search-input-file inputs "lib/libxmlsec1-openssl.so")))
@@ -724,15 +722,13 @@ them do this.")
    (propagated-inputs
     (list python-asgiref
           python-django
-           ;; [optional]
           python-fido2
-           python-oauthlib
           python-openid
           python-pyjwt
-           python-python3-saml ;TODO: rename to Guix name format
-           python-pyyaml
           python-qrcode
-           python-requests))
+           python-requests
+           python-requests-oauthlib
+           python-python3-saml))
    (inputs (list xmlsec-openssl))
    (native-inputs
     (list tzdata-for-tests
@@ -1092,17 +1088,16 @@ entries, photos, book chapters, or anything else.")
 (define-public python-django-ninja
  (package
    (name "python-django-ninja")
-    (version "1.5.1")
+    (version "1.4.3")
    (source (origin
              (method url-fetch)
              (uri (pypi-uri "django_ninja" version))
              (sha256
               (base32
-                "1iqp3c4gxvskw1xdi9bqzpz2rw6779ydkd6czp3382fncj5adkba"))))
+                "0f5hgjkavvk1csb1yl34scqai3ljjhh93k5kbqm8s8hclry4fvg4"))))
    (build-system pyproject-build-system)
-    ;; tests: 670 passed, 1 skipped, 53 warnings
    (propagated-inputs
-     (list python-django python-pydantic))
+     (list python-django python-pydantic-2))
    (native-inputs
     (list python-flit-core
           python-psycopg2
@@ -2066,12 +2061,6 @@ image files already supported by it.")
       (sha256
        (base32 "06h4g50qy1h77b4n28xbyzl2wvsblzs9qi63d7kvvm9x8n8whz92"))))
    (build-system pyproject-build-system)
-    (arguments
-     (list
-      ;; Skip test that fails on later Python versions; code itself seems fine.
-      ;; See: <https://github.com/joke2k/django-environ/issues/574>.
-      #:test-flags
-      #~(list "-k" "not test_db_parsing")))
    (native-inputs (list python-pytest
                         python-setuptools
                         python-wheel))
@@ -33,7 +33,6 @@
  #:use-module (gnu packages autotools)
  #:use-module (gnu packages base)
  #:use-module (gnu packages bash)
-  #:use-module (gnu packages boost)
  #:use-module (gnu packages check)
  #:use-module (gnu packages compression)
  #:use-module (gnu packages gawk)
@@ -51,7 +50,6 @@
  #:use-module (gnu packages python)
  #:use-module (gnu packages python-build)
  #:use-module (gnu packages python-check)
-  #:use-module (gnu packages python-graphics)
  #:use-module (gnu packages python-web)
  #:use-module (gnu packages python-xyz)
  #:use-module (gnu packages qt)
@@ -297,50 +295,50 @@ and white.")
    (license license:gpl2)))

 (define-public didjvu
+  (let ((revision "0")
+        (commit "43e2735d0b3575ca04e82a427dca88bc68fa4931"))
    (package
      (name "didjvu")
-      (version "0.11.0")
+      (version (git-version "0.10.2" revision commit))
      (source
       (origin
         (method git-fetch)
         (uri (git-reference
-                ;; It's a fork of https://github.com/jwilk/didjvu, see:
-                ;; <https://github.com/FriedrichFroebel/didjvu/issues/47>.
-                (url "https://github.com/FriedrichFroebel/didjvu")
-                (commit version)))
+               (url "https://github.com/FriedrichFroebel/didjvu")
+               (commit commit)))
         (file-name (git-file-name name version))
         (sha256
-          (base32 "11z9daa5qfm8cqaxdywfvrnaxid33p7lidj7i8xzv30wyzxdr6zg"))))
+          (base32 "0ippf3hsjy13xj6pqnqr30dz8lsncsfcan2r1vbxfk1g602m3p4c"))))
      (build-system pyproject-build-system)
      (arguments
       (list
-        #:test-backend #~'unittest
-        #:test-flags
-        #~(list "discover" "--verbose" "--start-directory" "tests/")
+        ;; FIXME: Tests fail because they try to load the libxmp and pyexiv2
+        ;; modules that should not be enabled, as we only enable the gexiv2
+        ;; module.
+        #:tests? #f
        #:phases
        #~(modify-phases %standard-phases
+            (delete 'configure)
            (add-before 'check 'disable-failing-test
              (lambda _
                (substitute* "tests/test_ipc.py"
+                  ;; test_wait_signal gets stuck forever
+                  (("self\\._test_signal\\(name\\)")
+                   "return True")
                  ;; test_path fails to find a file it should have created
                  (("path = os\\.getenv\\('PATH'\\)")
                   "return True"))
-                (substitute* (list "tests/test_ipc.py" "tests/test_cli.py")
-                ;; XXX: See:
-                ;; <https://github.com/FriedrichFroebel/didjvu/issues/48>.
-                  (((string-append "(test_action_no_args|test_bad_action|"
-                                   "test_no_args|test_wait_signal)")
-                    all)
-                   (string-append "__off_" all)))))
+                (substitute* "tests/test_timestamp.py"
+                  ;; test_timezones fails with:
+                  ;; '2009-12-18T21:25:14Z' != '2009-12-18T22:25:14+01:00'
+                  (("samples = \\[" all)
+                   (string-append "return True\n        " all)))))
            (add-after 'wrap 'wrap-path
              (lambda* (#:key inputs #:allow-other-keys)
                (wrap-program (string-append #$output "/bin/didjvu")
                  `("PATH" ":" prefix
                    (,(dirname (search-input-file inputs "bin/ddjvu"))))))))))
-      (native-inputs
-       (list boost
-             tzdata-for-tests
-             python-setuptools))
+      (native-inputs (list python-setuptools))
      (inputs
       (list bash-minimal
             djvulibre
@@ -348,15 +346,14 @@ and white.")
             minidjvu
             python-gamera
             python-pillow
-             python-py3exiv2
             python-pygobject
-             python-xmp-toolkit))
+             python-wrapper))
      (synopsis "DjVu encoder with foreground/background separation")
      (description
       "@code{didjvu} uses the @code{Gamera} framework to separate the foreground
 and background layers of images, which can then be encoded into a DjVu file.")
      (home-page "https://jwilk.net/software/didjvu")
-      (license license:gpl2)))
+      (license license:gpl2))))

 (define-public ocrodjvu
  (let ((revision "0")
@@ -852,7 +852,7 @@ Extensions} (DNSSEC).")
 (define-public knot
  (package
    (name "knot")
-    (version "3.5.3")
+    (version "3.5.2")
    (source
     (origin
       (method git-fetch)
@@ -861,7 +861,7 @@ Extensions} (DNSSEC).")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "19nasxzkv805am7skkzs0vnqxjrdc4dqm67crdgqj36jli24zs3s"))
+        (base32 "0z1h22qjhjvjlli66nq3bl5nskdid6g86jk7v37y02vwy5xq93rm"))
       (patches
        (search-patches "knot-remove-runtime-deps.patch"))
       (modules '((guix build utils)))
@@ -435,6 +435,7 @@ the Net to search for documents which are not on the local system.")
           qtwayland
           qtwebchannel
           qtwebengine
+           qtx11extras
           xcb-util-keysyms))
    (home-page "https://zealdocs.org/")
    (synopsis "Offline documentation browser inspired by Dash")
@@ -1,6 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2023, 2024 Greg Hogan <code@greghogan.com>
-;;; Copyright © 2023, 2025, 2026 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2023, 2025 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2024 Felix Gruber <felgru@posteo.net>
 ;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
 ;;; Copyright © 2024, 2025 Ekaitz Zarraga <ekaitz@elenq.tech>
@@ -148,13 +148,13 @@ system.")
 (define-public r-duckdb
  (package
    (name "r-duckdb")
-    (version "1.4.3")
+    (version "1.4.2")
    (source
     (origin
       (method url-fetch)
       (uri (cran-uri "duckdb" version))
       (sha256
-        (base32 "0br7d7gadi0gbpd45syvig6zs1b0sl3vpn8wa272hs8jv4d73ar3"))
+        (base32 "1k2ks40mw7qviwwa53jv76bb48jxk9cfp6lrc06ripfifabd2pix"))
       ;; This package bundles the duckdb sources and builds a custom variant
       ;; of duckdb.  I'd be happy to link it with our duckdb library instead,
       ;; but it does not seem possible to do that.
@@ -143,14 +143,14 @@ with Microsoft Compiled HTML (CHM) files.")
 (define-public calibre
  (package
    (name "calibre")
-    (version "8.16.2")
+    (version "8.15.0")
    (source
     (origin
       (method url-fetch)
       (uri (string-append "http://download.calibre-ebook.com/" version
                           "/calibre-" version ".tar.xz"))
       (sha256
-        (base32 "0v0w5hi8h1fykf1v2dqcz9zafc7ffxlh5nj125sc0g7mai1x11q1"))
+        (base32 "1d2ygxf5srzdxc3jpngmq3zbz9plxnbzm4dzygpfd38szr5zwyss"))
       (modules '((guix build utils)))
       (snippet
        '(begin
@@ -168,18 +168,15 @@ with Microsoft Compiled HTML (CHM) files.")
                                "calibre-remove-test-unrar.patch"
                                "calibre-remove-test-import-modules.patch" ; TODO: fix test
                                ))))
-    (build-system pyproject-build-system)
+    (build-system python-build-system)
    (native-inputs
     (list bash-minimal
           cmake
           pkg-config
           python-flake8
           python-pyqt-builder
-           qtbase ; for qmake
-           xdg-utils
-           python-setuptools
-           python-tzdata
-           python-tzlocal))
+           qtbase                     ; for qmake
+           xdg-utils))
    (inputs
     (list bash-minimal
           espeak-ng
@@ -240,6 +237,9 @@ with Microsoft Compiled HTML (CHM) files.")
           uchardet))
    (arguments
     (list
+      ;; Calibre is using setuptools by itself, but the setup.py is not
+      ;; compatible with the shim wrapper (taken from pip) we are using.
+      #:use-setuptools? #f
      #:phases
      #~(modify-phases %standard-phases
          (add-after 'unpack 'patch-source
@@ -346,19 +346,6 @@ sip-include-dirs = [\""
            (lambda _
              (copy-recursively "man-pages"
                                (string-append #$output "/share/man"))))
-          ;; Calibre is using setuptools but the setup.py is not
-          ;; compatible with the shim wrapper (taken from pip) we are using.
-          (replace 'build
-            (lambda _
-              (invoke "python" "setup.py" "build")))
-          (replace 'install
-            (lambda _
-              (invoke "python" "setup.py" "install"
-                      (string-append "--prefix=" #$output))))
-          (replace 'check
-            (lambda* (#:key tests? #:allow-other-keys)
-              (when tests?
-                (invoke "python" "setup.py" "test"))))
          ;; The font TTF files are used in some miscellaneous tests, so we
          ;; unbundle them here to avoid patching the tests.
          (add-after 'install 'unbundle-font-liberation
@@ -454,8 +441,6 @@ accessing and converting various ebook file formats.")
          (replace 'install (assoc-ref gnu:%standard-phases 'install)))))
    (native-inputs
     (list qtbase-5))
-    (inputs
-     (list qtwayland-5))
    (synopsis "EBook reader")
    (description "This package provides InkBox eBook reader.")
    (license license:gpl3)))
@@ -748,18 +733,13 @@ format documents, with the following features:
  (package
    (name "shirah")
    (version "1.0.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/hallicopter/shirah-reader")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0df59bq71b9i78cws5z4cdgjdxj59dvz0x4wpnjpxz0g4wvvc55d"))))
-    (build-system pyproject-build-system)
-    (arguments (list #:tests? #f))      ; No tests.
-    (native-inputs (list python-setuptools))
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "shirah_reader" version))
+              (sha256
+               (base32
+                "0j15v435lz68c1mj5clfx5dmfyjc6jvvz2q8hqvv799mb2faj42y"))))
+    (build-system python-build-system)
    (propagated-inputs (list python-beautifulsoup4 python-ebooklib
                             python-syllables python-termcolor))
    (home-page "https://github.com/hallicopter/shirah-reader")
@@ -769,4 +749,4 @@ format documents, with the following features:
 display ebooks in the usual way or with Rapid Serial Visual Presentation, a
 method to enable speedreading by showing the text word by word at configurable
 speeds.")
-    (license license:gpl2+)))
+  (license license:gpl2+)))
@@ -295,7 +295,7 @@ frequently used words in American English.")
    (build-system qt-build-system)
    (arguments (list #:qtbase qtbase    ;qtbase 6
                     #:tests? #f))      ;packages has no tests
-    (inputs (list qtbase qtmultimedia qtwayland))
+    (inputs (list qtbase qtmultimedia))
    (home-page "https://www.tipp10.com/en/")
    (synopsis "Touch typing tutor")
    (description "Tipp10 is a touch typing tutor.  The ingenious thing about
@@ -603,6 +603,231 @@ about drilling time and correctness ratio is displayed.  The results are
 stored and user can review his performance in any time.")
      (license license:gpl2+))))

+(define-public anki
+  (package
+    (name "anki")
+    ;; Later versions have dependencies on npm packages not yet in Guix.
+    (version "2.1.16")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://apps.ankiweb.net/downloads/archive/anki-"
+                           version "-source.tgz"))
+       (sha256
+        (base32 "1gfr51rnllkyzli73p4r51h5ypzfa3m7lic3m3rzpywmqwrxs07k"))
+       (modules '((guix build utils)))
+       ;; Fix preferences error: <https://issues.guix.gnu.org/65506>.
+       (snippet '(substitute* "aqt/preferences.py"
+                   (("qc\\['collapseTime']/60\\.0" x)
+                    (format #f "int(~a)" x))
+                   (("qc\\['timeLim']/60\\.0" x)
+                    (format #f "int(~a)" x))))
+       (patches (search-patches "anki-mpv-args.patch"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:make-flags (list (string-append "PREFIX=" %output))
+       #:tests? #f                      ;no check target
+       #:modules ((guix build gnu-build-system)
+                  (guix build utils)
+                  (ice-9 match))
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'disable-update-check
+           ;; Don't ‘phone home’ unasked to check for updates.
+           (lambda _
+             (substitute* "aqt/update.py"
+               (("requests\\.post")
+                "throw.an.exception.instead"))
+             #t))
+         (delete 'configure)            ;no configure script
+         (add-after 'install 'wrap
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let ((bin (string-append (assoc-ref outputs "out") "/bin"))
+                   ;; List of paths to the site-packages directories of Python
+                   ;; library inputs.
+                   (site-packages
+                    (map (lambda (pyinput)
+                           (string-append
+                            (cdr pyinput)
+                            "/lib/python"
+                            ;; Calculate the python version to avoid breaking
+                            ;; with future 3.X releases.
+                            ,(version-major+minor
+                              (package-version python-wrapper))
+                            "/site-packages"))
+                         (filter (match-lambda
+                                   ((label . _)
+                                    (string-prefix? "python-" label)))
+                                 inputs))))
+               ;; PYTHONPATH is wrapped to avoid declaring Python libraries as
+               ;; propagated inputs.
+               (for-each (lambda (program)
+                           (wrap-program program
+                             `("PATH" prefix (,(string-append
+                                                (assoc-ref inputs "mpv")
+                                                "/bin")))
+                             `("GUIX_PYTHONPATH" = ,site-packages)))
+                         (find-files bin ".")))
+             #t)))))
+    (native-inputs
+     (list xdg-utils))
+    (inputs
+     `(("lame" ,lame)
+       ("mpv" ,mpv)
+       ("python" ,python-wrapper)
+       ("python-beautifulsoup4" ,python-beautifulsoup4)
+       ("python-decorator" ,python-decorator)
+       ("python-distro" ,python-distro)
+       ("python-jsonschema" ,python-jsonschema)
+       ("python-markdown" ,python-markdown)
+       ("python-pyaudio" ,python-pyaudio)
+       ;; `python-pyqtwebengine' must precede `python-pyqt' in PYTHONPATH.
+       ("python-pyqtwebengine" ,python-pyqtwebengine)
+       ("python-pyqt" ,python-pyqt)
+       ("python-requests" ,python-requests)
+       ("python-send2trash" ,python-send2trash)
+       ("python-sip" ,python-sip)
+       ;; `qtwebengine-5' is included in `pyqtwebengine', included here for easy
+       ;; wrapping.
+       ("qtwebengine-5" ,qtwebengine-5)))
+    (home-page "https://apps.ankiweb.net/")
+    (synopsis "Powerful, intelligent flash cards")
+    (description "Anki is a program which makes remembering things
+easy.  Because it's a lot more efficient than traditional study
+methods, you can either greatly decrease your time spent studying, or
+greatly increase the amount you learn.
+
+Anyone who needs to remember things in their daily life can benefit
+from Anki.  Since it is content-agnostic and supports images, audio,
+videos and scientific markup (via LaTeX), the possibilities are
+endless.  For example:
+@itemize
+@item Learning a language
+@item Studying for medical and law exams
+@item Memorizing people's names and faces
+@item Brushing up on geography
+@item Mastering long poems
+@item Even practicing guitar chords!
+@end itemize")
+    (license license:agpl3+)))
+
+(define-public t4k-common
+  (package
+    (name "t4k-common")
+    (version "0.1.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/tux4kids/t4kcommon")
+             (commit (string-append "upstream/" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "13q02xpmps9qg8zrzzy2gzv4a6afgi28lxk4z242j780v0gphchp"))
+       (patches (search-patches "t4k-common-libpng16.patch"))
+       (modules '((guix build utils)))
+       (snippet
+        `(begin
+           (substitute* "src/t4k_common.h"
+             (("char wrapped_lines") "extern char wrapped_lines"))
+           #t))))
+    (build-system cmake-build-system)
+    (arguments
+     `(#:tests? #f                      ;FIXME: cannot find how to run tests
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'set-paths 'set-sdl-paths
+           (lambda* (#:key inputs #:allow-other-keys)
+             (setenv "CPATH"
+                     (string-append
+                      (search-input-directory inputs "/include/SDL")
+                      ":" (or (getenv "CPATH") "")))))
+         (add-after 'unpack 'fix-andika-font-path
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* "src/t4k_sdl.c"
+               (("(/usr/share/.*?)/AndikaDesRevG\\.ttf")
+                (string-append (assoc-ref inputs "font-andika")
+                               "/share/fonts/truetype")))
+             #t)))))
+    (native-inputs
+     (list pkg-config))
+    (inputs
+     `(("font-andika" ,font-sil-andika)
+       ("libpng" ,libpng)
+       ("librsvg" ,(librsvg-for-system))
+       ("libxml2" ,libxml2)
+       ("sdl" ,(sdl-union (list sdl sdl-image sdl-mixer sdl-net sdl-pango)))))
+    (home-page "https://github.com/tux4kids/t4kcommon")
+    (synopsis "Library of code shared between TuxMath and TuxType")
+    (description "Tux4Kids-Common is a library of code shared between
+TuxMath and TuxType.")
+    (license license:gpl3+)))
+
+(define-public tuxmath
+  (package
+    (name "tuxmath")
+    (version "2.0.3")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/tux4kids/tuxmath")
+             (commit (string-append "upstream/" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1f1pz83w6d3mbik2h6xavfxmk5apxlngxbkh80x0m55lhniwkdxv"))
+       (modules '((guix build utils)))
+       ;; Unbundle fonts.
+       (snippet
+        `(begin
+           ;; Remove duplicate definition.
+           (substitute* "src/menu_lan.c"
+             (("lan_player_type.*MAX_CLIENTS\\];") ""))
+           (for-each delete-file (find-files "data/fonts" "\\.ttf$"))
+           #t))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:tests? #f                      ;no test
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'set-paths 'set-sdl-paths
+           (lambda* (#:key inputs #:allow-other-keys)
+             (setenv "CPATH"
+                     (string-append
+                      (search-input-directory inputs "/include/SDL")
+                      ":"
+                      (or (getenv "CPATH") "")))))
+         (add-after 'install 'install-desktop-file
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (apps (string-append out "/share/applications"))
+                    (pixmaps (string-append out "/share/pixmaps")))
+               (install-file "tuxmath.desktop" apps)
+               (for-each (lambda (f) (install-file f pixmaps))
+                         (find-files "data/images/icons/"
+                                     "tuxmath\\.(png|ico|svg)$"))
+               #t))))))
+    (native-inputs
+     (list pkg-config))
+    (inputs
+     `(("librsvg" ,(librsvg-for-system))
+       ("libxml2" ,libxml2)
+       ("sdl" ,(sdl-union (list sdl sdl-image sdl-mixer sdl-net sdl-pango)))
+       ("t4k-common" ,t4k-common)))
+    (home-page "https://github.com/tux4kids/tuxmath")
+    (synopsis "Educational math tutorial game")
+    (description "@emph{Tux, of Math Command} is an educational math
+tutorial game starring Tux, the Linux penguin, in which you play the
+part of Commander Tux, as he defends his friends from an attack of
+math equations.  Comets are crashing towards the friendly penguins in
+their igloos, and you must destroy the comets by solving their
+equations.
+
+TuxMath also includes Factoroids, a game that gives practice in
+factoring numbers and simplifying fractions, as well as zapping rocks
+floating through space.")
+    (license license:gpl3+)))
+
 (define-public libeb
  (package
    (name "libeb")
@@ -655,7 +880,6 @@ formats.")
           qtmultimedia-5
           qtquickcontrols2-5
           qtdeclarative-5
-           qtwayland-5
           qtwebchannel-5
           qtwebengine-5
           zlib))
@@ -104,7 +104,6 @@
  #:use-module (gnu packages ncurses)
  #:use-module (gnu packages networking)
  #:use-module (gnu packages ninja)
-  #:use-module (gnu packages parallel)
  #:use-module (gnu packages pkg-config)
  #:use-module (gnu packages pretty-print)
  #:use-module (gnu packages pulseaudio)
@@ -562,7 +561,7 @@ It aims to support Nintendo DSi and 3DS as well.")
             googletest
             pkg-config
             python-minimal
-             python-numpy-1))
+             python-numpy))
      (inputs
       (list alsa-lib
             ao
@@ -1111,7 +1110,6 @@ The following systems are supported:
             ncurses
             qtbase
             qtmultimedia
-             qtwayland
             sdl2
             sqlite
             zlib))
@@ -2006,7 +2004,7 @@ libretro API, based on Mupen64Plus.  It incorporates the following projects:
 (define-public retroarch-assets
  (package
    (name "retroarch-assets")
-    (version "1.22.0")
+    (version "1.20.0")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -2015,7 +2013,7 @@ libretro API, based on Mupen64Plus.  It incorporates the following projects:
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "04gbsn5lwc9ampyssl898v4p9myhwfqy3x7hyx9si8l1x9z60k6j"))))
+                "0ngbc2wmqgz5davan7rnvqapai5wc8j9afylff1yzlk3lgsjlv1x"))))
    (build-system gnu-build-system)
    (arguments
     (list #:tests? #f                  ;no test suite
@@ -2031,7 +2029,7 @@ generate the various User Experience (UX) environments.")
 (define-public libretro-core-info
  (package
    (name "libretro-core-info")
-    (version "1.22.2")
+    (version "1.21.1")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -2040,7 +2038,7 @@ generate the various User Experience (UX) environments.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "1csx200ajl6ncrhi20l9f9qjv73402w28lyi88lsly0j65rknz4v"))))
+                "12yramra6hd33g094krygq2a5h7mjkh0nh5d8qny4b6f61fxaxwk"))))
    (build-system copy-build-system)
    (arguments
     (list #:install-plan #~'(("." "lib/libretro/"
@@ -2058,7 +2056,7 @@ metadata about each known libretro core.  The snapshot is taken from the
 (define-public libretro-database
  (package
    (name "libretro-database")
-    (version "1.22.1")
+    (version "1.21.1")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -2067,7 +2065,7 @@ metadata about each known libretro core.  The snapshot is taken from the
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "03jb9gr11xiphnnwdqqk8k5g8s9s026k46dv94h67cshlbl59n52"))))
+                "1grkdg6k6dclwrh286dins4k50mp0wf3bvddikaspl309dldjrgw"))))
    (build-system gnu-build-system)
    (arguments (list #:tests? #f
                     #:make-flags #~(list (string-append "PREFIX=" #$output))))
@@ -2096,7 +2094,7 @@ Various scripts that are used to maintain the database files.
 (define-public retroarch-joypad-autoconfig
  (package
    (name "retroarch-joypad-autoconfig")
-    (version "1.22.0")
+    (version "1.21.1")
    (source
     (origin
       (method git-fetch)
@@ -2106,7 +2104,7 @@ Various scripts that are used to maintain the database files.
       (file-name (git-file-name name version))
       (sha256
        (base32
-         "0fcc15j6lblngkx0n85x68x01c4qc24xc0pw05gc5pg2xgg4m3wg"))))
+         "06mii4zpkrwxiw9qhfvjzri8q8fps1b96nkxp7px2w7cgdl4kg68"))))
    (build-system gnu-build-system)
    (arguments
     (list #:tests? #f                  ;no meaningful test suite
@@ -2826,7 +2824,7 @@ GLSL (@file{.slang}) shaders for use with RetroArch.")
 (define-public retroarch-minimal
  (package
    (name "retroarch-minimal")
-    (version "1.22.2")
+    (version "1.21.0")
    (source
     (origin
       (method git-fetch)
@@ -2857,7 +2855,7 @@ GLSL (@file{.slang}) shaders for use with RetroArch.")
       (patches (search-patches "retroarch-unbundle-spirv-cross.patch"))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "1xbipxg5g53f68cbki61qj86096l87x0mrwzbgrv6mcf3sif0y7v"))))
+        (base32 "17l3x77vd52g7zq62g3j1jxr51ksmdnxif1qh671qi19fsd19v1r"))))
    (build-system gnu-build-system)
    (arguments
     (list
@@ -2866,8 +2864,6 @@ GLSL (@file{.slang}) shaders for use with RetroArch.")
      #~(modify-phases %standard-phases
          (replace 'configure
            (lambda* (#:key inputs #:allow-other-keys)
-              (substitute* "input/bsv/uint32s_index.c"
-                (("#include <xxHash/xxhash\\.h>") "#include <xxhash.h>"))
              ;; Hard-code some store file names.
              (substitute* "gfx/common/vulkan_common.c"
                (("libvulkan.so")
@@ -2908,7 +2904,6 @@ GLSL (@file{.slang}) shaders for use with RetroArch.")
               ;; These are disabled to avoid requiring the bundled
               ;; dependencies.
               "--disable-7zip"
-               "--disable-chd"
               "--disable-cheevos"
               "--disable-crtswitchres"
               "--disable-discord"
@@ -2917,8 +2912,7 @@ GLSL (@file{.slang}) shaders for use with RetroArch.")
               "--disable-stb_font"
               "--disable-stb_image"
               "--disable-stb_vorbis"
-               "--disable-xdelta"
-               "--disable-zstd"))))))
+               "--disable-xdelta"))))))
    (native-inputs
     (list pkg-config
           wayland-protocols
@@ -2951,7 +2945,6 @@ GLSL (@file{.slang}) shaders for use with RetroArch.")
           v4l-utils
           vulkan-loader
           wayland
-           xxhash
           zlib))
    (native-search-paths
     (list (search-path-specification
@@ -3606,11 +3599,11 @@ improvements.")
      (license license:gpl2+))))

 (define-public pcsx2-patches
-  (let ((commit "10239de1539668c347e8e9478a3b13913808c0b2")
+  (let ((commit "2fdc835f0725b318efcdaae84db1c73a9139b6f6")
        (revision "0"))
    (package
      (name "pcsx2-patches")
-      (version (git-version "2025.12.11" revision commit))
+      (version (git-version "2025.10.24" revision commit))
      (source
       (origin
         (method git-fetch)
@@ -3619,7 +3612,7 @@ improvements.")
 	       (commit commit)))
         (file-name (git-file-name name version))
         (sha256
-          (base32 "07f18xrn60sizgjhq99rq1q69ay9pss00y8b4c3ky9i94xjfxq5x"))))
+          (base32 "0qn9jwk983hxzrf2x550wcb9l782618lm662w5fb6cw81bbrv5is"))))
      (build-system copy-build-system)
      (arguments
       (list
@@ -3651,88 +3644,27 @@ de-interlacing patches for use with PCSX2.")
       (file-name (git-file-name name version))
       (sha256
        (base32 "0nr53cjifqwnz3icxsj01yd3aw1vfsfxga4zz5zi8aqr175mvq27"))
-       (modules '((guix build utils)
-                  (ice-9 ftw)
-                  (srfi srfi-26)))
+       (modules '((guix build utils)))
       (snippet
        #~(begin
-            (substitute* "cmake/Pcsx2Utils.cmake"
-              (("(PCSX2_GIT_REV \")Unknown" _ prefix)
-               (string-append prefix #$version "-guix")))
-            (delete-file "3rdparty/include/Packet32.h") ;"not open source"
-            ;; XXX: 'delete-all-but' is copied from the turbovnc package.
-            (define (delete-all-but directory . preserve)
-              (with-directory-excursion directory
-                (let* ((pred (negate (cut member <>
-                                          (cons* "." ".." preserve))))
-                       (items (scandir "." pred)))
-                  (for-each (cut delete-file-recursively <>) items))))
-            (delete-all-but
-             "3rdparty"
-             ;; asl2.0 and cc0
-             "glad"                     ;Is tailored.
-             ;; bsd-3
-             "libchdr"                  ;Not packaged in guix.
-             "vixl"                     ;Not packaged in guix.
-             "xbyak"                    ;Just includes.
-             ;; bsd-4 (pcap) and bsd-2 (xxhash)
-             "include"                  ;Just includes.
-             ;; expat
-             "ccc"                      ;Is tailored.
-             "cubeb"                    ;Is tailored.
-             "discord-rpc"              ;Not packaged in guix.
-             "imgui"                    ;Is tailored.
-             "rapidyaml"                ;Not packaged in guix.
-             "rcheevos"                 ;Does not have a linkable binary.
-             "simpleini"                ;Is tailored (GetKeyCount).
-             "zydis"                    ;Could not link.
-             ;; gpl2+
-             "freesurround"             ;Unclear what upstream is.
-             ;; lgpl2.0+
-             "demangler"                ;Is tailored.
-             ;; public-domain
-             "lzma"                     ;Does not have a linkable library.
-             ;; silofl1.1
-             "promptfont")              ;Unclear what upstream is.
-            (substitute* "CMakeLists.txt"
-              (("add_subdirectory\\(3rdparty/googletest)")
-               "find_package(GTest REQUIRED)"))
-            (substitute* "cmake/SearchForStuff.cmake"
-              (("add_subdirectory\\(3rdparty/cpuinfo EXCLUDE_FROM_ALL\\)")
-               "find_package(cpuinfo REQUIRED)")
-              (("disable_compiler_warnings_for_target\\(cpuinfo\\)") "")
-              (("add_subdirectory\\(3rdparty/fast_float EXCLUDE_FROM_ALL\\)")
-               "find_package(FastFloat REQUIRED)")
-              (("add_subdirectory\\(3rdparty/fmt EXCLUDE_FROM_ALL\\)")
-               "find_package(fmt REQUIRED)")
-              (("disable_compiler_warnings_for_target\\(fmt\\)") "")
-              (("add_subdirectory\\(3rdparty/libzip EXCLUDE_FROM_ALL\\)")
-               "find_package(libzip REQUIRED)")
-              (("add_subdirectory\\(3rdparty/rapidjson EXCLUDE_FROM_ALL\\)")
-               "find_package(RapidJSON REQUIRED)")
-              (("add_subdirectory\\(3rdparty/soundtouch EXCLUDE_FROM_ALL\\)")
-               "pkg_check_modules(SoundTouch REQUIRED soundtouch)")
-              (("add_subdirectory\\(3rdparty/vulkan EXCLUDE_FROM_ALL\\)")
-               "find_package(VulkanMemoryAllocator REQUIRED)
-find_package(VulkanHeaders REQUIRED)"))
-            ;Specifically, line 213.
-            (substitute* "common/CMakeLists.txt"
-              (("fast_float") ""))
-            (substitute* "pcsx2/CMakeLists.txt"
-              (("SoundTouch::SoundTouch") "SoundTouch")
-              (("\
-target_link_libraries\\(PCSX2_FLAGS INTERFACE vulkan-headers\\)") ""))
-            (substitute* "pcsx2/Host/AudioStream.cpp"
-              (("SoundTouch.h") "soundtouch/SoundTouch.h"))))))
+            (substitute* "pcsx2/Pcsx2Config.cpp"
+	      (("Path::Canonicalize\\(Path::GetDirectory\\(program_path\\)\\);")
+	       "Path::Canonicalize(
+((std::string)Path::GetDirectory(program_path)).append(\"/../share/\"));"))
+            (delete-file-recursively "3rdparty/d3d12memalloc")
+            (delete-file-recursively "3rdparty/winpixeventruntime")
+            (delete-file-recursively "3rdparty/winwil")))))
    (build-system cmake-build-system)
    (arguments
     (list
+      #:parallel-build? #t
      #:configure-flags
      #~(list "-DCMAKE_C_COMPILER=clang"
              "-DCMAKE_CXX_COMPILER=clang++"
-              "-GNinja"
-              "-DPACKAGE_MODE=ON"
-              "-DUSE_LINKED_FFMPEG=ON")
+              "-DCMAKE_PREFIX_PATH=\"$PWD/deps\""
+              "-GNinja")
+      #:imported-modules `((guix build copy-build-system)
+                           ,@%cmake-build-system-modules)
      #:phases
      #~(modify-phases %standard-phases
          (replace 'build
@@ -3741,52 +3673,52 @@ target_link_libraries\\(PCSX2_FLAGS INTERFACE vulkan-headers\\)") ""))
          (replace 'check
            (lambda* (#:key tests? #:allow-other-keys)
              (when tests? (invoke "ninja" "unittests"))))
+          (replace 'install
+            (lambda* args
+              (apply
+               (assoc-ref (@ (guix build copy-build-system) %standard-phases)
+                          'install)
+               #:install-plan
+               '(("bin/pcsx2-qt" "bin/")
+                 ("bin/resources" "share/")
+                 ("bin/translations" "share/")
+                 ("../source/.github/workflows/scripts/linux/pcsx2-qt.desktop"
+                  "share/applications/"))
+               args)))
          (add-after 'install 'install-patches
-            (lambda _
-              (symlink
-               (search-input-file %build-inputs "/patches.zip")
-               (string-append
-                #$output "/share/PCSX2/resources/patches.zip")))))))
+            (lambda* (#:key inputs #:allow-other-keys)
+              (install-file (search-input-file %build-inputs "/patches.zip")
+                            (string-append #$output "/share/resources")))))))
    (inputs (list (module-ref
                   (resolve-interface '(gnu packages debug)) 'libbacktrace)
                  `(,zstd-1.5.7 "lib")
-                  cpuinfo
                  curl
                  dbus
                  eudev
-                  fast-float
                  ffmpeg
                  freetype
-                  fmt-11
                  kddockwidgets
+                  libaio
                  libjpeg-turbo
                  libpcap
-                  libpng-next
+                  libpng-for-pcsx2
                  libwebp
-                  libxi
                  libxrandr
-                  libzip
                  lz4
                  pcsx2-patches
-                  plutosvg
                  plutovg
+                  plutosvg
                  qtbase
                  qtdeclarative
                  qtsvg
                  qttools
-                  rapidjson
+                  qtwayland
                  sdl3
                  shaderc
-                  soundtouch
                  vulkan-headers
-                  wayland))
-    (native-inputs
-     (list clang-17
-           extra-cmake-modules
-           googletest
-           ninja
-           pkg-config
-           vulkan-memory-allocator))
+                  wayland
+                  libxi))
+    (native-inputs (list clang-17 extra-cmake-modules ninja pkg-config))
    (home-page "https://pcsx2.net")
    (synopsis "PlayStation 2 (PS2) emulator")
    (description
@@ -3795,17 +3727,7 @@ emulator.  Its purpose is to emulate the PS2's hardware, using a combination
 of MIPS CPU interpreters, recompilers and a virtual machine which manages
 hardware states and PS2 system memory.  This allows you to play PS2 games on
 your PC, with many additional features and benefits.")
-    (license (list license:gpl3+        ;main code
-                   ;; code in 3rdparty/
-                   license:asl2.0
-                   license:bsd-2
-                   license:bsd-3
-                   license:bsd-4
-                   license:cc0
-                   license:expat
-                   license:lgpl2.0+
-                   license:public-domain
-                   license:silofl1.1))))
+    (license license:gpl3+)))

 (define-public rpcs3
  ;; NB: When updating to a new release, don't forget to check if any more
@@ -42,12 +42,11 @@
 ;;; Copyright © 2024 Juliana Sims <juli@incana.org>
 ;;; Copyright © 2024 Nguyễn Gia Phong <cnx@loang.net>
 ;;; Copyright © 2025 Frederick Muriuki Muriithi <fredmanglis@gmail.com>
-;;; Copyright © 2025, 2026 nomike Postmann <nomike@nomike.com>
+;;; Copyright © 2025 nomike Postmann <nomike@nomike.com>
 ;;; Copyright © 2025 Matthew Elwin <elwin@northwestern.edu>
 ;;; Copyright © 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2025 Remco van 't Veer <remco@remworks.net>
 ;;; Copyright © 2025 bdunahu <bdunahu@operationnull.com>
-;;; Copyright © 2026 Cayetano Santos <csantosb@inventati.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -149,7 +148,6 @@
  #:use-module (gnu packages nettle)
  #:use-module (gnu packages networking)
  #:use-module (gnu packages node)
-  #:use-module (gnu packages oneapi)
  #:use-module (gnu packages openkinect)
  #:use-module (gnu packages parallel)
  #:use-module (gnu packages pcre)
@@ -867,7 +865,7 @@ required for Fritzing app.")
    (native-inputs
     (list pkg-config qttools-5))
    (inputs
-     (list kcoreaddons-5 kwidgetsaddons-5 qtbase-5 qtsvg-5 qtwayland-5 sqlite))
+     (list kcoreaddons-5 kwidgetsaddons-5 qtbase-5 qtsvg-5 sqlite))
    (home-page "https://qelectrotech.org/")
    (synopsis "CAD/CAE editor focusing on schematics drawing features")
    (description "QElectroTech, or QET in short, is a desktop application to
@@ -1588,20 +1586,19 @@ use on a given system.")
 (define-public libredwg
  (package
    (name "libredwg")
-    (version "0.13.3")
+    (version "0.12.5")
    (source
     (origin
       (method url-fetch)
       (uri (string-append "mirror://gnu/libredwg/libredwg-"
                           version ".tar.xz"))
       (sha256
-        (base32 "0vl1x20zw4nafw86f98w5i5sry7krvj20igzh6j7fivlibkzdwc3"))))
+        (base32 "1gginbl76vmpccjwx93cmg8ibap8l40swly3bjv7rhmdwv6ikpnk"))))
    (build-system gnu-build-system)
    (arguments
     (list
      #:configure-flags
      #~(list "--disable-bindings"
-              "--disable-write"         ;check fails, see README
              #$(string-append "CFLAGS="
                               " -Wno-error=implicit-function-declaration"))))
    (native-inputs
@@ -2049,7 +2046,7 @@ bindings for Python, Java, OCaml and more.")
 (define-public python-platypush
  (package
    (name "python-platypush")
-    (version "1.3.14")
+    (version "1.3.7")
    (source
     (origin
       (method git-fetch)
@@ -2058,12 +2055,19 @@ bindings for Python, Java, OCaml and more.")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "1nmpdcjamc2nw1kq4m4kvypmilvrq59xh099cnlg0hlkrly0kigc"))))
+        (base32 "0nh7107j4j0l65bsqpff0ar1609n5a5lh78d8wjsmylwyg9j9kyk"))))
    (build-system pyproject-build-system)
    (arguments
     (list
      #:phases
      #~(modify-phases %standard-phases
+          (add-after 'unpack 'relax-requirements
+            (lambda _
+              (substitute* "requirements.txt"
+                (("zipp>=3.19.1")
+                 "zipp")
+                (("urllib3>=2.2.2")
+                 "urllib3"))))
          (add-before 'check 'pre-check
            (lambda _
              (setenv "HOME" "/tmp"))))))
@@ -2480,6 +2484,60 @@ slicing software to x3g files for standalone 3D printing on common 3D
 printers.")
    (license license:gpl2+)))

+(define-public gnucap
+  (package
+    (name "gnucap")
+    (version "20171003")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://git.savannah.gnu.org/cgit/gnucap.git/snapshot/gnucap-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "16m09xa685qhj5fqq3bcgakrwnb74xhf5f7rpqkkf9fg8plzbb1g"))))
+    (build-system gnu-build-system)
+    (inputs
+     (list readline))
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (replace 'configure
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let ((out (assoc-ref outputs "out")))
+               ;; Set correct rpath so that gnucap finds libgnucap.so.
+               (substitute* (list "apps/configure" "lib/configure"
+                                  "main/configure" "modelgen/configure")
+                 (("LDFLAGS =")
+                  (string-append "LDFLAGS = -Wl,-rpath=" out "/lib")))
+               ;; gnucap uses a hand-written configure script that expects the
+               ;; --prefix argument to be the first argument passed to it.
+               (invoke "./configure" (string-append "--prefix=" out)))))
+         (replace 'check
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let ((out (assoc-ref outputs "out"))
+                   (libpath "../lib/O:../apps/O"))
+               (with-directory-excursion "tests"
+                 ;; Make test return non-zero exit code when a test fails.
+                 (substitute* "test"
+                   (("/bin/sh") "/bin/sh -e")
+                   (("\\|\\| echo \"\\*\\*\\*\\* \\$ii fails \\*\\*\\*\\*\"") ""))
+                 ;; Fix expected plugin search path for test c_attach.1.gc
+                 (substitute* "==out/c_attach.1.gc.out"
+                   (("/usr/local/lib/gnucap")
+                    (string-append libpath ":" out "/lib/gnucap")))
+                 ;; Set library path so that gnucap can find libgnucap.so
+                 ;; while running the tests.
+                 (setenv "LD_LIBRARY_PATH" libpath)
+                 (invoke "./test" "../main/O/gnucap" "" "test-output" "==out"))))))))
+    (home-page "https://www.gnu.org/software/gnucap/")
+    (synopsis "Mixed analog and digital circuit simulator")
+    (description "GNUcap is a circuit analysis package.  It offers a general
+purpose circuit simulator and can perform DC and transient analyses, fourier
+analysis and AC analysis.  The engine is designed to do true mixed-mode
+simulation.")
+    (license license:gpl3+)))
+
 (define-public cutter
  (package
    (name "cutter")
@@ -2585,7 +2643,7 @@ specification can be downloaded at @url{http://3mf.io/specification/}.")
 (define-public manifold
  (package
    (name "manifold")
-    (version "3.3.2")
+    (version "3.2.1")
    (source
     (origin
       (method git-fetch)
@@ -2594,9 +2652,9 @@ specification can be downloaded at @url{http://3mf.io/specification/}.")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "0bq1gzvhyp0b9v0q6magwf0yi9lzqgh3fj9104wqfvpl2skgzkg7"))))
+        (base32 "0fy78axwhlk3gpxhmac4gbyvsadky1kzqbh4cv5snahzmi4bixvp"))))
    (build-system cmake-build-system)
-    (inputs (list onetbb clipper2 assimp python-nanobind googletest))
+    (inputs (list tbb clipper2 assimp python-nanobind googletest))
    (arguments
     (list #:tests? #f
           ;; can be removed once emscripten is packaged
@@ -2713,51 +2771,28 @@ some well developed, easy to deploy and cross platform libraries.")
 (define-public python-pandapower
  (package
    (name "python-pandapower")
-    (version "3.3.0")
+    (version "2.14.11")
    (source
     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/e2nIEE/pandapower")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
+       (method url-fetch)
+       (uri (pypi-uri "pandapower" version ".zip"))
       (sha256
-        (base32 "01ybwvbzld202yhhi9l3djp1nr0k57lrqh7k5819n58brv3hcki9"))))
+        (base32 "139ahp08kci8asmv35bcibbnkfr5s1ff5j84n490s47ibsglk4yi"))))
    (build-system pyproject-build-system)
-    (arguments
-     (list
-      ;; tests: 1161 passed, 140 skipped, 23 xfailed, 11 xpassed, 4529 warnings
-      #:test-flags
-      #~(list "--numprocesses" (number->string (min 8 (parallel-job-count))))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'relax-requirements
-            (lambda _
-              (substitute* "pyproject.toml"
-                (("pandera~=0.26.1") "pandera~=0.27.1")))))))
-    (native-inputs
-     (list python-nbmake
-           python-pytest
-           python-pytest-xdist
-           python-setuptools))
-    (propagated-inputs
-     (list python-deepdiff
-           python-geojson
-           python-networkx
-           python-numpy
-           python-packaging
-           python-pandas
-           python-pandera
-           python-scipy
-           python-tqdm
-           python-typing-extensions
-           ;; [optional]
-           python-geopandas
-           python-lxml
-           python-matplotlib
-           python-openpyxl
-           python-pyproj
-           python-shapely))
+    (native-inputs (list python-pyproj
+                         python-pytest
+                         python-setuptools
+                         python-wheel
+                         unzip))
+    (propagated-inputs (list python-deepdiff
+                             python-geojson
+                             python-networkx
+                             python-numpy
+                             python-packaging
+                             python-pandas
+                             python-scipy
+                             python-tqdm
+                             python-typing-extensions))
    (home-page "https://www.pandapower.org/")
    (synopsis "Power system modelling and analysis")
    (description "@code{pandapower} is an easy to use network calculation
@@ -2982,7 +3017,7 @@ ontinuous-time and discret-time expressions.")
                    qtsvg-5
                    qtwayland-5
                    sanitizers-cmake
-                    onetbb))
+                    tbb))
      (native-inputs (list bison
                           extra-cmake-modules
                           flex
@@ -3019,73 +3054,80 @@ models in the STL and OFF file formats.")
      (license license:gpl2+))))

 (define-public pythonscad
-  (package
-    (inherit openscad)
-    (name "pythonscad")
-    (version "0.8.4")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/pythonscad/pythonscad")
-             (commit (string-append "v" version))
-             ;; Needed for libraries/MCAD, a library specific to OpenSCAD
-             ;; which is included as a submodule. All other libraries are
-             ;; deleted in the patch-source build phase.
-             (recursive? #t)))
-       (sha256
-        (base32 "0gnifi8is0dl00vir5nd1k76kkcavb62v115g34198lzqnwiy0fc"))
-       (modules '((guix build utils)))
-       (snippet #~(begin
-                    ;; Delete all unbundled libraries to replace them with
-                    ;; guix packages.
-                    (delete-file-recursively "submodules")
-                    (substitute* "CMakeLists.txt"
-                      ;; Remove bundled libraries from cmake.
-                      (("add_subdirectory\\(submodules\\)")
-                       ""))))
-       (file-name (git-file-name name version))))
-    (arguments
-     (substitute-keyword-arguments (package-arguments openscad)
-       ((#:configure-flags flags)
-        #~(begin
-            (use-modules (srfi srfi-1))
-            (append (remove (lambda (flag)
-                              (or (string-prefix? "-DOPENSCAD_VERSION=" flag)
-                                  (string-prefix? "-DOPENSCAD_COMMIT=" flag)))
-                            #$flags)
-                    (list "-DENABLE_LIBFIVE=ON" "-DUSE_BUILTIN_LIBFIVE=OFF"
-                          (string-append "-DOPENSCAD_VERSION="
-                                         #$version)
-                          (string-append "-DPYTHON_VERSION="
-                                         #$(version-major+minor (package-version
-                                                                 python)))))))
-       ((#:phases phases)
-        #~(modify-phases #$phases
-            (replace 'patch-source
-              (lambda* (#:key inputs #:allow-other-keys)
-                (substitute* "CMakeLists.txt"
-                  ;; Fix detection of EGL (see
-                  ;; https://github.com/openscad/openscad/issues/5880).
-                  (("target_link_libraries\\(OpenSCADLibInternal PUBLIC OpenGL::EGL\\)")
-                   "find_package(ECM REQUIRED NO_MODULE)
+  (let ((commit "92071afdffa6e2f6d99fe7e695c40044ec8aa16a")
+        (version "0.0.0")
+        (revision "5"))
+    (package
+      (inherit openscad)
+      (name "pythonscad")
+      (version (git-version version revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/pythonscad/pythonscad")
+               (commit commit)
+               ;; Needed for libraries/MCAD, a library specific to OpenSCAD
+               ;; which is included as a submodule. All other libraries are
+               ;; deleted in the patch-source build phase.
+               (recursive? #t)))
+         (sha256
+          (base32 "1ivjbcf52xzavyrld5xjii7yrqf27c244ndzvysrdaz53s06nk90"))
+         (modules '((guix build utils)))
+         (snippet #~(begin
+                      ;; Delete all unbundled libraries to replace them with
+                      ;; guix packages.
+                      (delete-file-recursively "submodules")
+                      (substitute* "CMakeLists.txt"
+                        ;; Remove bundled libraries from cmake.
+                        (("add_subdirectory\\(submodules\\)")
+                         ""))))
+         (file-name (git-file-name name version))))
+      (arguments
+       (substitute-keyword-arguments (package-arguments openscad)
+         ((#:configure-flags flags)
+          #~(begin
+              (use-modules (srfi srfi-1))
+              (append
+               (remove (lambda (flag)
+                         (or (string-prefix? "-DOPENSCAD_VERSION=" flag)
+                             (string-prefix? "-DOPENSCAD_COMMIT=" flag)))
+                       #$flags)
+               (list "-DENABLE_LIBFIVE=ON"
+                     "-DUSE_BUILTIN_LIBFIVE=OFF"
+                     (string-append "-DOPENSCAD_VERSION="
+                                    #$version)
+                     (string-append "-DOPENSCAD_COMMIT="
+                                    #$commit)
+                     (string-append "-DPYTHON_VERSION="
+                                    #$(version-major+minor
+                                       (package-version python)))))))
+         ((#:phases phases)
+          #~(modify-phases #$phases
+              (replace 'patch-source
+                (lambda* (#:key inputs #:allow-other-keys)
+                  (substitute* "CMakeLists.txt"
+                    ;; Fix detection of EGL (see
+                    ;; https://github.com/openscad/openscad/issues/5880).
+                    (("target_link_libraries\\(OpenSCAD PRIVATE OpenGL::EGL\\)")
+                     "find_package(ECM REQUIRED NO_MODULE)
        list(APPEND CMAKE_MODULE_PATH ${ECM_MODULE_PATH})
        find_package(EGL REQUIRED)
-        target_link_libraries(OpenSCADLibInternal PUBLIC EGL::EGL)")
-                  ;; Use the system sanitizers-cmake module.
-                  (("\\$\\{CMAKE_SOURCE_DIR\\}/submodules/sanitizers-cmake/cmake")
-                   (string-append (assoc-ref inputs "sanitizers-cmake")
-                                  "/share/sanitizers-cmake/cmake")))))))))
-    (inputs (modify-inputs (package-inputs openscad)
-              (append curl libfive)))
-    (synopsis "Script-based 3D modeling app with Python support")
-    (description
-     "PythonSCAD is a programmatic 3D modeling application.  It allows you
+        target_link_libraries(OpenSCAD PRIVATE EGL::EGL)")
+                    ;; Use the system sanitizers-cmake module.
+                    (("\\$\\{CMAKE_SOURCE_DIR\\}/submodules/sanitizers-cmake/cmake")
+                     (string-append (assoc-ref inputs "sanitizers-cmake")
+                                    "/share/sanitizers-cmake/cmake")))))))))
+      (inputs (modify-inputs (package-inputs openscad)
+                (append curl libfive)))
+      (synopsis "Script-based 3D modeling app with Python support")
+      (description
+       "PythonSCAD is a programmatic 3D modeling application.  It allows you
 to turn simple code into 3D models suitable for 3D printing.  It is a fork of
 OpenSCAD which not only adds support for using Python as a native language,
 but also adds new features and improves existing ones.")
-    (home-page "https://pythonscad.org/")
-    (license license:gpl2+)))
+      (home-page "https://pythonscad.org/")
+      (license license:gpl2+))))

 (define-public emacs-scad-mode
  (package
@@ -3249,7 +3291,7 @@ dynamics is used by FreeCAD 1.0.0 for its new Assembly workbench.")
           qtx11extras
           qtxmlpatterns-5
           sqlite
-           onetbb                       ;same version as opencascade-occt
+           tbb-2020                     ; Same version as opencascade-occt
           vtk
           xerces-c
           yaml-cpp
@@ -5135,9 +5177,6 @@ more.")
 server for Python and pypy3.")
    (license license:lgpl3+)))

-;; NOTE: modglue is frozen, receiving zero development since 2017-01-19.
-;; However it is a dependency of cadabra 1.x, and cadabra 1.x is a
-;; soft dependency of TeXmacs.
 (define-public modglue
  (package
    (name "modglue")
@@ -5173,8 +5212,6 @@ multiple co-processes in cadabra.")
    (home-page "https://cadabra.science/")
    (license license:gpl2+)))

-;; NOTE: cadabra is frozen, receiving zero development since 2016-12-20.
-;; However it is a soft dependency of TeXmacs (as a plugin).
 (define-public cadabra
  (package
    (name "cadabra")
@@ -75,7 +75,6 @@
  #:use-module (gnu packages documentation)
  #:use-module (gnu packages docbook)
  #:use-module (gnu packages elf)
-  #:use-module (gnu packages file)
  #:use-module (gnu packages flex)
  #:use-module (gnu packages freedesktop)
  #:use-module (gnu packages gawk)
@@ -119,7 +118,6 @@
  #:use-module (gnu packages qt)
  #:use-module (gnu packages readline)
  #:use-module (gnu packages rsync)
-  #:use-module (gnu packages serialization)
  #:use-module (gnu packages sssd)
  #:use-module (gnu packages sqlite)
  #:use-module (gnu packages textutils)
@@ -129,7 +127,6 @@
  #:use-module (gnu packages version-control)
  #:use-module (gnu packages vim)
  #:use-module (gnu packages web)
-  #:use-module (gnu packages xiph)
  #:use-module (gnu packages xml))

 (define-public autofs
@@ -722,34 +719,34 @@ from a mounted file system.")
    (home-page "http://www.gphoto.org/proj/gphotofs/")
    (license license:gpl2+)))

-(define (bcachefs-tools-rust-target)
+(define bcachefs-tools-rust-target
  (platform-rust-target (lookup-platform-by-target-or-system
                         (or (%current-target-system)
                             (%current-system)))))

-(define (bcachefs-tools-target/release)
-  (string-append "target/" (bcachefs-tools-rust-target) "/release"))
+(define bcachefs-tools-target/release
+  (string-append "target/" bcachefs-tools-rust-target "/release"))

-(define (bcachefs-tools-cargo-args)
+(define bcachefs-tools-cargo-args
  ;; Distinct from -MAKE-FLAGS for use with ‘cargo test’ in 'check.
  #~(list "--release"
-          (string-append "--target=" #$(bcachefs-tools-rust-target))))
+          (string-append "--target=" #$bcachefs-tools-rust-target)))

 ;; XXX We want to share common make flags across different packages & phases,
 ;; but the cargo-build-system doesn't allow #:make-flags.
-(define (bcachefs-tools-make-flags)
+(define bcachefs-tools-make-flags
  ;; These result of these flags should be as minimal as possible.
  ;; Enable any optional features in the bcachefs-tools package instead.
  #~(list (string-append "CARGO_BUILD_ARGS="
-                         (string-join #$(bcachefs-tools-cargo-args) " "))
+                         (string-join #$bcachefs-tools-cargo-args " "))
          (string-append "CC=" #$(cc-for-target))
          (string-append "PKG_CONFIG=" #$(pkg-config-for-target))))

-(define (bcachefs-tools-make-install-flags)
+(define bcachefs-tools-make-install-flags
  #~(cons* (string-append "PREFIX=" #$output)
           "INITRAMFS_DIR=$(PREFIX)/share/initramfs-tools"
           "PKGCONFIG_UDEVRULESDIR=$(PREFIX)/lib/udev/rules.d"
-           #$(bcachefs-tools-make-flags)))
+           #$bcachefs-tools-make-flags))

 (define bcachefs-tools-minimal
  ;; This ‘minimal’ package is not *that* minimal, and not different enough to
@@ -785,7 +782,7 @@ from a mounted file system.")
                              (number->string (parallel-job-count))
                              "1")
                     (string-append "VERSION=" #$version)
-                     #$(bcachefs-tools-make-flags))))
+                     #$bcachefs-tools-make-flags)))
          (add-before 'install 'patch-install
            ;; ‘make install’ hard-codes target/release/bcachefs, which is
            ;; incorrect when passing --target, as required to cross-compile or
@@ -793,11 +790,11 @@ from a mounted file system.")
            (lambda _
              (substitute* "Makefile"
                (("target/release")
-                 #$(bcachefs-tools-target/release)))))
+                 #$bcachefs-tools-target/release))))
          (replace 'install
            (lambda _
              (apply invoke "make" "install"
-                     #$(bcachefs-tools-make-install-flags)))))))
+                     #$bcachefs-tools-make-install-flags))))))
    (native-inputs
     (list pkg-config))
    (inputs
@@ -854,7 +851,7 @@ performance and other characteristics.")
                (define bcachefs
                  (or (false-if-exception (search-input-file native-inputs
                                                             "sbin/bcachefs"))
-                      (string-append #$(bcachefs-tools-target/release)
+                      (string-append #$bcachefs-tools-target/release
                                     "/bcachefs")))

                (define (output-completions shell file)
@@ -908,16 +905,16 @@ performance and other characteristics.")
                                "1")
                       (string-append "VERSION="
                                      #$(package-version this-package))
-                       #$(bcachefs-tools-make-flags))))
+                       #$bcachefs-tools-make-flags)))
            (replace 'check
              (lambda* (#:key tests? #:allow-other-keys)
                (when tests?
-                  (apply invoke "cargo" "test" #$(bcachefs-tools-cargo-args)))))
+                  (apply invoke "cargo" "test" #$bcachefs-tools-cargo-args))))
            (replace 'install
              (lambda _
                (apply invoke "make" "install"
                       (string-append "PREFIX=" #$output)
-                       #$(bcachefs-tools-make-install-flags))))))))
+                       #$bcachefs-tools-make-install-flags)))))))
    (inputs (modify-inputs (package-inputs bcachefs-tools-minimal)
              (prepend `(,eudev "static")
                       `(,keyutils "static")
@@ -1197,7 +1194,7 @@ files mistakenly overwritten or destroyed just a few seconds ago.")
 (define-public disorderfs
  (package
    (name "disorderfs")
-    (version "0.6.2")
+    (version "0.6.0")
    (source
     (origin
       (method git-fetch)
@@ -1207,12 +1204,12 @@ files mistakenly overwritten or destroyed just a few seconds ago.")
       (file-name (git-file-name name version))
       (sha256
        (base32
-         "03bz03y7dx5hqv1c1vl7l1axzjr86cd2cddl1qkyqf8vsrn4ds6m"))))
+         "14x57qnqifx6hal1yb2bnrda9l12z19vhqlq850qax23z362q53q"))))
    (build-system gnu-build-system)
    (native-inputs
     (list pkg-config))
    (inputs
-     (list fuse-3.18 attr))
+     (list fuse-2 attr))
    (arguments
     `(#:phases (modify-phases %standard-phases
                  (delete 'configure))  ; no configure script
@@ -2407,7 +2404,7 @@ spend on disk between being written and being deduplicated.")
 (define-public dwarfs
  (package
    (name "dwarfs")
-    (version "0.14.1")
+    (version "0.6.2")
    (source (origin
              (method url-fetch)
              ;; The release archive is needed so that version.h is included.
@@ -2415,44 +2412,30 @@ spend on disk between being written and being deduplicated.")
                                  version "/dwarfs-" version ".tar.xz"))
              (sha256
               (base32
-                "1i990m6radrzdc1ccy9j7kr4vgy30h3sfljmq27myahl5rzz4332"))
+                "1kncxf85gsj3anck8ccjmxn2azp5ifqbgkiky2kharmvphkbmfcv"))
              (snippet
               #~(begin
                   (use-modules (guix build utils))
                   ;; Prefer system libraries instead of submodules.
-                   ;; TODO: Package fbthrift. (only source is needed)
-                   ;; TODO: Package fsst.
-                   ;; TODO: Package ricepp.
-                   ;; NOTE: Packaging folly seperately and unbundling isn't
-                   ;; necessary since a fork is used.
+                   ;; TODO: Package fbthrift.
+                   ;; TODO: Can we use Guix own folly?  There is no CMake option for it.
+                   ;; TODO: Package parallel-hashmap.
                   (for-each delete-file-recursively
                             '(;; "fbthrift"
-                               ;; "ricepp"
-                               ;; "fsst"
-                               "fast_float"))))))
+                               ;; "folly"
+                               ;; "parallel-hashmap"
+                               "xxHash"
+                               "zstd"))))))
    (build-system cmake-build-system)
    (arguments
-     (list
-      #:tests? #f
-      #:configure-flags
-      #~(list "-DPREFER_SYSTEM_FAST_FLOAT=ON"
-              "-DPREFER_SYSTEM_GTEST=ON"
-              "-DWITH_TESTS=OFF"
-              ;; Disable man pages since ronn fails to run without hpricot.
-              "-DWITH_MAN_PAGES=OFF")
-      #:phases
-      #~(modify-phases %standard-phases
-          ;; these tests require a FUSE device to work, so disable
-          ;; FIXME: this doesn't work so all tests are disabled above.
-          (add-before 'check 'set-test-filter
-            (lambda _
-              (let* ((privileged-tests
-                      '("dwarfs/tools_test.end_to_end/*"
-                        "dwarfs/tools_test.mutating_and_error_ops/*"
-                        "dwarfs/tools_test.categorize/*"))
-                     (filter (string-append "-" ;"-" disables all following tests
-                                            (string-join privileged-tests ":"))))
-                (setenv "GTEST_FILTER" filter)))))))
+     '(#:tests? #f ; TODO: 1 test fails because 'modprobe fuse' needs privileged access.
+       #:configure-flags
+       (list "-DPREFER_SYSTEM_ZSTD=ON"
+             "-DPREFER_SYSTEM_XXHASH=ON"
+             "-DPREFER_SYSTEM_GTEST=ON"
+             "-DWITH_TESTS=ON"
+             ;; Disable man pages since ronn fails to run without hpricot.
+             "-DWITH_MAN_PAGES=OFF")))
    (native-inputs
     (list
      ;; FIXME: Building with ronn fails because hpricot is missing from Guix.
@@ -2461,21 +2444,14 @@ spend on disk between being written and being deduplicated.")
     (list
      boost
      double-conversion
-      fast-float
-      file                              ;for libmagic
-      flac
-      fmt-10
+      fmt
      fuse
      gflags
      jemalloc
      libarchive
      libunwind
      lz4
-      nlohmann-json
      openssl
-      parallel-hashmap
-      range-v3
-      utfcpp
      xxhash
      xz
      `(,zstd "lib")))
@@ -39,7 +39,7 @@
 ;;; Copyright © 2023 Attila Lendvai <attila@lendvai.name>
 ;;; Copyright © 2024 Saku Laesvuori <saku@laesvuori.fi>
 ;;; Copyright © 2024 Sharlatan Hellseher <sharlatanus@gmail.com>
-;;; Copyright © 2025-2026 Hennadii Stepanov <hebasto@gmail.com>
+;;; Copyright © 2025 Hennadii Stepanov <hebasto@gmail.com>
 ;;; Copyright © 2025 James Smith <jsubuntuxp@disroot.org>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -158,7 +158,7 @@
  ;; <https://bitcoincore.org/en/lifecycle/#schedule>.
  (package
    (name "bitcoin-core")
-    (version "30.2")
+    (version "30.0")
    (source (origin
              (method url-fetch)
              (uri
@@ -166,16 +166,14 @@
                              version "/bitcoin-" version ".tar.gz"))
              (sha256
               (base32
-                "1jw4djh22v0nih0n7irdbknfbqavlc4l3b8176b5qgc88a60pl3g"))))
+                "0x39bqd9ql7b6s7sj8ws8gw6g4nbgf6cplnys2lrmvfza56jliwv"))))
    (build-system qt-build-system)
    (arguments
-     (list #:qtbase qtbase
-           #:configure-flags
+     (list #:configure-flags
           #~(list
              "-DBUILD_GUI=ON"
              "-DBUILD_BENCH=ON"
              "-DWITH_ZMQ=ON")
-           #:qtbase qtbase
           #:phases
           #~(modify-phases %standard-phases
               (add-before 'build 'set-no-git-flag
@@ -201,7 +199,7 @@
           capnproto
           libevent
           qrencode
-           qtwayland
+           qtbase
           sqlite
           zeromq))
    (home-page "https://bitcoincore.org/")
@@ -762,37 +760,36 @@ other machines/servers.  Electrum does not download the Bitcoin blockchain.")
       (file-name (git-file-name name version))
       (sha256
        (base32 "11xhlssr7bvdv3p256k87y35vjzyfd93p72w8f2xy7j5jh6abhp1"))))
-    (build-system pyproject-build-system)
+    (build-system python-build-system)
    (arguments
     (list
      #:tests? #f                       ; no tests
-      #:imported-modules `(,@%pyproject-build-system-modules
-                           (guix build qt-utils))
-      #:modules '((guix build pyproject-build-system)
+      #:modules '((guix build python-build-system)
                  (guix build qt-utils)
                  (guix build utils))
+      #:imported-modules `(,@%python-build-system-modules
+                           (guix build qt-utils))
      #:phases
-      (with-extensions (list (pyproject-guile-json))
-        #~(modify-phases %standard-phases
-            (add-after 'unpack 'create-output-directories
-              (lambda _
-                ;; setup.py installs to ~/.local/share if this doesn't exist.
-                (mkdir-p (string-append #$output "/share"))))
-            (add-after 'unpack 'use-libsecp256k1-input
-              (lambda* (#:key inputs #:allow-other-keys)
-                (substitute* "electroncash/secp256k1.py"
-                  (("libsecp256k1.so.0")
-                   (search-input-file inputs "lib/libsecp256k1.so.0")))))
-            (add-after 'unpack 'relax-requirements
-              (lambda _
-                (substitute* "contrib/requirements/requirements.txt"
-                  (("python-dateutil<2\\.9")
-                   "python-dateutil"))))
-            (add-after 'install 'wrap-qt
-              (lambda* (#:key inputs #:allow-other-keys)
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'create-output-directories
+            (lambda _
+              ;; setup.py installs to ~/.local/share if this doesn't exist.
+              (mkdir-p (string-append #$output "/share"))))
+          (add-after 'unpack 'use-libsecp256k1-input
+            (lambda* (#:key inputs #:allow-other-keys)
+              (substitute* "electroncash/secp256k1.py"
+                (("libsecp256k1.so.0")
+                 (search-input-file inputs "lib/libsecp256k1.so.0")))))
+          (add-after 'unpack 'relax-requirements
+            (lambda _
+              (substitute* "contrib/requirements/requirements.txt"
+                (("python-dateutil<2\\.9")
+                 "python-dateutil"))))
+          (add-after 'install 'wrap-qt
+            (lambda* (#:key outputs inputs #:allow-other-keys)
+              (let ((out (assoc-ref outputs "out")))
                (wrap-qt-program "electron-cash"
-                                 #:output #$output #:inputs inputs)))))))
-    (native-inputs (list python-setuptools))
+                                 #:output out #:inputs inputs)))))))
    (inputs
     (list bash-minimal
           libevent
@@ -835,7 +832,7 @@ blockchain.")
  ;; the system's dynamically linked library.
  (package
    (name "monero")
-    (version "0.18.4.5")
+    (version "0.18.4.4")
    (source
     (origin
       (method git-fetch)
@@ -853,7 +850,7 @@ blockchain.")
            delete-file-recursively
            '("external/miniupnp" "external/rapidjson"))))
       (sha256
-        (base32 "1lf3rss9y34g51hxqny8vcp8hayv0r3lsndxl85gciqxgb0ls7dz"))))
+        (base32 "0f5b8yvrfhxc86ws3nfz0v6prl9n2nq9hvwlc2wcgspp8lbl26j8"))))
    (build-system cmake-build-system)
    (native-inputs
     (list doxygen
@@ -940,7 +937,7 @@ the Monero command line client and daemon.")
 (define-public monero-gui
  (package
    (name "monero-gui")
-    (version "0.18.4.5")
+    (version "0.18.4.4")
    (source
     (origin
       (method git-fetch)
@@ -956,7 +953,7 @@ the Monero command line client and daemon.")
           ;; See the 'extract-monero-sources' phase.
           (delete-file-recursively "monero")))
       (sha256
-        (base32 "02qlm0caqscq5ms4gd3ckipsq90gvhjprqdcnpcxwdp3fa16749i"))))
+        (base32 "0bvd3mv0ahkfx2k2n6z5n7mnksd75h859ji32a4d74vaizc04igm"))))
    (build-system qt-build-system)
    (native-inputs
     `(,@(package-native-inputs monero)
@@ -1152,10 +1149,11 @@ Ledger Nano as a hardware SSH/GPG agent.")
       (file-name (git-file-name name version))
       (sha256
        (base32 "1mblx4favmw4nf7k9rfl00ivv77kgdiwghyz4xv5cp0v410kjaqc"))))
-    (build-system pyproject-build-system)
-    (arguments (list #:tests? #f))      ; No test suite.
-    (native-inputs (list python-setuptools))
-    (inputs (list (list python "tk")))
+    (build-system python-build-system)
+    (arguments
+     `(#:tests? #f))        ; No test suite.
+    (inputs
+     `(("python-tkinter" ,python "tk")))
    (home-page "https://github.com/rendaw/trezor-gpg-pinentry-tk")
    (synopsis "GPG pinentry program for use with @code{trezor-agent}")
    (description
@@ -1338,22 +1336,23 @@ TREZOR Hardware Wallet.")
 (define-public python-keepkey
  (package
    (name "python-keepkey")
-    (version "7.2.1")
+    (version "6.0.3")
    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/keepkey/python-keepkey")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "00hqppdj3s9y25x4ad59y8axq94dd4chhw9zixq32sdrd9v8z55a"))))
-    (build-system pyproject-build-system)
+      (origin
+        (method url-fetch)
+        (uri (pypi-uri "keepkey" version))
+        (sha256
+          (base32
+            "0z3d0m6364v9dv0njs4cd5m5ai6j6v35xaaxfxl90m9vmyxy81vd"))))
+    (build-system python-build-system)
    (arguments
-     (list
-      #:test-backend #~'custom
-      #:test-flags #~(find-files "tests/unit" "\\.py$")))
-    (native-inputs (list python-setuptools))
+     `(#:phases
+       (modify-phases %standard-phases
+         (delete 'check)
+         (add-after 'install 'check
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (add-installed-pythonpath inputs outputs)
+             (apply invoke "python" (find-files "tests/unit" "\\.py$")))))))
    (propagated-inputs
     (list python-ecdsa python-hidapi python-libusb1 python-mnemonic
           python-protobuf))
@@ -1585,7 +1584,7 @@ Luhn and family of ISO/IEC 7064 check digit algorithms.")
        (base32 "16d0q1yzrh9fn6ybbsvhr9wbgld27rvn152w4wdcibidq2jbi0s2"))))
    (build-system pyproject-build-system)
    (native-inputs (list python-hatchling python-hatch-vcs python-pytest
-                         python-pydantic))
+                         python-pydantic-2))
    (propagated-inputs (list python-importlib-resources python-pycountry
                             python-rstr python-typing-extensions))
    (home-page "http://github.com/mdomke/schwifty/")
@@ -2018,19 +2017,95 @@ This includes components like The Hub and Indexer which and various others
 that allows you to run services and through them access the Bitcoin Cash networks.")
    (license license:gpl3+)))

+
 (define-public beancount
  (package
    (name "beancount")
-    (version "3.2.0")
+    (version "2.3.6")
    (source
     (origin
-       (method git-fetch)
+       (method git-fetch) ; no test data files in PyPI archive
       (uri (git-reference
             (url "https://github.com/beancount/beancount")
             (commit version)))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "0830wx1brzq74kf3m4dzc015n4922qmvvw9n89fkcbc3d5swi8n4"))))
+        (base32 "1slxsjw29cyr2kbirdpijhpqspk55k38rpmk3zc02pr1wll62qsv"))
+       (patches (search-patches "beancount-disable-googleapis-fonts.patch"))
+       (modules '((guix build utils)))
+       (snippet
+        #~(begin
+            ;; Remove broken experiments.
+            (delete-file-recursively "experiments")
+            ;; Remove bundled packages.
+            (delete-file-recursively "third_party")))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:test-flags
+      #~(list
+         ;; These tests require network.
+         "--ignore=beancount/web/web_test.py"
+         "-k" (string-join
+               (list "not test_parse_stdin" ; ModuleNotFoundError: 'pytest'
+                     "test_setup" ; AssertionError: 5 not greater than 20
+                     ;; Require network
+                     "test_bake_archive__known"
+                     "test_bake_directory")
+               " and not "))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'relax-requirements
+            (lambda _
+              (substitute* "setup.py"
+                ;; Use compatible fork, and do not fail during sanity check.
+                (("\"pdfminer2\",") ""))))
+          (add-before 'check 'build-extensions
+            (lambda _
+              (invoke "python" "setup.py" "build_ext" "--inplace"))))))
+    (native-inputs
+     (list gnupg
+           python-pdfminer-six
+           python-pytest
+           python-setuptools
+           python-wheel))
+    (propagated-inputs
+     (list python-beautifulsoup4
+           python-bottle
+           python-chardet
+           python-dateutil
+           python-google-api-client
+           python-google-auth-oauthlib
+           python-lxml
+           python-magic
+           python-oauth2client
+           python-ply
+           python-requests))
+    (home-page "https://beancount.github.io/")
+    (synopsis "Command-line double-entry accounting tool")
+    (description
+     "Beancount is a double-entry bookkeeping computer language that lets you
+define financial transaction records in a text file, read them in memory,
+generate a variety of reports from them, and provides a web interface.")
+    (license license:gpl2)))
+
+(define-public beancount-3
+  (package
+    (name "beancount")
+    (version "3.1.0")
+    (source
+     (origin
+       (method git-fetch) ; Pypi archive doesn't contain the test suite.
+       (uri (git-reference
+             (url "https://github.com/beancount/beancount")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0pzbhlsvch4n48rqkbff1v1rbk3gm05w0fbd2p97vdmrmlxaa33d"))
+       (modules '((guix build utils)))
+       (snippet #~(substitute* "pyproject.toml"
+                    (("regex >=2022.9.13")
+                     "regex >=2022.1.18")))))
    (arguments
     (list
      #:test-flags
@@ -2063,8 +2138,6 @@ define financial transaction records in a text file, read them in memory,
 generate a variety of reports from them, and provides a web interface.")
    (license license:gpl2)))

-(define-deprecated/public-alias beancount-3 beancount)
-
 (define-public beanquery
  (package
    (name "beanquery")
@@ -2080,13 +2153,8 @@ generate a variety of reports from them, and provides a web interface.")
                    (("tatsu-lts")
                     "tatsu")))))
    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-flags
-      ;; Whitespace differences in these tests.
-      #~(list "--ignore=beanquery/query_render_test.py")))
    (propagated-inputs
-     (list beancount
+     (list beancount-3
           python-click
           python-dateutil
           python-tatsu))
@@ -2114,7 +2182,7 @@ it can easily generate custom reports specific to accounting purposes.")
        (base32 "0zlanw88dq7czgsdvqwz2fgxamyrfnx15ymv4d7fnjrj04glpg47"))))
    (build-system pyproject-build-system)
    (propagated-inputs
-     (list beancount
+     (list beancount-3
           python-beautifulsoup4
           python-chardet
           python-petl
@@ -2148,7 +2216,7 @@ from account statements and other documents and for managing documents.")
                     ;; <https://github.com/beancount/fava/issues/2153>).
                     #~(list "-k" "not options-/long-example/api/options")))
    (propagated-inputs
-     (list beancount
+     (list beancount-3
           beanquery
           python-babel
           python-beangulp
@@ -2174,30 +2242,35 @@ software Beancount with a focus on features and usability.")
    (license license:expat)))

 (define-public emacs-beancount
-  (let ((commit "8a564f5a26e6245860188ebf71db0262dd78e068")
-        (revision "0"))
-    (package
-      (name "emacs-beancount")
-      (version (git-version "0.9.0" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url "https://github.com/beancount/beancount-mode")
-                (commit commit)))
-         (sha256
-          (base32 "0affr04pa9gi9ddv1jqf7nwnpira7wdlm8aa293xqlzlb93bgfv2"))
-         (file-name (git-file-name name version))))
-      (build-system emacs-build-system)
-      (arguments
-       (list #:test-command #~(list "make" "test")))
-      (native-inputs
-       (list beancount))
-      (home-page "https://github.com/beancount/beancount-mode")
-      (synopsis "Emacs mode for Beancount")
-      (description
-       "Emacs-beancount is an Emacs mode for the Beancount accounting tool.")
-      (license license:gpl3+))))
+  (package
+    (name "emacs-beancount")
+    (version "0.9.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/beancount/beancount-mode")
+             (commit version)))
+       (sha256
+        (base32
+         "01ivxgv1g0pkr0xi43366pghc3j3mmhk5bshis6kkn04bq04cx7f"))
+       (file-name (git-file-name name version))))
+    (build-system emacs-build-system)
+    (arguments
+     (list #:test-command #~(list "make" "test")
+           #:phases
+           #~(modify-phases %standard-phases
+               (add-after 'unpack 'adjust-available-beancount-options
+                 (lambda _
+                   (substitute* "beancount.el"
+                     (("\"account_unrealized_gains\"") "")))))))
+    (native-inputs
+     (list beancount))
+    (home-page "https://github.com/beancount/beancount-mode")
+    (synopsis "Emacs mode for Beancount")
+    (description
+     "Emacs-beancount is an Emacs mode for the Beancount accounting tool.")
+    (license license:gpl3+)))

 (define-public hledger-web
  (package
@@ -2390,23 +2463,29 @@ analysis of financial market data.")
 (define-public python-mt-940
  (package
    (name "python-mt-940")
-    (version "4.30.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/WoLpH/mt940.git")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "13g5338aa8vgkx8g94vz5d8ynfq3jndvyh1nz6dlhw4axwr4x8dp"))))
+    (version "4.23.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/WoLpH/mt940.git")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "0z9w1qalcphsck3j6vkrs7k47ah9zq2rv0lm9nmcsgwpyp59qkyf"))))
    (properties '(("upstream-name" #{.}# "mt-940")))
-    (build-system pyproject-build-system)
+    (build-system python-build-system)
    (arguments
-     (list
-      #:test-flags
-      #~(list "-c" "/dev/null")))       ; Remove custom --cov flags.
-    (native-inputs (list python-pytest python-pyyaml python-setuptools))
+     `(#:phases (modify-phases %standard-phases
+                  (replace 'check
+                    (lambda* (#:key tests? inputs outputs #:allow-other-keys)
+                      (when tests?
+                        ;; Remove custom --cov flags.
+                        (delete-file "pytest.ini")
+                        (invoke "pytest" "-vv")))))))
+    (native-inputs (list python-flake8
+                         python-pytest
+                         python-pyyaml))
    (home-page "https://mt940.readthedocs.io/")
    (synopsis "Python parser for MT940-encoded SWIFT data")
    (description
@@ -1623,13 +1623,13 @@ corresponding layout." layout))
 (define-public qmk
  (package
    (name "qmk")
-    (version "1.2.0")
+    (version "1.1.6")
    (source (origin
              (method url-fetch)
              (uri (pypi-uri "qmk" version))
              (sha256
               (base32
-                "0j4ana65v5x1rg262a9nvwnr8hc1zay1gw74brv2n6s09ind2jqn"))))
+                "0l4b5bi6x1i9bh3ik73yisn1pq1bhgiksiddvg3cxy7jmgdnqhyw"))))
    (build-system pyproject-build-system)
    (arguments
     (list
@@ -51,7 +51,7 @@
 ;;; Copyright © 2021 Liliana Marie Prikler <liliana.prikler@gmail.com>
 ;;; Copyright © 2022 Jose G Perez Taveras <josegpt27@gmail.com>
 ;;; Copyright © 2022 Hilton Chain <hako@ultrarare.space>
-;;; Copyright © 2022, 2026 Nguyễn Gia Phong <cnx@loang.net>
+;;; Copyright © 2022 Nguyễn Gia Phong <cnx@loang.net>
 ;;; Copyright © 2023 Nicolas Graves <ngraves@ngraves.fr>
 ;;; Copyright © 2023 Ahmad Draidi <a.r.draidi@redscript.org>
 ;;; Copyright © 2023 Arnaud Lechevallier <arnaud.lechevallier@free.fr>
@@ -767,25 +767,6 @@ font is provided in the OpenType font (OTF) format.")
    (properties '((upstream-name . "freefont")
                  (ftp-directory . "/gnu/freefont")))))

-(define-public font-great-vibes
-  (package
-    (name "font-great-vibes")
-    (version "1.103")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/googlefonts/great-vibes/")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32 "1bxjr41spgf0l1w2fhs6743gvp0id2hv0vsivqcflb8f631rkkq1"))))
-    (build-system font-build-system)
-    (home-page "https://fonts.google.com/specimen/Great+Vibes")
-    (synopsis "Flowing script font")
-    (description "Great Vibes is a flowing script font with casual uppercase
-letters and more formal lowercase letters.")
-    (license license:silofl1.1)))
-
 (define-public font-liberation
  (package
    (name "font-liberation")
@@ -926,26 +907,6 @@ The unified Libertinus family consists of:
 expansion of Franklin Gothic, a classic font.  It covers 105 Latin Languages.")
      (license license:silofl1.1))))

-(define-public font-playwrite
-  (package
-    (name "font-playwrite")
-    (version "1.003")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/TypeTogether/Playwrite/")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32 "1vjll0jdmy5liw68k1p0pry5hzjjxna9a2sccifvwckwxngg84zc"))))
-    (build-system font-build-system)
-    (home-page "https://github.com/TypeTogether/Playwrite/")
-    (synopsis "Family of primary school cursive fonts")
-    (description "Playwrite is a typeface engine for the creation of primary
-school cursive fonts.  It sports several variations of lowercase and uppercase
-letters to account for regional differences.")
-    (license license:silofl1.1)))
-
 (define-public font-terminus
  (package
    (name "font-terminus")
@@ -1591,7 +1552,7 @@ noncharacters are also represented.")
 (define-public font-google-noto
  (package
    (name "font-google-noto")
-    (version "2026.01.01")
+    (version "2025.07.01")
    (source
     (origin
       (method git-fetch)
@@ -1600,7 +1561,7 @@ noncharacters are also represented.")
             (commit (string-append "noto-monthly-release-" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "1rrwxr7g1gwbp0gb2kjxi0s42hijhs82fc4dbqa6spkj4d9c9qq9"))))
+        (base32 "0p27wbxdwi99r5yj33z9jadlv4rbhp5vw5c0ir15bymvdwdr8s8z"))))
    (build-system font-build-system)
    (arguments
     (list
@@ -3097,36 +3058,6 @@ most CJK characters are the same height, and double the width as ASCII
 characters.")
    (properties '((upstream-name . "Sarasa")))))

-(define-public font-sligoil
-  ;; No tagged release, see <https://gitlab.com/velvetyne/sligoil/-/issues/1>.
-  (let ((commit "70ae7cdd6bc0862094f2d9859cf98f71eb6209e5")
-        (revision "0"))
-    (package
-      (name "font-sligoil")
-      (version (git-version "2.0" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-               (url "https://gitlab.com/velvetyne/sligoil")
-               (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "18mfxk59h115fd13mpwcpnmsm4w9pshdwm8n47aszk2jsrnvxg99"))))
-      (build-system font-build-system)
-      (home-page "https://velvetyne.fr/fonts/sligoil")
-      (synopsis "Monospace typeface influenced by British isles' culture")
-      (description
-       "Sligoil is a monospace typeface.  It has been influenced
-by the culture of the British isles (the work of Matthew Carter
-and signs on Irish whiskey distilleries) and also by the letters
-on vintage Space Cadet keyboards produced by MIT.
-
-The Sligoil typeface presents wide language support for Latin-based
-European languages and Vietnamese, and a collection of symbols
-and alternate forms (including upright italic letters).")
-      (license license:silofl1.1))))
-
 (define-public font-space-grotesk
  (package
    (name "font-space-grotesk")
@@ -4664,7 +4595,7 @@ Mainland China.")
 (define-public font-chiron-sung-hk
  (package
    (name "font-chiron-sung-hk")
-    (version "1.022")
+    (version "1.017")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -4673,7 +4604,7 @@ Mainland China.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "1bndyr8bi9ngrba3c3n9k9k26s0irk62jhly7fj6g62k87b82z75"))))
+                "1pg0zh4gajn699am26j4ldpsa51bafn7n0jc5s4v6sslixj3ccwg"))))
    (build-system font-build-system)
    (arguments
     (list #:phases
@@ -4681,12 +4612,12 @@ Mainland China.")
               (replace 'install
                 (lambda _
                   (let ((install (assoc-ref %standard-phases 'install)))
-                     (with-directory-excursion "VAR_OTF"
+                     (with-directory-excursion "VAR"
                       (for-each delete-file (find-files "." "\\.ttf$"))
                       (install #:outputs `(("out" . ,#$output))))
-                     (with-directory-excursion "STATIC_OTF"
+                     (with-directory-excursion "OTF"
                       (install #:outputs `(("out" . ,#$output:otf))))
-                     (with-directory-excursion "STATIC_TTF"
+                     (with-directory-excursion "TTF"
                       (install #:outputs `(("out" . ,#$output:ttf))))))))))
    (outputs '("out" "otf" "ttf"))
    (home-page "https://chiron-fonts.github.io/")
@@ -4702,7 +4633,7 @@ prevalent typefaces in Traditional Chinese regions.")
  (package
    (inherit font-chiron-sung-hk)
    (name "font-chiron-hei-hk")
-    (version "2.605")
+    (version "2.524")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -4711,7 +4642,7 @@ prevalent typefaces in Traditional Chinese regions.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "1g06vcrav4bd57ka4b6wrjas04rnhb35n7c7447lv2yp26z10ypp"))))
+                "077f50yjcf5slr2jzrdampwcrlaswvdnin5iwnirzsms3x9vsm69"))))
    (synopsis "Traditional Chinese Gothic typeface")
    (description
     "Chiron Hei HK is a Traditional Chinese Gothic typeface based on the Hong
@@ -8,7 +8,7 @@
 ;;; Copyright © 2017 Nikita <nikita@n0.is>
 ;;; Copyright © 2017, 2018, 2020–2022 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018, 2024 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2018-2021, 2023, 2026 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2018, 2019, 2020, 2021, 2023 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2019, 2020, 2022 Marius Bakke <marius@gnu.org>
 ;;; Copyright © 2020 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2020, 2021, 2024 Nicolas Goaziou <mail@nicolasgoaziou.fr>
@@ -1316,38 +1316,32 @@ TTF (TrueType/OpenType Font) files.")
                "1l718n4k4widx49xz7qrj4mybzb8q67kp2jw7f47604ips4654mf"))
              (modules '((guix build utils)))
              (snippet
-               #~(begin
-                   ;; Include <unistd.h> for the 'getopt' declaration.
-                   (substitute* "t1asm.c"
-                     (("#include <stdio.h>" all)
-                      (string-append all "\n"
-                                     "#include <unistd.h>\n")))
-
-                   ;; Remove trailing backslashes in the sed expression of the
-                   ;; 'install' rule since sed would otherwise fail.
-                   (substitute* "Makefile"
-                     (("\\|;\\\\[[:space:]]*$") "|; "))
-                   #t))))
+               '(begin
+                  ;; Remove trailing backslashes in the sed expression of the
+                  ;; 'install' rule since sed would otherwise fail.
+                  (substitute* "Makefile"
+                    (("\\|;\\\\[[:space:]]*$") "|; "))
+                  #t))))
    (build-system gnu-build-system)
    (arguments
-     (list #:tests? #f ;no tests
-           #:phases
-           #~(modify-phases %standard-phases
-               (replace 'configure
-                 (lambda* (#:key outputs #:allow-other-keys)
-                   (let ((out (assoc-ref outputs "out")))
-                     (substitute* "Makefile"
-                       (("INSTDIR =.*")
-                        (string-append "INSTDIR = " out "\n"))
-                       (("OWNER = .*")
-                        "OWNER = `id -un`\n")
-                       (("GROUP = .*")
-                        "GROUP = `id -g`\n")) #t)))
-               (replace 'build
-                 (lambda _
-                   (invoke "make" "-j"
-                           (number->string (parallel-job-count))
-                           "all" "CC=gcc"))))))
+     '(#:tests? #f                                ;no tests
+       #:phases (modify-phases %standard-phases
+                  (replace 'configure
+                    (lambda* (#:key outputs #:allow-other-keys)
+                      (let ((out (assoc-ref outputs "out")))
+                        (substitute* "Makefile"
+                          (("INSTDIR =.*")
+                           (string-append "INSTDIR = " out "\n"))
+                          (("OWNER = .*")
+                           "OWNER = `id -un`\n")
+                          (("GROUP = .*")
+                           "GROUP = `id -g`\n"))
+                        #t)))
+                  (replace 'build
+                    (lambda _
+                      (invoke "make" "-j"
+                              (number->string (parallel-job-count))
+                              "all" "CC=gcc"))))))
    (inputs (list perl))
    (synopsis "Convert TrueType fonts to Postscript Type 1")
    (description
@@ -2212,12 +2206,11 @@ work well with other GTK desktop environments.")
       ("gettext" ,gettext-minimal)))
    (inputs
     `(("cairo" ,cairo)
-       ("bash-minimal" ,bash-minimal)
+       ("bash-minimal", bash-minimal)
       ("fontconfig" ,fontconfig)
       ("freetype" ,freetype)
       ("glib" ,glib)
       ("pango" ,pango)
-       ("perl" ,perl)                   ;needed for pdfoutline
       ("perl-pdf-api2" ,perl-pdf-api2)
       ("perl-libintl-perl" ,perl-libintl-perl)
       ("unicode-blocks"
@@ -2234,10 +2227,7 @@ work well with other GTK desktop environments.")
    (synopsis "PDF and PostScript font samples generator")
    (description "This package provides a tool that can be used to make font
 samples that show coverage of the font and are similar in appearance to
-Unicode Charts.  It was developed for use with DejaVu Fonts project.
-
-This package also includes the @command{pdfoutline} script, which can be used
-to modify outlines (machine-readable tables of contents) in PDF files.")
+Unicode Charts.  It was developed for use with DejaVu Fonts project.")
    (license license:gpl3+)))

 (define-public libraqm
@@ -42,7 +42,6 @@
 ;;; Copyright © 2024, 2025 dan <i@dan.games>
 ;;; Copyright © 2024 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2025 wvlab <me@wvlab.xyz>
-;;; Copyright © 2025 jgart <jgart@dismail.de>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -329,45 +328,6 @@ some of the freedesktop.org specifications.")
 will pick hardware planes for these layers if possible.")
    (license license:expat)))

-(define-public lisgd
-  (package
-    (name "lisgd")
-    (version "0.4.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://git.sr.ht/~mil/lisgd")
-              (commit version)))
-       (sha256
-        (base32
-         "0rkm6d3jn0i1fwf5qj47hv8w9aax5fijhccnc6f6v59q3aj5jd4n"))
-       (file-name (git-file-name name version))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:tests? #f ; There are no tests.
-      #:make-flags
-      #~(list
-         (string-append "CC=" #$(cc-for-target))
-         (string-append "PREFIX=" %output)
-         (string-append "CPPFLAGS="
-                        "-DWITH_WAYLAND "
-                        "-I" #$libinput "/include "
-                        "-I" #$wayland "/include")
-         (string-append "LDFLAGS="
-                        "-L" #$libinput "/lib "
-                        "-L" #$wayland "/lib"))
-      #:phases
-      #~(modify-phases %standard-phases
-          (delete 'configure)))) ; There is no configure script.
-    (inputs (list libinput libx11 wayland))
-    (home-page "https://git.sr.ht/~mil/lisgd")
-    (synopsis "Bind gestures via libinput touch events")
-    (description "Bind gestures on touchscreens and unsupported gesture
-devices via libinput touch events.")
-    (license (list license:expat license:x11))))
-
 (define-public malcontent
  (package
    (name "malcontent")
@@ -1282,17 +1242,14 @@ devices when in power-saver mode.")
 (define-public python-libevdev
  (package
    (name "python-libevdev")
-    (version "0.13.1")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://gitlab.freedesktop.org/libevdev/python-libevdev")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1976gqf1rlgv68dc99xzaixa8cy4qrxgn11gh5xgw1ryzs0ps9pp"))))
-    (build-system pyproject-build-system)
+    (version "0.11")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "libevdev" version))
+              (sha256
+               (base32
+                "03snix86j0angq0lydp29f8833clxq8h0x4spmh8lj7j9mm01jp9"))))
+    (build-system python-build-system)
    (arguments
     (list
      #:phases
@@ -1301,15 +1258,19 @@ devices when in power-saver mode.")
            (lambda* (#:key inputs #:allow-other-keys)
              (substitute* "libevdev/_clib.py"
                (("libevdev.so.2")
-                 (search-input-file inputs "lib/libevdev.so.2"))))))))
-    (native-inputs (list python-hatchling python-pytest))
+                 (search-input-file inputs "lib/libevdev.so.2")))))
+          (replace 'check
+            (lambda* (#:key tests? #:allow-other-keys)
+              (when tests?
+                (invoke "pytest" "-vv" "test")))))))
+    (native-inputs (list python-pytest))
    (inputs (list libevdev))
    (home-page "https://gitlab.freedesktop.org/libevdev/python-libevdev")
    (synopsis "Python wrapper for libevdev")
-    (description
-     "This package provides a Python wrapper around @code{libevdev}, taking
-advantage of @code{libevdev}'s advanced event handling.  Documentation is
-available at @url{https://python-libevdev.readthedocs.io/en/latest/}.
+    (description "This package provides a Python wrapper around
+@code{libevdev}, taking advantage of @code{libevdev}'s advanced event
+handling.  Documentation is available at
+@url{https://python-libevdev.readthedocs.io/en/latest/}.
@code{libevdev} makes it easy to:
@itemize
@item read and parse events from an input device;
@@ -1,96 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2025 Marcel Steinbeck <msteinbeck@posteo.net>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
-
-(define-module (gnu packages fusion)
-  #:use-module (gnu packages dlang)
-  #:use-module (gnu packages glib)
-  #:use-module (gnu packages icu4c)
-  #:use-module (gnu packages java)
-  #:use-module (gnu packages llvm)
-  #:use-module (gnu packages node)
-  #:use-module (gnu packages perl)
-  #:use-module (gnu packages pkg-config)
-  #:use-module (gnu packages python)
-  #:use-module (gnu packages python-check)
-  #:use-module (guix build-system gnu)
-  #:use-module (guix gexp)
-  #:use-module (guix git-download)
-  #:use-module (guix packages)
-  #:use-module (guix utils)
-  #:use-module ((guix licenses) #:prefix license:))
-
-(define-public fusion
-  (package
-    (name "fusion")
-    (version "3.2.13")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/fusionlanguage/fut")
-              (commit (string-append "fut-" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32
-         "06qn098nbspz3srhb4n3fycsk75f2xala25gpyjryby3f5ijb9md"))))
-    (build-system gnu-build-system)
-    (outputs '("out" "doc"))
-    (arguments
-     (list
-      #:make-flags #~(list (string-append "CC=" #$(cc-for-target))
-                           (string-append "prefix=" #$output))
-      #:test-target "test"
-      #:phases
-      #~(modify-phases %standard-phases
-          (delete 'configure)
-          (add-after 'unpack 'remove-unsupported-tests
-            (lambda _
-              (substitute* "Makefile"
-                ;; The following targets cannot be executed in the Guix build
-                ;; environment:
-                ;;
-                ;;   test-cs - needs `dotnet'
-                ;;   test-ts - tries to download packages
-                ;;   test-swift - needs Swift
-                ;;
-                ;; We therefore remove them from the `test' target.
-                (("^(test:.*)test-cs (.*)test-ts (.*)test-swift (.*)$"
-                  _ prefix a b suffix)
-                 (string-append prefix a b suffix)))))
-          (add-after 'install 'install-doc
-            (lambda _
-              (let ((doc (string-append #$output:doc "/share/doc/fusion/")))
-                (mkdir-p doc)
-                (copy-recursively "doc" doc)))))))
-    (native-inputs
-     (list clang             ;; test-cl
-           dmd               ;; test-d
-           glib              ;; test-c
-           icu4c             ;; test-cpp
-           node              ;; test-js
-           `(,openjdk "jdk") ;; test-java
-           perl              ;; for evaluating test results
-           pkg-config        ;; test-c
-           python            ;; test-py
-           python-mypy))     ;; test-py
-    (home-page "https://fusion-lang.org")
-    (synopsis "The Fusion programming language transpiler (fut)")
-    (description "Fusion is a programming language designed for implementing reusable
-components (libraries) for C, C++, C#, D, Java, JavaScript, Python, Swift,
-TypeScript and OpenCL C, all from single codebase.")
-    (license license:gpl3+)))
@@ -55,7 +55,7 @@
 (define-public gambas
  (package
    (name "gambas")
-    (version "3.21.1")
+    (version "3.21.0")
    (source
     (origin
       (method git-fetch)
@@ -64,7 +64,7 @@
             (commit version)))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "0mscfpm9ldnk8dfg7ripxyqg77j8q3bliwkacqwih37151mrc07s"))))
+        (base32 "0lkm4fbxqmkqpk2f2z660m77xshhmvj4pnlv0z43zrarsij8l6gf"))))
    (build-system gnu-build-system)
    (arguments
     (list
@@ -192,7 +192,6 @@
                   "-DBUILD_CPU_DEMOS=OFF"
                   "-DBUILD_OPENGL3_DEMOS=OFF"
                   "-DBUILD_BULLET2_DEMOS=OFF"
-                   "-DBULLET2_MULTITHREADING=ON"
                   ;; openmw 0.47.0 requires bullet to be built with
                   ;; double precision.
                   ;; See <https://issues.guix.gnu.org/52953> for
@@ -515,24 +514,19 @@ PCM data.")
    (version "0.8.1")
    (source
     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/OpenTTD/nml")
-              (commit version)))
-       (file-name (git-file-name name version))
+       (method url-fetch)
+       (uri (pypi-uri "nml" version))
       (sha256
-        (base32 "03qrpnv2r2kjjfqkc67sqjzxq59li7vb1jhbdhgif8kf2x92805k"))))
+        (base32 "0krs3jac9jc0zqr59ivfl5vibqc15b4yhww73j3c01dla1shvlcj"))))
    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (replace 'check
-            (lambda* (#:key tests? #:allow-other-keys)
-              (when tests?
-                (invoke "make" "-C" "regression")))))))
-    (build-system pyproject-build-system)
-    (native-inputs (list python-setuptools))
-    (propagated-inputs (list python-pillow python-ply))
+     (list #:phases
+           #~(modify-phases %standard-phases
+               (replace 'check
+                 (lambda _
+                   (invoke "make" "-C" "regression"))))))
+    (build-system python-build-system)
+    (propagated-inputs
+     (list python-pillow python-ply))
    (home-page "https://github.com/OpenTTD/nml")
    (synopsis "NML compiler")
    (description
@@ -683,31 +677,22 @@ possible, and it also makes the SGE easy to learn.")
    (license license:lgpl3+)))

 (define-public python-pyscroll
-  ;; No tags, no releases, not clear which commit corresponds to which PyPI
-  ;; release. But PyPI has no tests, so need to use git.
-  (let ((commit "31e1c282d09542ec89c6c1ac3ee6a1ff991ff5c2")
-        (revision "1"))
-    (package
-      (name "python-pyscroll")
-      (version (git-version "2.31" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url "https://github.com/bitcraft/pyscroll")
-                (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32
-           "1mqi8ccxi7vk63hw7klxjzd8jp6lnnw5q70nvrzmgq0jxpp61h7y"))))
-      (build-system pyproject-build-system)
-      (native-inputs (list python-pytest python-setuptools))
-      (propagated-inputs (list python-pygame))
-      (home-page "https://github.com/bitcraft/pyscroll")
-      (synopsis "Fast scrolling maps library for pygame")
-      (description "@code{pyscroll} is a simple and fast module
+  (package
+    (name "python-pyscroll")
+    (version "2.31")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "pyscroll" version))
+              (sha256
+               (base32
+                "0w3c58mkkbsyvx9w9hwdizk20pbds800m7v9vg49ydw440dha0hr"))))
+    (build-system python-build-system)
+    (propagated-inputs (list python-pygame))
+    (home-page "https://github.com/bitcraft/pyscroll")
+    (synopsis "Fast scrolling maps library for pygame")
+    (description "@code{pyscroll} is a simple and fast module
 for animated scrolling maps for your new or existing game.")
-      (license license:lgpl3+))))
+    (license license:lgpl3+)))

 (define-public python-pytmx
  (package
@@ -737,9 +722,34 @@ for animated scrolling maps for your new or existing game.")
 It provides smart tile loading with a fast and efficient storage base.")
    (license license:lgpl3+)))

-;; XXX: Currently the pyproject build-system is unable to install multiple
-;; python modules in a single package. This package uses old-style 'build and
-;; 'install for this reason.
+(define-public python-tmx
+  (package
+    (name "python-tmx")
+    (version "1.10")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "mirror://savannah/python-tmx/"
+                           (version-major+minor version) "/tmx-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "073q0prg1nzlkga2b45vhscz374206qh4x68ccg00mxxwagn64z0"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     (list python-six))
+    (home-page "https://python-tmx.nongnu.org")
+    (synopsis "Python library for the @code{Tiled} TMX format")
+    (description
+     "Python TMX reads and writes the @code{Tiled} TMX format in a simple way.
+This is useful for map editors or generic level editors, and it's also useful
+for using a map editor or generic level editor like Tiled to edit your game's
+levels.")
+    (license (list license:asl2.0
+                   ;; Documentation (only available in the source tarball) is
+                   ;; under the CC0 license.
+                   license:cc0))))
+
 (define-public python-xsge
  (package
    (name "python-xsge")
@@ -752,30 +762,20 @@ It provides smart tile loading with a fast and efficient storage base.")
              (sha256
               (base32
                "0g86p5i9lflvblzy7977lmxbsma5hdlz63sk0k8c59vnhg8sij4i"))))
-    (build-system pyproject-build-system)
+    (build-system python-build-system)
    (arguments
-     (list
-      #:tests? #f  ; No tests.
-      #:configure-flags
-      ;; Transformed format for #:phases convenience.
-      #~(map (lambda (pair)
-               (string-join (list (car pair) (cdr pair)) "="))
-             ;; Normal/expected pyproject format.
-             `(("--prefix" . ,#$output)))
-      #:phases
-      #~(modify-phases %standard-phases
-          ;; xSGE's setup.py script does not support one of the Python build
-          ;; system's default flags, "--single-version-externally-managed".
-          (replace 'build
-            (lambda* (#:key configure-flags #:allow-other-keys)
-              (apply invoke "python" "setup.py" "build"
-                     configure-flags)))
-          (replace 'install
-            (lambda* (#:key configure-flags #:allow-other-keys)
-              (apply invoke "python" "setup.py" "install"
-                     configure-flags))))))
-    (native-inputs (list python-setuptools))
-    (propagated-inputs (list python-sge))
+     '(#:phases
+       (modify-phases %standard-phases
+         ;; xSGE's setup.py script does not support one of the Python build
+         ;; system's default flags, "--single-version-externally-managed".
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (invoke "python" "setup.py" "install"
+                     (string-append "--prefix=" (assoc-ref outputs "out"))
+                     "--root=/"))))
+       #:tests? #f)) ; no check target
+    (propagated-inputs
+     (list python-sge))
    (home-page "https://python-sge.github.io/")
    (synopsis "Extensions for the SGE Game Engine")
    (description
@@ -795,11 +795,7 @@ support.")
       (uri (pypi-uri "neteria" version))
       (sha256
        (base32 "1azlix80a6vns2i3z0bdbqk32kx8s2gjh2nvshab235fd9h85yv7"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list #:tests? #f))                ;No tests, also not on github
-    (native-inputs
-     (list python-setuptools))
+    (build-system python-build-system)
    (propagated-inputs
     (list python-rsa))
    (home-page "https://pypi.org/project/neteria/")
@@ -1560,48 +1556,17 @@ interface (API).")
 (define-public python-pygame
  (package
    (name "python-pygame")
-    (version "2.6.1")
+    (version "2.5.2")
    (source (origin
              (method url-fetch)
              (uri (pypi-uri "pygame" version))
              (sha256
               (base32
-                "07zbkyff0vk1pzlaiah9b5jhqy70fmzh0gjw846y1ki9spm05ysn"))))
-    (build-system pyproject-build-system)
+                "0jn2n70hmgr33yc6xzdi33cs5w7jnmgi44smyxfarrrrsnsrxf61"))))
+    (build-system python-build-system)
    (arguments
     (list
-      #:test-flags
-      #~(list
-         ;; This fails collection as it fails to find a test file.
-         "--ignore=test/run_tests__tests/run_tests__test.py"
-         ;; Some display tests fail with a Python segmentation fault.
-         "--ignore=test/display_test.py"
-         "--ignore=test/mouse_test.py"
-         ;; Those fail with ALSA: Couldn't open audio device.
-         "--ignore=test/mixer_test.py"
-         "--ignore=test/mixer_music_test.py"
-         "--deselect=test/base_test.py::BaseModuleTest::test_init"
-         "--deselect=test/base_test.py::BaseModuleTest::test_quit__and_init"
-         ;; Flaky tests.
-         "--ignore=test/surface_test.py"
-         ;; Require clipboard access.
-         "--ignore=test/scrap_test.py"
-         ;; Tests in these files are hanging.
-         "--ignore=test/font_test.py"
-         "--ignore=test/ftfont_test.py"
-         "--ignore=test/run_tests__tests/infinite_loop"
-         ;; Pytest stdout/stderr issues
-         "--deselect=test/controller_test.py::ControllerInteractiveTest::\
-test__get_count_interactive"
-         "--deselect=test/joystick_test.py::JoystickInteractiveTest::\
-test_get_count_interactive"
-         "--ignore-glob=test/run_tests__tests/print_std*/"
-         "--ignore=test/run_tests__tests/failures1/fake_4_test.py"
-         ;; Sysfont issues
-         "--deselect=test/sysfont_test.py::SysfontModuleTest"
-         "--deselect=test/freetype_test.py::FreeTypeFontTest::\
-test_freetype_SysFont_name"
-         "--deselect=test/image_test.py::test_magic")
+      #:tests? #f                 ; tests require pygame to be installed first
      #:phases
      #~(modify-phases %standard-phases
          (add-after 'unpack 'fix-build-config
@@ -1625,12 +1590,9 @@ test_freetype_SysFont_name"
              (substitute* "src_c/mixer.h"
                (("SDL_mixer.h") "SDL2/SDL_mixer.h"))
              (substitute* "src_c/_sdl2/mixer.c"
-                (("SDL_mixer.h") "SDL2/SDL_mixer.h"))))
-          (add-before 'check 'pre-check
-            (lambda _
-              (setenv "XDG_RUNTIME_DIR" (getcwd)))))))
+                (("SDL_mixer.h") "SDL2/SDL_mixer.h")))))))
    (native-inputs
-     (list pkg-config python-numpy python-pytest python-setuptools))
+     (list pkg-config))
    (inputs
     (list freetype
           sdl2
@@ -2092,25 +2054,25 @@ supported.")
              (substitute* "pyxel/__init__.py"
                (("from collections import MutableSequence")
                 "from collections.abc import MutableSequence"))))))
-      (build-system pyproject-build-system)
+      (build-system python-build-system)
      (arguments
-       (list
-        #:tests? #f ; "Tests" are actually example programs that never halt.
-        #:phases
-        #~(modify-phases %standard-phases
-            (add-after 'unpack 'patch-build-files
-              (lambda* (#:key inputs #:allow-other-keys)
-                (substitute* "setup.py"
-                  (("\"pyxel\\.core\\.bin\\.(.*)\"," all arch)
-                   (if (string=? arch "linux") all "")))
-                (substitute* "pyxel/core/Makefile"
-                  (("`sdl2-config")
-                   (string-append "`sdl2-config --prefix="
-                                  (assoc-ref inputs "sdl2"))))))
-            (add-before 'build 'prebuild
-              (lambda _
-                (invoke "make" "-C" "pyxel/core"))))))
-    (native-inputs (list python-setuptools))
+       `(#:tests? #f ; "Tests" are actually example programs that never halt.
+         #:phases
+         (modify-phases %standard-phases
+           (add-after 'unpack 'patch-build-files
+             (lambda* (#:key inputs #:allow-other-keys)
+               (substitute* "setup.py"
+                 (("\"pyxel\\.core\\.bin\\.(.*)\"," all arch)
+                  (if (string=? arch "linux")
+                      all
+                      "")))
+               (substitute* "pyxel/core/Makefile"
+                 (("`sdl2-config")
+                  (string-append "`sdl2-config --prefix="
+                                 (assoc-ref inputs "sdl2"))))))
+           (add-before 'build 'prebuild
+             (lambda _
+               (invoke "make" "-C" "pyxel/core"))))))
      (inputs
       `(("gifsicle" ,gifsicle)
         ("sdl2" ,(sdl-union (list sdl2 sdl2-image)))))
@@ -2300,8 +2262,7 @@ of use.")
                      ;; Demos and tools are Windows-specific:
                      ;; https://github.com/MyGUI/mygui/issues/24.
                      "-DMYGUI_BUILD_DEMOS=FALSE"
-                      "-DMYGUI_BUILD_TOOLS=FALSE"
-                      "-DMYGUI_DONT_USE_OBSOLETE=TRUE")))))
+                      "-DMYGUI_BUILD_TOOLS=FALSE")))))
    (inputs
     (modify-inputs (package-inputs mygui)
       (delete "ogre")
@@ -2314,7 +2275,7 @@ of use.")
 (define-public openmw
  (package
    (name "openmw")
-    (version "0.50.0")
+    (version "0.48.0")
    (source
     (origin
       (method git-fetch)
@@ -2323,26 +2284,12 @@ of use.")
             (commit (string-append "openmw-" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "1a1jhfn6c2awjwz9xskix8ff5v9d45rcfcn2nm4jcgdalb40vz4q"))))
+        (base32 "0amkxfylk1l67d2igihnhhql62xr89wvg1sxbq2rnhczf6vxaj6f"))))
    (build-system cmake-build-system)
    (arguments
-     (list
-      #:tests? #f ;No test target
-      #:configure-flags #~(list "-DOPENMW_USE_SYSTEM_RECASTNAVIGATION=ON")
-      #:phases #~(modify-phases %standard-phases
-                   (add-after 'unpack 'add-qtsvg
-                     (lambda _
-                       (substitute* "components/CMakeLists.txt"
-                         (("Qt::Core")
-                          "Qt::Core Qt::Svg"))))
-                   (add-after 'install 'remove-clip-control-extension
-                     ;; OpenMW crashes if GL_ARB_clip_control extension is supported,
-                     ;; so we have to disable it.
-                     ;; Reverse-z depth buffer functionality will be disabled, but
-                     ;; at least it will not crash.
-                     (lambda _
-                       (wrap-program (string-append #$output "/bin/openmw")
-                         '("MESA_EXTENSION_OVERRIDE" = ("-GL_ARB_clip_control"))))))))
+     `(#:tests? #f ;No test target
+       #:configure-flags (list "-DDESIRED_QT_VERSION=5"
+                               "-DOPENMW_USE_SYSTEM_RECASTNAVIGATION=ON")))
    (native-inputs (list boost doxygen pkg-config))
    (inputs (list bullet
                  ffmpeg
@@ -2351,9 +2298,7 @@ of use.")
                  mygui-gl ;OpenMW does not need Ogre.
                  openal
                  openmw-openscenegraph
-                  qtbase
-                  qttools
-                  qtsvg
+                  qtbase-5
                  recastnavigation
                  sdl2
                  unshield
@@ -2879,7 +2824,7 @@ scripted in a Python-like language.")
 (define-public ericw-tools
  (package
    (name "ericw-tools")
-    (version "0.18.2-rc1")
+    (version "0.18.1")
    (source
     (origin
       (method git-fetch)
@@ -2887,7 +2832,7 @@ scripted in a Python-like language.")
                           (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "0903fn4a5mc4sdx8q36j57fp15f7z246h8jm78x9jfz7sx9xrc3m"))
+        (base32 "11sap7qv0rlhw8q25azvhgjcwiql3zam09q0gim3i04cg6fkh0vp"))
       (patches
        (search-patches "ericw-tools-add-check-for-sse2-in-light.cc.patch"
                        "ericw-tools-gcc-11-pass-const-to-offsetof.patch"))))
@@ -2932,7 +2877,7 @@ scripted in a Python-like language.")
                                   #$(package-version this-package)
                                   "/README.md")))))
           #:tests? #f)) ; No tests
-    (inputs (list embree))
+    (inputs (list embree-2))
    (home-page "https://ericwa.github.io/ericw-tools/")
    (synopsis "Map compiling tools for Quake/Hexen 2")
    (description
@@ -95,7 +95,6 @@
 ;;; Copyright © 2025 Ada Stevenson <adanskana@gmail.com>
 ;;; Copyright © 2025 Gabriel Santos <gabrielsantosdesouza@disroot.org>
 ;;; Copyright © 2025 Aiden Isik <aidenisik+git@member.fsf.org>
-;;; Copyright © 2026 Cayetano Santos <csantosb@inventati.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -208,7 +207,6 @@
  #:use-module (gnu packages networking)
  #:use-module (gnu packages ninja)
  #:use-module (gnu packages ocaml)
-  #:use-module (gnu packages oneapi)
  #:use-module (gnu packages opencl)
  #:use-module (gnu packages pcre)
  #:autoload (gnu packages pascal) (fpc)
@@ -235,6 +233,7 @@
  #:use-module (gnu packages sqlite)
  #:use-module (gnu packages squirrel)
  #:use-module (gnu packages swig)
+  #:use-module (gnu packages tbb)
  #:use-module (gnu packages tcl)
  #:use-module (gnu packages terminals)
  #:use-module (gnu packages texinfo)
@@ -4277,42 +4276,6 @@ alternative layouts Dvorak and Colemak, as well as for the numpad.  Tutorials
 are primarily in English, however some in other languages are provided.")
    (license license:gpl3+)))

-(define-public libsquish
-  (package
-    (name "libsquish")
-    (version "1.15")
-    (source
-     (origin
-       (method url-fetch/tarbomb)
-       (uri (string-append "mirror://sourceforge/libsquish/libsquish-" version
-                           ".tgz"))
-       (sha256
-        (base32 "0sbj2k98ak1jabna7h1vfakdvjb7d7a81l3178c6d230pbp9d1v2"))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:tests? #f ; no tests defined in Makefile, extra/squishtest.cpp fails
-                  ; to build at all
-      #:make-flags
-      #~(list (string-append "INSTALL_DIR=" #$output))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'bootstrap 'use-shared
-            (lambda _
-              (substitute* "config"
-                (("USE_SHARED .*")
-                 "USE_SHARED ?= 1"))))
-          (delete 'configure)))) ;no configure script
-    (home-page "https://sourceforge.net/projects/libsquish/")
-    (synopsis "DXT texture compression library")
-    (description
-     "@code{libsquish} is a lossy software DXT texture compression library.
-It implements the 3 useful DXT flavours (1,3,5) and has SIMD support for
-x86 (SSE) and powerpc (Altivec).  It can be used (as a much slower software
-fallback) instead of the hardware implementations present on most modern
-graphics chips.")
-    (license license:expat)))
-
 (define-public irrlicht
  (package
    (name "irrlicht")
@@ -5402,14 +5365,14 @@ world}, @uref{http://evolonline.org, Evol Online} and
 (define openttd-engine
  (package
    (name "openttd-engine")
-    (version "15.0")
+    (version "14.1")
    (source
     (origin (method url-fetch)
             (uri (string-append "https://cdn.openttd.org/openttd-releases/"
                                 version "/openttd-" version "-source.tar.xz"))
             (sha256
              (base32
-               "1h9m66n34053vzbz33k9n94cszq08rll6d8d185kcvr4pdsdflim"))))
+               "151l05msgfknvfd2pa98n4p01nxw1ainkhc85i7qq5243zqch51c"))))
    (build-system cmake-build-system)
    (inputs
     (list allegro
@@ -5418,7 +5381,7 @@ world}, @uref{http://evolonline.org, Evol Online} and
           icu4c
           libpng
           lzo
-           sdl2
+           sdl
           xz
           zlib))
    (synopsis "Transportation economics simulator game")
@@ -5437,67 +5400,69 @@ engine.  When you start it you will be prompted to download a graphics set.")
    (license (list license:bsd-3 license:gpl2 license:lgpl2.1+ license:zlib))))

 (define openttd-opengfx
-  (package
-    (name "openttd-opengfx")
-    (version "8.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/openttd/opengfx")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32
-         "0rkyxbrfgb67q3crnlpkv0h9nmskn2yfj2i8sbbibxrya8r3whz6"))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:make-flags
-      #~(list (string-append "CC=" #$(cc-for-target))
-              (string-append "INSTALL_DIR="
-                             #$output
-                             "/share/games/openttd/baseset/opengfx")
-              "REPO_DATE=20000101"
-              (string-append "PYTHON="
-                             #$(this-package-native-input "python")
-                             "/bin/python3"))
-      #:phases
-      #~(modify-phases %standard-phases
-          (replace 'configure
-            (lambda _
-              ;; Make sure HOME is writable for GIMP.
-              (setenv "HOME" (getcwd))
+  (let ((commit "3739bbe9bdcd5bfbb2f720a99667f77d31caf02f")
+        (revision "0"))
+    (package
+      (name "openttd-opengfx")
+      (version (git-version "7.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/openttd/opengfx")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "03fhzlv4935868lxpdik7afz8cgsnzwr38a2blzmvy18c4lzc4m3"))))
+      (build-system gnu-build-system)
+      (arguments
+       (list
+        #:make-flags
+        #~(list (string-append "CC=" #$(cc-for-target))
+                (string-append "INSTALL_DIR="
+                               #$output
+                               "/share/games/openttd/baseset/opengfx")
+                "REPO_DATE=20000101"
+                (string-append "PYTHON="
+                               #$(this-package-native-input "python")
+                               "/bin/python3"))
+        #:phases
+        #~(modify-phases %standard-phases
+            (replace 'configure
+              (lambda _
+                ;; Make sure HOME is writable for GIMP.
+                (setenv "HOME" (getcwd))

-              (mkdir-p ".local/share")
-              (symlink (string-append #$(this-package-native-input "shared-mime-info")
-                                      "/share/mime")
-                       ".local/share/mime")
+                (mkdir-p ".local/share")
+                (symlink (string-append #$(this-package-native-input "shared-mime-info")
+                                        "/share/mime")
+                         ".local/share/mime")

-              ;; Redirect stdout, not stderr, to /dev/null. This prevents
-              ;; dos2unix from receiving its version information as a flag.
-              (substitute* "Makefile"
-                (("\\$\\(UNIX2DOS\\) -q --version 2>/dev/null")
-                 "$(UNIX2DOS) -q --version 1>/dev/null")))))
-      ;; The check phase for this package only checks the md5sums of the built
-      ;; GRF files against the md5sums of the release versions. Because we use
-      ;; different software versions than upstream does, some of the md5sums
-      ;; are different. However, the package is still reproducible, it's safe
-      ;; to disable this test.
-      #:tests? #f
-      #:parallel-build? #f))
-    (native-inputs
-     (list dos2unix
-           shared-mime-info
-           gimp
-           grfcodec
-           nml
-           which
-           python))
-    (home-page "http://dev.openttdcoop.org/projects/opengfx")
-    (synopsis "Base graphics set for OpenTTD")
-    (description
-     "The OpenGFX project is an implementation of the OpenTTD base graphics
+                ;; Redirect stdout, not stderr, to /dev/null. This prevents
+                ;; dos2unix from receiving its version information as a flag.
+                (substitute* "Makefile"
+                  (("\\$\\(UNIX2DOS\\) -q --version 2>/dev/null")
+                   "$(UNIX2DOS) -q --version 1>/dev/null")))))
+        ;; The check phase for this package only checks the md5sums of the built
+        ;; GRF files against the md5sums of the release versions. Because we use
+        ;; different software versions than upstream does, some of the md5sums
+        ;; are different. However, the package is still reproducible, it's safe
+        ;; to disable this test.
+        #:tests? #f
+        #:parallel-build? #f))
+      (native-inputs
+       (list dos2unix
+             shared-mime-info
+             gimp
+             grfcodec
+             nml
+             which
+             python))
+      (home-page "http://dev.openttdcoop.org/projects/opengfx")
+      (synopsis "Base graphics set for OpenTTD")
+      (description
+       "The OpenGFX project is an implementation of the OpenTTD base graphics
 set that aims to ensure the best possible out-of-the-box experience.

 OpenGFX provides you with...
@@ -5508,7 +5473,7 @@ OpenGFX provides you with...
@item Different river and sea water.
@item Snow-aware buoys.
@end enumerate")
-    (license license:gpl2)))
+      (license license:gpl2))))

 (define openttd-opensfx
  (package
@@ -5654,7 +5619,7 @@ Transport Tycoon Deluxe.")
       (sha256
        (base32 "0kd4zd48352q74jv0kgh8asgksbnq2441lk894r0jm16iigsgg88"))))
    (inputs (modify-inputs (package-inputs openttd)
-              (append zstd harfbuzz)))
+              (append sdl2 zstd harfbuzz)))
    (arguments
     (substitute-keyword-arguments (package-arguments openttd)
       ((#:phases phases '%standard-phases)
@@ -6700,7 +6665,7 @@ safety of the Chromium vessel.")
           python-pytmx
           python-pillow
           python-prompt-toolkit
-           python-pydantic
+           python-pydantic-2
           python-pygame-menu
           python-pyyaml
           python-requests))
@@ -8849,7 +8814,7 @@ making Yamagi Quake II one of the most solid Quake II implementations available.
 (define-public nudoku
  (package
    (name "nudoku")
-    (version "7.0.0")
+    (version "6.0.0")
    (source
     (origin
       (method git-fetch)
@@ -8858,7 +8823,7 @@ making Yamagi Quake II one of the most solid Quake II implementations available.
             (commit version)))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "07y7278s3k8dvpsv2vykfyzkbiv9sh62lvmmzrpj2nyf915pc3g2"))))
+        (base32 "0wy4ck79avbhj5nxcngldaflhx0xx28pcrsmx5a1rvx6kinnxm4f"))))
    (build-system gnu-build-system)
    (native-inputs
     (list autoconf automake gettext-minimal pkg-config))
@@ -9905,7 +9870,7 @@ your score gets higher, you level up and the blocks fall faster.")
 (define-public endless-sky
  (package
    (name "endless-sky")
-    (version "0.10.16")
+    (version "0.10.14")
    (source
     (origin
       (method git-fetch)
@@ -9914,7 +9879,7 @@ your score gets higher, you level up and the blocks fall faster.")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "1dk25wgbl385dwplq2a6wsdv53q6pylrqqkqrmvn59z7sd8vjywr"))))
+        (base32 "198ijk95qhq5qicp27f26g0pqsqdgjyb9ll3dmd3dq8b68j3xyfc"))))
    (build-system cmake-build-system)
    (arguments
     (list #:configure-flags #~(list "-DES_USE_VCPKG=0"
@@ -9934,9 +9899,7 @@ your score gets higher, you level up and the blocks fall faster.")
                     (("games\\)") "bin)")))))))
    (inputs
     (list catch2-3
-           flac
           glew
-           libavif
           libjpeg-turbo
           libmad
           libpng
@@ -10228,7 +10191,7 @@ via the in-game download manager.")
      (inputs
       (list alsa-lib
             eudev
-             ffmpeg
+             ffmpeg-6
             glib
             glew
             gtk+-2
@@ -10261,7 +10224,7 @@ to download and install them in @file{$HOME/.stepmania-X.Y/Songs} directory.")
 (define-public oshu
  (package
    (name "oshu")
-    (version "2.0.3")
+    (version "2.0.1")
    (source
     (origin
       (method git-fetch)
@@ -10271,7 +10234,7 @@ to download and install them in @file{$HOME/.stepmania-X.Y/Songs} directory.")
       (file-name (git-file-name name version))
       (sha256
        (base32
-         "0hk0yidmkrqj0mg6pjmwdzkaz8vvdsxxxvprj1qxjblslj2h8lvd"))))
+         "1g598incc6zlls876slgwqblwiwiszkmqa4xpzw0z7mbjmmzsizz"))))
    (build-system cmake-build-system)
    (arguments
     `(#:phases
@@ -10282,7 +10245,7 @@ to download and install them in @file{$HOME/.stepmania-X.Y/Songs} directory.")
    (native-inputs
     (list pkg-config))
    (inputs
-     (list cairo ffmpeg-6 pango sdl2 sdl2-image))
+     (list cairo ffmpeg-4 pango sdl2 sdl2-image))
    (home-page "https://github.com/fmang/oshu/")
    (synopsis "Rhythm game in which you click on circles")
    (description "@i{oshu!} is a minimalist variant of the @i{osu!} rhythm game,
@@ -10811,27 +10774,19 @@ Orcus Dome from evil.")
 (define-public endgame-singularity
  (package
    (name "endgame-singularity")
-    (version "1.1")
+    (version "1.00")
    (source
     (origin
-       ;; TODO: Build from Git, resolve the issue:
-       ;; FileNotFoundError: [Errno 2] No such file or directory: 'git'
       (method url-fetch)
       (uri (string-append
             "https://github.com/singularity/singularity/releases/download/v"
             version "/singularity-" version ".tar.gz"))
       (sha256
        (base32
-         "1nhg9g39d6fwrz1qxzpvi8j0k9lxhm61wys8w72rc6zr1gl0c0n2"))))
+         "0wcidpcka0xbqcnfi62bfq2yrhyh83z4dwz1mjnnjvp9v5l74x2y"))))
    (build-system pyproject-build-system)
-    (native-inputs
-     (list python-pytest
-           python-polib
-           python-setuptools))
-    (inputs
-     (list python-minimal-wrapper
-           python-pygame
-           python-numpy))
+    (native-inputs (list python-pytest python-polib python-setuptools))
+    (inputs (list python-minimal-wrapper python-pygame python-numpy))
    (home-page "https://github.com/singularity/singularity")
    (synopsis "Strategy game about an AI")
    (description
@@ -11605,7 +11560,7 @@ can be downloaded from @url{https://zero.sjeng.org/best-network}.")
                      (string-append "PREFIX=" #$output))))
          (replace 'build (assoc-ref gnu:%standard-phases 'build))
          (replace 'install (assoc-ref gnu:%standard-phases 'install)))))
-    (inputs (list qtbase-5 qtsvg-5 qtwayland-5))
+    (inputs (list qtbase-5 qtsvg-5))
    (home-page "https://portnov.github.io/qcheckers/")
    (synopsis "Qt-based checkers boardgame")
    (description "QCheckers, formerly known as KCheckers, is a is a Qt version
@@ -11789,7 +11744,7 @@ and chess engines.")
    (native-inputs
     (list qttools-5))
    (inputs
-     (list qtbase-5 qtmultimedia-5 qtspeech-5 qtsvg-5 qtwayland-5 zlib))
+     (list qtbase-5 qtmultimedia-5 qtspeech-5 qtsvg-5 zlib))
    (arguments
     (list
      #:tests? #f
@@ -11803,14 +11758,7 @@ and chess engines.")
              (substitute* "chessx.pro"
                (("\\$\\$\\[QT_INSTALL_BINS\\]/lrelease")
                 (search-input-file inputs "/bin/lrelease")))))
-          (add-after 'fix-paths 'fix-library-paths
-            (lambda _
-              ;; Otherwise it won't find the wayland shell integration
-              ;; or qt plugin for wayland-egl.
-              (substitute* "src/gui/main.cpp"
-                (("QApplication::setLibraryPaths\\(l\\);")
-                 "/* QApplication::setLibraryPaths(l); */"))))
-          (add-after 'fix-library-paths 'make-qt-deterministic
+          (add-after 'fix-paths 'make-qt-deterministic
            (lambda _
              (setenv "QT_RCC_SOURCE_DATE_OVERRIDE" "1")))
          (add-after 'make-qt-deterministic 'disable-versioncheck
@@ -12227,7 +12175,6 @@ game.")  ;thanks to Debian for description
           libircclient
           protobuf-2                   ;remove package when no longer needed
           qtbase-5
-           qtwayland-5
           (sdl-union (list sdl sdl-mixer))
           sqlite
           tinyxml
@@ -12782,7 +12729,7 @@ play; it will look for them at @file{~/.local/share/fheroes2} folder.")
 (define-public vcmi
  (package
    (name "vcmi")
-    (version "1.7.1")
+    (version "1.6.8")
    (source (origin
              (method git-fetch)
              (uri (git-reference
@@ -12791,13 +12738,11 @@ play; it will look for them at @file{~/.local/share/fheroes2} folder.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-                "02i6y7idiigg3hl55fhl6pficx4849zvj5wwi29vsvwkwsx06hw7"))
+                "0sdcaxi9npjz7y6mxpbaz39idhkh05dlj2fz8f8xan21lhailvz4"))
              (patches (search-patches "vcmi-disable-privacy-breach.patch"))))
    (build-system cmake-build-system)
    (arguments
-     (list #:configure-flags #~(list "-DFORCE_BUNDLED_FL=OFF"
-                                     "-DENABLE_INNOEXTRACT=OFF"
-                                     "-DENABLE_MMAI=OFF")
+     (list #:configure-flags #~(list "-DFORCE_BUNDLED_FL=OFF" "-DENABLE_INNOEXTRACT=OFF")
           ;; Test suites do not seem well supported upstream and are disabled by default.
           ;; Pass -DENABLE_TEST to configure to enable.
           #:tests? #f))
@@ -12807,19 +12752,17 @@ play; it will look for them at @file{~/.local/share/fheroes2} folder.")
           fuzzylite
           ;; googletest ; needed for tests, but tests are disabled
           libxkbcommon
-           libsquish
           luajit
           minizip
           pkg-config
           python
           qtbase
-           qtsvg
           qttools
           sdl2
           sdl2-mixer
           sdl2-image
           sdl2-ttf
-           onetbb
+           tbb
           vulkan-headers
           zlib))
    (home-page "https://vcmi.eu/")
@@ -1847,48 +1847,32 @@ utilities for data translation and processing.")
 (define-public python-verde
  (package
    (name "python-verde")
-    (version "1.8.1")
+    (version "1.8.0")
    (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "verde" version))
       (sha256
-        (base32 "1hsya3nlv8fycjglnl9dv29nqnz9rhw2f8q9mp3bp95ixk75ayp9"))))
+        (base32 "1hnh91dsk2dxfbk7p2hv3hajaa396139pd6apabgdrp5b7s54k97"))))
    (build-system pyproject-build-system)
    (arguments
-     ;; tests: 171 passed, 7 deselected, 470 warnings
-     (list
-      #:test-flags
-      ;; AssertionError: Regex pattern did not match.  Input: "Window size '5'
-      ;; is larger than dimensions of the region '(np.float64(-5.0),
-      ;; np.float64(-1.0), np.float64(6.0), np.float64(20.0))'."
-      #~(list (string-append "--deselect=verde/tests/test_coordinates.py"
-                             "::test_rolling_window_oversized_window")
-              ;; Tests below fetch data remotely.
-              "-k" (string-append "not test_minimal_integration_2d_gps"
-                                  " and not test_datasets_locate"
-                                  " and not test_fetch_texas_wind"
-                                  " and not test_fetch_baja_bathymetry"
-                                  " and not test_fetch_rio_magnetic"
-                                  " and not test_fetch_california_gps"))))
-    (native-inputs
-     (list python-cartopy
-           python-distributed    ;for Dask
-           python-matplotlib
-           python-pytest
-           python-pytest-mpl
-           python-setuptools))
-    (propagated-inputs
-     (list python-dask
-           python-numpy
-           python-pandas
-           python-pooch
-           python-scikit-learn
-           python-scipy
-           python-xarray
-           ;; [optional]
-           python-pykdtree
-           python-numba))
+     ;; Tests below fetch data remotely.
+     (list #:test-flags #~(list "-k" (string-append
+                                      "not test_minimal_integration_2d_gps"
+                                      " and not test_datasets_locate"
+                                      " and not test_fetch_texas_wind"
+                                      " and not test_fetch_baja_bathymetry"
+                                      " and not test_fetch_rio_magnetic"
+                                      " and not test_fetch_california_gps"))))
+    (native-inputs (list python-cartopy python-distributed python-pytest
+                         python-setuptools python-wheel))
+    (propagated-inputs (list python-dask
+                             python-numpy
+                             python-pandas
+                             python-pooch
+                             python-scikit-learn
+                             python-scipy
+                             python-xarray))
    (home-page "https://github.com/fatiando/verde")
    (synopsis "Processing and gridding spatial data, machine-learning style")
    (description
@@ -2229,18 +2213,17 @@ databases that are optimized for rendering/tile/map-services.")
 (define-public python-metpy
  (package
    (name "python-metpy")
-    (version "1.7.1")
+    (version "1.7.0")
    (source (origin
              (method url-fetch)
              (uri (pypi-uri "metpy" version))
              (sha256
               (base32
-                "0xfficr4jw6yn0l0nrm4yvymywd7lcp6y0acjyhr5h4bnpd8zzfd"))))
+                "1r3adxf6knplp96s5jp65lahg9r096iaq5hdhzyqpkrmqwyy1mxa"))))
    (build-system pyproject-build-system)
    (arguments
     ;; Too many of the tests in the files below require online data.
     (list
-      ;; tests: 752 passed, 55 skipped, 17 deselected, 1 xfailed
      #:test-flags
      #~(list "--ignore" "tests/io/test_nexrad.py"
              "--ignore" "tests/plots/test_declarative.py"
@@ -234,41 +234,36 @@ color, font attributes (weight, posture), or underlining.")
 (define-public mdpo
  (package
    (name "mdpo")
-    (version "2.1.4")
+    (version "0.3.86") ;the last version without Rust
    (source
     (origin
       (method git-fetch)
       (uri (git-reference
-             (url "https://github.com/mondeja/mdpo")
-             (commit (string-append "v" version))))
+              (url "https://github.com/mondeja/mdpo")
+              (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "02i17xly3yvfk6lpjl6sc15xzq9s3zc814siag1winyqckzl74gj"))))
+        (base32 "130g8ggy0xgk5jmlx23569wmv9fz7fhm8qi46cjj7n4fxr0vnmyx"))))
    (build-system pyproject-build-system)
    (arguments
     (list
+      ;; tests: 91 passed
      #:test-flags
-      #~(list
-         ;; XXX: Most failing test are caused by improper line wrapping.
-         "--ignore=tests/test_unit/test_md2po2md/test_md2po2md_cli.py"
-         "--ignore=tests/test_unit/test_text.py"
-         "--ignore=tests/test_unit/test_command.py"
-         "--ignore=tests/test_unit/test_md2po/test_location.py"
-         "-k" "not test_mark_not_found_as_obsolete")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'relax-requirements
-            (lambda _
-              (substitute* "pyproject.toml"
-                ((".*contextlib-chdir.*") ""))))))) ; Uneeded backport.
+      ;; XXX: The Most of the tests fail because 0.3.86 was released in 2022
+      ;; and depends on python-pytest@6.2.4.
+      ;; 
+      ;; OSError: pytest: reading from stdin while output is captured!
+      ;; Consider using `-s`.
+      #~(list "--ignore=test/test_integration/"
+              "--ignore=test/test_unit/test_md2po/"
+              "--ignore=test/test_unit/test_md2po2md/"
+              "--ignore=test/test_unit/test_mdpo2html/"
+              "--ignore=test/test_unit/test_po2md/")))
    (native-inputs
-     (list python-hatchling
-           python-pytest
+     (list python-pytest
           python-setuptools))
-    (propagated-inputs
-     (list python-importlib-metadata-argparse-version
-           python-md-ulb-pwrap
-           python-polib
+    (inputs
+     (list python-polib
           python-pymd4c))
    (home-page "https://github.com/mondeja/mdpo")
    (synopsis "Markdown file translation utilities using pofiles")
@@ -212,26 +212,26 @@ Polygon meshes, and Extruded polygon meshes.")
    (version "0.1.36")
    (source
     (origin
+       ;; We fetch the sources from the repository since the PyPI archive
+       ;; doesn't contain the CMakeLists.txt file which is useful for
+       ;; integration with other software, such as the openboardview package.
       (method git-fetch)
       (uri (git-reference
             (url "https://github.com/Dav1dde/glad")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "0m55ya1zrmg6n2cljkajy80ilmi5sblln8742fm0k1sw9k7hzn8n"))))
-    (build-system pyproject-build-system)
+        (base32
+         "0m55ya1zrmg6n2cljkajy80ilmi5sblln8742fm0k1sw9k7hzn8n"))))
+    (build-system python-build-system)
    (arguments
-     (list
-      ;; XXX: testing seems complex, see utility/compiletest.sh
-      #:tests? #f
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'install 'install-cmakelists.txt
-            (lambda _
-              (let ((share (string-append #$output "/share/"
-                                          #$(package-name this-package))))
-                (install-file "CMakeLists.txt" share)))))))
-    (native-inputs (list python-setuptools))
+     (list #:phases
+           #~(modify-phases %standard-phases
+               (add-after 'install 'install-cmakelists.txt
+                 (lambda _
+                   (let ((share (string-append #$output "/share/"
+                                               #$(package-name this-package))))
+                     (install-file "CMakeLists.txt" share)))))))
    (home-page "https://github.com/Dav1dde/glad")
    (synopsis "Multi-language GL/GLES/EGL/GLX/WGL loader generator")
    (description "Glad uses the official Khronos XML specifications to
@@ -1445,7 +1445,7 @@ original glmark benchmark by Ben Smith.")
                        (,(getenv "GUIX_PYTHONPATH")))))))))
     (inputs (list guile-3.0            ; for wrap-script
                   libxkbcommon
-                   python python-lxml python-mako python-numpy-1
+                   python python-lxml python-mako python-numpy
                   glslang vulkan-headers vulkan-loader
                   waffle))
     (native-inputs (list pkg-config))
@@ -49,7 +49,6 @@
  #:use-module (guix build-system gnu)
  #:use-module (guix build-system copy)
  #:use-module (guix build-system meson)
-  #:use-module (guix build-system pyproject)
  #:use-module (guix build-system python)
  #:use-module (guix gexp)
  #:use-module (guix git-download)
@@ -83,9 +82,8 @@
  #:use-module (gnu packages photo)
  #:use-module (gnu packages pkg-config)
  #:use-module (gnu packages python)
-  #:use-module (gnu packages python-build)
-  #:use-module (gnu packages python-graphics)
  #:use-module (gnu packages python-xyz)
+  #:use-module (gnu packages python-graphics)
  #:use-module (gnu packages ssh)
  #:use-module (gnu packages textutils)
  #:use-module (gnu packages tls)
@@ -515,12 +513,26 @@ provides the @command{g4music} command.")
              (sha256
               (base32
                "168wcsrkmvq79xmwvbq615msd4q0rg7f57xqicidnr78jx4x37rd"))))
-    (build-system pyproject-build-system)
+    (build-system python-build-system)
+    (inputs
+     (list bash-minimal                 ; for wrap-program
+           gtk+
+           pango
+           python-freetype-py
+           python-jinja2
+           python-lark
+           python-numpy
+           python-pycairo
+           python-pyglm
+           python-pygobject
+           python-pyopengl))
+    (native-inputs
+     (list python-pytest))
    (arguments
     (list
      #:imported-modules `((guix build glib-or-gtk-build-system)
-                           ,@%pyproject-build-system-modules)
-      #:modules '((guix build pyproject-build-system)
+                           ,@%python-build-system-modules)
+      #:modules '((guix build python-build-system)
                  ((guix build glib-or-gtk-build-system) #:prefix glib-or-gtk:)
                  (guix build utils)
                  (ice-9 match))
@@ -544,6 +556,10 @@ provides the @command{g4music} command.")
                              (string-append icons "/scalable/apps/"))
                (install-file "res/com.github.alexhuntley.Plots-symbolic.svg"
                              (string-append icons "/symbolic/apps/")))))
+          (replace 'check
+            (lambda* (#:key tests? #:allow-other-keys)
+              (when tests?
+                (invoke "pytest" "-vv"))))
          (add-after 'wrap 'gi-wrap
            (lambda _
              (let ((prog (string-append #$output "/bin/plots")))
@@ -551,20 +567,6 @@ provides the @command{g4music} command.")
                  `("GI_TYPELIB_PATH" = (,(getenv "GI_TYPELIB_PATH")))))))
          (add-after 'wrap 'glib-or-gtk-wrap
            (assoc-ref glib-or-gtk:%standard-phases 'glib-or-gtk-wrap)))))
-    (inputs
-     (list bash-minimal                 ; for wrap-program
-           gtk+
-           pango
-           python-freetype-py
-           python-jinja2
-           python-lark
-           python-numpy
-           python-pycairo
-           python-pyglm
-           python-pygobject
-           python-pyopengl))
-    (native-inputs
-     (list python-pytest python-setuptools))
    (home-page "https://apps.gnome.org/app/com.github.alexhuntley.Plots/")
    (synopsis "Simple graph plotting")
    (description "Plots makes it easy to visualise mathematical formulae.  In
@@ -2733,43 +2733,30 @@ schemas for settings shared by various components of the GNOME desktop.")
    (license license:lgpl2.1+)))

 (define-public python-liblarch
-  ;; The merge request replacing nose with pytest has not been released yet.
-  ;; Temporarily use a git snapshot.
-  (let ((commit "fe06860ea6f1cd339b5b38485879ec5d9512698c")
-        (revision "0"))
  (package
    (name "python-liblarch")
-    (version (git-version "3.2.0" revision commit))
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/getting-things-gnome/liblarch")
-             (commit commit)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1hvwhqhanwkmavnqxbl276nncvnrhgz92pa8z417d8bk3cirmj0b"))))
-    (build-system pyproject-build-system)
+    (version "3.2.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/getting-things-gnome/liblarch")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "125rmrdbc84lapfh8c77zxnmwas20xdfamqmilhv1smkxn2q4sh3"))))
+    (build-system python-build-system)
    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'check 'start-xserver
-            (lambda* (#:key inputs #:allow-other-keys)
-              (let ((xorg-display ":1"))
-                (system (string-join
-                         (list (search-input-file inputs "/bin/Xvfb")
-                               xorg-display "&")
-                         " "))
-                (setenv "DISPLAY" xorg-display))))
-          (replace 'check
-            (lambda* (#:key tests? test-flags #:allow-other-keys)
-              (when tests?
-                (invoke "./run-tests")))))))
-    (native-inputs (list python-pytest python-setuptools xorg-server-for-tests))
+     `(#:phases (modify-phases %standard-phases
+                  (add-before 'check 'start-xserver
+                    (lambda* (#:key inputs #:allow-other-keys)
+                      (system (format #f "~a/bin/Xvfb :1 &"
+                                      (assoc-ref inputs "xorg-server")))
+                      (setenv "DISPLAY" ":1"))))))
+    (native-inputs (list xorg-server-for-tests))
    (inputs (list gtk+))
    (propagated-inputs (list python-pygobject))
-    (home-page "https://getting-things-gnome.github.io/liblarch")
+    (home-page "https://wiki.gnome.org/Projects/liblarch")
    (synopsis "Library to easily handle complex data structures")
    (description
     "Liblarch is a Python library built to easily handle data structures such
@@ -2779,7 +2766,7 @@ allow you to use your data structure in a @code{Gtk.Treeview}.
 Liblarch support multiple views of one data structure and complex filtering.
 That way, you have a clear separation between your data themselves (Model)
 and how they are displayed (View).")
-      (license license:lgpl3+))))
+    (license license:lgpl3+)))

 (define-public gtg
  (package
@@ -8874,7 +8861,7 @@ the available networks and allows users to easily switch between them.")
 (define-public libxml++
  (package
    (name "libxml++")
-    (version "5.6.0")
+    (version "5.4.0")
    (source
     (origin
       (method git-fetch)
@@ -8883,7 +8870,7 @@ the available networks and allows users to easily switch between them.")
             (commit version)))
       (file-name (git-file-name name version))
       (sha256
-        (base32 "1ckgllfgnfszri57ay41jykwblcilsyldkhiq0x5h50c5av118pj"))))
+        (base32 "0gp8irc5ny9i6bw9fp21p8djgksi1s8l5flbn5blisgfpcb2w820"))))
    (build-system gnu-build-system)
    (propagated-inputs
     (list libxml2))  ;required by .pc file
@@ -12237,62 +12224,61 @@ advanced image management tool")
                           name "-" version ".tar.gz"))
       (sha256
        (base32 "00qfbmbnqwwyxdn6y4729y39wpym8n8n2l6qfd8mvd1xppc9q8gh"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-flags
-      #~(list
-         "--ignore=terminatorlib/"
-         ;; Some of these tests fail due to dbus-python and python-notify.
-         "--ignore=tests/test_prefseditor_keybindings.py")
-      #:imported-modules `((guix build glib-or-gtk-build-system)
-                           ,@%pyproject-build-system-modules)
-      #:modules `((guix build pyproject-build-system)
-                  ((guix build glib-or-gtk-build-system)
-                   #:prefix glib-or-gtk:)
-                  (guix build utils))
-      #:phases
-      (with-extensions (list (pyproject-guile-json))
-        #~(modify-phases %standard-phases
-            (add-after 'unpack 'handle-dbus-python
-              (lambda _
-                ;; python-dbus cannot be found but it's really there.  See
-                ;; https://github.com/SpotlightKid/jack-select/issues/2
-                (substitute* "setup.py"
-                  (("'dbus-python',")
-                   ""))))
-            (replace 'wrap
-              (lambda* (#:key inputs outputs #:allow-other-keys)
-                (wrap-program (string-append #$output "/bin/terminator")
-                  `("GUIX_PYTHONPATH" =
-                    (,(getenv "GUIX_PYTHONPATH")
-                     ,(site-packages inputs outputs)))
-                  `("GI_TYPELIB_PATH" =
-                    (,(getenv "GI_TYPELIB_PATH"))))))
-            (add-after 'wrap 'glib-or-gtk-wrap
-              (assoc-ref glib-or-gtk:%standard-phases 'glib-or-gtk-wrap))))))
+    (build-system python-build-system)
    (native-inputs
-     (list gettext-minimal
-           `(,glib "bin") ;for glib-compile-resources
-           gobject-introspection
-           intltool
-           pkg-config
-           python-psutil
-           python-pytest-runner
-           python-pytest))
+     `(("gettext" ,gettext-minimal)
+       ("glib:bin" ,glib "bin")         ; for glib-compile-resources
+       ("gobject-introspection" ,gobject-introspection)
+       ("intltool" ,intltool)
+       ("pkg-config" ,pkg-config)
+       ("python-psutil" ,python-psutil)
+       ("python-pytest-runner" ,python-pytest-runner)
+       ("python-pytest" ,python-pytest)))
    (inputs
-     (list bash-minimal ;for wrap-program
-           cairo
-           dbus-glib
-           gsettings-desktop-schemas
-           gtk+
-           python-wrapper
-           python-dbus
-           python-notify2
-           python-pycairo
-           python-pygobject
-           vte/gtk+-3))
-    (propagated-inputs (list python-configobj))
+     `(("bash" ,bash-minimal) ; for wrap-program
+       ("cairo" ,cairo)
+       ("dbus-glib" ,dbus-glib)
+       ("gsettings-desktop-schemas" ,gsettings-desktop-schemas)
+       ("gtk+" ,gtk+)
+       ("python" ,python-wrapper)
+       ("python-dbus" ,python-dbus)
+       ("python-notify2" ,python-notify2)
+       ("python-pycairo" ,python-pycairo)
+       ("python-pygobject" ,python-pygobject)
+       ("vte" ,vte/gtk+-3)))
+    (propagated-inputs
+     (list python-configobj))
+    (arguments
+     ;; One test out of 28 fails due to dbus-python and python-notify; skip
+     ;; tests.
+     `(#:tests? #f
+       #:imported-modules ((guix build glib-or-gtk-build-system)
+                           ,@%python-build-system-modules)
+       #:modules ((guix build python-build-system)
+                  ((guix build glib-or-gtk-build-system) #:prefix glib-or-gtk:)
+                  (guix build utils))
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'handle-dbus-python
+           (lambda _
+             ;; python-dbus cannot be found but it's really there.  See
+             ;; https://github.com/SpotlightKid/jack-select/issues/2
+             (substitute* "setup.py"
+               (("'dbus-python',") ""))))
+         (add-after 'install 'wrap-program
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let ((prog (string-append (assoc-ref outputs "out")
+                                        "/bin/terminator"))
+                   (pylib (string-append (assoc-ref outputs "out")
+                                         "/lib/python"
+                                         ,(version-major+minor
+                                           (package-version python))
+                                         "/site-packages")))
+               (wrap-program prog
+                 `("GUIX_PYTHONPATH" = (,(getenv "GUIX_PYTHONPATH") ,pylib))
+                 `("GI_TYPELIB_PATH" = (,(getenv "GI_TYPELIB_PATH")))))))
+         (add-after 'wrap-program 'glib-or-gtk-wrap
+           (assoc-ref glib-or-gtk:%standard-phases 'glib-or-gtk-wrap)))))
    (home-page "https://gnome-terminator.org/")
    (synopsis "Store and run multiple GNOME terminals in one window")
    (description
@@ -12372,7 +12358,7 @@ for usage on small and big screens.")
 (define-public libgit2-glib
  (package
    (name "libgit2-glib")
-    (version "1.2.1")
+    (version "1.2.0")
    (source (origin
              (method url-fetch)
              (uri (string-append "mirror://gnome/sources/" name "/"
@@ -12380,7 +12366,7 @@ for usage on small and big screens.")
                                  name "-" version ".tar.xz"))
              (sha256
               (base32
-                "0pvqp9r6fj32q6gia9kac6iwrz4x0iwrspy7a63vxcq2j1vklhlp"))))
+                "1441w7gzn6m3adhx4g6wcbkmscka2929si963dciyklghgddlc8k"))))
    (build-system meson-build-system)
    (native-inputs
     (list `(,glib "bin") ;; For glib-mkenums
@@ -303,7 +303,7 @@ applications and libraries.  It is used by AqBanking.")
 (define-public aqbanking
  (package
    (name "aqbanking")
-    (version "6.8.5")
+    (version "6.8.2")
    (source
     (origin
       (method git-fetch)
@@ -312,7 +312,7 @@ applications and libraries.  It is used by AqBanking.")
              (commit version)))
       (sha256
        (base32
-         "1xqhhxhr1azqvdn47389h469d3srl5l3n1nx82jx2djbx9sdzdq9"))
+         "0ys5r8lbr1nvd14fr82rs6c16iqfpd1hdz5l9s8l9biy2sq8jh0z"))
       (file-name (git-file-name name version))))
    (build-system gnu-build-system)
    (arguments
--- a/Show More
+++ b/Show More