gnu: node-lts: Update to 24.14.1.

* gnu/packages/node.scm (node-lts): Update to 24.14.1.

Change-Id: I60457e8e8e05e0102feb450655113ba410bd7667

.dir-locals.el

@@ -42,13 +42,9 @@
      ;; For use with 'bug-reference-prog-mode'.  Extra bug-reference
      ;; configuration should be done in your Emacs user configuration file;
      ;; refer to (info (guix) The Perfect Setup).
-     (eval . (setq-local
-              ;; #8545, guix/guix#8545, guix/guix!8545, but not !8545
-              bug-reference-bug-regexp
-              (rx (group (or (seq (zero-or-more "guix/guix") "#")
-                             (seq (one-or-more "guix/guix") "!"))
-                         (group (one-or-more digit))))))
-     (bug-reference-url-format . "https://codeberg.org/guix/guix/issues/%s")
+     (bug-reference-bug-regexp
+      . "\\(<https?://\\bugs\\.gnu\\.org/\\([0-9]+\\)>\\)")
+     (bug-reference-url-format . "https://issues.guix.gnu.org/%s")
 
      (eval . (add-to-list 'completion-ignored-extensions ".go"))
 
@@ -145,7 +141,6 @@
    (eval . (put 'substitute* 'scheme-indent-function 1))
    (eval . (put 'match-record 'scheme-indent-function 3))
    (eval . (put 'match-record-lambda 'scheme-indent-function 2))
-   (eval . (put 'with-fluids 'scheme-indent-function 2))
 
    ;; TODO: Contribute these to Emacs' scheme-mode.
    (eval . (put 'let-keywords 'scheme-indent-function 3))

.guix-authorizations

@@ -16,8 +16,6 @@
   ( ;; primary: "D0C2 EAC1 3310 822D 98DE  B57C E9C5 A2D9 0898 A02F"
    "01FD 85F4 1A7B 7F82 0583  06A5 935E BE07 36DC 857E"
    (name "avp"))
-  ("5D54 CF25 57B2 38E8 8DC1  80A2 2D22 3241 0AB7 4043"
-   (name "baleine"))
   ( ;; primary: "34FF 38BC D151 25A6 E340  A0B5 3453 2F9F AFCA 8B8E"
    "A3A4 B419 0074 087C A7DE  5698 BC45 CA67 E2F8 D007"
    (name "bavier"))

CODEOWNERS

@@ -32,7 +32,6 @@ gnu/packages/assembly\.scm                         @guix/build-tools
 gnu/packages/autogen\.scm                          @guix/build-tools
 gnu/packages/autotools\.scm                        @guix/build-tools
 gnu/packages/bison\.scm                            @guix/build-tools
-gnu/packages/compiler-tools\.scm                   @guix/build-tools
 gnu/packages/m4\.scm                               @guix/build-tools
 gnu/packages/oyacc\.scm                            @guix/build-tools
 gnu/packages/re2c\.scm                             @guix/build-tools
@@ -69,7 +68,6 @@ guix/discovery\.scm                                @guix/core
 guix/docker\.scm                                   @guix/core
 guix/download\.scm                                 @guix/core
 guix/elf\.scm                                      @guix/core
-guix/fossil-download\.scm                          @guix/core
 guix/ftp-client\.scm                               @guix/core
 guix/gexp\.scm                                     @guix/core
 guix/git-authenticate\.scm                         @guix/core
@@ -162,8 +160,6 @@ gnu/system/examples/bare-bones\.tmpl               @guix/documentation
 gnu/system/examples/lightweight-desktop\.tmpl      @guix/documentation
 gnu/system/examples/desktop\.tmpl                  @guix/documentation
 
-gnu/packages/dotnet\.scm                           @guix/dotnet
-
 gnu/packages/electronics\.scm                      @guix/electronics
 gnu/packages/hdl\.scm                              @guix/electronics
 gnu/packages/libftdi\.scm                          @guix/electronics
@@ -182,7 +178,6 @@ guix/scripts/import/elpa\.scm                      @guix/emacs
 tests/import/elpa\.scm                             @guix/emacs
 
 gnu/packages/bootloaders\.scm                      @guix/embedded
-gnu/packages/coreboot\.scm                         @guix/embedded
 gnu/packages/firmware\.scm                         @guix/embedded
 
 gnu/packages/emulators\.scm                        @guix/games
@@ -244,7 +239,6 @@ tests/guix-home\.sh                                @guix/home
 tests/home-import\.scm                             @guix/home
 tests/home-services\.scm                           @guix/home
 
-gnu/packages/fabric-management\.scm                @guix/hpc
 gnu/packages/mpi\.scm                              @guix/hpc
 gnu/packages/oneapi\.scm                           @guix/hpc
 gnu/packages/opencl\.scm                           @guix/hpc
@@ -267,7 +261,6 @@ gnu/installer(\.scm$|/)                            @guix/installer
 gnu/packages/clojure\.scm                          @guix/java
 gnu/packages/java(-.+|)\.scm$                      @guix/java
 gnu/packages/maven(-.+|)\.scm$                     @guix/java
-gnu/packages/netbeans\.scm                         @guix/java
 guix/build/ant-build-system\.scm                   @guix/java
 guix/build/clojure-build-system\.scm               @guix/java
 guix/build/clojure-utils\.scm                      @guix/java
@@ -278,7 +271,6 @@ guix/build-system/ant\.scm                         @guix/java
 guix/build-system/clojure\.scm                     @guix/java
 guix/build-system/maven\.scm                       @guix/java
 
-gnu/packages/javascript\.scm                       @guix/javascript
 gnu/packages/node-xyz\.scm                         @guix/javascript
 gnu/packages/node\.scm                             @guix/javascript
 guix/build-system/node\.scm                        @guix/javascript
@@ -324,7 +316,6 @@ gnu/packages/tor-browsers\.scm                     @guix/mozilla
 
 gnu/packages/ocaml\.scm                            @guix/ocaml
 gnu/packages/coq\.scm                              @guix/ocaml
-gnu/packages/rocq\.scm                             @guix/ocaml
 guix/build/ocaml-build-system\.scm                 @guix/ocaml
 guix/build/dune-build-system\.scm                  @guix/ocaml
 guix/build-system/ocaml\.scm                       @guix/ocaml
@@ -492,7 +483,6 @@ gnu/services/version-control\.scm                  @guix/vcs
 gnu/tests/version-control\.scm                     @guix/vcs
 guix/build/bzr\.scm                                @guix/vcs
 guix/build/cvs\.scm                                @guix/vcs
-guix/build/fossil\.scm                             @guix/vcs
 guix/build/git\.scm                                @guix/vcs
 guix/build/hg\.scm                                 @guix/vcs
 guix/build/svn\.scm                                @guix/vcs

Makefile.am

@@ -104,7 +104,6 @@ MODULES =					\
   guix/discovery.scm				\
   guix/android-repo-download.scm		\
   guix/bzr-download.scm            		\
-  guix/fossil-download.scm			\
   guix/git-download.scm				\
   guix/hg-download.scm				\
   guix/hash.scm					\
@@ -237,7 +236,6 @@ MODULES =					\
   guix/build/asdf-build-system.scm		\
   guix/build/bzr.scm				\
   guix/build/copy-build-system.scm		\
-  guix/build/fossil.scm				\
   guix/build/git.scm				\
   guix/build/hg.scm				\
   guix/build/glib-or-gtk-build-system.scm	\
@@ -457,8 +455,6 @@ AUX_FILES =						\
   gnu/packages/aux-files/findclass.php			\
   gnu/packages/aux-files/guix.vim			\
   gnu/packages/aux-files/guix-nvim.vim			\
-  gnu/packages/aux-files/linux-libre/7.0-arm64.conf	\
-  gnu/packages/aux-files/linux-libre/7.0-x86_64.conf	\
   gnu/packages/aux-files/linux-libre/6.19-arm64.conf	\
   gnu/packages/aux-files/linux-libre/6.19-i686.conf	\
   gnu/packages/aux-files/linux-libre/6.19-x86_64.conf	\
@@ -806,17 +802,17 @@ EXTRA_DIST +=						\
   etc/manifests/upgrade.scm				\
   scripts/guix.in					\
   tests/cve-sample.json					\
-  tests/keys/openpgp/civodul.pub			\
-  tests/keys/openpgp/dsa.pub				\
-  tests/keys/openpgp/ed25519-2.pub			\
-  tests/keys/openpgp/ed25519-2.sec			\
-  tests/keys/openpgp/ed25519-3.pub			\
-  tests/keys/openpgp/ed25519-3.sec			\
-  tests/keys/openpgp/ed25519.pub			\
-  tests/keys/openpgp/ed25519.sec			\
-  tests/keys/openpgp/rsa.pub				\
-  tests/keys/openpgp/signing-key.pub			\
-  tests/keys/openpgp/signing-key.sec			\
+  tests/keys/civodul.pub				\
+  tests/keys/dsa.pub					\
+  tests/keys/ed25519-2.pub				\
+  tests/keys/ed25519-2.sec				\
+  tests/keys/ed25519-3.pub				\
+  tests/keys/ed25519-3.sec				\
+  tests/keys/ed25519.pub				\
+  tests/keys/ed25519.sec				\
+  tests/keys/rsa.pub					\
+  tests/keys/signing-key.pub				\
+  tests/keys/signing-key.sec				\
   tests/test.drv					\
   $(TESTS)
 

NEWS

@@ -18,10 +18,6 @@ Please send Guix bug reports to bug-guix@gnu.org.
 ** Distribution
 *** GNOME updated to version 48
 *** New service for Fossil SCM
-*** TeX Live updated to 2026.1
-
-** Programming interfaces
-*** New (guix fossil-download) module, for fetching Fossil repositories
 
 * Changes in 1.5.0 (since 1.4.0)
 ** Package management

build-aux/test-env.in

@@ -73,8 +73,8 @@ then
 	# Copy the keys so that the secret key has the right permissions (the
 	# daemon errors out when this is not the case.)
 	mkdir -p "$GUIX_CONFIGURATION_DIRECTORY"
-	cp "@abs_top_srcdir@/tests/keys/openpgp/signing-key.sec"	\
-	   "@abs_top_srcdir@/tests/keys/openpgp/signing-key.pub"	\
+	cp "@abs_top_srcdir@/tests/keys/signing-key.sec"	\
+	   "@abs_top_srcdir@/tests/keys/signing-key.pub"	\
 	   "$GUIX_CONFIGURATION_DIRECTORY"
 	chmod 400 "$GUIX_CONFIGURATION_DIRECTORY/signing-key.sec"
     fi

doc/build.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2019-2026 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2019-2025 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
 ;;; Copyright © 2022 Maxim Cournoyer <maxim@guixotic.coop>
 ;;; Copyright © 2025 Florian Pelz <pelzflorian@pelzflorian.de>
@@ -324,31 +324,17 @@ actual file name."
                     ((('span ('@ ('class "category")) ;raw Texinfo 6.8
                              (? string-or-entity?) ...) rest ...)
                      #t)
-                    ((('span                      ;Texinfo 6, post-processed
-                       ('@ ('class "symbol-definition-category"))
-                       (? string-or-entity?) ...) rest ...)
-                     #t)
-                    ((('span                      ;Texinfo 7
-                       ('@ ('class "category-def")) _ ...)
-                      ('span ('strong ('@ ('class "def-name")) _ ...)
-                             _ ...)
-                      rest ...)
+                    ((('span ('@ ('class "symbol-definition-category"))
+                             (? string-or-entity?) ...) rest ...)
                      #t)
                     (x
                      #f))))
 
-              (define (definition-class? class)
-                ;; Return true for "deffn def-line", "deftp def-line", etc.
-                (string-suffix? " def-line" class))
-
               (let ((shtml (call-with-input-file file html->shtml)))
                 (let loop ((shtml shtml)
                            (anchors anchors))
                   (match shtml
-                    ((or ('dt ('@ ('id id) _ ...) rest ...)      ;Texinfo 6
-                         ('dt ('@ ('class (? definition-class?)) ;Texinfo 7
-                                  ('id id))
-                              rest ...))
+                    (('dt ('@ ('id id) _ ...) rest ...)
                      (if (and (string-prefix? "index-" id)
                               (worthy-entry? rest))
                          (alist-cons (anchor-id->key id)
@@ -519,16 +505,10 @@ its <pre class=\"lisp\"> blocks (as produced by 'makeinfo --html')."
                    (loop rest (cons str strings)))
                   ((('*ENTITY* "additional" entity) . rest)
                    (loop rest (cons (entity->string entity) strings)))
-                  ((('*ENTITY* "additional-char" entity) . rest)
-                   (loop rest (cons (string
-                                     (integer->char (string->number entity)))
-                                    strings)))
                   ((('span _ lst ...) . rest)     ;for <span class="roman">
                    (loop (append lst rest) strings))
-                  ((('var ('@ _) name) . rest)    ;for @var{name} within @lisp
+                  ((('var name) . rest)           ;for @var{name} within @lisp
                    (loop rest (cons name strings))) ;XXX: losing formatting
-                  ((('var name) . rest)           ;likewise (Texinfo 6)
-                   (loop rest (cons name strings)))
                   (something
                    (pk 'unsupported-code-snippet something)
                    (primitive-exit 1)))))
@@ -557,10 +537,7 @@ its <pre class=\"lisp\"> blocks (as produced by 'makeinfo --html')."
                           (link (@ (rel "stylesheet")
                                    (type "text/css")
                                    (href #$syntax-css-url)))))
-                  ((or ('pre ('@ ('class "lisp")) ;Texinfo 6
-                             code-snippet ...)
-                       ('pre ('@ ('class "lisp-preformatted"))
-                             code-snippet ...))
+                  (('pre ('@ ('class "lisp")) code-snippet ...)
                    `(pre (@ (class "lisp"))
                          ,@(highlights->sxml*
                             (pair-open/close
@@ -568,16 +545,14 @@ its <pre class=\"lisp\"> blocks (as produced by 'makeinfo --html')."
                                         (concatenate-snippets code-snippet)))
                             anchors)))
 
-                  ;; For Texinfo 6: Replace the ugly <strong> used for @deffn
-                  ;; etc., which translate to <dt>, with more stylable
-                  ;; markup.  No such post-processing is needed for @deffn
-                  ;; with Texinfo 7.
+                  ;; Replace the ugly <strong> used for @deffn etc., which
+                  ;; translate to <dt>, with more stylable markup.
                   (('dt ('@ ('id id))             ;raw Texinfo 6.8
                         ('span ('@ ('class "category")) category ...)
                         ('span ('strong thing)
                                anchor))
                    (highlight-definition id category thing '()))
-                  (('dt ('@ ('id id))             ;ditto
+                  (('dt (@ ('id id))
                         ('span ('@ ('class "category")) category ...)
                         ('span ('strong thing)
                                (? space?) ('em args ...)
@@ -833,9 +808,16 @@ in SOURCE."
                 (match sxml
                   (('*TOP* decl body ...)
                    `(*TOP* ,decl ,@(map loop body)))
-                  ((or ('body ('@ _) elements ...)
-                       ('body elements ...))
-                   `(body ,(navigation-bar
+                  (('head elements ...)
+                   ;; Add reference to our own manual CSS, which provides
+                   ;; support for the language menu.
+                   `(head ,@elements
+                          (link (@ (rel "stylesheet")
+                                   (type "text/css")
+                                   (href #$manual-css-url)))))
+                  (('body ('@ attributes ...) elements ...)
+                   `(body (@ ,@attributes)
+                          ,(navigation-bar
                             ;; TODO: Add "Contribute" menu, to report
                             ;; errors, etc.
                             (list (menu-dropdown
@@ -970,12 +952,12 @@ makeinfo OPTIONS."
                         (mkdir-p (string-append #$output "/"
                                                 (normalize language)))
                         (setenv "LANGUAGE" language)
-                        (apply invoke #$(file-append texinfo-7 "/bin/makeinfo")
+                        (apply invoke #$(file-append texinfo "/bin/makeinfo")
                                "-o" (string-append #$output "/"
                                                    (normalize language)
                                                    "/html_node")
                                opts)
-                        (apply invoke #$(file-append texinfo-7 "/bin/makeinfo")
+                        (apply invoke #$(file-append texinfo "/bin/makeinfo")
                                "--no-split"
                                "-o"
                                (string-append #$output "/"
@@ -1427,7 +1409,7 @@ commit date (an integer)."
                                  (string-append #+tar "/bin:"
                                                 #+xz "/bin:"
                                                 #+zstd "/bin:"
-                                                #+texinfo-7 "/bin"))
+                                                #+texinfo "/bin"))
                          (invoke "tar" "xf" #$(package-source guile))
                          (mkdir-p (string-append #$output "/en/html_node"))
 
@@ -1446,7 +1428,7 @@ commit date (an integer)."
                               (string-append #$output "/en/html_node")))))))))
 
 (define %guile-manual-base-url
-  "https://doc.guix.gnu.org/guile/latest/en")
+  "https://www.gnu.org/software/guile/manual")
 
 (define (for-all-languages index)
   (map (lambda (language)

doc/contributing.texi

@@ -706,7 +706,13 @@ Manual}).  To set it up, enable it in the relevant modes:
 
 When working from a Git checkout of Guix, setup is automatic:
 @code{bug-reference} automatically detects that the project is hosted on
-Codeberg and infers the issue and pull request URL from there.
+Codeberg@footnote{
+@c 'vc-git-repository-url' is used by
+@c 'bug-reference-setup-from-vc-alist', which checks for one of these
+@c names for the remote.
+As of Emacs@tie{}30.2, auto-detection works if and
+only if the Git remote is called @code{upstream} or @code{origin}.} and
+infers the issue and pull request URL from there.
 
 @node Guile Studio
 @subsection Guile Studio
@@ -1661,9 +1667,6 @@ can be turned into a version string via @code{git-version}, for example
 @code{rust-pipewire-0.8.0.fd3d8f7} and @code{rust-pubgrub-0.3.0.b70cf70}.
 @end table
 
-When contributing Rust packages, we should have all modifications to these
-two modules, in the same commit as the package we are contributing.
-
 To avoid merge conflicts with changes from multiple branches, these two modules
 are maintained by the Rust team (@pxref{Teams}).
 
@@ -1693,68 +1696,6 @@ tree.
 @xref{Packaging Rust Crates,,, guix-cookbook, GNU Guix Cookbook}, for
 packaging workflow.
 
-@subsubsection Commit messages
-
-The commit message must have a general brief mention to entry changes
-in @code{(gnu packages rust-crates)}. For changes in @code{(gnu packages
-rust-sources)}, the commit message must explicitly mention all changes to the
-packages.
-
-Here are some examples for different situations:
-
-@itemize
-
-@item
-Adding a new Rust package:
-
-@example
-gnu: Add catppuccin-whiskers.
-
-* gnu/packages/rust-apps.scm (catppuccin-whiskers): New variable.
-* gnu/packages/rust-crates.scm (lookup-cargo-inputs)
-[catppuccin-whiskers]: New entry.
-@end example
-
-@item
-Updating a simple package:
-
-@example
-gnu: watchexec: Update to 2.3.2.
-
-* gnu/packages/rust-apps.scm (watchexec): Update to 2.3.2.
-* gnu/packages/rust-crates.scm (lookup-cargo-inputs)[watchexec]:
-Update entry.
-@end example
-
-@item
-Updating a package with sources:
-
-@example
-gnu: typst: Update to 0.14.0.
-
-* gnu/packages/rust-apps.scm (typst): Update to 0.14.0.
-[arguments]<#:rust>: Use rust-1.88.
-* gnu/packages/rust-crates.scm (lookup-cargo-inputs)[typst]: Update
-entry.
-[rust-syntect-5]: Rename to rust-syntect-5.2.
-[rust-syntect-5.3]: New entry.
-* gnu/packages/rust-sources.scm (rust-hypher-0.1): Update to 0.1.6.
-(rust-syntect-5): Rename to rust-syntect-5.2.
-[inputs]: Rename cargo-inputs rust-syntect-5 to rust-syntect-5.2.
-(rust-syntect-5.3): New variable.
-@end example
-
-@end itemize
-
-@subsubsection Resolving merge conflicts in Pull Requests
-
-For Rust crates, the recommended way to solve merge conflicts is to drop all
-changes to @code{gnu/packages/rust-crates.scm}, rebase onto the desired branch
-and run the lockfile importer again, manually adding back all relevant snippets
-(if any).
-
-@xref{Common Workflow for Resolving Merge Conflicts on Existing Pull Requests,,, guix-cookbook, GNU Guix Cookbook} for
-a suggested workflow on resolving merge conflicts.
 
 @node Elm Packages
 @subsection Elm Packages
@@ -2709,7 +2650,6 @@ applications settings page}, granting read/write access to the
 
 @cindex decision making
 @cindex consensus seeking
-Every contribution to the project involves a form of decision making.
 It is expected from all contributors, and even more so from committers,
 to help build consensus and make decisions based on consensus.  By using
 consensus, we are committed to finding solutions that everyone can live
@@ -2724,26 +2664,6 @@ resolve the deadlock.  To learn what consensus decision making means and
 understand its finer details, you are encouraged to read
 @url{https://www.seedsforchange.org.uk/consensus}.
 
-Day-to-day decision making, for instance discussions about pull requests
-(@pxref{Reviewing the Work of Others}), happens informally among
-interested parties such as contributors and members of the relevant
-teams (@pxref{Teams}).
-
-@cindex GCD, Guix Consensus Documents
-@cindex Guix Consensus Documents (GCD)
-Decisions that are expected to have an impact on most contributors
-and/or on the broader user community---e.g., changes to project-wide
-policies, to core functionality, and so on---are made following the
-@acronym{GCD, Guix Consensus Document} process.  The process provides a
-framework to formalize proposals and draw attention to them, to leave
-time for interested parties to discuss them, and to collectively accept
-or withdraw them based on input from participating team members.  It is
-defined in
-@uref{https://consensus.guix.gnu.org/gcd/001-gcd-process.html,
-GCD@tie{}001}.  Past GCDs can be seen at
-@uref{https://consensus.guix.gnu.org}, and discussions take place at
-@uref{https://codeberg.org/guix/guix-consensus-documents}.
-
 @node Commit Access
 @section Commit Access
 

doc/guix-cookbook.texi

@@ -146,8 +146,6 @@ Packaging Rust Crates
 * Common Workflow for Rust Packaging::
 * Cargo Workspaces and Development Snapshots::
 * Using Rust Libraries in Other Build Systems::
-* Common Workflow for Updating Existing Rust Packages::
-* Common Workflow for Resolving Merge Conflicts on Existing Pull Requests::
 
 System Configuration
 
@@ -646,11 +644,9 @@ This field contains a description of the source code origin.  The
 
 @enumerate
 @item  The method, here @code{url-fetch} to download via HTTP/FTP, but other methods
-    exist, such as @code{git-fetch} for Git repositories.  @xref{origin
-    Reference,,, guix, GNU Guix Reference Manual}, for more info on the
-    available download methods.
+    exist, such as @code{git-fetch} for Git repositories.
 @item  The URI, which is typically some @code{https://} location for @code{url-fetch}.  Here
-    the special @code{mirror://gnu} refers to a set of well known locations, all of
+    the special `mirror://gnu` refers to a set of well known locations, all of
     which can be used by Guix to fetch the source, should some of them fail.
 @item  The @code{sha256} checksum of the requested file.  This is essential to ensure
     the source is not corrupted.  Note that Guix works with base32 strings,
@@ -1118,8 +1114,7 @@ Let's discuss those fields in depth.
 @subsubsection @code{git-fetch} method
 
 Unlike the @code{url-fetch} method, @code{git-fetch} expects a @code{git-reference} which takes
-a Git repository and a commit (@pxref{origin Reference,,, guix, GNU Guix
-Reference Manual}).  The commit can be any Git reference such as
+a Git repository and a commit.  The commit can be any Git reference such as
 tags, so if the @code{version} is tagged, then it can be used directly.  Sometimes
 the tag is prefixed with a @code{v}, in which case you'd use @code{(commit (string-append
 "v" version))}.
@@ -1165,7 +1160,7 @@ Snippets might need additional Guile modules which can be imported from the
 
 There are 3 different input types.  In short:
 
-@table @code
+@table @asis
 @item native-inputs
 Required for building but not runtime -- installing a package
 through a substitute won't install these inputs.
@@ -1233,14 +1228,9 @@ It's advised to separate outputs only when you've shown it's worth it: if the
 output size is significant (compare with @code{guix size}) or in case the package is
 modular.
 
-@xref{Packages with Multiple Outputs,,, guix, GNU Guix Reference
-Manual}, for more info.
-
 @subsubsection Build system arguments
 
-The @code{arguments} is a keyword-value list used to configure the build
-process; these arguments are passed to the @dfn{build system}
-(@pxref{Build Systems,,, guix, GNU Guix Reference Manual}).
+The @code{arguments} is a keyword-value list used to configure the build process.
 
 The simplest argument @code{#:tests?} can be used to disable the test suite when
 building the package.  This is mostly useful when the package does not feature
@@ -1256,7 +1246,7 @@ following flags
                    "CC=gcc")
 @end lisp
 
-translate into:
+translate into
 
 @example
 $ make CC=gcc prefix=/gnu/store/...-<out>
@@ -1276,9 +1266,7 @@ Similarly, it's possible to set the configure flags:
 The @code{%build-inputs} variable is also generated in scope.  It's an association
 table that maps the input names to their store directories.
 
-The @code{phases} keyword lists the sequential steps of the build
-system.  @xref{Build Phases,,, guix, GNU Guix Reference Manual}, for
-details; in a nutshell,
+The @code{phases} keyword lists the sequential steps of the build system.  Typically
 phases include @code{unpack}, @code{configure}, @code{build}, @code{install} and @code{check}.  To know
 more about those phases, you need to work out the appropriate build system
 definition in @samp{$GUIX_CHECKOUT/guix/build/gnu-build-system.scm}:
@@ -1393,12 +1381,10 @@ Its return value is ignored.
 
 @subsubsection Code staging
 
-The astute reader may have noticed the hash-tilde and hash-dollar syntax in the
+The astute reader may have noticed the quasi-quote and comma syntax in the
 argument field.  Indeed, the build code in the package declaration should not be
 evaluated on the client side, but only when passed to the Guix daemon.  This
 mechanism of passing code around two running processes is called @uref{https://arxiv.org/abs/1709.00833, code staging}.
-@xref{G-Expressions,,, guix, GNU Guix Reference Manual}, for info on the
-this mechanism, which is called @dfn{g-expressions}.
 
 @subsubsection Utility functions
 
@@ -1407,7 +1393,7 @@ equivalent system invocations (@code{make}, @code{mkdir}, @code{cp}, etc.)@: com
 regular ``Unix-style'' installations.
 
 Some like @code{chmod} are native to Guile.
-@xref{File System,,, guile, Guile reference manual} for a complete list.
+@xref{,,, guile, Guile reference manual} for a complete list.
 
 Guix provides additional helper functions which prove especially handy in the
 context of package management.
@@ -1541,9 +1527,9 @@ The recursive importer won't import packages for which Guix already has package
 definitions, except for the very first.
 
 Not all applications can be packaged this way, only those relying on a select
-number of supported systems.
-@xref{Invoking guix import,,, guix, GNU Guix Reference Manual} for
-the full list of importers.
+number of supported systems.  Read about the full list of importers in
+the guix import section of the manual
+(@pxref{Invoking guix import,,, guix, GNU Guix Reference Manual}).
 
 @node Automatic update
 @subsubsection Automatic update
@@ -1563,9 +1549,6 @@ well:
 $ guix refresh hello --update
 @end example
 
-@xref{Invoking guix refresh,,, guix, GNU Guix Reference Manual}, for
-more info.
-
 @node Inheritance
 @subsubsection Inheritance
 
@@ -1590,9 +1573,7 @@ noticed that a significant number of them have a @code{inherit} field:
 
 All unspecified fields are inherited from the parent package.  This is very
 convenient to create alternative packages, for instance with different source,
-version or compilation options.  @xref{Defining Package Variants,,, guix,
-GNU Guix Reference Manual}, for a discussion of inheritance and of other
-ways to create package variants.
+version or compilation options.
 
 @node Getting help
 @subsection Getting help
@@ -1633,8 +1614,7 @@ hopefully we will see your contributions soon!
 
 @itemize
 @item
-@xref{Defining Packages,,, guix, GNU Guix Reference Manual}, for the
-@code{package} reference in the manual.
+The @uref{https://guix.gnu.org/manual/en/html_node/Defining-Packages.html, package reference in the manual}
 
 @item
 @uref{https://gitlab.com/pjotrp/guix-notes/blob/master/HACKING.org, Pjotr’s hacking guide to GNU Guix}
@@ -1667,8 +1647,6 @@ $ guix shell rust rust:cargo cargo-audit cargo-license
 * Common Workflow for Rust Packaging::
 * Cargo Workspaces and Development Snapshots::
 * Using Rust Libraries in Other Build Systems::
-* Common Workflow for Updating Existing Rust Packages::
-* Common Workflow for Resolving Merge Conflicts on Existing Pull Requests::
 @end menu
 
 @node Common Workflow for Rust Packaging
@@ -1727,15 +1705,6 @@ $ cargo audit
 $ cargo license
 @end example
 
-@quotation Note
-Before running @command{cargo generate-lockfile}, make sure you have checked
-out the correct tag for the version you are packaging. This ensures that
-@code{Cargo.toml} matches the file used in the packages's @code{source} field.
-To make sure, you can obtain the exact source with @command{./pre-inst-env guix
-build --source <package>} and only then run @command{cargo generate-lockfile} on
-that source tree.
-@end quotation
-
 @command{cargo generate-lockfile} updates dependencies to compatible versions.
 Applying it to all Rust applications helps reduce a great number of Rust
 libraries we need to check later.  Although sometimes libraries may fail to
@@ -2018,316 +1987,6 @@ method, one of the most popular choices for Traditional Chinese users.")
     (license license:lgpl2.1+)))
 @end lisp
 
-@node Common Workflow for Updating Existing Rust Packages
-@subsubsection Common Workflow for Updating Existing Rust Packages
-
-For this example, we'll update @code{niri}. The package definition looks like
-this initially:
-
-@lisp
-(define-public niri
-  (package
-   (name "niri")
-   (version "25.08")
-   (source (origin
-             (method git-fetch)
-             (uri (git-reference
-                   (url "https://github.com/YaLTeR/niri")
-                   (commit (string-append "v" version))))
-             (file-name (git-file-name name version))
-             (sha256
-              (base32
-               "09nsxd211mly8r1ys2lq6ia4jxgb980h1axrbgw748r0knfbbj7n"))))
-   (build-system cargo-build-system)
-...
-@end lisp
-
-We start by running the usual @command{guix refresh -u niri}.
-
-The @command{-u} flag will update in place the version and hash for the
-@code{niri} package.
-
-The package definition will then look like this:
-
-@lisp
-(define-public niri
-  (package
-   (name "niri")
-   (version "25.11")
-   (source (origin
-             (method git-fetch)
-             (uri (git-reference
-                   (url "https://github.com/YaLTeR/niri")
-                   (commit (string-append "v" version))))
-             (file-name (git-file-name name version))
-             (sha256
-              (base32
-               "0752qm245wc2gak0jhp0fnr0rdj3z54m2h97k3cxbjym9pcn658n"))))
-   (build-system cargo-build-system)
-...
-@end lisp
-
-This means the source field was updated successfully, thus we can now proceed to
-get the updated source with @command{guix build --source niri} as follows:
-
-@example shell
-$ cp -r $(./pre-inst-env guix build --source niri) /tmp
-$ cd /tmp/<hash>-niri-25.11-checkout/
-@end example
-
-@quotation Note
-In this specific example, the source is a git checkout, thus a directory. If the
-package source is a compressed archive, you would at this point extract it to a
-directory to proceed.
-@end quotation
-
-Now, given that we have access to the @code{Cargo.toml} file, we can now run
-the following inside the checkout:
-
-@example shell
-$ guix shell rust rust:cargo -- cargo generate-lockfile
-$ guix shell rust rust:cargo -- cargo audit
-$ guix shell rust rust:cargo -- cargo license
-@end example
-
-@quotation Note
-Sometimes the package will require a more up-to-date version of rust, that is
-not yet the default rust on guix. For these cases you can use:
-@example shell
-$ guix shell -e "(@ (gnu packages rust) rust-1.90)" \
-     -e '`(,(@ (gnu packages rust) rust-1.90) "cargo")'
-@end example
-@end quotation
-
-The first command will ensure that all cargo dependencies are up to date
-and semver compatible, while also providing some other benefits, as further
-explained in @ref{Common Workflow for Rust Packaging}.
-
-The following command will warn if there are any known vulnerabilities in the
-crates being imported. The last one will output the license information of all
-the dependent crates.
-
-If everything looks good, we can now replace the contents of the @code{niri}
-indentifier, located inside the @code{lookup-cargo-inputs} variable on the
-bottom of the @file{gnu/packages/rust-crates.scm} module, with the newer updated
-crates by running the importer on the lockfile as follows:
-
-@example shell
-$ guix import -i /path/to/gnu/packages/rust-crates.scm \
-     crate -f Cargo.lock niri
-@end example
-
-@quotation Note
-For the purpose of contributing a package to Guix (@pxref{Contributing,,,
-guix, GNU Guix Reference Manual}), there is no need to cleanup the leftover
-crates as a result of the package update.  This is tasked to the rust-team
-(@pxref{Teams,,, guix, GNU Guix Reference Manual}) to periodically run a
-convenient script in @code{etc/teams/rust} to cleanup unused crates from
-@file{gnu/packages/rust-crates.scm}.
-@end quotation
-
-We then need to check whether the importer has placed some TODOs for us,
-inside @file{gnu/packages/rust-crates.scm} (you can use @command{git diff --
-gnu/packages/rust-crates.scm} for this purpose).
-
-There are a few types of TODO messages that you might encounter during this
-step, each type requiring you to perform a different action.
-
-The first one we encounter in our example is:
-
-@lisp
-(define rust-libdisplay-info-sys-0.3.0
-  ;; TODO REVIEW: Check bundled sources.
-  (crate-source "libdisplay-info-sys" "0.3.0"
-                "07xmkc2aqcdn6d58321y87rd3gzdr4nx3ncm1mmrr7w1p1ahsn96"))
-@end lisp
-
-This specific TODO message tells us that there is a high probability of
-encountering bundled sources within a crate definition generated by the
-importer.
-
-We then check if there are any bundled sources within the
-@code{rust-libdisplay-info-sys-0.3.0} crate. Since there are none (in our
-example), we can simply remove the TODO line, and continue to the next TODO.
-
-If there were any bundled sources inside the crate, we would have to patch
-it with a snippet, in order to unbundle it. You can see some examples on
-how to unbundle inside @file{gnu/packages/rust-crates.scm} (search for the
-@code{#:snippet} keyword).
-
-@quotation Note
-If the unbundle is considered too difficult to be executed (e.g. the effort
-needed to unbundle is unreasonable), the @code{TODO REVIEW} line should be
-converted to a regular TODO comment explicitly stating the unbundle was not done
-(e.g. @code{TODO: Unbundle rust-libdisplay-info-sys.}).
-@end quotation
-
-Continuing, another TODO message we encounter in this example is the following:
-
-@lisp
-(define rust-smithay-0.7.0.d743e1a
-  ;; TODO REVIEW: Define standalone package if this is a workspace.
-  (origin
-    (method git-fetch)
-    (uri (git-reference (url "https://github.com/Smithay/smithay.git")
-                        (commit "d743e1a317fa0f01d1c4cadd96d277a1ec7b59d9")))
-    (file-name (git-file-name "rust-smithay" "0.7.0.d743e1a"))
-    (sha256 (base32 "11327mhxxf844bs0v5bw1g9bzjssnzhidsissywy6kwng16x727v"))))
-@end lisp
-
-This specific TODO message tells us that there is a high probability of the
-@code{rust-smithay-0.7.0.d743e1a} crate being a workspace.
-
-After verifying that it is indeed a workspace, we now need to make it an
-actual package in @file{gnu/packages/rust-sources.scm}, referencing it in the
-crate-source definition (see @ref{Common Workflow for Rust Packaging} for more
-details).
-
-@quotation Note
-You can verify if a crate is a workspace by cloning the crate repository (in
-this case @code{https://github.com/Smithay/smithay.git}), checking out the
-specific revision (in this case @command{git checkout d743e1a}), and looking
-for @code{[workspace]} in its main @file{Cargo.toml} file. If it does not have a
-TOML @code{[workspace]} section, then it is not a workspace.
-@end quotation
-
-After defining the separate source package for the workspace in
-@file{gnu/packages/rust-sources.scm} (see @ref{Common Workflow for Rust
-Packaging} for more details on how to do this), the crate definition for
-@code{rust-smithay-0.7.0.d743e1a} would then become the following (notice we
-also remove the TODO line):
-
-@lisp
-(define rust-smithay-0.7.0.d743e1a package:rust-smithay-0.7.0.d743e1a)
-@end lisp
-
-If @code{rust-smithay-0.7.0.d743e1a} was not a workspace, we would simply remove
-the TODO line and move on.
-
-We then try to build the package with @command{guix build niri}, and make sure
-whether it builds successfully, which it does.
-
-As a good practice, we can further check the output of the
-@code{check-for-pregenerated-files} phase to ensure there are no extraneous
-pregenerated files inside the crates. If there are any, it is important to
-snippet them out, like these:
-
-@lisp
-(define rust-winapi-x86-64-pc-windows-gnu-0.4.0
-  (crate-source "winapi-x86_64-pc-windows-gnu" "0.4.0"
-                "0gqq64czqb64kskjryj8isp62m2sgvx25yyj3kpc2myh85w24bki"
-                #:snippet '(delete-file-recursively "lib")))
-
-(define rust-flate2-1.1.4
-  (crate-source "flate2" "1.1.4"
-                "1a8a3pk2r2dxays4ikc47ygydhpd1dcxlgqdi3r9kiiq9rb4wnnw"
-                #:snippet '(for-each delete-file-recursively '("examples" "tests"))))
-
-(define rust-flo-curves-0.3.1
-  (crate-source "flo_curves" "0.3.1"
-                "16x293dp8825jh465kgms4yyvl4960j26gh37h3skflq9zxpy8hw"
-                #:snippet '(for-each delete-file '("logo-small.png" "logo.png"))))
-
-(define rust-interception-sys-0.1.3
-  (crate-source "interception-sys" "0.1.3"
-                "1lgwbml7gzq5a5rriy708w68gx6yiw9cdg7xy2c5vsrrck7pbs5b"
-                #:snippet '(for-each delete-file (find-files "." "\\.(dll|lib)$"))))
-@end lisp
-
-@node Common Workflow for Resolving Merge Conflicts on Existing Pull Requests
-@subsubsection Common Workflow for Resolving Merge Conflicts on Existing Pull Requests
-
-Whenever a Rust package change is merged into our target branch from a different
-Pull Request, we often encounter many merge conflicts in @code{(gnu packages
-rust-crates)} when rebasing the Pull Request on top of the target branch. Since
-we should avoid modifying the rust-crates file manually (e.g. using the git
-interface to solve merge conflicts), it is recommended (and often much faster)
-to drop all changes to @code{(gnu packages rust-crates)} and run the lockfile
-importer once again, manually adding back all the manual changes.
-
-This workflow describes one of many ways to do the described procedure.
-
-In this example we'll update the @code{codeberg-cli} package, which has produced
-some merge conflicts in @file{gnu/packages/rust-crates.scm} when we tried a git
-pull rebase.
-
-Before starting, make sure we're not in a rebase environment, by aborting the
-rebase we tried previously (the one which created the merge conflicts by git
-pulling):
-
-@example
-$ git rebase --abort
-@end example
-
-@cindex git rebase --interactive
-@cindex interactive rebase
-To begin, we interactively rebase our PR branch by marking as
-@code{edit} the commit we want to edit, which is the one containing the
-@file{gnu/packages/rust-crates.scm} changes:
-
-@example
-# Change 1 to the number of relevant commits
-$ git rebase -i HEAD~1
-@end example
-
-In our example, we would mark the @code{codeberg-cli} commit like so:
-
-@example
-edit 6ef4f1ad043 # gnu: codeberg-cli: Update to 0.5.4.
-@end example
-
-After that, we'll be in rebase mode, where we can restore the changes made to
-@file{gnu/packages/rust-crates.scm}:
-
-@quotation Note
-Notice that we will lose all manual changes we have previously made to
-@file{gnu/packages/rust-crates.scm} (e.g. snippets, deleting TODO comments,
-if there were any). We'll need to manually add them back after we run the guix
-lockfile importer once again, so make sure you have them saved somewhere, for
-example in your PR link under the @code{Files changed} tab.
-@end quotation
-
-@example
-$ git restore --source=HEAD~ gnu/packages/rust-crates.scm
-@end example
-
-Having restored the file, we can stage the changes, commit, finish the rebase
-and pull rebase from the target branch:
-
-@example
-$ git add gnu/packages/rust-crates.scm
-$ git commit --amend --no-edit
-$ git rebase --continue
-$ git pull <remote> <target branch>
-@end example
-
-We then proceed to run the guix lockfile importer:
-
-@quotation Note
-Remember to checkout the correct tag you're packaging in the package repository
-checkout. Don't forget to run @code{cargo generate-lockfile} before running
-the lockfile importer, see @ref{Common Workflow for Rust Packaging} for more
-detailed steps on what to do before running the guix lockfile importer.
-@end quotation
-
-@example
-$ guix import --insert=gnu/packages/rust-crates.scm \
-      crate --lockfile=/path/to/Cargo.lock codeberg-cli
-@end example
-
-Now is the time we manually add back the snippets and remove the relevant TODOs
-we have already checked (if there are any).
-
-After running the lockfile importer and checking if there are any changes to
-manually add back, we can finally:
-
-@example
-$ git add gnu/packages/rust-crates.scm
-# Our target commit is the last one:
-$ git commit --amend --no-edit
-@end example
-
-We now have a non-conflicting tree, from which we can now update our PR with.
 
 @c *********************************************************************
 @node System Configuration
@@ -3274,8 +2933,8 @@ your Linode Summary section.) Now you can run the "install guix from
 
 @example
 sudo apt-get install gpg
-wget https://codeberg.org/efraim.gpg -qO - | gpg --import -
-wget https://guix.gnu.org/guix-install.sh
+wget https://sv.gnu.org/people/viewgpg.php?user_id=15145 -qO - | gpg --import -
+wget https://git.savannah.gnu.org/cgit/guix.git/plain/etc/guix-install.sh
 chmod +x guix-install.sh
 ./guix-install.sh
 guix pull
@@ -3454,7 +3113,7 @@ Now you can run the "install guix from @pxref{Binary Installation,,,
 guix, GNU Guix}" steps:
 
 @example
-wget https://guix.gnu.org/guix-install.sh
+wget https://git.savannah.gnu.org/cgit/guix.git/plain/etc/guix-install.sh
 chmod +x guix-install.sh
 ./guix-install.sh
 guix pull
@@ -4509,7 +4168,7 @@ network.  Assuming your interface is named @samp{enp2s0}, the following
 command can be used to do so:
 
 @example sh
-# nmcli con add type bridge-slave autoconnect yes ifname enp2s0 master br0
+# nmcli con add type bridge-slave ifname enp2s0 master br0
 @end example
 
 @quotation Important
@@ -4545,8 +4204,8 @@ bridge interface, as the default is to deny all.  Add the following to
 your list of services to do so:
 
 @example lisp
-(extra-special-file "/etc/qemu/bridge.conf"
-                    (plain-file "bridge.conf" "allow br0\n"))
+(extra-special-file "/etc/qemu/host.conf"
+                    (plain-file "host.conf" "allow br0\n"))
 @end example
 
 @subsection Invoking QEMU with the right command line options
@@ -4564,7 +4223,7 @@ machine making use of the bridge would cause networking issues.
 @example sh
 $ qemu-system-x86_64 [...] \
     -device virtio-net-pci,netdev=user0,mac=XX:XX:XX:XX:XX:XX \
-    -netdev bridge,helper=/run/privileged/bin/qemu-bridge-helper,id=user0,br=br0 \
+    -netdev bridge,id=user0,br=br0 \
     [...]
 @end example
 

doc/local.mk

@@ -6,7 +6,7 @@
 # Copyright © 2016, 2018 Mathieu Lirzin <mthl@gnu.org>
 # Copyright © 2018, 2021 Julien Lepiller <julien@lepiller.eu>
 # Copyright © 2019 Timothy Sample <samplet@ngyro.com>
-# Copyright © 2024, 2026 Janneke Nieuwenhuizen <janneke@gnu.org>
+# Copyright © 2024 Janneke Nieuwenhuizen <janneke@gnu.org>
 # Copyright © 2024 gemmaro <gemmaro.dev@gmail.com>
 #
 # This file is part of GNU Guix.
@@ -30,7 +30,7 @@ COOKBOOK_LANGUAGES = de es fr it ko pt_BR ru sk sv ta zh_CN
 
 # Arg1: A list of languages codes.
 # Arg2: The file name stem.
-lang_to_texinfo = $(foreach lang,$(1),$(srcdir)/%D%/$(2).$(lang).texi)
+lang_to_texinfo = $(foreach lang,$(1),%D%/$(2).$(lang).texi)
 
 # Automake does not understand GNU Make non-standard extensions,
 # unfortunately, so we cannot use the above patsubst-based function here.
@@ -104,7 +104,7 @@ MAINTAINERCLEANFILES  = $(OS_CONFIG_EXAMPLES_TEXI) $(TRANSLATED_INFO)
 # reference is not translated, which means it references a section that does not
 # exist.
 define xref_command
-$(top_builddir)/pre-inst-env $(GUILE) --no-auto-compile	\
+$(top_srcdir)/pre-inst-env $(GUILE) --no-auto-compile	\
   "$(top_srcdir)/build-aux/convert-xref.scm"		\
   $@.tmp $<
 endef
@@ -116,21 +116,21 @@ dummy_pot = $(shell mktemp --suffix=.pot)
 $(srcdir)/%D%/guix.%.texi: po/doc/guix-manual.%.po $(srcdir)/%D%/contributing.%.texi guix/build/po.go
 	-$(AM_V_PO4A)$(PO4A) --no-update			\
 	    --variable localized="$@.tmp"			\
-	    --variable master="$(srcdir)/%D%/guix.texi"		\
+	    --variable master="%D%/guix.texi"			\
 	    --variable po="$<"					\
 	    --variable pot=$(dummy_pot)			\
-	    $(srcdir)/po/doc/po4a.cfg
+	    po/doc/po4a.cfg
 	-sed -i "s|guix\.info|$$(basename "$@" | sed 's|texi$$|info|')|" "$@.tmp"
 	-$(AM_V_POXREF)LC_ALL=en_US.UTF-8 $(xref_command)
 	-mv "$@.tmp" "$@"
 
 $(srcdir)/%D%/guix-cookbook.%.texi: po/doc/guix-cookbook.%.po guix/build/po.go
-	-$(AM_V_PO4A)$(PO4A) --no-update				\
-	    --variable localized="$@.tmp"				\
-	    --variable master="$(srcdir)/%D%/guix-cookbook.texi"	\
-	    --variable po="$<"						\
+	-$(AM_V_PO4A)$(PO4A) --no-update			\
+	    --variable localized="$@.tmp"			\
+	    --variable master="%D%/guix-cookbook.texi"		\
+	    --variable po="$<"					\
 	    --variable pot=$(dummy_pot)			\
-	    $(srcdir)/po/doc/po4a.cfg
+	    po/doc/po4a.cfg
 	-sed -i "s|guix-cookbook\.info|$$(basename "$@" | sed 's|texi$$|info|')|" "$@.tmp"
 	-$(AM_V_POXREF)LC_ALL=en_US.UTF-8 $(xref_command)
 	-mv "$@.tmp" "$@"
@@ -138,16 +138,16 @@ $(srcdir)/%D%/guix-cookbook.%.texi: po/doc/guix-cookbook.%.po guix/build/po.go
 $(srcdir)/%D%/contributing.%.texi: po/doc/guix-manual.%.po guix/build/po.go
 	-$(AM_V_PO4A)$(PO4A) --no-update			\
 	    --variable localized="$@.tmp"			\
-	    --variable master="$(srcdir)/%D%/contributing.texi"		\
+	    --variable master="%D%/contributing.texi"		\
 	    --variable po="$<"					\
 	    --variable pot=$(dummy_pot)			\
-	    $(srcdir)/po/doc/po4a.cfg
+	    po/doc/po4a.cfg
 	-$(AM_V_POXREF)LC_ALL=en_US.UTF-8 $(xref_command)
 	-mv "$@.tmp" "$@"
 
 %D%/os-config-%.texi: gnu/system/examples/%.tmpl
 	$(AM_V_GEN)$(MKDIR_P) "`dirname $@`";	\
-	sed -e s,@,@@,g "$<" > "$@"
+	cp "$<" "$@"
 
 infoimagedir = $(infodir)/images
 dist_infoimage_DATA =				\

etc/manifests/cross-compile.scm

@@ -1,6 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2020-2022, 2024 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2020, 2026 Janneke Nieuwenhuizen <janneke@gnu.org>
+;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2023 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2025 Efraim Flashner <efraim@flashner.co.il>
 ;;;
@@ -61,7 +61,7 @@ TARGET."
   ;; from the other package sets.
   (fold delete %base-packages
         (append (map specification->package
-                     '("kbd" "iproute2" "iw" "wireless-tools"))
+                     '("e2fsprogs" "kbd" "iproute2" "iw" "wireless-tools"))
                 %base-packages-linux)))
 
 (define %system-packages

etc/teams.scm

@@ -16,7 +16,6 @@ exec $pre_inst_env_maybe guix repl -- "$0" "$@"
 ;;; Copyright © 2025 Cayetano Santos <csantosb@inventati.org>
 ;;; Copyright © 2025-2026 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2025 jgart <jgart@dismail.de>
-;;; Copyright © 2026 Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -514,7 +513,6 @@ of Rebar and Mix build systems and Hex.pm importer."
                       "gnu/packages/autogen.scm"
                       "gnu/packages/autotools.scm"
                       "gnu/packages/bison.scm"
-                      "gnu/packages/compiler-tools.scm"
                       "gnu/packages/m4.scm"
                       "gnu/packages/oyacc.scm"
                       "gnu/packages/re2c.scm")))
@@ -567,7 +565,6 @@ challenges"))
               "guix/docker.scm"
               "guix/download.scm"
               "guix/elf.scm"
-              "guix/fossil-download.scm"
               "guix/ftp-client.scm"
               "guix/gexp.scm"
               "guix/git-authenticate.scm"
@@ -662,12 +659,6 @@ challenges"))
                       "gnu/system/examples/lightweight-desktop.tmpl"
                       "gnu/system/examples/desktop.tmpl")))
 
-(define-team dotnet
-  (team 'dotnet
-        #:name ".NET"
-        #:description ".NET programming environment."
-        #:scope (list "gnu/packages/dotnet.scm")))
-
 (define-team electronics
   (team 'electronics
         #:name "Electronics team"
@@ -698,7 +689,6 @@ ecosystem."
   (team 'embedded
         #:name "Embedded"
         #:scope (list "gnu/packages/bootloaders.scm"
-                      "gnu/packages/coreboot.scm"
                       "gnu/packages/firmware.scm")))
 
 (define-team games
@@ -796,8 +786,7 @@ the haskell-build-system."
   (team 'hpc
         #:name "High-performance computing team"
         #:description "High-performance computing (HPC) related packages."
-        #:scope (list "gnu/packages/fabric-management.scm"
-                      "gnu/packages/mpi.scm"
+        #:scope (list "gnu/packages/mpi.scm"
                       "gnu/packages/oneapi.scm"
                       "gnu/packages/opencl.scm"
                       "gnu/packages/parallel.scm"
@@ -835,7 +824,6 @@ and the maven-build-system."
               (make-regexp* "^gnu/packages/java(-.+|)\\.scm$")
               ;; Match maven.scm and maven-*.scm
               (make-regexp* "^gnu/packages/maven(-.+|)\\.scm$")
-              "gnu/packages/netbeans.scm"
               "guix/build/ant-build-system.scm"
               "guix/build/clojure-build-system.scm"
               "guix/build/clojure-utils.scm"
@@ -852,8 +840,7 @@ and the maven-build-system."
         #:name "JavaScript team"
         #:description
         "JavaScript/Node.js packages, the node build system."
-        #:scope (list "gnu/packages/javascript.scm"
-                      "gnu/packages/node-xyz.scm"
+        #:scope (list "gnu/packages/node-xyz.scm"
                       "gnu/packages/node.scm"
                       "guix/build-system/node.scm"
                       "guix/build/node-build-system.scm"
@@ -954,7 +941,6 @@ importer, and the ocaml-build-system."
         #:scope
         (list "gnu/packages/ocaml.scm"
               "gnu/packages/coq.scm"
-              "gnu/packages/rocq.scm"
               "guix/build/ocaml-build-system.scm"
               "guix/build/dune-build-system.scm"
               "guix/build-system/ocaml.scm"
@@ -1227,7 +1213,6 @@ the \"texlive\" importer."
                       "gnu/tests/version-control.scm"
                       "guix/build/bzr.scm"
                       "guix/build/cvs.scm"
-                      "guix/build/fossil.scm"
                       "guix/build/git.scm"
                       "guix/build/hg.scm"
                       "guix/build/svn.scm")))
@@ -1248,11 +1233,6 @@ the \"texlive\" importer."
                       "guix/build-system/zig.scm")))
 
 
-(define-member (person "Anderson Torres"
-                       "anderson.torres.8519@gmail.com"
-                       "AndersonTorres")
-  community translations)
-
 (define-member (person "Eric Bavier"
                        "bavier@posteo.net"
                        "bavier")
@@ -1263,11 +1243,6 @@ the \"texlive\" importer."
                        "jonsger")
   mozilla)
 
-(define-member (person "Denis Carikli"
-                       "GNUtoo@cyberdimension.org"
-                       "GNUtoo")
-  embedded)
-
 (define-member (person "Ludovic Courtès"
                        "ludo@gnu.org"
                        "civodul")
@@ -1556,7 +1531,7 @@ the \"texlive\" importer."
 (define-member (person "Danny Milosavljevic"
                        "dannym@friendly-machines.com"
                        "daym")
-  bootstrap dotnet hpc python rust science)
+  bootstrap hpc python rust science)
 
 (define-member (person "Andy Tai"
                        "atai@atai.org"
@@ -1651,7 +1626,7 @@ the \"texlive\" importer."
 (define-member (person "Thanos Apollo"
                        "public@thanosapollo.org"
                        "thanosapollo")
-  vcs emacs)
+  vcs)
 
 (define-member (person "Ashish SHUKLA"
                        "ashish.is@lostca.se"
@@ -1673,26 +1648,6 @@ the \"texlive\" importer."
                        "tok")
   electronics)
 
-(define-member (person "gemmaro"
-                       "gemmaro.dev@gmail.com"
-                       "gemmaro")
-  ruby)
-
-(define-member (person "bdunahu"
-                       "bdunahu@operationnull.com"
-                       "bdunahu")
-  games)
-
-(define-member (person "Nomike"
-                       "nomike@nomike.com"
-                       "nomike")
-  dotnet)
-
-(define-member (person "Fabio Natali"
-                       "me@fabionatali.com"
-                       "fnat")
-  emacs)
-
 
 (define (find-team name)
   (or (hash-ref %teams (string->symbol name))

etc/teams/hpc/mpi-manifest.scm

@@ -1,44 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2026 Ludovic Courtès <ludo@gnu.org>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
-
-;; This manifest lists all MPI-related packages: useful for 'guix refresh',
-;; 'guix build', etc.
-
-(use-modules (guix)
-             (gnu packages fabric-management)
-             (gnu packages linux)
-             (gnu packages mpi)
-             (gnu packages parallel))
-
-;; The packages below are what constitutes the MPI stack: helper libraries,
-;; interconnect drivers, and MPI implementations.
-(packages->manifest
- (list cassini-headers
-       cxi-driver
-       hwloc
-       libcxi
-       libfabric
-       mpich
-       openmpi-5
-       openpmix
-       opensm
-       prrte
-       psm
-       psm2
-       rdma-core
-       ucx))

etc/teams/rust/audit-rust-crates

@@ -1,6 +1,6 @@
 #!/usr/bin/env -S gawk -f
 # GNU Guix --- Functional package management for GNU
-# Copyright © 2025, 2026 Efraim Flashner <efraim@flashner.co.il>
+# Copyright © 2025 Efraim Flashner <efraim@flashner.co.il>
 #
 # This file is part of GNU Guix.
 #
@@ -21,22 +21,20 @@
 # ./etc/teams/rust/audit-rust-crates ./path/to/file.scm
 # Prints the output of cargo-audit to the shell.
 
+# Make sure we have cargo-audit in our PATH
 BEGIN {
-    "which cargo-audit" | getline cargoAudit
-    close("which cargo-audit")
-    cargoAudit = cargoAudit " audit --file -"
-
+    if (system("which cargo-audit 1> /dev/null"))
+        exit 1;
     # Parse a record at a time.
     RS = "\n\n"
+    cargoAudit = "cargo-audit audit --file -"
 }
 
-# Check the crate-source origin-only inputs, like in rust-crates.scm
+# Check the crate-source origin-only inputs
 /crate-source/ {
     for(i=3; i <= NF-2; i++) {
         if($i == "(crate-source") {
-            crateName = $(i+1)
-            crateVersion = $(i+2)
-            cargoLock = cargoLock "[[package]]\nname = " crateName "\nversion = " crateVersion "\n"
+            cargoLock = cargoLock "[[package]]\nname = " $(i+1) "\nversion = " $(i+2) "\n"
             next
         }
     }
@@ -46,64 +44,27 @@ BEGIN {
 /crate-uri/ {
     for(i=3; i <= NF; i++) {
         if($i == "(version")
-            crateVersion = $(i+1)
+           crateVersion = $(i+1)
         if($i == "(crate-uri")
-            crateName = $(i+1)
+           crateName = $(i+1)
     }
     gsub(/)/, "", crateVersion)
     cargoLock = cargoLock "[[package]]\nname = " crateName "\nversion = " crateVersion "\n"
-    next
 }
 
-# Parse the crates created from packages using 'cargo package'
-/package:rust/ {
-    pkg = $2
-    split(pkg, name_version, "-")
-    crateVersion = name_version[length(name_version)]
-    crateName = substr(pkg, 6, (length(pkg) - length(crateVersion) - 6))
-    split(crateVersion, versionDots, ".")
-    if(crateVersion && (crateVersion != "(git-version") && (length(versionDots) == 3) && crateName) {
-        cargoLock = cargoLock "[[package]]\nname = \"" crateName "\"\nversion = \"" crateVersion "\"\n"
-    } else {
-        untested++
-        #print("Unable to test " $0)
-    }
-    next
-}
+# The xxxx-cargo-input variables have a set style
+# TODO: Replace the last dash between the name and the version with a space!
+# This doesn't take into account swapping between "-" and "_" so we skip it.
+#( $2 ~ /-cargo-inputs/ ) {
+#    sub(/-cargo-inputs/, "", $2)
+#    gsub(/)/, "", $0)
+#    gsub(/rust-/, "", $0)
+#    #gensub(/([[:alpha:]])-([[:digit:]]+)/, "\\1 \\2", "g", $i)
+#    print "[[package]]\nname = \"" $2 "\"\nversion = \"1.0.0\"\ndependencies = ["
+#    for (i = 4; i <= NF; i++) {
+#        print "\"" $i "\","
+#    }
+#    print "]"
+#}
 
-# We make an attempt to create the crate name from the package name otherwise
-/git-reference/ {
-    for(i=3; i <= NF; i++) {
-        if($i == "(version")
-            crateVersion = $(i+1)
-        if($i == "(name")
-            crateName = $(i+1)
-        if($i == "(git-file-name") {
-            crateName = $(i+1)
-            crateVersion = $(i+2)
-        }
-    }
-    gsub(/)/, "", crateVersion)
-    gsub(/)/, "", crateName)
-    sub(/rust-/, "", crateName)
-    # The crate version MUST be major.minor.patch
-    split(crateVersion, versionParts, ".")
-    if(crateVersion && (crateVersion != "(git-version") && (length(versionParts) == 3) && crateName) {
-        cargoLock = cargoLock "[[package]]\nname = " crateName "\nversion = " crateVersion "\n"
-    } else {
-        untested++
-        #print("Unable to test " $0)
-    }
-    next
-}
-
-# Note those which we were unable to parse
-/define rust/ {
-    if($3 == "#f)")
-        next
-    print("Unable to parse " $0)
-    }
-
-{ untested++ }
-
-END { print("Number of crates untested: " untested); print cargoLock | cargoAudit }
+END { print cargoLock | cargoAudit }

etc/teams/tex/tex-manifest.scm

@@ -26,6 +26,7 @@
 
 (define %sundry-texlive-packages
   (list bibtool
+        dvisvgm
         rubber
         texmaker
         texstudio

gnu/bootloader/grub.scm

@@ -404,10 +404,7 @@ when booting a root file system on a Btrfs subvolume."
               (initrd (normalize-file (menu-entry-initrd entry)
                                       device-mount-point
                                       store-directory-prefix))
-              (extra-initrd (bootloader-configuration-extra-initrd config))
-              (luks-script-initrd
-               (and (pair? store-crypto-devices)
-                    "newc:etc/luks_script:(proc)/luks_script")))
+              (extra-initrd (bootloader-configuration-extra-initrd config)))
           ;; Here DEVICE is the store and DEVICE-MOUNT-POINT is its mount point.
           ;; Use the right file names for LINUX and INITRD in case
           ;; DEVICE-MOUNT-POINT is not "/", meaning that the store is on a
@@ -415,20 +412,14 @@ when booting a root file system on a Btrfs subvolume."
 
           ;; When STORE-DIRECTORY-PREFIX is defined, prepend it the linux and
           ;; initrd paths, to allow booting from a Btrfs subvolume.
-
-          ;; When the store is on an encrypted device, inject GRUB's
-          ;; (proc)/luks_script into the initrd as /etc/luks_script so the
-          ;; initrd can use the already-decrypted master key to open LUKS
-          ;; volumes without prompting for the password a second time.
           #~(format port "menuentry ~s {
   ~a
   linux ~a ~a
-  initrd ~a ~a ~a
+  initrd ~a ~a
 }~%"
                     #$label
                     #$(grub-root-search device linux)
                     #$linux (string-join (list #$@arguments))
-                    (or #$luks-script-initrd "")
                     (or #$extra-initrd "")
                     #$initrd)))
        (multiboot-kernel
@@ -446,11 +437,9 @@ when booting a root file system on a Btrfs subvolume."
                (modules (menu-entry-multiboot-modules entry)))
           #~(format port "
 menuentry ~s {
-  ~a
   multiboot ~a root=~a~a~a
 }~%"
                     #$label
-                    #$(grub-root-search device kernel)
                     #$kernel
                     #$(device-name->hurd-device-name device-name #:disk disk)
                     (string-join (list #$@arguments) " " 'prefix)
@@ -475,7 +464,7 @@ menuentry ~s {
           ;; Other type of devices aren't implemented.
           #~()))
     (let ((devices (map crypto-device->cryptomount store-crypto-devices))
-          (modules #~(format port "insmod procfs~%insmod luks~%insmod luks2~%")))
+          (modules #~(format port "insmod luks~%insmod luks2~%")))
       (if (null? devices)
           devices
           (cons modules devices))))

gnu/build/file-systems.scm

@@ -1226,12 +1226,10 @@ file name or an nfs-root containing ':/')."
 
   (match spec
     ((? string?)
-     (if (string-match "^/dev/[a-zA-Z0-9]+$" spec)
+     (if (string-prefix? "/dev/" spec)
          ;; Nothing to do, but wait until SPEC shows up.
          (resolve device-exists? spec identity)
-         ;; Do not resolve NFS / CIFS / tmpfs devices
-         ;; or bcachefs multi-device specifications.
-         spec))
+         spec)) ; do not resolve NFS / CIFS / tmpfs devices
     ((? file-system-label?)
      ;; Resolve the label.
      (resolve find-partition-by-label

gnu/build/hurd-boot.scm

@@ -74,37 +74,16 @@ Return the value associated with OPTION, or #f on failure."
                 (loop (absolute target) (+ depth 1))
                 file))))))
 
-(define* (make-hurd-device-nodes #:key (root "/") (hurd "/hurd"))
+(define* (make-hurd-device-nodes #:optional (root "/"))
   "Make some of the nodes needed on GNU/Hurd."
   (define (scope dir)
-    (in-vicinity root dir))
-
-  (define scope-set-translator
-    (match-lambda
-      ((file-name command)
-       (scope-set-translator (list file-name command #o600)))
-      ((file-name command mode)
-       (let ((mount-point (scope file-name)))
-         (set-translator mount-point command mode)))))
+    (string-append root (if (string-suffix? "/" root) "" "/") dir))
 
   (mkdir-p (scope "dev"))
-  ;; XXX: We must have `/dev/console` otherwise `console-run` tries to
-  ;; create it while the file-system is still read-only.
-  (for-each (lambda (file)
-              (call-with-output-file (scope file)
-                (lambda (port)
-                  (display file port)   ;avoid hard-linking
-                  (chmod port #o666))))
-            '("dev/console"
-              ;; XXX What about vcs?
-              ;; Don't create /dev/null etc just yet; the store
-              ;; messes-up the permission bits.
-              ;; "dev/null"
-              ;; "dev/zero"
-              ;; "dev/full"
-              ;; "dev/random"
-              ;; "dev/urandom"
-              ))
+  ;; Don't create /dev/null etc just yet; the store
+  ;; messes-up the permission bits.
+  ;; Don't create /dev/console, /dev/vcs, etc.: they are created by
+  ;; console-run on first boot.
 
   (mkdir-p (scope "servers"))
   (for-each (lambda (file)
@@ -122,47 +101,22 @@ Return the value associated with OPTION, or #f on failure."
               "suspend"))
 
   (mkdir-p (scope "servers/socket"))
-  (mkdir-p (scope "servers/bus/pci"))
 
-  ;; Set the 'gnu.translator' extended attribute for passive translator
-  ;; settings for pipes (servers/socet/1) and mount information (proc/mounts).
-  ;; Pipes are needed for guile-3.0.11 to startup, this enables moving
-  ;; "runsystem" to guile.
-  ;; XXX TODO: Set more passive xattr translators?
-  (define servers
-    `(
-      ;; ("servers/bus/pci"         ("/hurd/pci-arbiter"))
-      ;; ("servers/crash-dump-core" ("/hurd/crash" "--dump-core"))
-      ;; ("servers/crash-kill"      ("/hurd/crash" "--kill"))
-      ;; ("servers/crash-suspend"   ("/hurd/crash" "--suspend"))
-      ;; ("servers/password"        ("/hurd/password"))
-      ;; PIPE -- for running runsystem as Guile
-      ("servers/socket/1"        (,(in-vicinity hurd "pflocal")))
-      ;; /servers/socket/2 and /26 are created by 'static-networking-service'.
-      ;; XXX: Spawn pfinet without arguments on these nodes so that a DHCP
-      ;; client has someone to talk to?
-      ("proc"                    (,(in-vicinity hurd "procfs") "--stat-mode=444"))))
+  ;; Don't create /servers/socket/1 & co: runsystem does that on first boot.
 
-  (for-each scope-set-translator servers)
-
-  (define devices
-    '())
-  (for-each scope-set-translator devices))
+  ;; TODO: Set the 'gnu.translator' extended attribute for passive translator
+  ;; settings?
+  (mkdir-p (scope "servers/bus/pci")))
 
 (define (passive-translator-xattr? file-name)
   "Return true if FILE-NAME has an extended @code{gnu.translator} attribute
-set.
-
-Note that reading \"gnu.*\" xattrs on Linux only work with ext4; for tmpfs,
-used during image creation, linux-7.0 with linux-shmem-hurd-xattr patch is
-needed."
-  (and (file-exists? file-name)
-       (catch 'system-error
-         (lambda _ (not (string-null? (getxattr file-name "gnu.translator"))))
-         (lambda args
-           (if (= ENODATA (system-error-errno args))
-               #f
-               (apply throw args))))))
+set."
+  (catch 'system-error
+    (lambda _ (not (string-null? (getxattr file-name "gnu.translator"))))
+    (lambda args
+      (if (= ENODATA (system-error-errno args))
+          #f
+          (apply throw args)))))
 
 (define (passive-translator-installed? file-name)
   "Return true if @file{showtrans} finds a translator installed on FILE-NAME."
@@ -182,11 +136,7 @@ needed."
       (passive-translator-installed? file-name)))
 
 (define* (set-translator file-name command #:optional (mode #o600))
-  "Setup translator COMMAND on FILE-NAME.
-
-Note that setting \"gnu.*\" xattrs on Linux only work with ext4; for tmpfs,
-used during image creation, linux-7.0 with linux-shmem-hurd-xattr patch is
-needed."
+  "Setup translator COMMAND on FILE-NAME."
   (unless (translated? file-name)
     (let ((dir (dirname file-name)))
       (unless (directory-exists? dir)
@@ -218,7 +168,7 @@ needed."
   "Make some of the device nodes needed on GNU/Hurd."
 
   (define (scope dir)
-    (in-vicinity root dir))
+    (string-append root (if (string-suffix? "/" root) "" "/") dir))
 
   (define scope-set-translator
     (match-lambda
@@ -230,19 +180,8 @@ needed."
 
   (define (mkdir* dir)
     (let ((dir (scope dir)))
-      (unless (file-exists? dir)
-        (mkdir-p dir))))
-
-  ;; (define random-seed "/var/lib/random-seed")
-
-  ;; ;; Create seed file to avoid
-  ;; ;; /gnu/store/...-hurd-x.y.z/hurd/random: Warning: Failed to read random seed file /var/lib/random-seed: No such file or directory
-  ;; (let ((file (scope random-seed)))
-  ;;   (mkdir-p (dirname file))
-  ;;   (call-with-output-file file
-  ;;     (lambda (port)
-  ;;       (display (iota 1000) port)
-  ;;       (chmod port #o600))))
+     (unless (file-exists? dir)
+       (mkdir-p dir))))
 
   (define servers
     '(("servers/bus/pci"         ("/hurd/pci-arbiter"))
@@ -259,14 +198,8 @@ needed."
   (define devices
     `(("dev/full"    ("/hurd/null"     "--full")            #o666)
       ("dev/null"    ("/hurd/null")                         #o666)
-      ;; The random translators, especially /dev/urandom, need to be non-passive
-      ;; When they exist in the file-system and reference /var/lib/random-seed
-      ;; while / is read-only. console-run will hang.
-      ;; ("dev/random"  ("/hurd/random"   "--seed-file" ,random-seed)
-      ;;                                                       #o644)
-      ;; ("dev/urandom"  ("/hurd/random"   "--seed-file" ,random-seed
-      ;;                 "--fast")
-      ;;  #o644)
+      ("dev/random"  ("/hurd/random"   "--seed-file" "/var/lib/random-seed")
+                                                            #o644)
       ("dev/zero"    ("/hurd/storeio"  "--store-type=zero") #o666)
 
       ("dev/console" ("/hurd/term"     "/dev/console" "device" "console"))
@@ -351,6 +284,7 @@ needed."
     (rename-file (scope "dev/console") (scope "dev/console-")))
   (for-each scope-set-translator devices)
 
+  (false-if-EEXIST (symlink "/dev/random" (scope "dev/urandom")))
   (false-if-EEXIST (symlink "/dev/fd/0" (scope "dev/stdin")))
   (false-if-EEXIST (symlink "/dev/fd/1" (scope "dev/stdout")))
   (false-if-EEXIST (symlink "/dev/fd/2" (scope "dev/stderr")))

gnu/build/image.scm

@@ -322,7 +322,7 @@ register-closure."
 
   ;; Populate /dev.
   (when make-device-nodes
-    (make-device-nodes #:root root))
+    (make-device-nodes root))
 
   (when register-closures?
     (unless copy-closures?

gnu/build/linux-container.scm

@@ -445,14 +445,10 @@ load path must be adjusted as needed."
           ;; Behave like an init process: create a sub-process that calls
           ;; THUNK, and wait for child processes.  Furthermore, forward
           ;; RELAYED-SIGNALS to the child process.
-          ;; We presently use `safe-clone` here due to a bug in the interaction
-          ;; between Guix and `primitive-fork` in Guile 3.0.11:
-          ;; https://codeberg.org/guix/guix/issues/7690#issuecomment-12744123
-          (safe-clone
-            SIGCHLD
-            (lambda ()
+          (match (primitive-fork)
+            (0
              (call-with-clean-exit thunk))
-            (lambda (pid)
+            (pid
              (install-signal-handlers pid)
              (let loop ()
                (match (wait-child-process)

gnu/home/services/gnupg.scm

@@ -81,10 +81,7 @@ entry will be expired even if it has been accessed recently.")
    "Maximum time a cache entry for SSH keys is valid, in seconds.")
   (extra-content
    (raw-configuration-string "")
-   "Raw content to add to the end of @file{~/.gnupg/gpg-agent.conf}.")
-  (shepherd-requirement
-   (list-of-symbols '())
-   "List of services that should be started before this service."))
+   "Raw content to add to the end of @file{~/.gnupg/gpg-agent.conf}."))
 
 (define (home-gpg-agent-configuration-file config)
   "Return the @file{gpg-agent.conf} file for @var{config}."
@@ -107,7 +104,7 @@ entry will be expired even if it has been accessed recently.")
 (define (home-gpg-agent-shepherd-services config)
   "Return the possibly-empty list of Shepherd services for @var{config}."
   (match-record config <home-gpg-agent-configuration>
-    (gnupg ssh-support? shepherd-requirement)
+    (gnupg ssh-support?)
     ;; 'gpg-agent' is started on demand by GnuPG's programs, but it has to be
     ;; started explicitly when OpenSSH support is enabled (info "(gnupg) Agent
     ;; Options").
@@ -122,19 +119,15 @@ entry will be expired even if it has been accessed recently.")
                              #:socket-directory-permissions #o700))))
           (list (shepherd-service
                  (provision '(gpg-agent ssh-agent))
-                 (requirement shepherd-requirement)
                  (modules '((shepherd support)))  ;for '%user-runtime-dir'
-                 (start
-                  #~(make-systemd-constructor
-                     (list #$(file-append gnupg "/bin/gpg-agent")
-                           "--supervised" "--enable-ssh-support")
-                     (list #$(endpoint "ssh" "S.gpg-agent.ssh")
-                           #$(endpoint "browser" "S.gpg-agent.browser")
-                           #$(endpoint "extra" "S.gpg-agent.extra")
-                           ;; #$(endpoint "scdaemon" "S.scdaemon")
-                           #$(endpoint "std" "S.gpg-agent"))
-                     ;; Inherit graphical session environment.
-                     #:environment-variables (environ)))
+                 (start #~(make-systemd-constructor
+                           (list #$(file-append gnupg "/bin/gpg-agent")
+                                 "--supervised" "--enable-ssh-support")
+                           (list #$(endpoint "ssh" "S.gpg-agent.ssh")
+                                 #$(endpoint "browser" "S.gpg-agent.browser")
+                                 #$(endpoint "extra" "S.gpg-agent.extra")
+                                 ;; #$(endpoint "scdaemon" "S.scdaemon")
+                                 #$(endpoint "std" "S.gpg-agent"))))
                  (stop #~(make-systemd-destructor))
                  (documentation "Start 'gpg-agent', the GnuPG passphrase
 agent, with support for handling OpenSSH material."))))

gnu/home/services/ssh.scm

@@ -70,11 +70,6 @@
             openssh-host-proxy-command
             openssh-host-host-key-algorithms
             openssh-host-accepted-key-types
-            openssh-host-control-master
-            openssh-host-control-file-name
-            openssh-host-control-persist
-            openssh-host-sent-environment-variables
-            openssh-host-environment-variables
             openssh-host-extra-content
             proxy-jump
             proxy-jump-host-name
@@ -89,9 +84,6 @@
 (define (serialize-field-name name)
   (match name
     ('accepted-key-types "PubkeyAcceptedKeyTypes")
-    ('sent-environment-variables "SendEnv")
-    ('environment-variables "SetEnv")
-    ('control-file-name "ControlPath")
     (_
      (let ((name (let ((str (symbol->string name)))
                    (if (string-suffix? "?" str)
@@ -138,14 +130,6 @@
 (define-maybe string)
 (define-maybe natural-number)
 
-(define (serialize-symbol field value)
-  (if (maybe-value-set? value)
-      (string-append "  " (serialize-field-name field) " "
-                     (symbol->string value) "\n")
-      ""))
-
-(define-maybe symbol)
-
 (define (serialize-raw-configuration-string field value)
   (string-append value "\n"))
 (define raw-configuration-string? string?)
@@ -158,33 +142,6 @@
 
 (define-maybe string-list)
 
-(define (env-list? lst)
-  (string-list? lst))
-
-(define (serialize-env-list field lst)
-  (string-append "  " (serialize-field-name field) " "
-                 (string-join lst " ") "\n"))
-
-(define-maybe env-list)
-
-(define (string-alist? lst)
-  (and (list? lst)
-       (every (lambda (x)
-                (and (pair? x)
-                     (string? (car x))
-                     (string? (cdr x))))
-              lst)))
-
-(define (serialize-string-alist field lst)
-  (string-append "  " (serialize-field-name field) " "
-                 (string-join
-                  (map (match-lambda
-                         ((key . value)
-                          (format #nil "~s" (string-append key "=" value))))
-                       lst) " ") "\n"))
-
-(define-maybe string-alist)
-
 (define-record-type <proxy-command>
   (proxy-command command)
   proxy-command?
@@ -318,31 +275,6 @@ through before connecting to the server.")
   (accepted-key-types
    maybe-string-list
    "The list of accepted user public key types.")
-  (control-master
-   maybe-symbol
-   "Enables the sharing of multiple sessions over a single network connection.
-Acceptable values are @code{'no}, @code{'yes}, @code{'auto}, @code{'ask}, and
-@code{'autoask}.")
-  (control-file-name
-   maybe-string
-   "The file name of the control socket used for connection sharing, or
-@code{\"none\"} to disable connection sharing.")
-  (control-persist
-   maybe-string
-   "When used in conjunction with @env{control-master}, specifies that the
-master connection should remain open in the background (waiting for future
-client connections) after the initial client connection has been closed.")
-  (sent-environment-variables
-   maybe-env-list
-   "Specifies which variables from the local environment should be sent to the
-server.  The server must also support it, and the server must be configured to
-accept those environment variables.")
-  (environment-variables
-   maybe-string-alist
-   "List of environment variables with corresponding values to send to the
-server, as an alist of strings of the form @code{'(\"@var{variable}\"
-. \"@var{value}\")}.  The server must also support it, and the server must be
-configured to accept those environment variables.")
   (extra-content
    (raw-configuration-string "")
    "Extra content appended as-is to this @code{Host} block in

gnu/local.mk

@@ -56,8 +56,7 @@
 # Copyright © 2022 Alex Griffin <a@ajgrf.com>
 # Copyright © 2022 ( <paren@disroot.org>
 # Copyright © 2022, 2026 jgart <jgart@dismail.de>
-# Copyright © 2022-2023, 2025-2026 Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org>
-# Copyright © 2023-2026 Zheng Junjie <z572@z572.online>
+# Copyright © 2023-2025 Zheng Junjie <z572@z572.online>
 # Copyright © 2023 Ivana Drazovic <iv.dra@hotmail.com>
 # Copyright © 2023 Andy Tai <atai@atai.org>
 # Copyright © 2023 B. Wilson <elaexuotee@wilsonb.com>
@@ -208,7 +207,6 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/cobol.scm			\
   %D%/packages/code.scm				\
   %D%/packages/commencement.scm			\
-  %D%/packages/compiler-tools.scm		\
   %D%/packages/compression.scm			\
   %D%/packages/compton.scm 			\
   %D%/packages/computer-architecture.scm	\
@@ -218,7 +216,6 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/convmv.scm			\
   %D%/packages/codex.scm				\
   %D%/packages/coq.scm				\
-  %D%/packages/coreboot.scm			\
   %D%/packages/cpio.scm				\
   %D%/packages/cpp.scm 				\
   %D%/packages/cppi.scm				\
@@ -235,7 +232,6 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/darwin.scm			\
   %D%/packages/data-language.scm		\
   %D%/packages/databases.scm			\
-  %D%/packages/datalog.scm			\
   %D%/packages/datamash.scm			\
   %D%/packages/datastructures.scm		\
   %D%/packages/dav.scm				\
@@ -427,7 +423,6 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/kde-utils.scm			\
   %D%/packages/kerberos.scm			\
   %D%/packages/kodi.scm				\
-  %D%/packages/kubernetes.scm	        	\
   %D%/packages/language.scm			\
   %D%/packages/lc0.scm			\
   %D%/packages/lean.scm				\
@@ -504,7 +499,6 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/myrddin.scm			\
   %D%/packages/ncdu.scm				\
   %D%/packages/ncurses.scm			\
-  %D%/packages/netbeans.scm			\
   %D%/packages/netpbm.scm			\
   %D%/packages/nettle.scm			\
   %D%/packages/networking.scm			\
@@ -613,7 +607,6 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/rocm-apps.scm			\
   %D%/packages/rocm-libs.scm			\
   %D%/packages/rocm-tools.scm			\
-  %D%/packages/rocq.scm				\
   %D%/packages/rpc.scm				\
   %D%/packages/rpm.scm				\
   %D%/packages/rrdtool.scm			\
@@ -731,6 +724,7 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/zig.scm				\
   %D%/packages/zig-xyz.scm			\
   %D%/packages/zile.scm				\
+  %D%/packages/zwave.scm			\
 						\
   %D%/services.scm				\
   %D%/services/admin.scm			\
@@ -743,8 +737,6 @@ GNU_SYSTEM_MODULES =				\
   %D%/services/cgit.scm			\
   %D%/services/ci.scm				\
   %D%/services/configuration.scm		\
-  %D%/services/configuration/environment-variables.scm		\
-  %D%/services/configuration/utils.scm		\
   %D%/services/containers.scm   		\
   %D%/services/cuirass.scm			\
   %D%/services/cups.scm				\
@@ -757,7 +749,6 @@ GNU_SYSTEM_MODULES =				\
   %D%/services/docker.scm			\
   %D%/services/authentication.scm		\
   %D%/services/file-sharing.scm			\
-  %D%/services/firmware.scm			\
   %D%/services/games.scm			\
   %D%/services/ganeti.scm			\
   %D%/services/getmail.scm				\
@@ -999,9 +990,9 @@ dist_patch_DATA =						\
   %D%/packages/patches/agg-am_c_prototype.patch			\
   %D%/packages/patches/agg-2.5-gcc8.patch			\
   %D%/packages/patches/akonadi-paths.patch		\
+  %D%/packages/patches/akonadi-not-relocatable.patch		\
   %D%/packages/patches/akonadi-timestamps.patch		\
   %D%/packages/patches/alure-dumb-2.patch			\
-  %D%/packages/patches/amd-smi-newer-libdrm.patch		\
   %D%/packages/patches/amd-smi-python.patch			\
   %D%/packages/patches/ibus-anthy-fix-tests.patch		\
   %D%/packages/patches/ibus-table-paths.patch			\
@@ -1043,7 +1034,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/azr3.patch				\
   %D%/packages/patches/azr3-remove-lash.patch			\
   %D%/packages/patches/barony-fix-textures.patch		\
-  %D%/packages/patches/bam-python3-compat.patch		\
   %D%/packages/patches/bash-completion-directories.patch	\
   %D%/packages/patches/bash-linux-pgrp-pipe.patch		\
   %D%/packages/patches/basis-universal-unbundle-libs.patch	\
@@ -1096,7 +1086,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/catdoc-CVE-2017-11110.patch		\
   %D%/packages/patches/chez-irregex-import-cond-expand.patch	\
   %D%/packages/patches/chez-scheme-bin-sh.patch			\
-  %D%/packages/patches/cianna-remove-error-for-missing-cuda.patch		\
   %D%/packages/patches/circos-remove-findbin.patch		\
   %D%/packages/patches/cdparanoia-fpic.patch			\
   %D%/packages/patches/cdrkit-libre-cross-compile.patch	\
@@ -1135,10 +1124,9 @@ dist_patch_DATA =						\
   %D%/packages/patches/clucene-gcc-14.patch			\
   %D%/packages/patches/clucene-pkgconfig.patch			\
   %D%/packages/patches/coda-use-system-libs.patch		\
-  %D%/packages/patches/codex-acp-0.11.1-disable-code-mode.patch \
-  %D%/packages/patches/codex-acp-0.11.1-remove-patch-sections.patch \
+  %D%/packages/patches/codex-acp-0.9.2-remove-patch-sections.patch \
+  %D%/packages/patches/codex-acp-0.9.2-replace-result-flatten.patch    \
   %D%/packages/patches/codex-0.98.0-remove-patch-sections.patch    \
-  %D%/packages/patches/rust-codex-0.117.0-remove-patch-sections.patch    \
   %D%/packages/patches/cogl-fix-double-free.patch		\
   %D%/packages/patches/collada-dom-boost.patch			\
   %D%/packages/patches/collectd-5.11.0-noinstallvar.patch	\
@@ -1170,6 +1158,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/cryfs-boost-1.89-fix.patch		\
   %D%/packages/patches/csvkit-set-locale-for-tests.patch			\
   %D%/packages/patches/ctranslate2-local-build.patch		\
+  %D%/packages/patches/ctune-cmake-disable-git-clone.patch		\
   %D%/packages/patches/cube-nocheck.patch			\
   %D%/packages/patches/cups-relax-root-ownership-check.patch		\
   %D%/packages/patches/cura-engine-gcc-14.patch			\
@@ -1242,7 +1231,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-treelib-remove-python2-compat.patch	\
   %D%/packages/patches/elm-offline-package-registry.patch	\
   %D%/packages/patches/elm-reactor-static-files.patch		\
-  %D%/packages/patches/emacs-agent-shell-fix-tests.patch        \
+  %D%/packages/patches/emacs-buttercup-1.38-native-comp-spy-on-trampoline-scope.patch	\
   %D%/packages/patches/emacs-deferred-fix-number-of-arguments.patch	\
   %D%/packages/patches/emacs-disable-jit-compilation.patch			\
   %D%/packages/patches/emacs-doc-toc-shell-commands.patch	\
@@ -1299,7 +1288,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/fbgemm-use-system-libraries.patch	\
   %D%/packages/patches/fbreader-curl-7.62.patch		\
   %D%/packages/patches/fbreader-fix-icon.patch		\
-  %D%/packages/patches/fdroidcl-fix-tests.patch		\
   %D%/packages/patches/fenics-dolfin-algorithm.patch		\
   %D%/packages/patches/fenics-dolfin-demo-init.patch		\
   %D%/packages/patches/fenics-dolfin-boost.patch		\
@@ -1366,8 +1354,16 @@ dist_patch_DATA =						\
   %D%/packages/patches/ganeti-disable-version-symlinks.patch	\
   %D%/packages/patches/ganeti-haskell-pythondir.patch		\
   %D%/packages/patches/ganeti-lens-compat.patch			\
+  %D%/packages/patches/ganeti-openssh-test-fix.patch		\
+  %D%/packages/patches/ganeti-pyyaml-compat.patch		\
+  %D%/packages/patches/ganeti-procps-compat.patch		\
+  %D%/packages/patches/ganeti-reorder-arbitrary-definitions.patch	\
+  %D%/packages/patches/ganeti-relax-dependencies.patch		\
   %D%/packages/patches/ganeti-shepherd-master-failover.patch	\
   %D%/packages/patches/ganeti-shepherd-support.patch		\
+  %D%/packages/patches/ganeti-sphinx-import.patch		\
+  %D%/packages/patches/ganeti-template-haskell-2.17.patch	\
+  %D%/packages/patches/ganeti-template-haskell-2.18.patch	\
   %D%/packages/patches/gawk-shell.patch				\
   %D%/packages/patches/gcc-arm-bug-71399.patch			\
   %D%/packages/patches/gcc-arm-link-spec-fix.patch		\
@@ -1463,6 +1459,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/ghostscript-no-header-creationdate.patch \
   %D%/packages/patches/gimp-fix-metadata-editor.patch		\
   %D%/packages/patches/gimp-fix-tiff-load.patch			\
+  %D%/packages/patches/git-clar-path-max.patch			\
   %D%/packages/patches/git-filter-repo-generate-doc.patch	\
   %D%/packages/patches/gklib-suitesparse.patch			\
   %D%/packages/patches/glib-appinfo-watch.patch			\
@@ -1507,7 +1504,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/glibc-reinstate-prlimit64-fallback.patch	\
   %D%/packages/patches/glibc-supported-locales.patch     	\
   %D%/packages/patches/glibc-versioned-locpath.patch		\
-  %D%/packages/patches/glycin-sandbox-Adapt-bwrap-invocation.patch	\
   %D%/packages/patches/gmime-disable-tests.patch		\
   %D%/packages/patches/gmp-arm-asm-nothumb.patch		\
   %D%/packages/patches/gmp-faulty-test.patch			\
@@ -1524,6 +1520,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/gnumach-version.patch			\
   %D%/packages/patches/gnupg-default-pinentry.patch		\
   %D%/packages/patches/gnupg-1-build-with-gcc10.patch		\
+  %D%/packages/patches/gnutls-no-which.patch			\
   %D%/packages/patches/gobject-introspection-absolute-shlib-path.patch \
   %D%/packages/patches/gobject-introspection-cc.patch		\
   %D%/packages/patches/gobject-introspection-girepository.patch	\
@@ -1612,6 +1609,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/hurd-refcounts-assert.patch		\
   %D%/packages/patches/hurd-rumpdisk-no-hd.patch		\
   %D%/packages/patches/hurd-startup.patch			\
+  %D%/packages/patches/hwloc-1-test-btrfs.patch			\
   %D%/packages/patches/hwloc-add-with-opencl.patch		\
   %D%/packages/patches/i3lock-blur-fix-build-on-gcc-10.patch	\
   %D%/packages/patches/i7z-gcc-10.patch				\
@@ -1647,19 +1645,18 @@ dist_patch_DATA =						\
   %D%/packages/patches/id3lib-CVE-2007-4460.patch			\
   %D%/packages/patches/id3lib-UTF16-writing-bug.patch			\
   %D%/packages/patches/ilmbase-fix-tests.patch			\
-  %D%/packages/patches/inetutils-drop-test.patch                \
   %D%/packages/patches/inferno-fix-crash.patch		\
   %D%/packages/patches/iniparser-remove-fetchcontent-usage.patch		\
   %D%/packages/patches/inkscape-libxml2.patch		\
   %D%/packages/patches/instead-use-games-path.patch		\
   %D%/packages/patches/intltool-perl-compatibility.patch	\
+  %D%/packages/patches/inetutils-hurd64.patch			\
   %D%/packages/patches/insight-toolkit-fix-build.patch			\
   %D%/packages/patches/irrlicht-use-system-libs.patch		\
   %D%/packages/patches/irrlicht-link-against-needed-libs.patch	\
   %D%/packages/patches/isl-0.11.1-aarch64-support.patch		\
   %D%/packages/patches/ispell-for-linphone-cmake.patch		\
   %D%/packages/patches/jami-avutil-link.patch   		\
-  %D%/packages/patches/jami-libjami-cmake.patch			\
   %D%/packages/patches/jamvm-1.5.1-aarch64-support.patch	\
   %D%/packages/patches/jamvm-1.5.1-armv7-support.patch	\
   %D%/packages/patches/jamvm-2.0.0-aarch64-support.patch	\
@@ -1671,7 +1668,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/java-commons-collections-fix-java8.patch \
   %D%/packages/patches/java-guava-remove-annotation-deps.patch \
   %D%/packages/patches/java-jeromq-fix-tests.patch		\
-  %D%/packages/patches/java-jtidy-remove-xerces-dependency.patch	\
   %D%/packages/patches/java-openjfx-build-jdk_version.patch     \
   %D%/packages/patches/java-powermock-fix-java-files.patch		\
   %D%/packages/patches/java-simple-xml-fix-tests.patch		\
@@ -1680,14 +1676,13 @@ dist_patch_DATA =						\
   %D%/packages/patches/java-xerces-build_dont_unzip.patch	\
   %D%/packages/patches/java-xerces-xjavac_taskdef.patch	\
   %D%/packages/patches/jbr-17-xcursor-no-dynamic.patch	\
-  %D%/packages/patches/jbr-25-wayland-drag-icon.patch	\
-  %D%/packages/patches/jbr-25-wayland-intra-jvm-dnd.patch	\
   %D%/packages/patches/jdk-currency-time-bomb.patch		\
   %D%/packages/patches/jdk-currency-time-bomb2.patch		\
   %D%/packages/patches/jfsutils-add-sysmacros.patch		\
   %D%/packages/patches/jfsutils-gcc-compat.patch		\
   %D%/packages/patches/jfsutils-include-systypes.patch		\
   %D%/packages/patches/john-the-ripper-jumbo-with-gcc-11.patch	\
+  %D%/packages/patches/json-c-0.12-CVE-2020-12762.patch		\
   %D%/packages/patches/json-c-0.13-CVE-2020-12762.patch		\
   %D%/packages/patches/jsonnet-include-cstdint-for-gcc-13-builds.patch	\
   %D%/packages/patches/julia-SOURCE_DATE_EPOCH-mtime.patch	\
@@ -1742,8 +1737,9 @@ dist_patch_DATA =						\
   %D%/packages/patches/kio-search-smbd-on-PATH.patch		\
   %D%/packages/patches/kismet-unbundle-boost.patch		\
   %D%/packages/patches/kissfft-tflite-micro.patch               \
+  %D%/packages/patches/kitty-fix-wayland-protocols.patch	\
   %D%/packages/patches/kmod-module-directory.patch		\
-  %D%/packages/patches/kmscon-8-runtime-keymap-switch.patch	\
+  %D%/packages/patches/kmscon-runtime-keymap-switch.patch	\
   %D%/packages/patches/knot-remove-runtime-deps.patch		\
   %D%/packages/patches/kobodeluxe-paths.patch			\
   %D%/packages/patches/kobodeluxe-enemies-pipe-decl.patch	\
@@ -1812,6 +1808,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/libqalculate-3.8.0-libcurl-ssl-fix.patch	\
   %D%/packages/patches/libquicktime-ffmpeg.patch 		\
   %D%/packages/patches/libsepol-versioned-docbook.patch		\
+  %D%/packages/patches/libskk-fix-invalid-escape.patch		\
   %D%/packages/patches/libsoup-auth-digest-fix-crash.patch      \
   %D%/packages/patches/libsoup-deadlock-in-add_listener_in_thread.patch \
   %D%/packages/patches/libsoup-fix-merge-of-ranges.patch        \
@@ -1856,7 +1853,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/linux-libre-arm64-mnt-reform-revert-vop2-display-modes.patch	\
   %D%/packages/patches/linux-pam-no-setfsuid.patch		\
   %D%/packages/patches/linux-pam-unix_chkpwd.patch		\
-  %D%/packages/patches/linux-shmem-hurd-xattr.patch		\
   %D%/packages/patches/lirc-localstatedir.patch			\
   %D%/packages/patches/lirc-reproducible-build.patch		\
   %D%/packages/patches/llvm-13-gcc-14.patch			\
@@ -1878,6 +1874,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/lua-5.x-search-path-helpers.patch	\
   %D%/packages/patches/lua-lgi-fix-pango.patch			\
   %D%/packages/patches/lua-lgi-fix-ref.patch			\
+  %D%/packages/patches/luanti-paths.patch			\
   %D%/packages/patches/lugaru-fix-sound.patch			\
   %D%/packages/patches/luit-posix.patch				\
   %D%/packages/patches/lxc-no-static-bin.patch	\
@@ -1936,6 +1933,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/modglue-fix-build.patch		\
   %D%/packages/patches/modem-manager-fix-test-wrapper.patch	\
   %D%/packages/patches/module-init-tools-moduledir.patch	\
+  %D%/packages/patches/monero-use-system-miniupnpc.patch			\
   %D%/packages/patches/mono-1.2.6-bootstrap.patch		\
   %D%/packages/patches/mono-1.9.1-add-MONO_CREATE_IMAGE_VERSION.patch		\
   %D%/packages/patches/mono-1.9.1-fixes.patch			\
@@ -1971,12 +1969,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/netcdf-date-time.patch			\
   %D%/packages/patches/netdde-build-fix.patch			\
   %D%/packages/patches/netdde-csum.patch			\
-  %D%/packages/patches/java-apache-xml-commons-resolver-1.2-netbeans.patch \
-  %D%/packages/patches/java-simplevalidation-1.14.1.patch	\
-  %D%/packages/patches/netbeans-25-nativeexecution-paths.patch \
-  %D%/packages/patches/netbeans-25-terminal-no-login-shell.patch \
-  %D%/packages/patches/netbeans-25-source-only-build.patch	\
-  %D%/packages/patches/netbeans-25-wayland-font-rendering.patch	\
   %D%/packages/patches/netpbm-CVE-2017-2586.patch		\
   %D%/packages/patches/netpbm-CVE-2017-2587.patch		\
   %D%/packages/patches/netsurf-message-timestamp.patch		\
@@ -1987,7 +1979,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/nheko-0-12-1-fix-rendering-replies.patch	\
   %D%/packages/patches/nix-dont-build-html-doc.diff		\
   %D%/packages/patches/nfs4-acl-tools-0.3.7-fixpaths.patch	\
-  %D%/packages/patches/neovim-tree-sitter-grammar-path.patch	\
   %D%/packages/patches/network-manager-plugin-ownership.patch	\
   %D%/packages/patches/network-manager-plugin-path.patch	\
   %D%/packages/patches/newlib-getentropy.patch			\
@@ -2002,13 +1993,10 @@ dist_patch_DATA =						\
   %D%/packages/patches/nss-3.115-disable-broken-tests.patch     \
   %D%/packages/patches/nss-3.115-disable-pkix-ocsp-tests.patch  \
   %D%/packages/patches/ntp-fix-dereferencing-the-wrong-variable.patch   \
-  %D%/packages/patches/ntfs-3g-autoconf-sbin-helpers.patch   \
-  %D%/packages/patches/ntfs-3g-consistent-sbindir-usage.patch   \
   %D%/packages/patches/nvi-add-function-prototypes.patch	\
   %D%/packages/patches/nvi-assume-preserve-path.patch		\
   %D%/packages/patches/nvi-dbpagesize-binpower.patch		\
   %D%/packages/patches/nvi-db4.patch				\
-  %D%/packages/patches/obs-advanced-masks-nlohmann-json.patch	\
   %D%/packages/patches/obs-modules-location.patch		\
   %D%/packages/patches/ocaml-ctypes-test-oo.patch		\
   %D%/packages/patches/ocaml-multiple-definitions.patch		\
@@ -2071,9 +2059,9 @@ dist_patch_DATA =						\
   %D%/packages/patches/openssl-3.0-c-rehash-in.patch		\
   %D%/packages/patches/openssl-hurd64.patch			\
   %D%/packages/patches/opentaxsolver-file-browser-fix.patch     \
+  %D%/packages/patches/open-zwave-hidapi.patch			\
   %D%/packages/patches/opusfile-CVE-2022-47021.patch		\
   %D%/packages/patches/orbit2-fix-array-allocation-32bit.patch \
-  %D%/packages/patches/orca-fix-gst-init-check-call.patch \
   %D%/packages/patches/orpheus-cast-errors-and-includes.patch	\
   %D%/packages/patches/ots-no-include-missing-file.patch	\
   %D%/packages/patches/owncloud-disable-updatecheck.patch	\
@@ -2109,6 +2097,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-clarabel-blas.patch		\
   %D%/packages/patches/python-daemon-relax-lockfile.patch	\
   %D%/packages/patches/python-docrepr-fix-tests.patch		\
+  %D%/packages/patches/python-gpg-setup-72.patch                \
   %D%/packages/patches/python-hdmedians-replace-nose.patch	\
   %D%/packages/patches/python-jinja2-fragments-modify-conftest-py.patch	\
   %D%/packages/patches/python-louvain-fix-test.patch		\
@@ -2120,7 +2109,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-random2-getrandbits-test.patch		\
   %D%/packages/patches/python-pillow-use-zlib-1.3.patch	\
   %D%/packages/patches/python-pydocstyle-add-support-for-pep701.patch	\
-  %D%/packages/patches/python-pynvim-fix-test-command-error.patch	\
   %D%/packages/patches/python-pypytools-python-3-fixes.patch	\
   %D%/packages/patches/python-pyreadstat-link-libiconv.patch	\
   %D%/packages/patches/python-sip-include-dirs.patch	\
@@ -2175,8 +2163,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/perl-www-curl-remove-symbol.patch	\
   %D%/packages/patches/perl-xml-libxml-fix-function-prototypes.patch	\
   %D%/packages/patches/phoronix-test-suite-fsdg.patch		\
-  %D%/packages/patches/php-01-fix-expired-certificate.patch	\
-  %D%/packages/patches/php-02-fix-sni-tests.patch		\
   %D%/packages/patches/picprog-non-intel-support.patch		\
   %D%/packages/patches/pidgin-add-search-path.patch		\
   %D%/packages/patches/pinball-system-ltdl.patch		\
@@ -2265,7 +2251,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-werkzeug-tests.patch		\
   %D%/packages/patches/qdigidoc-bundle-config-files.patch       \
   %D%/packages/patches/qdigidoc-bundle-tsl-files.patch          \
-  %D%/packages/patches/qdigidoc-fix-icon.patch                  \
   %D%/packages/patches/qemu-build-info-manual.patch		\
   %D%/packages/patches/qemu-fix-agent-paths.patch 		\
   %D%/packages/patches/qemu-fix-test-virtio-version.patch       \
@@ -2280,6 +2265,8 @@ dist_patch_DATA =						\
   %D%/packages/patches/qtbase-5-use-TZDIR.patch			\
   %D%/packages/patches/qtscript-disable-tests.patch		\
   %D%/packages/patches/quagga-reproducible-build.patch          \
+  %D%/packages/patches/quickjs-ng-64-bits-precision-on-i686.patch	\
+  %D%/packages/patches/quickjs-ng-fix-atomics.pause-on-32-bit.patch	\
   %D%/packages/patches/quilt-grep-compat.patch 			\
   %D%/packages/patches/qmk-firmware-fix-hacker-dvorak.patch 	\
   %D%/packages/patches/qtwayland-update-wayland-xml.patch	\
@@ -2348,23 +2335,17 @@ dist_patch_DATA =						\
   %D%/packages/patches/rapidcheck-fix-libs.patch		\
   %D%/packages/patches/ratpoison-shell.patch			\
   %D%/packages/patches/retroarch-unbundle-spirv-cross.patch	\
+  %D%/packages/patches/rct-add-missing-headers.patch		\
   %D%/packages/patches/readline-link-ncurses.patch		\
   %D%/packages/patches/renpy-python-3.11-compat.patch			\
   %D%/packages/patches/renpy-fix-integer-slots.patch			\
   %D%/packages/patches/reposurgeon-add-missing-docbook-files.patch	\
   %D%/packages/patches/rdkit-unbundle-external-dependencies.patch	\
-  %D%/packages/patches/r-biostrings-r4.6.0-compat.patch		\
-  %D%/packages/patches/r-h5mread-0001-h5mread-1.3.2-Get-rid-of-non-API-calls-to-R.patch \
   %D%/packages/patches/r-httpuv-1.6.6-unvendor-libuv.patch	\
-  %D%/packages/patches/r-mscoreutils-0001-fix-non-API-call-to-R-SETLENGTH-by-using-lengthgets.patch \
-  %D%/packages/patches/r-rsamtools-r-4.6.0-compat.patch		\
-  %D%/packages/patches/r-snpstats-0001-fixed-non-API-except-for-IS_S4_OBJECT.patch \
-  %D%/packages/patches/r-snpstats-0002-fixed-IS_S4_OBJECT.patch \
   %D%/packages/patches/r-sapa-lapack.patch			\
-  %D%/packages/patches/r-shortread-0001-ShortRead-1.69.3-Get-rid-of-non-API-calls-to-R.patch \
-  %D%/packages/patches/r-sparsearray-r-4.6.0-compat.patch	\
   %D%/packages/patches/ripperx-missing-file.patch		\
   %D%/packages/patches/rpcbind-CVE-2017-8779.patch		\
+  %D%/packages/patches/rtags-separate-rct.patch			\
   %D%/packages/patches/rtosc-0.3.1-fix-invalid-comparison-operator.patch	\
   %D%/packages/patches/racket-chez-scheme-bin-sh.patch		\
   %D%/packages/patches/racket-launcher-config-dir.patch		\
@@ -2397,24 +2378,16 @@ dist_patch_DATA =						\
   %D%/packages/patches/ruby-flores-fix-deprecations.patch	\
   %D%/packages/patches/ruby-latex-decode-fix-test.patch		\
   %D%/packages/patches/ruby-mustache-1.1.1-fix-race-condition-tests.patch \
+  %D%/packages/patches/ruby-pg-fix-connect-timeout.patch	\
   %D%/packages/patches/ruby-x25519-automatic-fallback-non-x86_64.patch \
   %D%/packages/patches/rust-1.64-fix-riscv64-bootstrap.patch	\
   %D%/packages/patches/rust-1.70-fix-rustix-build.patch	\
   %D%/packages/patches/rust-1.78-unwinding-fix.patch		\
   %D%/packages/patches/rust-1.81-fix-riscv64-bootstrap.patch	\
-  %D%/packages/patches/rust-candle-0.9.1-add-candle-onnx-to-workspace.patch	\
   %D%/packages/patches/rust-codex-0.98.0-core-remove-self-dep.patch	\
   %D%/packages/patches/rust-codex-0.98.0-test-shebangs.patch	\
   %D%/packages/patches/rust-codex-0.98.0-test-timeout.patch	\
   %D%/packages/patches/rust-codex-0.98.0-windows-sandbox-protocol-version.patch	\
-  %D%/packages/patches/rust-codex-0.117.0-core-remove-self-dep.patch	\
-  %D%/packages/patches/rust-codex-0.120.0-core-remove-self-dep.patch	\
-  %D%/packages/patches/rust-codex-0.120.0-connectors-cache-test-race.patch	\
-  %D%/packages/patches/rust-codex-0.120.0-remove-libwebrtc.patch	\
-  %D%/packages/patches/rust-codex-0.120.0-test-timeout.patch	\
-  %D%/packages/patches/rust-codex-0.124.0-code-mode-stub-toolname.patch	\
-  %D%/packages/patches/rust-codex-0.124.0-remove-patch-sections.patch	\
-  %D%/packages/patches/rust-librocksdb-sys-unbundled-sources.patch	\
   %D%/packages/patches/rust-ring-0.17-ring-core.patch		\
   %D%/packages/patches/rw-igraph-0.10.patch			\
   %D%/packages/patches/rxvt-unicode-fix-cursor-position.patch	\
@@ -2450,6 +2423,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/seq24-rename-mutex.patch			\
   %D%/packages/patches/libsequoia-fix-ffi-Makefile.patch	\
   %D%/packages/patches/libsequoia-remove-store.patch		\
+  %D%/packages/patches/shakespeare-spl-fix-grammar.patch		\
   %D%/packages/patches/shared-mime-info-xdgmime-path.patch	\
   %D%/packages/patches/sharutils-CVE-2018-1000097.patch		\
   %D%/packages/patches/showtime-python-3.11-compat.patch        \
@@ -2544,11 +2518,10 @@ dist_patch_DATA =						\
   %D%/packages/patches/ultrastar-deluxe-no-freesans.patch		\
   %D%/packages/patches/unity-test-set-subdir-correctly.patch		\
   %D%/packages/patches/unity-test-support-int64.patch		\
-  %D%/packages/patches/ungoogled-chromium-custom-compiler.patch 	\
-  %D%/packages/patches/ungoogled-chromium-empty-parsed-rustc-args.patch	\
   %D%/packages/patches/ungoogled-chromium-extension-search-path.patch	\
   %D%/packages/patches/ungoogled-chromium-RUNPATH.patch		\
   %D%/packages/patches/ungoogled-chromium-system-nspr.patch	\
+  %D%/packages/patches/ungoogled-chromium-unbundle-icu-target.patch     \
   %D%/packages/patches/unknown-horizons-python-3.8-distro.patch	\
   %D%/packages/patches/unknown-horizons-python-3.9.patch	\
   %D%/packages/patches/unknown-horizons-python-3.10.patch	\
@@ -2612,7 +2585,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/webrtc-audio-processing-big-endian.patch	\
   %D%/packages/patches/webrtc-audio-processing-byte-order-pointer-size.patch \
   %D%/packages/patches/webrtc-audio-processing-x86-no-sse.patch	\
-  %D%/packages/patches/websocketpp-boost-compat.patch		\
   %D%/packages/patches/websocketpp-fix-for-cmake-3.15.patch	\
   %D%/packages/patches/wmctrl-64-fix.patch			\
   %D%/packages/patches/wmfire-dont-inline-draw-fire.patch	\
@@ -2650,17 +2622,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/yggdrasil-extra-config.patch	\
   %D%/packages/patches/ypsilon-Use-GNU-toolchain-as-default.patch	\
   %D%/packages/patches/zabbix-agent2-test-timezone-fix.patch	\
-  %D%/packages/patches/zed-0.225.10-add-message-notification-action.patch \
-  %D%/packages/patches/zed-0.225.10-add-guix-container-support.patch	\
-  %D%/packages/patches/zed-0.225.10-collapse-multiline-git-deps.patch	\
-  %D%/packages/patches/zed-0.225.10-exclude-libwebrtc-from-audio.patch		\
-  %D%/packages/patches/zed-0.225.10-disable-dlopen.patch	\
-  %D%/packages/patches/zed-0.225.10-fix-sqlite-memory-mode.patch	\
-  %D%/packages/patches/zed-0.225.10-fix-test-db-isolation.patch	\
-  %D%/packages/patches/zed-0.225.10-fix-workspace-race.patch	\
-  %D%/packages/patches/zed-0.225.10-keep-regular-file-workspaces.patch	\
-  %D%/packages/patches/zed-0.225.10-remove-patch-crates-io.patch	\
-  %D%/packages/patches/zed-0.225.10-use-mock-livekit-on-linux.patch	\
   %D%/packages/patches/zig-0.9-build-respect-PKG_CONFIG-env-var.patch	\
   %D%/packages/patches/zig-0.9-fix-runpath.patch		\
   %D%/packages/patches/zig-0.9-riscv-support.patch		\

gnu/machine/hetzner.scm

@@ -2,7 +2,6 @@
 ;;; Copyright © 2024 Roman Scherer <roman@burningswell.com>
 ;;; Copyright © 2025 Owen T. Heisler <writer@owenh.net>
 ;;; Copyright © 2025 Remco van 't Veer <remco@remworks.net>
-;;; Copyright © 2026 Maxim Cournoyer <maxim@guixotic.coop>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -37,7 +36,6 @@
   #:use-module (gnu system)
   #:use-module (guix base32)
   #:use-module (guix colors)
-  #:use-module (guix deprecation)
   #:use-module (guix derivations)
   #:use-module (guix diagnostics)
   #:use-module (guix gexp)
@@ -57,7 +55,6 @@
   #:use-module (ice-9 string-fun)
   #:use-module (ice-9 textual-ports)
   #:use-module (json)
-  #:use-module ((rnrs base) #:select (assert))
   #:use-module (srfi srfi-1)
   #:use-module (srfi srfi-2)
   #:use-module (srfi srfi-34)
@@ -69,10 +66,8 @@
   #:use-module (ssh session)
   #:use-module (ssh sftp)
   #:use-module (ssh shell)
-  #:export (%hetzner-os-arm             ;deprecated
-            %hetzner-os-x86             ;deprecated
-            make-hetzner-os
-
+  #:export (%hetzner-os-arm
+            %hetzner-os-x86
             deploy-hetzner
             hetzner-configuration
             hetzner-configuration-allow-downgrades?
@@ -87,7 +82,6 @@
             hetzner-configuration-server-type
             hetzner-configuration-ssh-key
             hetzner-configuration-ssh-public-key
-            hetzner-configuration-user
             hetzner-configuration?
             hetzner-environment-type))
 
@@ -104,7 +98,7 @@
 
 ;; Operating system for arm servers using UEFI boot mode.
 
-(define %hetzner-os-arm/efi
+(define %hetzner-os-arm
   (operating-system
     (host-name "guix-arm")
     (bootloader
@@ -134,9 +128,9 @@
 
 ;; Operating system for x86 servers using BIOS boot mode.
 
-(define %hetzner-os-x86/bios
+(define %hetzner-os-x86
   (operating-system
-    (inherit %hetzner-os-arm/efi)
+    (inherit %hetzner-os-arm)
     (host-name "guix-x86")
     (bootloader
      (bootloader-configuration
@@ -152,51 +146,6 @@
              (type "ext4"))
            %base-file-systems))))
 
-(define %hetzner-os-x86/efi
-  (operating-system
-    (inherit %hetzner-os-arm/efi)
-    (host-name "guix-x86")
-    (initrd-modules
-     (cons "virtio_scsi" %base-initrd-modules))))
-
-(define (server-type-name->arch type-name)
-  "Return a symbol corresponding to the server type architecture, e.g.
-@code{'x86} or @code{'arm}."
-  (cond
-    ((string-prefix-ci? "cax" type-name)
-     'arm)
-    (else
-     'x86)))
-
-(define (server-type-name->bootloader type-name)
-  "Return a symbol corresponding to the bootloader type, e.g.
-@code{'efi} or @code{'bios}."
-  (if (eq? 'arm (server-type-name->arch type-name))
-      'efi
-      (cond
-       ((string-prefix-ci? "cx" type-name)
-        'bios)                          ;old, cost-optimized x86 servers
-       (else
-        'efi))))           ;newer, regular performance/general purpose servers
-
-(define* (make-hetzner-os server-type-name)
-  "Return an operating server customized for SERVER-TYPE-NAME, a string like
-\"cx23\" or \"cax11\", denoting the Hetzner virtual server type."
-  (match (server-type-name->arch server-type-name)
-    ('arm %hetzner-os-arm/efi)
-    ('x86
-     (match (server-type-name->bootloader server-type-name)
-       ('bios %hetzner-os-x86/bios)
-       ('efi %hetzner-os-x86/efi)))))
-
-(define-deprecated %hetzner-os-x86
-  make-hetzner-os
-  %hetzner-os-x86/bios)
-
-(define-deprecated %hetzner-os-arm
-  make-hetzner-os
-  %hetzner-os-arm/efi)
-
 (define (operating-system-authorize os)
   "Authorize the OS with the public signing key of the current machine."
   (if (file-exists? %public-key-file)
@@ -242,11 +191,6 @@ Have you run 'guix archive --generate-key'?")
 ;;; Hetzner configuration.
 ;;;
 
-;;; This parameter overrides the value returned by
-;;; `hetzner-configuration-ssh-key'.
-(define %hetzner-ssh-key-file
-  (make-parameter #f))
-
 (define-record-type* <hetzner-configuration> hetzner-configuration
   make-hetzner-configuration hetzner-configuration? this-hetzner-configuration
   (allow-downgrades? hetzner-configuration-allow-downgrades? ; boolean
@@ -258,7 +202,7 @@ Have you run 'guix archive --generate-key'?")
   (build-locally? hetzner-configuration-build-locally? ; boolean
                   (default #t))
   (delete? hetzner-configuration-delete? ; boolean
-           (default #t))
+           (default #f))
   (labels hetzner-configuration-labels ; list of strings
           (default '()))
   (location hetzner-configuration-location ; #f | string
@@ -269,39 +213,26 @@ Have you run 'guix archive --generate-key'?")
         (default #t))
   (ipv6 hetzner-configuration-ipv6      ; boolean | string
         (default #t))
-  (ssh-public-key hetzner-configuration-ssh-public-key* ; #f | public-key | string
+  (ssh-public-key hetzner-configuration-ssh-public-key ; public-key | string
                   (thunked)
-                  (default (and=> (hetzner-configuration-ssh-key
-                                   this-hetzner-configuration)
-                                  public-key-from-file))
-                  (sanitize (lambda (value)
-                              (if (string? value)
-                                  (public-key-from-file value)
-                                  value))))
-  (ssh-key hetzner-configuration-ssh-key* ; #f | string
-           (default #f))
-  (user hetzner-configuration-user      ;string
-        (default "root")))
+                  (default (public-key-from-file (hetzner-configuration-ssh-key this-hetzner-configuration)))
+                  (sanitize
+                   (lambda (value)
+                     (if (string? value) (public-key-from-file value) value))))
+  (ssh-key hetzner-configuration-ssh-key
+           (default #f))) ; #f | string
 
-(define (hetzner-configuration-ssh-key config)
-  (or (%hetzner-ssh-key-file)
-      (hetzner-configuration-ssh-key* config)))
-
-(define (hetzner-configuration-ssh-public-key config)
-  (or (and=> (%hetzner-ssh-key-file) public-key-from-file)
-      (hetzner-configuration-ssh-public-key* config)))
-
-(define (public-key->fingerprint public-key)
-  "Return the SSH public key fingerprint of PUBLIC-KEY, a Guile-SSH public key
-object, in the expected format for the Hetzner API."
-  (let ((hash (get-public-key-hash public-key 'md5)))
+(define (hetzner-configuration-ssh-key-fingerprint config)
+  "Return the SSH public key fingerprint of CONFIG as a string."
+  (and-let* ((pubkey (hetzner-configuration-ssh-public-key config))
+             (hash (get-public-key-hash pubkey 'md5)))
     (bytevector->hex-string hash)))
 
-(define (public-key->string-with-type public-key)
-  "Return the SSH public key string of PUBLIC-KEY, a Guile-SSH public key
-object, in the expected format for the Hetzner API."
-  (format #f "ssh-~a ~a" (get-key-type public-key)
-          (public-key->string public-key)))
+(define (hetzner-configuration-ssh-key-public config)
+  "Return the SSH public key of CONFIG as a string."
+  (let ((public-key (hetzner-configuration-ssh-public-key config)))
+    (format #f "ssh-~a ~a" (get-key-type public-key)
+            (public-key->string public-key))))
 
 
 ;;;
@@ -314,26 +245,21 @@ object, in the expected format for the Hetzner API."
          ;; Get the operating system WITHOUT the provenance service to avoid a
          ;; duplicate symlink conflict in the store.
          (os ((@@ (gnu machine) %machine-operating-system) target)))
-    (match-record config <hetzner-configuration>
-                  ( authorize? allow-downgrades? build-locally? user)
-      (machine
-        (inherit target)
-        (operating-system
-          (if authorize?
-              (operating-system-authorize os)
-              os))
-        (environment managed-host-environment-type)
-        (configuration
-         (machine-ssh-configuration
-           (allow-downgrades? allow-downgrades?)
-           (authorize? authorize?)
-           (build-locally? build-locally?)
-           (host-name (hetzner-server-public-ipv4 server))
-           ;; XXX: match-record doesn't make use of custom accessors to obtain
-           ;; the value, so we can't bind SSH-KEY with it.
-           (identity (hetzner-configuration-ssh-key config))
-           (system (hetzner-server-system server))
-           (user user)))))))
+    (machine
+     (inherit target)
+     (operating-system
+       (if (hetzner-configuration-authorize? config)
+           (operating-system-authorize os)
+           os))
+     (environment managed-host-environment-type)
+     (configuration
+      (machine-ssh-configuration
+       (allow-downgrades? (hetzner-configuration-allow-downgrades? config))
+       (authorize? (hetzner-configuration-authorize? config))
+       (build-locally? (hetzner-configuration-build-locally? config))
+       (host-name (hetzner-server-public-ipv4 server))
+       (identity (hetzner-configuration-ssh-key config))
+       (system (hetzner-server-system server)))))))
 
 (define (hetzner-machine-location machine)
   "Find the location of MACHINE on the Hetzner API."
@@ -437,43 +363,45 @@ Available locations:~%~%~a~%~%For more details, see: ~a")
   "Return the form to bootstrap an operating system on SERVER."
   (let* ((os (machine-operating-system machine))
          (system (hetzner-server-system server))
-         (type-name (hetzner-server-type-name (hetzner-server-type server)))
          (arm? (equal? "arm" (hetzner-server-architecture server)))
          (x86? (equal? "x86" (hetzner-server-architecture server)))
-         (efi? (equal? 'efi (server-type-name->bootloader type-name)))
          (root-fs-type (operating-system-root-file-system-type os)))
     `(operating-system
        (host-name ,(operating-system-host-name os))
        (timezone "Etc/UTC")
        (bootloader (bootloader-configuration
-                     (bootloader ,(if efi?
-                                      'grub-efi-bootloader
-                                      'grub-bootloader))
-                     (targets ,(if efi?
-                                   '(list "/boot/efi")
-                                   '(list "/dev/sda")))
-                     (terminal-outputs '(console))))
+                    (bootloader ,(cond (arm? 'grub-efi-bootloader)
+                                       (x86? 'grub-bootloader)))
+                    (targets ,(cond (arm? '(list "/boot/efi"))
+                                    (x86? '(list "/dev/sda"))))
+                    (terminal-outputs '(console))))
        (initrd-modules (append
                         ,(cond (arm? '(list "sd_mod" "virtio_scsi"))
                                (x86? '(list "virtio_scsi")))
                         %base-initrd-modules))
-       (file-systems (cons* (file-system
-                              (mount-point "/")
-                              (device "/dev/sda1")
-                              (type ,root-fs-type))
-                            ,@(if efi?
-                                  '((file-system
-                                      (mount-point "/boot/efi")
-                                      (device "/dev/sda15")
-                                      (type "vfat")))
-                                  '())
-                            %base-file-systems))
+       (file-systems ,(cond
+                       (arm? `(cons* (file-system
+                                       (mount-point "/")
+                                       (device "/dev/sda1")
+                                       (type ,root-fs-type))
+                                     (file-system
+                                       (mount-point "/boot/efi")
+                                       (device "/dev/sda15")
+                                       (type "vfat"))
+                                     %base-file-systems))
+                       (x86? `(cons* (file-system
+                                       (mount-point "/")
+                                       (device "/dev/sda1")
+                                       (type ,root-fs-type))
+                                     %base-file-systems))))
        (services
-        (cons* (service dhcpcd-service-type)
+        ;; guix 1.4.0 does not have dhcpcd-service-type,
+        ;; so we use dhcp-client-service-type here.
+        (cons* (service dhcp-client-service-type)
                (service openssh-service-type
                         (openssh-configuration
-                          (openssh openssh-sans-x)
-                          (permit-root-login 'prohibit-password)))
+                         (openssh openssh-sans-x)
+                         (permit-root-login 'prohibit-password)))
                %base-services)))))
 
 (define (rexec-verbose session cmd)
@@ -495,9 +423,8 @@ values: list of output lines returned by CMD and its exit code."
 
 (define (hetzner-machine-ssh-key machine)
   "Find the SSH key for MACHINE on the Hetzner API."
-  (and-let* ((config (machine-configuration machine))
-             (public-key (hetzner-configuration-ssh-public-key config))
-             (expected (public-key->fingerprint public-key)))
+  (let* ((config (machine-configuration machine))
+         (expected (hetzner-configuration-ssh-key-fingerprint config)))
     (find (lambda (ssh-key)
             (equal? expected (hetzner-ssh-key-fingerprint ssh-key)))
           (hetzner-api-ssh-keys
@@ -510,12 +437,10 @@ values: list of output lines returned by CMD and its exit code."
     (format #t "creating ssh key for '~a'...\n" name)
     (let* ((config (machine-configuration machine))
            (api (hetzner-configuration-api config))
-           (pubkey (hetzner-configuration-ssh-public-key config))
-           (_ (assert pubkey))
            (ssh-key (hetzner-api-ssh-key-create
-                     api
-                     (public-key->fingerprint pubkey)
-                     (public-key->string-with-type pubkey)
+                     (hetzner-configuration-api config)
+                     (hetzner-configuration-ssh-key-fingerprint config)
+                     (hetzner-configuration-ssh-key-public config)
                      #:labels (hetzner-configuration-labels config))))
       (format #t "successfully created ssh key for '~a'\n" name)
       ssh-key)))
@@ -541,16 +466,6 @@ values: list of output lines returned by CMD and its exit code."
     (formatted-message (G_ "primary ip '~a' does not exist.")
                        name))))
 
-(define temporary-ssh-key-file
-  (let ((ssh-key-file (port-filename (mkstemp "/tmp/hetzner-key-XXXXXX")))
-        (ssh-key #f))
-    (lambda ()
-      "Return a dynamically created, temporary private SSH key."
-      (unless ssh-key
-        (set! ssh-key (make-keypair 'ed25519))
-        (private-key-to-file ssh-key ssh-key-file))
-      ssh-key-file)))
-
 (define (hetzner-machine-create-server machine)
   "Create the Hetzner server for MACHINE."
   (let* ((config (machine-configuration machine))
@@ -558,14 +473,13 @@ values: list of output lines returned by CMD and its exit code."
          (server-type (hetzner-configuration-server-type config)))
     (format #t "creating '~a' server for '~a'...\n" server-type name)
     (let* ((ssh-key (hetzner-machine-ssh-key machine))
-           (_ (assert ssh-key))         ;required during provisioning
            (ipv4 (hetzner-configuration-ipv4 config))
            (ipv6 (hetzner-configuration-ipv6 config))
            (api (hetzner-configuration-api config))
            (server (hetzner-api-server-create
                     api
                     (machine-display-name machine)
-                    #:ssh-keys (list ssh-key)
+                    (list ssh-key)
                     #:ipv4 (if (string? ipv4)
                                (hetzner-primary-ip-id (hetzner-resolve-ip api ipv4))
                                ipv4)
@@ -613,15 +527,13 @@ values: list of output lines returned by CMD and its exit code."
     (write-known-host! ssh-session)))
 
 (define (hetzner-machine-enable-rescue-system machine server)
-  "Enable the rescue system on the Hetzner SERVER for MACHINE, provisioning it
-with the configured SSH key, or a dynamically created temporary one."
+  "Enable the rescue system on the Hetzner SERVER for MACHINE."
   (let* ((name (machine-display-name machine))
          (config (machine-configuration machine))
          (api (hetzner-configuration-api config))
-         (ssh-keys (and=> (hetzner-machine-ssh-key machine) list)))
+         (ssh-keys (list (hetzner-machine-ssh-key machine))))
     (format #t "enabling rescue system on '~a'...\n" name)
-    (let ((action (hetzner-api-server-enable-rescue-system
-                   api server #:ssh-keys ssh-keys)))
+    (let ((action (hetzner-api-server-enable-rescue-system api server ssh-keys)))
       (format #t "successfully enabled rescue system on '~a'\n" name)
       action)))
 
@@ -657,7 +569,6 @@ with the configured SSH key, or a dynamically created temporary one."
 (set! hetzner-machine-ssh-run-script hetzner-machine-ssh-run-script)
 
 (define (hetzner-machine-rescue-install-os machine ssh-session server)
-  "Init a minimal Guix System to bootstrap from."
   (let ((name (machine-display-name machine))
         (os (hetzner-machine-bootstrap-os-form machine server)))
     (format #t "installing guix operating system on '~a'...\n" name)
@@ -676,9 +587,9 @@ chmod 600 /mnt/root/.ssh/authorized_keys
 
 # Small instance don't have much disk space.  Bind mount the store of the
 # rescue system to the tmp directory of the new Guix system.
-mkdir -p /mnt/tmp/gnu
-mkdir -p /gnu
-mount --bind /mnt/tmp/gnu /gnu
+mkdir -p /mnt/tmp/gnu/store
+mkdir -p /gnu/store
+mount --bind /mnt/tmp/gnu/store /gnu/store
 
 wget -O /tmp/guix-install.sh https://guix.gnu.org/guix-install.sh
 chmod +x /tmp/guix-install.sh
@@ -754,8 +665,7 @@ apt-get install cloud-initramfs-growroot uidmap --assume-yes"))
       action)))
 
 (define (hetzner-machine-provision machine)
-  "Provision a Guix System bootstrap server for MACHINE on the Hetzner Cloud
-service."
+  "Provision a server for MACHINE on the Hetzner Cloud service."
   (with-exception-handler
       (lambda (exception)
         (let ((config (machine-configuration machine))
@@ -770,10 +680,12 @@ service."
         (let ((ssh-session (hetzner-machine-wait-for-ssh machine server)))
           (hetzner-machine-rescue-install-packages machine ssh-session)
           (hetzner-machine-rescue-partition machine ssh-session)
-          (hetzner-machine-rescue-install-os machine ssh-session server))
-        (hetzner-machine-reboot machine server)
-        (hetzner-machine-authenticate-host machine server)
-        server))))
+          (hetzner-machine-rescue-install-os machine ssh-session server)
+          (hetzner-machine-reboot machine server)
+          (sleep 5)
+          (hetzner-machine-authenticate-host machine server)
+          server)))
+    #:unwind? #t))
 
 (define (machine-not-provisioned machine)
   (formatted-message
@@ -799,47 +711,16 @@ an environment type of 'hetzner-environment-type'."
 ;;; System deployment.
 ;;;
 
-(define (cleanup-temporary-ssh-key/maybe api ssh-key)
-  "Delete the temporary SSH private key file from the file system and the
-Hetzner API, if one was created used."
-  (when (%hetzner-ssh-key-file)
-    (format #t "cleaning up temporary ssh key~%")
-    (delete-file (%hetzner-ssh-key-file))
-    (%hetzner-ssh-key-file #f)
-    (hetzner-api-ssh-key-delete api ssh-key)))
-
 (define (deploy-hetzner machine)
   "Internal implementation of 'deploy-machine' for 'machine' instances with an
 environment type of 'hetzner-environment-type'."
   (hetzner-machine-validate machine)
+  (unless (hetzner-machine-ssh-key machine)
+    (hetzner-machine-ssh-key-create machine))
+  (let ((server (or (hetzner-machine-server machine)
+                    (hetzner-machine-provision machine))))
+    (deploy-machine (hetzner-machine-delegate machine server))))
 
-  (define server (hetzner-machine-server machine))
-  (define config (machine-configuration machine))
-  (define api (hetzner-configuration-api config))
-  (define ssh-key #f)                   ;hetzner API key
-
-  ;; Provisioning requires uploading an SSH key via the Hetzner API to
-  ;; authenticate non-interactively with the newly created server.
-  (unless server                        ;provisioning?
-    (unless (hetzner-configuration-ssh-public-key config)
-      (format #t "using a temporary ssh key for provisioning~%")
-      (%hetzner-ssh-key-file (temporary-ssh-key-file)))
-    (set! ssh-key (or (hetzner-machine-ssh-key machine)
-                      (hetzner-machine-ssh-key-create machine))))
-
-  ;; Cleaning-up here is a bit tricky, as `deploy-machine' returns a monadic
-  ;; value immediately, to be executed later; this means the clean-up must be
-  ;; delayed until monadic evaluation time.
-  (let* ((server (or server (hetzner-machine-provision machine)))
-         (delegate-machine (hetzner-machine-delegate machine server)))
-    ;; FIXME: The clean-up in the guard does not run even when
-    ;; `deploy-machine' fails.
-    (guard (c (#t (cleanup-temporary-ssh-key/maybe api ssh-key)
-                  (raise c)))
-      (mlet %store-monad
-          ((value (deploy-machine delegate-machine)))
-        (cleanup-temporary-ssh-key/maybe api ssh-key)
-        (return value)))))
 
 
 ;;;

gnu/machine/hetzner/http.scm

@@ -1,6 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2024 Roman Scherer <roman@burningswell.com>
-;;; Copyright © 2026 Maxim Cournoyer <maxim@guixotic.coop>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -20,7 +19,6 @@
 (define-module (gnu machine hetzner http)
   #:use-module (guix diagnostics)
   #:use-module (guix i18n)
-  #:use-module (guix memoization)
   #:use-module (guix records)
   #:use-module (ice-9 iconv)
   #:use-module (ice-9 match)
@@ -53,7 +51,6 @@
             hetzner-api-action-wait
             hetzner-api-actions
             hetzner-api-create-ssh-key
-            hetzner-api-images
             hetzner-api-locations
             hetzner-api-primary-ips
             hetzner-api-request-body
@@ -84,23 +81,6 @@
             hetzner-error-code
             hetzner-error-message
             hetzner-error?
-            hetzner-image?
-            hetzner-image-id
-            hetzner-image-type
-            hetzner-image-status
-            hetzner-image-name
-            hetzner-image-description
-            hetzner-image-disk-size
-            hetzner-image-created
-            hetzner-image-created-from
-            hetzner-image-bound-to
-            hetzner-image-os-flavor
-            hetzner-image-os-version
-            hetzner-image-rapid-deploy
-            hetzner-image-protection
-            hetzner-image-deprecated
-            hetzner-image-deleted
-            hetzner-image-architecture
             hetzner-ipv4-blocked?
             hetzner-ipv4-dns-ptr
             hetzner-ipv4-id
@@ -168,7 +148,6 @@
             hetzner-ssh-key?
             make-hetzner-action
             make-hetzner-error
-            make-hetzner-image
             make-hetzner-ipv4
             make-hetzner-ipv6
             make-hetzner-location
@@ -189,19 +168,7 @@
   (make-parameter (getenv "GUIX_HETZNER_API_TOKEN")))
 
 ;; Ideally this would be a Guix image. Maybe one day.
-(define %hetzner-default-server-image
-  (mlambda (api)
-    "Return the latest Debian image available.  This image gets used for the
-initial system provisioning phase, before Guix System takes over."
-    (let ((debian-images (filter (lambda (image)
-                                   (string=? "debian"
-                                             (hetzner-image-os-flavor image)))
-                                 (hetzner-api-images api))))
-      (hetzner-image-name
-       (last (sort debian-images
-                   (lambda (x y)
-                     (< (string->number (hetzner-image-os-version x))
-                        (string->number (hetzner-image-os-version y))))))))))
+(define %hetzner-default-server-image "debian-11")
 
 ;; Falkenstein, Germany
 (define %hetzner-default-server-location "fsn1")
@@ -323,43 +290,6 @@ initial system provisioning phase, before Guix System takes over."
   (server-type hetzner-server-type "server_type"
                json->hetzner-server-type)) ; <hetzner-server-type>
 
-(define-json-mapping <hetzner-image>
-  make-hetzner-image hetzner-image? json->hetzner-image
-  (id hetzner-image-id)                             ;integer
-  (type hetzner-image-type)                         ;string
-  (status hetzner-image-status)                     ;string
-  (name hetzner-image-name "name" (null-or identity)) ;string | null
-  (description hetzner-image-description)           ;string
-  (image-size hetzner-image-size "image_size"       ;number | null (GiB)
-              (null-or identity))
-  (disk-size hetzner-image-disk-size "disk_size")         ;number (GiB)
-  (created hetzner-image-created)                         ;string (date)
-  (created-from hetzner-image-created-from "created_from" ;object | null
-                (null-or json->hetzner-image-created-from))
-  (bound-to hetzner-image-bound-to "bound_to" (null-or identity)) ;integer | null
-  (os-flavor hetzner-image-os-flavor "os_flavor")               ;string
-  (os-version hetzner-image-os-version "os_version"             ;string | null
-              (null-or identity))
-  (rapid-deploy hetzner-image-rapid-deploy "rapid_deploy") ;boolean
-  (protection hetzner-image-protection "protection"        ;object
-              json->hetzner-image-protection)
-  (deprecated hetzner-image-deprecated)      ;string
-  (deleted hetzner-image-deleted "deleted" (null-or identity)) ;null | string
-  (architecture hetzner-image-architecture)) ;string
-
-(define (null-or parser)
-  (lambda (value)
-    (if (eq? 'null value)
-        *unspecified*
-	(parser value))))
-
-(define-json-type <hetzner-image-created-from>
-  (id)                                  ;integer
-  (name))                               ;string
-
-(define-json-type <hetzner-image-protection>
-  (delete))                             ;boolean
-
 (define-json-mapping <hetzner-server-type>
   make-hetzner-server-type hetzner-server-type? json->hetzner-server-type
   (architecture hetzner-server-type-architecture) ; string
@@ -668,11 +598,11 @@ initial system provisioning phase, before Guix System takes over."
   (apply hetzner-api-list api "/locations" "locations" json->hetzner-location options))
 
 (define* (hetzner-api-server-create
-          api name #:key
-          ssh-keys
+          api name ssh-keys
+          #:key
           (ipv4 #f)
           (ipv6 #f)
-          (image (%hetzner-default-server-image api))
+          (image %hetzner-default-server-image)
           (labels '())
           (location %hetzner-default-server-location)
           (server-type %hetzner-default-server-type)
@@ -690,11 +620,7 @@ initial system provisioning phase, before Guix System takes over."
                           ,@(if (integer? ipv6) `(("ipv6" . ,ipv6)) '())))
                         ("location" . ,location)
                         ("server_type" . ,server-type)
-                        ,@(if ssh-keys
-                              `(("ssh_keys" .
-                                 ,(apply vector (map hetzner-ssh-key-id
-                                                     ssh-keys))))
-                              '())
+                        ("ssh_keys" . ,(apply vector (map hetzner-ssh-key-id ssh-keys)))
                         ("start_after_create" . ,start-after-create?)))))
     (hetzner-api-action-wait api (hetzner-api-body-action body))
     (json->hetzner-server (assoc-ref body "server"))))
@@ -705,15 +631,12 @@ initial system provisioning phase, before Guix System takes over."
     (hetzner-api-action-wait api (hetzner-api-body-action body))))
 
 (define* (hetzner-api-server-enable-rescue-system
-          api server #:key ssh-keys (type "linux64"))
+          api server ssh-keys #:key (type "linux64"))
   "Enable the rescue system for SERVER with the Hetzner API."
-  (let* ((ssh-keys (and ssh-keys
-                        (apply vector (map hetzner-ssh-key-id ssh-keys))))
+  (let* ((ssh-keys (apply vector (map hetzner-ssh-key-id ssh-keys)))
          (body (hetzner-api-post
                 api (hetzner-server-path server "/actions/enable_rescue")
-                #:body `(,@(if ssh-keys
-                               `(("ssh_keys" . ,ssh-keys))
-                               '())
+                #:body `(("ssh_keys" . ,ssh-keys)
                          ("type" . ,type)))))
     (hetzner-api-action-wait api (hetzner-api-body-action body))))
 
@@ -764,8 +687,3 @@ initial system provisioning phase, before Guix System takes over."
   "Get server types from the Hetzner API."
   (apply hetzner-api-list api "/server_types" "server_types"
          json->hetzner-server-type options))
-
-(define* (hetzner-api-images api . options)
-  "Get image types from the Hetzner API."
-  (apply hetzner-api-list api "/images" "images"
-         json->hetzner-image options))

gnu/packages.scm

@@ -164,12 +164,6 @@ flags."
              %default-package-module-path
              channels-scm))))
 
-(define (strip-trailing-slash s)
-  ;; Strip the trailing slash of a string, if present.
-  (if (string-suffix? "/" s)
-      (string-drop-right s 1)
-      s))
-
 (define %patch-path
   ;; Define it after '%package-module-path' so that '%load-path' contains user
   ;; directories, allowing patches in $GUIX_PACKAGE_PATH to be found.
@@ -178,7 +172,7 @@ flags."
           (if (string=? directory %distro-root-directory)
               (string-append directory "/gnu/packages/patches")
               directory))
-        (map strip-trailing-slash %load-path))))
+        %load-path)))
 
 ;; This procedure is used by Emacs-Guix up to 0.5.1.1, so keep it for now.
 ;; See <https://github.com/alezost/guix.el/issues/30>.

gnu/packages/accessibility.scm

@@ -185,7 +185,7 @@ terminals.")
     (native-inputs
      (append
        (list clisp
-             python-cython-0 ;; See https://bugzilla.redhat.com/show_bug.cgi?id=2231865
+             python-cython
              doxygen
              gettext-minimal)
        ;; icedtea doesn't build reliably on all architectures.

gnu/packages/admin.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2012-2026 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2012-2025 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2013 Cyril Roelandt <tipecaml@gmail.com>
 ;;; Copyright © 2014, 2015, 2016, 2018, 2019, 2020 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2014, 2015-2018, 2020-2023 Eric Bavier <bavier@posteo.net>
@@ -1158,7 +1158,7 @@ on memory usage on GNU/Linux systems.")
 (define-public htop
   (package
     (name "htop")
-    (version "3.5.1")
+    (version "3.4.1")
     (source
      (origin
        (method git-fetch)
@@ -1166,7 +1166,7 @@ on memory usage on GNU/Linux systems.")
              (url "https://github.com/htop-dev/htop")
              (commit version)))
        (sha256
-        (base32 "187gyj081n6qsidll5wdri3jkr4m2i4m461z3xv03y342f5yj3lv"))
+        (base32 "058y4a4mvx9m179dyr4wi8mlm6i4ybywshadaj4cvfn9fv0r0nkx"))
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (arguments
@@ -1302,15 +1302,14 @@ re-executing them as necessary.")
 (define-public inetutils
   (package
     (name "inetutils")
-    (version "2.7")
+    (version "2.5")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnu/inetutils/inetutils-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "11n01vsd51r7qraaaylhhx04hq4s6vcq0896zkz0yp1wvqfbwmm1"))
-              (patches (search-patches "inetutils-drop-test.patch"))))
+                "0q1257ci22g2jbdiqs00mharc1lqkbibdlkhj23f3si6qjxkn17s"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -1341,7 +1340,17 @@ re-executing them as necessary.")
                              "\\\""))
       ;; On some systems, 'libls.sh' may fail with an error such as:
       ;; "Failed to tell switch -a apart from -A".
-      #:parallel-tests? #f))
+      #:parallel-tests? #f
+      #:phases (if (target-hurd64?)
+                   #~(modify-phases %standard-phases
+                       (add-after 'unpack 'apply-hurd64-patch
+                         (lambda _
+                           (let ((patch
+                                  #$(local-file
+                                     (search-patch
+                                      "inetutils-hurd64.patch"))))
+                             (invoke "patch" "--force" "-p1" "-i" patch)))))
+                   #~%standard-phases)))
     (inputs
      (list coreutils
            shadow                     ;for login (used in telnetd and rlogind)
@@ -1364,7 +1373,7 @@ hostname.")
 (define-public shadow
   (package
     (name "shadow")
-    (version "4.19.0")
+    (version "4.13")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1372,7 +1381,7 @@ hostname.")
                     "download/" version "/shadow-" version ".tar.xz"))
               (sha256
                (base32
-                "0crbcfdp7ayyii33srinwd0yr27dkx9mbzglx1d0mvhr1z28xclw"))))
+                "0b6xz415b4y3y5nk3pw9xibv05kln4cjbmhybyncmrx2g5fj9zls"))))
     (build-system gnu-build-system)
     (arguments
      `(;; Assume System V `setpgrp (void)', which is the default on GNU
@@ -1381,9 +1390,7 @@ hostname.")
        '(,@(if (target-hurd?)
              '()
              '("--with-libpam"))
-         "--disable-logind" ;; no systemd
-         "--without-libbsd" ;; no libbsd
-         "shadow_cv_logdir=/var/log"
+          "shadow_cv_logdir=/var/log"
           "ac_cv_func_setpgrp_void=yes")
        #:phases
        (modify-phases %standard-phases
@@ -1419,8 +1426,15 @@ hostname.")
              ;; The top-level Makefile.am wrongfully has "SUBDIRS += man"
              ;; under "if ENABLE_REGENERATE_MAN", even though prebuilt man
              ;; pages are available.  Thus, install them manually.
-             (invoke "make" "-C" "man" "install"))))))
-    (native-inputs (list pkg-config))
+             (invoke "make" "-C" "man" "install")))
+         (add-after 'install-man-pages 'remove-groups
+           (lambda* (#:key outputs #:allow-other-keys)
+             ;; Remove `groups', which is already provided by Coreutils.
+             (let* ((out (assoc-ref outputs "out"))
+                    (bin (string-append out "/bin"))
+                    (man (string-append out "/share/man")))
+               (delete-file (string-append bin "/groups"))
+               (for-each delete-file (find-files man "^groups\\."))))))))
     (inputs
      (append (if (target-hurd?)
                  '()
@@ -1972,7 +1986,7 @@ maintenance releases.")
 (define-public dhcpcd
   (package
     (name "dhcpcd")
-    (version "10.3.2")
+    (version "10.3.0")
     (source
      (origin
        (method git-fetch)
@@ -1981,7 +1995,7 @@ maintenance releases.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1z5rpi0n2vwhkh3c4d0dxwp38fl18br58jpy7kzh97gzg3gpk5dl"))))
+        (base32 "058k8wbzbjb6mm6qklv40z1y4k6sdb4ysap1xk6pny1m1f9xkdax"))))
     (inputs (list bash-minimal coreutils-minimal eudev sed))
     (build-system gnu-build-system)
     (arguments
@@ -3142,7 +3156,7 @@ track changes in important system configuration files.")
 (define-public libcap-ng
   (package
     (name "libcap-ng")
-    (version "0.9.3")
+    (version "0.9")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -3151,20 +3165,12 @@ track changes in important system configuration files.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "13iy7dddcslpmmdhybgvfcgznsvpaa4r3fp9ldlpkq592lw8yyva"))))
+                "0izrrh2kmhi6dcy5iqcccmx90nwlaqcglhc60sl8n5ds8il14pi8"))))
     (build-system gnu-build-system)
     (arguments
-     (list
-      #:configure-flags
-      #~(list "--disable-static"
-              "--without-python")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'patch-configure-ac
-            (lambda _
-              (substitute* "configure.ac"
-                (("linux/sock_diag.h" all)
-                 (string-append all " \\"))))))))
+     `(#:configure-flags
+       (list "--disable-static"
+             "--without-python")))
     (inputs
      (list libbpf))
     (native-inputs
@@ -3442,7 +3448,7 @@ modules and plugins that extend Ansible.")
      (list ansible
            bash-minimal
            encfs
-           fuse
+           fuse-2
            util-linux ;; for umount
            findutils
            git
@@ -3751,68 +3757,59 @@ summarizes network bandwidth by process and remote host.")
 (define-public munge
   (package
     (name "munge")
-    (version "0.5.18")
+    (version "0.5.14")
     (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/dun/munge")
-                     (commit (string-append "munge-" version))))
-              (file-name (git-file-name name version))
+              (method url-fetch)
+              (uri (string-append "https://github.com/dun/munge/releases/"
+                                  "download/munge-" version "/munge-"
+                                  version ".tar.xz"))
               (sha256
                (base32
-                "1b7gm680dlvmgvj9vxy7n0cqmnv1rl9n4563vasxdxx54f78j30s"))
+                "0h06sghb4rqvv1ywyd6mzsmbcgh712v6ygrff0gzm440y4ca41k6"))
               (modules '((guix build utils)))
               (snippet
-               ;; Don't insist on write access to /var.
-               #~(substitute* "src/etc/Makefile.am"
-                   (("\\$\\(MKDIR_P\\) .*(local|run)statedir.*" all)
-                    (string-append ": " all))))))
+               '(begin
+                  ;; Don't insist on write access to /var.
+                  (substitute* "src/etc/Makefile.in"
+                    (("\\$\\(INSTALL\\)(.*)localstatedir" _ middle)
+                     (string-append "-$(INSTALL)" middle "localstatedir"))
+                    (("\\$\\(MKDIR_P\\) .*(local|run)statedir.*")
+                     ""))
+                  #t))))
     (inputs
      (list openssl libgcrypt))
-    (native-inputs
-     (list autoconf
-           automake
-           libtool
-           procps))                               ;for tests
     (build-system gnu-build-system)
     (arguments
-     (list #:configure-flags
-           #~(list "--localstatedir=/var"
-                   "--disable-static"
-                   #$@(if (%current-target-system)
-                          ;; Assume yes on pipes when cross compiling.
-                          `("ac_cv_file__dev_spx=yes"
-                            "x_ac_cv_check_fifo_recvfd=yes")
-                          '())
-
-                   ;; The '.pc' file is not installed when omitting this flag.
-                   (string-append "--with-pkgconfigdir="
-                                  #$output "/lib/pkgconfig"))
-           #:phases
-           #~(modify-phases %standard-phases
-               (add-before 'bootstrap 'pre-bootstrap
-                 (lambda _
-                   (for-each patch-shebang (find-files "build-aux"))))
-               (add-after 'unpack 'skip-failing-tests
-                 (lambda _
-                   ;; Pass '--force' to 'munged'; without it, it fails with "Socket
-                   ;; is inaccessible" due to the build directory not being
-                   ;; world-readable.
-                   (substitute* "tests/sharness.d/03-munged.sh"
-                     (("--group-update-time=-1" all)
-                      (string-append all " --force")))
-
-                   ;; The tests below invoke 'sudo' or have special expectations
-                   ;; about network interfaces.
-                   (for-each (lambda (test)
-                               (substitute* "tests/Makefile.am"
-                                 (((string-append test "\\.t "))
-                                  "")))
-                             (list "0100-munged-lock"
-                                   "0101-munged-security-socket"
-                                   "0102-munged-security-keyfile"
-                                   "0103-munged-security-logfile"
-                                   "0110-munged-origin-addr")))))))
+     `(#:configure-flags
+       (list "--localstatedir=/var"
+             (string-append "--with-pkgconfigdir="
+                            (assoc-ref %outputs "out") "/lib/pkgconfig")
+             (string-append "--with-libgcrypt-prefix="
+                            (assoc-ref %build-inputs "libgcrypt"))
+             ,@(if (%current-target-system)
+                 ;; Assume yes on pipes when cross compiling.
+                 `("ac_cv_file__dev_spx=yes"
+                   "x_ac_cv_check_fifo_recvfd=yes")
+                 '()))
+       #:phases
+       (modify-phases %standard-phases
+         ;; XXX Many test series fail.  Some might be fixable, others do no-no
+         ;; things like invoking ‘sudo’.
+         (add-after 'unpack 'skip-failing-tests
+           (lambda _
+             (for-each (lambda (test)
+                         (substitute* "t/Makefile.in"
+                           (((string-append test "\\.t ")) "")))
+                       (list "0100-munged-lock"
+                             "0010-basic"
+                             "0011-munged-cmdline"
+                             "0012-munge-cmdline"
+                             "0013-unmunge-cmdline"
+                             "0101-munged-security-socket"
+                             "0102-munged-security-keyfile"
+                             "0103-munged-security-logfile"
+                             "0110-munged-origin-addr"))
+             #t)))))
     (home-page "https://dun.github.io/munge/")
     (synopsis "Cluster computing authentication service")
     (description
@@ -4711,7 +4708,7 @@ information tool.")
 (define-public fastfetch-minimal
   (package
     (name "fastfetch-minimal")
-    (version "2.63.1")
+    (version "2.60.0")
     (source
      (origin
        (method git-fetch)
@@ -4720,7 +4717,7 @@ information tool.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "13a5maf8jxyga5bga96s40binqp2i54pjlipsnqgfj85q01yzkg9"))
+        (base32 "089577qgxd63zqzd00fz381bfpmj6pwlmy2zfan9r6gbm1jvj4i8"))
        (modules '((guix build utils)))
        (snippet '(begin
                    (delete-file-recursively "src/3rdparty")
@@ -7052,7 +7049,7 @@ network, which causes enabled computers to power on.")
 (define-public witr
   (package
     (name "witr")
-    (version "0.3.1")
+    (version "0.1.7")
     (source
      (origin
        (method git-fetch)
@@ -7061,7 +7058,7 @@ network, which causes enabled computers to power on.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "03v9n4mdvqm0knqjl4s64321i5clqpmlrlkkdb87glzb9p28sg00"))))
+        (base32 "18xx01lxd5j019gy9jmpms3awv4snlr028w01bfkyfid6hlwxbq2"))))
     (build-system go-build-system)
     (arguments
      (list
@@ -7179,35 +7176,6 @@ stored in an SQL database.")
 (connects via USB OTG).")
     (license license:expat)))
 
-(define-public yoctofetch
-  (package
-    (name "yoctofetch")
-    (version "2.0.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://codeberg.org/Phosphenius/yoctofetch.git")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0smkaydv74p2231gafibvqbwsy469w56hya8gz8wq0gw7m2l7zh3"))))
-    ; Support for other platforms not available per upstream:
-    ; https://codeberg.org/Phosphenius/yoctofetch#supported-platforms
-    (supported-systems '("x86_64-linux" "aarch64-linux"))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:tests? #f)) ; No tests available.
-    (home-page "https://codeberg.org/Phosphenius/yoctofetch")
-    (synopsis "Fast and low footprint system fetch tool for the Linux UAPI")
-    (description
-     "This package provides a system fetch tool, similar to
-@command{neofetch}, @command{fastfetch}, etc.  It is lightweight and
-has a focus on performance.  It can be used as a greeter by starting
-it from @file{~/.bashrc} for example.")
-    (license license:agpl3+)))
-
 (define-public zzz
   (package
     (name "zzz")

gnu/packages/adns.scm

@@ -1,4 +1,9 @@
 ;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2014 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2015, 2016, 2018, 2020 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2019, 2021 Marius Bakke <marius@gnu.org>
+;;; Copyright © 2023 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2026 Anderson Torres <anderson.torres.8519@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -17,20 +22,162 @@
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 (define-module (gnu packages adns)
-  #:use-module (gnu packages dns)
-  #:use-module (guix deprecation))
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (gnu packages m4)
+  #:use-module (gnu packages pkg-config)
+  #:use-module (guix build-system cmake)
+  #:use-module (guix build-system gnu)
+  #:use-module (guix download)
+  #:use-module (guix git-download)
+  #:use-module (guix gexp)
+  #:use-module (guix packages)
+  #:use-module (guix utils))
 
-(define-deprecated/public-alias adns
-  (@ (gnu packages dns) adns))
+(define-public adns
+  (package
+    (name "adns")
+    (version "1.6.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "git://git.chiark.greenend.org.uk/~ianmdlvl/adns.git")
+              (commit (string-append "adns-" version))))
+       (sha256
+        (base32
+         "0ln3l5j7wb1xazrzl76p9xar52p6l2k1cwy7jazxw1acl71k9h5n"))))
+    (build-system gnu-build-system)
+    (arguments
+     (list
+      ;; INFO: Tests expect real name resolution to work.
+      #:tests? #f
+      #:configure-flags
+      #~(list
+         ;; Make sure the programs under bin/ find libadns.so.
+         (string-append "LDFLAGS=-Wl,-rpath -Wl,"
+                        #$output:out
+                        "/lib"))))
+    (native-inputs
+     (list m4))
+    (home-page "https://www.gnu.org/software/adns/")
+    (synopsis "Asynchronous DNS client library and utilities")
+    (description
+     "GNU adns is a C library that provides easy-to-use @acronym{DNS, Domain
+Name System} resolution functionality.  The library is asynchronous, allowing
+several concurrent calls.  The package also includes several command-line
+utilities for use in scripts.")
+    (license license:gpl3+)))
 
-(define-deprecated/public-alias c-ares
-  (@ (gnu packages dns) c-ares))
+(define-public c-ares
+  (package
+    (name "c-ares")
+    (version "1.34.4")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://github.com/c-ares/c-ares/releases/download/v"
+                    version "/" name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "0br2msk3bpl5myhjp9vr5j2scpspvbg2fpnz69dcrr4ycpnxnf7s"))))
+    (build-system gnu-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'check 'filter-live-tests
+            (lambda _
+              ;; Filter tests that require internet access.
+              (setenv "GTEST_FILTER" "-*.Live*:*.FamilyV4*")))
+          #$@(if (system-hurd?)
+                 #~((add-after 'unpack 'skip-tests
+                      (lambda _
+                        (substitute* "test/ares-test-main.cc"
+                          (("(^| )main *\\(.*" all)
+                           (string-append all "  exit (77);\n")))))
+                    (add-after 'filter-live-tests 'filter-hurd-tests
+                      (lambda _
+                        (setenv "GTEST_FILTER"
+                                (string-append
+                                 (getenv "GTEST_FILTER")
+                                 ":.*Basic/2"
+                                 ":.*CancelImmediate/2"
+                                 ":.*CancelImmediateGetHostByAddr/2"
+                                 ":.*CancelLater/1"
+                                 ":.*FamilyUnspecified/2"
+                                 ":.*FamilyV6/2"
+                                 ":.*GetAddrInfoParallelLookups/1"
+                                 ":.*GetHostByAddrDestroy/2"
+                                 ":.*GetHostByNameCNAMENoData/2"
+                                 ":.*GetHostByNameDestroyAbsolute/2"
+                                 ":.*GetHostByNameDestroyRelative/2"
+                                 ":.*GetHostByNameParallelLookups/1"
+                                 ":.*HostAlias/2"
+                                 ":.*HostAliasMissing/2"
+                                 ":.*HostAliasMissingFile/2"
+                                 ":.*NotImplResponse/2"
+                                 ":.*RefusedResponse/2"
+                                 ":.*Resend/1"
+                                 ":.*RetryWithoutEDNS/2"
+                                 ":.*SearchDomains/2"
+                                 ":.*SearchDomainsBare/2"
+                                 ":.*SearchDomainsServFailOnAAAA/2"
+                                 ":.*SearchDomainsWithResentReply/1"
+                                 ":.*SearchHighNdots/2"
+                                 ":.*SearchNoDataThenFail/2"
+                                 ":.*SearchNoDataThenNoDataBare/2"
+                                 ":.*SearchNoDataThenSuccess/2"
+                                 ":.*ServFailResponse/2"
+                                 ":.*SimpleQuery/2"
+                                 ":.*SockCallback/2"
+                                 ":.*SockConfigureCallback/2"
+                                 ":.*SortListV4/2"
+                                 ":.*SortListV6/2"
+                                 ":.*ThirdServer/2"
+                                 ":.*TruncationRetry/1"
+                                 ":.*UnspecifiedFamilyCname6A4/2"
+                                 ":.*UnspecifiedFamilyV4/2"
+                                 ":.*UnspecifiedFamilyV6/2")))))
+                 #~()))))
+    (native-inputs
+     (list pkg-config))
+    (home-page "https://c-ares.haxx.se/")
+    (synopsis "C library for asynchronous DNS requests")
+    (description
+     "C-ares is a C library that performs DNS requests and name resolution
+asynchronously.  It is intended for applications which need to perform DNS
+queries without blocking, or need to perform multiple DNS queries in parallel.
+The primary examples of such applications are servers which communicate with
+multiple clients and programs with graphical user interfaces.")
+    (license (license:x11-style "https://c-ares.haxx.se/license.html"))))
 
-(define-deprecated/public-alias c-ares-for-node-lts
-  (@ (gnu packages dns) c-ares-for-node-lts))
+(define-public c-ares-for-node-lts
+  (hidden-package c-ares))
 
-(define-deprecated/public-alias c-ares-for-node-bootstrap
-  (@ (gnu packages dns) c-ares-for-node-bootstrap))
+(define-public c-ares-for-node-bootstrap
+  (hidden-package
+   (package
+     (inherit c-ares)
+     (version "1.18.1")
+     (source (origin
+               (method url-fetch)
+               (uri (string-append
+                     "https://c-ares.haxx.se/download/c-ares-" version
+                     ".tar.gz"))
+               (sha256
+                (base32
+                 "1kxviskwsaa7dcgscvssxa8ps88pdq7kq4z93gxvz7sam2l54z8s")))))))
 
-(define-deprecated/public-alias c-ares/cmake
-  (@ (gnu packages dns) c-ares/cmake))
+;; gRPC requires a c-ares built with CMake in order to get the .cmake modules.
+;; We can not build c-ares itself with CMake because that would introduce a
+;; circular dependency through nghttp2.
+;; XXX: It would be nice if we could extract the modules somehow and make them
+;; work with the "normal" c-ares package instead of building a whole new library.
+(define-public c-ares/cmake
+  (hidden-package
+   (package
+     (inherit c-ares)
+     (build-system cmake-build-system)
+     (arguments
+      `(;; XXX: Tests require name resolution (the normal variant runs no tests).
+        #:tests? #f)))))

gnu/packages/aidc.scm

@@ -370,7 +370,7 @@ This package includes the following programs:
            libjpeg-turbo
            perl
            python
-           v4l-utils))
+           v4l-utils-minimal))
     (propagated-inputs
      ;; These are in 'requires' field of .pc files.
      (list glib gtk+))

gnu/packages/algebra.scm

@@ -1,7 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2022, 2023, 2024, 2025 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2013, 2015, 2017, 2018, 2021 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2016-2026 Nicolas Goaziou <mail@nicolasgoaziou.fr>
+;;; Copyright © 2016-2025 Nicolas Goaziou <mail@nicolasgoaziou.fr>
 ;;; Copyright © 2014, 2018 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2016, 2018, 2019, 2021, 2023 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2017, 2020-2022 Efraim Flashner <efraim@flashner.co.il>
@@ -406,7 +406,7 @@ precision.")
 (define-public giac
   (package
     (name "giac")
-    (version "2.0.0-21")
+    (version "2.0.0-10")
     (source
      (origin
        (method url-fetch)
@@ -418,7 +418,7 @@ precision.")
               "https://www-fourier.ujf-grenoble.fr/~parisse/debian/dists/"
               "stable/main/source/giac_" version ".tar.gz"))
        (sha256
-        (base32 "1j6bip76hhqvycapf7xy26y0b8g5zzx4gwkfsr7bf6m2h71a2zry"))))
+        (base32 "1lzb0jjmkg5ml1qfl0m00qqng4sxgfqwrbq10gpkp4b301k2ckv1"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -458,7 +458,7 @@ precision.")
     (inputs
      ;; TODO: Unbundle "libmicropython.a".
      (list ao
-           fltk
+           fltk-1.3
            glpk
            gmp
            gsl

gnu/packages/android.scm

@@ -765,7 +765,7 @@ file system.")
        (sha256
         (base32 "0r3xwk8xsfxvmxyw3d57sy2i9by24g0l1jl40735jiac9mypcg7n"))))
     (build-system pyproject-build-system)
-    (propagated-inputs (list python-requests python-argcomplete python-urllib3
+    (inputs (list python-requests python-argcomplete python-urllib3
                   python-looseversion gnupg))
     (native-inputs (list python-setuptools python-wheel python-requests-cache
                          python-defusedxml))
@@ -773,7 +773,8 @@ file system.")
      (list $SSL_CERT_FILE))
     (arguments
      (list
-      #:test-backend #~'unittest
+      #:test-flags
+      #~(list "-k" "test_*")
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'patch-tests
@@ -792,7 +793,11 @@ file system.")
             (lambda _
               (substitute* "sdkmanager.py"
                 (("gpgv")
-                 (string-append #$(this-package-input "gnupg") "/bin/gpgv"))))))))
+                 (string-append #$(this-package-input "gnupg") "/bin/gpgv")))))
+          (replace 'check
+            (lambda* (#:key tests? test-flags #:allow-other-keys)
+              (when tests?
+                (apply invoke "python" "-m" "unittest" test-flags)))))))
     (home-page "https://gitlab.com/fdroid/sdkmanager")
     (synopsis "Replacement for Android sdkmanager written in Python")
     (description
@@ -1177,16 +1182,14 @@ for communicating with Xiaomi smart appliances over miIO and MIoT protocols.")
 (define-public fdroidserver
   (package
     (name "fdroidserver")
-    (version "2.4.3")
+    (version "2.4.2")
     (source
      (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://gitlab.com/fdroid/fdroidserver")
-              (commit version)))
-       (file-name (git-file-name name version))
+       (method url-fetch)
+       (uri (pypi-uri "fdroidserver" version))
        (sha256
-        (base32 "1745fqxr2qfrls4wr6x9w1262b9pxmw9yvzd9b71ya2qmj74q17n"))))
+        (base32
+         "06xybginrwi5c7bw000wz5s5hzi0aqrxskzwh8qc6wv463w2djax"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -1197,17 +1200,22 @@ for communicating with Xiaomi smart appliances over miIO and MIoT protocols.")
             (lambda _
               (setenv "HOME" "/tmp"))))))
     (propagated-inputs
-     (list python-platformdirs
-           python-androguard
+     (list python-androguard
            python-apache-libcloud
+           python-argcomplete
            python-asn1crypto
            python-clint
            python-defusedxml
+           python-docker
            python-gitpython
+           python-mwclient
            python-oscrypto
            python-paramiko
            python-pillow
+           python-platformdirs
            python-puremagic
+           python-pyasn1
+           python-pyasn1-modules
            python-pyyaml
            python-qrcode
            python-requests
@@ -1230,35 +1238,28 @@ main repository.")
 (define-public fdroidcl
   (package
     (name "fdroidcl")
-    (version "0.8.1")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/Hoverth/fdroidcl")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1bflahcsjarv4v6r61knl5gc5iydh1lwvqjgffhxr4pis4qfsqsa"))
-       ;; XXX: Reported upstream.
-       ;; See: <https://github.com/Hoverth/fdroidcl/pull/92>.
-       (patches (search-patches "fdroidcl-fix-tests.patch"))))
+    (version "0.7.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/mvdan/fdroidcl")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1s3fszlyyab9gbdrg52zcbafsb1mgb770skg7b3gj7f3pzfnra5n"))))
     (build-system go-build-system)
     (arguments
-     (list
-      #:install-source? #f
-      #:import-path "mvdan.cc/fdroidcl"))
-    (inputs
-     (list go-github-com-kr-pretty
-           go-github-com-pelletier-go-toml-v2
-           go-github-com-rogpeppe-go-internal
-           go-github-com-schollz-progressbar-v3))
-    (home-page "https://github.com/Hoverth/fdroidcl")
+     `(#:import-path "mvdan.cc/fdroidcl"
+       #:tests? #f                      ;requires internet access
+       #:install-source? #f))
+    (inputs (list go-github-com-kr-pretty go-github-com-schollz-progressbar-v3))
     (synopsis "F-Droid desktop client")
     (description
      "While the Android client integrates with the system with regular update
 checks and notifications, this is a simple command line client that talks to
 connected devices via ADB.")
+    (home-page "https://github.com/mvdan/fdroidcl")
     (license license:bsd-3)))
 
 (define-public emacs-fdroid
@@ -1386,7 +1387,6 @@ mounted via FUSE.")
        (uri (git-reference
              (url "https://github.com/anestisb/android-simg2img")
              (commit version)))
-       (file-name (git-file-name name version))
        (sha256
         (base32
          "0drwvqxbhajka580j93z8ldckhjlpr0i84nh20krdpxcp54xvldh"))))

gnu/packages/animation.scm

@@ -238,12 +238,12 @@ contains the graphical user interface for synfig.")
              (when tests?
                (invoke "./tests")))))))
     (native-inputs
-     (cons* gettext-minimal
-            `(,glib "bin")
-            perl
-            pkg-config
-            python-wrapper
-            (maybe-nasm)))
+     (list gettext-minimal
+           `(,glib "bin")
+           nasm
+           perl
+           pkg-config
+           python-wrapper))
     (inputs
      (list cairo
            curl

gnu/packages/anthy.scm

@@ -33,8 +33,9 @@
        ;; The URI does not appear to be easily guessable.  For
        ;; example, you cannot download version "9100g" simply
        ;; by replacing "9100h" in the URI.
-       (uri (string-append "https://ftp.jaist.ac.jp/pub/Linux/Gentoo/"
-                           "distfiles/31/anthy-9100h.tar.gz"))
+       (uri (list (string-append "https://ftp.jaist.ac.jp/pub/Linux/Gentoo/"
+                                 "distfiles/31/anthy-9100h.tar.gz")
+                  "https://osdn.dl.osdn.net/anthy/37536/anthy-9100h.tar.gz"))
        (sha256
         (base32 "0ism4zibcsa5nl77wwi12vdsfjys3waxcphn1p5s7d0qy1sz0mnj"))))
     (build-system gnu-build-system)

gnu/packages/apl.scm

@@ -30,26 +30,20 @@
   #:use-module (guix packages)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system trivial)
-  #:use-module (gnu packages algebra)
-  #:use-module (gnu packages base)
   #:use-module (gnu packages bash)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages gettext)
-  #:use-module (gnu packages gtk)
-  #:use-module (gnu packages image)
   #:use-module (gnu packages java)
   #:use-module (gnu packages maths)
   #:use-module (gnu packages pcre)
-  #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages readline)
-  #:use-module (gnu packages sqlite)
-  #:use-module (gnu packages xorg))
+  #:use-module (gnu packages sqlite))
 
 (define-public apl
-  (let ((revision 1977))
+  (let ((revision 1550))
     (package
       (name "apl")
-      (version (string-append "2.0.1-r" (number->string revision)))
+      (version (string-append "1.8-r" (number->string revision)))
       (source
        (origin
          (method svn-fetch)
@@ -58,18 +52,12 @@
                (revision revision)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "1llm1hqpfd71jrhd4pizhmvvca5wr18v8zqfajwmvjjxcmzfkvv1"))))
+          (base32 "1bgc3a09f35zrqq2irhm1hspppnxjqas0fmcw14hkc7910br9ip3"))))
       (build-system gnu-build-system)
       (home-page "https://www.gnu.org/software/apl/")
-      (native-inputs (list gettext-minimal which pkg-config))
       (inputs
        (list gettext-minimal
-             libxcb
-             fftw
              openblas
-             gsl
-             libpng
-             gtk+
              pcre2
              readline
              sqlite))
@@ -81,11 +69,15 @@
              #~(modify-phases %standard-phases
                  (add-before 'configure 'fix-configure
                    (lambda _
-                     (substitute* "configure"
-                       ;; Manually set the SVN revision, since the directory
-                       ;; is unversioned and we know it anyway.
-                       (("\\$apl_ARCHIVE_SVNINFO")
-                        #$(number->string revision))))))))
+                     (substitute* "buildtag.sh"
+                       ;; Don't exit on failed SVN-related calls.
+                       (("^ +return 0\n") "")
+                       ;; Manually set the SVN revision, since the directory is
+                       ;; unversioned and we know it anyway.
+                       (("^SVNINFO=.*")
+                        (string-append "SVNINFO=" #$(number->string revision) "\n"))
+                       ;; Requires running ‘svn info’ on a versioned directory.
+                       (("\\\\\"\\$ARCHIVE_SVNINFO\\\\\"") "\\\"\\\"")))))))
       (synopsis "APL interpreter")
       (description
        "GNU APL is a free interpreter for the programming language APL.  It is

gnu/packages/appimage.scm

@@ -19,11 +19,9 @@
 (define-module (gnu packages appimage)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (gnu packages base)
-  #:use-module (gnu packages c)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages file-systems)
   #:use-module (gnu packages linux)
-  #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages)
   #:use-module (guix build-system gnu)
   #:use-module (guix gexp)
@@ -32,9 +30,9 @@
   #:use-module (guix utils))
 
 (define-public appimage-type2-runtime
-  (let ((revision "1")
+  (let ((revision "0")
         ;; No releases, just the latest commit.
-        (commit "caf24f9f712084686bfc24a70b75e50df0aefb9c"))
+        (commit "47b665594856b4e8928f8932adcf6d13061d8c30"))
     (package
       (name "appimage-type2-runtime")
       (version (git-version "continuous" revision commit))
@@ -46,16 +44,16 @@
                 (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "17z0byws3dp375wcyq5xwy5npqy7hslqw21n677dp38z4f940nzv"))))
+          (base32 "0954crhlbapxis96g1s0vfpf78ybr64zvjalak387ksxj560g44x"))))
       (build-system gnu-build-system)
       (arguments
        (list
         #:tests? #f                     ; No tests
         #:make-flags
-        #~(list "-Csrc/runtime" "runtime"
+        #~(list "-Csrc/runtime" "runtime-fuse3"
                 (string-append "CC=" #$(cc-for-target))
                 (string-append
-                 "CFLAGS=" "-I" #$(this-package-input "fuse") "/include/fuse3/"
+                 "CFLAGS=" "-I" #$(this-package-input "fuse") "/include/fuse/"
                  " -DGIT_COMMIT='\"" "guix-" #$version "\"'"
                  " -D_FILE_OFFSET_BITS=64"
                  " -static"
@@ -66,22 +64,17 @@
           (ice-9 binary-ports))
         #:phases
         #~(modify-phases %standard-phases
-            (add-after 'unpack 'use-pkgconfig-flags
-              (lambda _
-                (substitute* "src/runtime/Makefile"
-                  (("-lmimalloc")
-                   "$(pkg-config --cflags mimalloc)"))))
             (delete 'configure)
             (replace 'install
               (lambda _
-                (install-file "src/runtime/runtime"
+                (install-file "src/runtime/runtime-fuse3"
                               (string-append #$output "/bin"))))
             ;; Must be after all elf reliant phases.  Used to identify the
             ;; executable as an AppImage as per the specification.
             (add-after 'make-dynamic-linker-cache 'set-magic-bytes
               (lambda _
                 (let ((port (open (string-append #$output
-                                                 "/bin/runtime")
+                                                 "/bin/runtime-fuse3")
                                   (logior O_WRONLY))))
                   (seek port 8 SEEK_SET)
                   (put-bytevector port #vu8(#x41 #x49 #x02))
@@ -91,12 +84,9 @@
               (this-package-input "fuse")
               (gexp-input (this-package-input "zstd") "static")
               (gexp-input (this-package-input "zlib") "static"))))
-      (native-inputs (list pkg-config))
       ;; Only needed at build time.
-      (inputs (list `(,fuse "out")
-                    `(,fuse "static")
-                    mimalloc
-                    squashfuse-for-appimage
+      (inputs (list squashfuse-for-appimage
+                    fuse-for-appimage
                     `(,zstd "static")
                     `(,zlib "static")))
       (synopsis "Runtime for executing AppImages")

gnu/packages/apr.scm

@@ -34,14 +34,14 @@
 (define-public apr
   (package
     (name "apr")
-    (version "1.7.6")
+    (version "1.7.4")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://apache/apr/apr-"
                                  version ".tar.bz2"))
              (sha256
               (base32
-               "0cpbbmng9ir8rjl9nxwljkzmrkpk4b1nsj8vg4ssfpapsa90s0s9"))
+               "0xsmqgjiyw3s6va5dm86djnjzg9r0qc1zsldwz4sd8pkhglqsr7w"))
              (patches
               (search-patches "apr-skip-getservbyname-test.patch"))
              (patch-flags '("-p0"))))

gnu/packages/assembly.scm

@@ -2,7 +2,7 @@
 ;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2013, 2015 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2013 Andreas Enge <andreas@enge.fr>
-;;; Copyright © 2016, 2020, 2021, 2025, 2026 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2020, 2021, 2025 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2017–2022 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2019 Guy Fleury Iteriteka <hoonandon@gmail.com>
 ;;; Copyright © 2019, 2022, 2024 Andy Tai <atai@atai.org>
@@ -43,7 +43,6 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (guix gexp)
-  #:use-module (guix utils)
   #:use-module (gnu packages)
   #:use-module (gnu packages admin)
   #:use-module (gnu packages autotools)
@@ -249,16 +248,6 @@ complex.  It supports all currently known x86 architectural extensions, and
 has strong support for macros.")
     (license license:bsd-2)))
 
-(define* (maybe-nasm #:optional
-                     (system (or (%current-target-system)
-                                 (%current-system))))
-  ;; For some packages nasm is only needed when compiling to/for x86/x86_64.
-  (if (target-x86? system)
-      (list nasm)
-      '()))
-
-(export maybe-nasm)
-
 (define-public yasm
   (package
     (name "yasm")

gnu/packages/audio.scm

@@ -51,7 +51,7 @@
 ;;; Copyright © 2024 Nikita Domnitskii <nikita@domnitskii.me>
 ;;; Copyright © 2024 Roman Scherer <roman@burningswell.com>
 ;;; Copyright © 2024 Sughosha <sughosha@disroot.org>
-;;; Copyright © 2025, 2026 Junker <dk@junkeria.club>
+;;; Copyright © 2025 Junker <dk@junkeria.club>
 ;;; Copyright © 2025 Sughosha <sughosha@disroot.org>
 ;;; Copyright © 2025 Andrew Wong <wongandj@icloud.com>
 ;;; Copyright © 2025 Kjartan Oli Agustsson <kjartanoli@outlook.com>
@@ -62,8 +62,6 @@
 ;;; Copyright © 2026 Luis Guilherme Coelho <lgcoelho@disroot.org>
 ;;; Copyright © 2026 Noé Lopez <noelopez@free.fr>
 ;;; Copyright © 2026 Carlos Durán Domínguez <wurt@wurt.eu>
-;;; Copyright © 2026 Daniel Martins <email@danielfm.me>
-;;; Copyright © 2026 Artyom V. Poptsov <poptsov.artyom@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -128,7 +126,6 @@
   #:use-module (gnu packages linphone)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages llvm)
-  #:use-module (gnu packages logging)
   #:use-module (gnu packages machine-learning)
   #:use-module (gnu packages man)
   #:use-module (gnu packages maths)
@@ -196,45 +193,6 @@
   #:use-module (srfi srfi-26)
   #:use-module (ice-9 match))
 
-(define-public adplug
-  (package
-    (name "adplug")
-    (version "2.4")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/adplug/adplug")
-                    (commit (string-append "adplug-" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "0l31ya42g3q7ry2m0y5djgjb9ax8ciy8jn86252vdjkjswwqgscd"))))
-    (build-system cmake-build-system)
-    (arguments
-     (list #:configure-flags
-           #~(list "-DBUILD_SHARED_LIBS=ON")
-           #:modules
-           '((guix build cmake-build-system)
-             (guix build utils)
-             (srfi srfi-26))                 ;for cute
-           #:phases
-           #~(modify-phases %standard-phases
-               (add-after 'install 'install-headers
-                 (lambda _
-                   (for-each (cute install-file <>
-                                  (string-append #$output "/include/adplug"))
-                             (find-files "../source/src" "\\.h$")))))))
-    (propagated-inputs
-     (list libbinio))
-    (home-page "https://adplug.github.io/")
-    (synopsis "AdLib sound player library")
-    (description
-     "AdPlug is a hardware independent AdLib sound player library, mainly
-written in C++.  AdPlug plays sound data, originally created for the AdLib
-(OPL2/3) audio board, on top of an OPL2/3 emulator or by using the real
-hardware.  No OPL2/3 chips are required for playback.")
-    (license license:lgpl2.1+)))
-
 (define-public opensles
   (package
     (name "opensles")
@@ -1251,7 +1209,7 @@ PulseAudio clients, featuring:
 (define-public ardour
   (package
     (name "ardour")
-    (version "9.2")
+    (version "9.1")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1268,7 +1226,7 @@ PulseAudio clients, featuring:
 namespace ARDOUR { const char* revision = \"" version "\" ; const char* date = \"\"; }")))))
               (sha256
                (base32
-                "14s6cq3x7l7b682ah9k8cdr6plfirlgm882dc2nm51lxwl91zcfd"))
+                "00bramm8dq0ihr376n7l9rg0mjzxmzw6lxvsbsdlrdsimfwsy16p"))
               (file-name (git-file-name name version))))
     (build-system waf-build-system)
     (arguments
@@ -3471,7 +3429,7 @@ from being able to mix multiple JACK audio streams.")
 (define-public pipemixer
   (package
     (name "pipemixer")
-    (version "0.5.0")
+    (version "0.4.1")
     (source
      (origin
       (method git-fetch)
@@ -3480,8 +3438,19 @@ from being able to mix multiple JACK audio streams.")
             (commit (string-append "v" version))))
       (file-name (git-file-name name version))
       (sha256
-       (base32 "104h2zdhqx5gdddnb7v7rhrflznh4v7d4g3s6vk2mxwf938zgm72"))))
+       (base32 "08ji4lg24flzi6g3yaavfq8hz3kr98q2ripk5m4qk9z172qxbbc9"))))
     (build-system meson-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'fix-pw-device
+            (lambda _
+              (substitute* "src/pw/device.c"
+                ;; TODO: Report upstream:
+                ;; ../source/src/pw/device.c:328:80: error: expected
+                ;; ‘;’ before ‘{’ token
+                (("iter\\) \\{") "iter); {")))))))
     (native-inputs
      (list pkg-config))
     (inputs
@@ -3734,44 +3703,6 @@ compensation, (de)interleaving, and byte-swapping
     ;; original developer.
     (license license:expat)))
 
-(define-public rtcqs
-  (package
-    (name "rtcqs")
-    (version "0.6.7")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://codeberg.org/rtcqs/rtcqs")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1kc3niyaq4m8di68832pgfb1b0m54q5gm68dwlzwwilgxi61ifzc"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:tests? #f ;no test suite
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'remove-gui
-            (lambda _
-              (substitute* "pyproject.toml"
-                (("\"FreeSimpleGUI\",?")
-                 "")
-                (("rtcqs_gui = \"rtcqs\\.rtcqs_gui:main\"")
-                 ""))
-              (delete-file "src/rtcqs/rtcqs_gui.py")
-              (delete-file "src/rtcqs/rtcqs_qt_gui.py"))))))
-    (native-inputs (list python-setuptools))
-    (home-page "https://codeberg.org/rtcqs/rtcqs")
-    (synopsis "Linux audio real-time performance analyzer")
-    (description
-     "rtcqs analyzes a Linux system to detect possible bottlenecks that could
-have a negative impact on real-time audio performance.  It checks kernel
-configuration, IRQ priorities, CPU governor, swappiness, and other settings
-relevant to low-latency audio work.")
-    (license license:expat)))
-
 (define-public rtosc
   (package
     (name "rtosc")
@@ -3881,58 +3812,6 @@ provided by Pipewire.")
 cross-platform audio input/output stream library.")
     (license license:expat)))
 
-(define-public python-pyroomacoustics
-  (package
-    (name "python-pyroomacoustics")
-    (version "0.10.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/LCAV/pyroomacoustics")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0546506lg93nrybvilc4wgrgvn317w9zxv2jwikhpfy1i0qyrnkk"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-flags
-      #~(list
-         ;; Want to download data from the internet:
-         "--ignore"
-         "pyroomacoustics/directivities/tests/test_sofa_directivities.py"
-         "--ignore"
-         "pyroomacoustics/datasets/tests/test_download_uncompress.py"
-         ;; May fail because of slight numerical imprecision.
-         "--ignore"
-         "pyroomacoustics/experimental/tests/test_measure_rt60.py")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'build 'set-extra-include-paths
-            (lambda* (#:key inputs #:allow-other-keys)
-              (setenv "CPLUS_INCLUDE_PATH"
-                      (string-append
-                       (search-input-directory inputs "include/eigen3")
-                       ":"
-                       (or (getenv "CPLUS_INCLUDE_PATH") ""))))))))
-    (propagated-inputs (list python-scipy))
-    (native-inputs (list eigen
-                         pybind11
-                         python-cython
-                         python-matplotlib
-                         python-numpy
-                         python-pytest
-                         python-setuptools
-                         python-sofa))
-    (inputs (list nanoflann))
-    (home-page "https://github.com/LCAV/pyroomacoustics")
-    (synopsis "Python library for room acoustics")
-    (description "@code{pyroomacoustics} is a framework for simulating the
-acustic behaviour of rooms, such as computing the impulse response using
-different simulation methods.")
-    (license license:expat)))
-
 (define-public python-pulsectl
   (package
     (name "python-pulsectl")
@@ -4037,40 +3916,6 @@ to send and receive OSC messages using a nice and simple Python API.  Also
 included are the command line utilities @code{send_osc} and @code{dump_osc}.")
     (license license:lgpl2.1+)))
 
-(define-public python-sofa
-  (package
-    (name "python-sofa")
-    (version "0.2.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/spatialaudio/python-sofa/")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0n6mdck2dawfm6napqhhxi8gjyvs6121pblcr7zjl37a8ldqvg29"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:tests? #f ;No tests
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'remove-wrong-dependency
-            (lambda _
-              (substitute* "setup.py"
-                (("'datetime'")
-                 "")))))))
-    (propagated-inputs (list python-netcdf4 python-numpy python-scipy))
-    (native-inputs (list python-setuptools))
-    (home-page "https://github.com/spatialaudio/python-sofa/")
-    (synopsis
-     "Python @acronym{Spatially Oriented Format for Acoustics, SOFA} API")
-    (description
-     "Python API for @acronym{Spatially Oriented Format for Acoustics, SOFA} files
-as specified in @url{https://www.sofaconventions.org, SOFA conventions}.")
-    (license license:expat)))
-
 (define-public python-soundfile
   (package
     (name "python-soundfile")
@@ -4581,33 +4426,6 @@ This includes device enumeration and initialization, file loading, and
 streaming.")
     (license license:expat)))
 
-(define-public wp-notifyd
-  (package
-    (name "wp-notifyd")
-    (version "1.1.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/LDAP/wp-notifyd")
-              (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1nkndz0li15maf0dc9x631p0dr8085wzz5358552wljv7chywrza"))))
-    (build-system meson-build-system)
-    (arguments
-     (list #:tests? #f)) ;there are no tests
-    (inputs (list libnotify
-                  wireplumber-minimal
-                  pipewire
-                  spdlog))
-    (native-inputs (list pkg-config))
-    (home-page "https://github.com/LDAP/wp-notifyd")
-    (synopsis "Notification daemon for Wireplumber")
-    (description "@command{wp-notifyd} is a lightweight notification daemon for
-@dfn{WirePlumber} (the session and policy manager for PipeWire).")
-    (license license:expat)))
-
 (define-public pa-notify
   (package
     (name "pa-notify")
@@ -5012,42 +4830,6 @@ using Guix System.")
     ;; GNU Library (not Lesser) General Public License.
     (license license:lgpl2.0+)))
 
-(define-public hiir
-  (let ((commit "4a9a1e67fa6f8ce7688e1c0c8a2b017cecd206a3")
-        (revision "0"))
-    (package
-      (name "hiir")
-      (version (git-version "0" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-               (url "https://github.com/LostRobotMusic/hiir")
-               (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "1wzlg0di768mzcik6fij4pd6dnpmbw8q236h478c057d10qfp44g"))))
-      (build-system copy-build-system)
-      (arguments
-       (list
-        #:install-plan
-        #~`(("." "/include/hiir"))))
-      (home-page "https://github.com/LostRobotMusic/hiir")
-      (synopsis "Header-only version of Laurent de Soras's HIIR 1.40 library")
-      (description
-       "This package provides a header-only version of the
-@uref{http://ldesoras.free.fr/prod.html#src_hiir, HIIR library by Laurent De
-Soras}, updated to version 1.40.  HIIR is a C++ library for changing the
-sampling rate of a signal by a factor two, in both directions (upsampling and
-downsampling), obtaining two signals with a π/2 phase difference (Hilbert
-transform).  It is made of a two-path polyphase IIR filter, implemented with
-FPU, 3DNow!, SSE, SSE2, AVX, AVX-512 and NEON instruction sets.
-
-This package contains the same as the original library, except with the
-contents of one source file moved into a header file (and set as inline) to
-make the library header-only, and with the test folder removed.")
-      (license license:wtfpl2))))
-
 (define-public redumper
   (package
     (name "redumper")
@@ -6708,23 +6490,22 @@ on the ALSA software PCM plugin.")
 (define-public snd
   (package
     (name "snd")
-    (version "26.3")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "https://ccrma.stanford.edu/software/snd/snd-"
-                           version ".tar.gz"))
-       (sha256
-        (base32
-         "1d573mjlrn9rhl9g0a3d1rkar34q60ln8mwlbibfalpn8lsz59a0"))))
+    (version "25.2")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "ftp://ccrma-ftp.stanford.edu/pub/Lisp/"
+                                  "snd-" version ".tar.gz"))
+              (sha256
+               (base32
+                "0fgxqk0byxdj6059mb9d5qic2dqjabz49j0szsrn2y3c9nz6iyq4"))))
     (build-system gnu-build-system)
     (arguments
      (list
-      #:tests? #f                       ; No tests.
-      #:out-of-source? #f               ; Required by 'install-doc'.
+      #:tests? #f                       ; no tests
+      #:out-of-source? #f               ; for the 'install-doc' phase
       #:configure-flags
-      #~(let
-            ((docdir (string-append #$output "/share/doc/snd-" #$version)))
+      #~(let ((docdir (string-append #$output "/share/doc/"
+                                     #$name "-" #$version)))
           (list "--with-alsa"
                 "--with-jack"
                 "--with-gmp"
@@ -6732,20 +6513,18 @@ on the ALSA software PCM plugin.")
                 (string-append "--with-doc-dir=" docdir)))
       #:phases
       #~(modify-phases %standard-phases
-          (add-after 'install 'install-s7-h
+          (add-after 'install 'install-s7
             (lambda _
-              (install-file "s7.h" (string-append #$output
-                                                  "/include"))))
+              (install-file "s7.h" (string-append #$output "/include"))))
           (add-after 'install 'install-doc
             (lambda _
-              (let
-                  ((docdir (string-append #$output "/share/doc/snd-"
-                                          #$version)))
+              (let ((doc (string-append #$output "/share/doc/"
+                                        #$name "-" #$version)))
                 (for-each
                  (lambda (f)
-                   (install-file f docdir))
+                   (install-file f doc))
                  (find-files "." "\\.html$"))
-                (copy-recursively "pix" (string-append docdir "/pix"))))))))
+                (copy-recursively "pix" (string-append doc "/pix"))))))))
     (native-inputs
      (list pkg-config))
     (inputs
@@ -6764,16 +6543,13 @@ on the ALSA software PCM plugin.")
            timidity++
            vorbis-tools
            wavpack))
-    (home-page "https://ccrma.stanford.edu/software/snd/snd/snd.html")
     (synopsis "Sound editor")
+    (home-page "https://ccrma.stanford.edu/software/snd/")
     (description
      "Snd is a sound editor modelled loosely after Emacs.  It can be
 customized and extended using either the s7 Scheme implementation (included in
 the Snd sources), Ruby, or Forth.")
-    (license
-     ;; INFO: pkgsrc classifies this as `esdl-license', a license not included
-     ;; in OSI or FSF lists, despite being similar to ISC.
-     (license:non-copyleft "file://COPYING"))))
+    (license (license:non-copyleft "file://COPYING"))))
 
 (define-public libspecbleach
   (package
@@ -7208,6 +6984,32 @@ developing fully accurate DirectX Audio runtime libraries.")
            license:expat
            license:public-domain))))
 
+(define-public gnaural
+  (package
+    (name "gnaural")
+    (version "20110606")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "mirror://sourceforge/gnaural/Gnaural/gnaural_"
+                           version ".tar.xz"))
+       (sha256
+        (base32
+         "1gq519c0imsh57zklyi0f8h64l3ai48lh672c834470z8c6kvbfi"))))
+    (build-system gnu-build-system)
+    (inputs
+     (list alsa-lib gtk+-2 libsndfile portaudio))
+    (native-inputs
+     (list pkg-config))
+    (home-page "https://gnaural.sourceforge.net/")
+    (synopsis "Binaural beat synthesizer")
+    (description "Gnaural is a programmable auditory binaural beat synthesizer
+intended to be used for brainwave entrainment.  Gnaural supports creation of
+binaural beat tracks of different frequencies and exporting of tracks into
+different audio formats.  Gnaural can also be linked over the internet with
+other Gnaural instances, allowing synchronous sessions between many users.")
+    (license license:gpl2+)))
+
 (define-public darkice
   (package
     (name "darkice")
@@ -7418,7 +7220,6 @@ as is the case with audio plugins.")
                                        (find-files "bin")))))))))
     (inputs
      (list alsa-lib
-           bash-minimal
            ffmpeg
            fluidsynth
            file
@@ -7476,8 +7277,8 @@ default and preferred audio driver but also supports native drivers like ALSA.")
 
 ;;; This package variant tracks the latest in-development 2.6 release.
 (define-public carla-2.6
-  (let ((commit "294a80145e39c0755ab9073d90fd8b9524fbfc84")
-        (revision "1"))
+  (let ((commit "aa400535b31c67f4b6c1b28e6e20e4d4f82111a3")
+        (revision "0"))
     (package
       (inherit carla)
       (name "carla")
@@ -7491,12 +7292,7 @@ default and preferred audio driver but also supports native drivers like ALSA.")
            (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "053yfwf9l9vqvq95c354by6nm8ym0wgkv3fr1434x5w9n1344z0z"))))
-      (inputs
-       (modify-inputs (package-inputs carla)
-         (replace "python-pyqt" python-pyqt-6)
-         (replace "qtbase" qtbase)
-         (replace "qtwayland" qtwayland))))))
+          (base32 "0cnj2sgr60f5h6wdfmihc214wf3n74686sipl3iyzmylqrcyhbjn")))))))
 
 ;; This source is a fork of vst3sdk with the documentation and VSTGUI
 ;; submodules removed and a dummy `meson.build` file that just lists all
@@ -8137,16 +7933,7 @@ Icecast server.")
            (lambda _
              (substitute* "misc.c"
                (("#include <stdio.h>\n" all)
-                (string-append all "#include <string.h>\n")))
-             (substitute* "wavsubs.c"
-               (("#include \"wavsubs.h\"\n" all)
-                (string-append all "#include <stdlib.h>")))
-             (substitute* "wavfile.c"
-               (("#include \"wavsubs.h\"\n" all)
-                (string-append all "#include <stdlib.h>")))
-             (substitute* "generator.c"
-               (("#include \"wavsubs.h\"\n" all)
-                (string-append all "#include <stdlib.h>")))))
+                (string-append all "#include <string.h>\n")))))
          (delete 'configure)
          (replace 'install
            (lambda* (#:key make-flags outputs #:allow-other-keys)
@@ -8158,8 +7945,7 @@ Icecast server.")
     (inputs
      (list ncurses))
     (native-inputs
-     `(("gcc" ,gcc-9)
-       ("groff" ,groff-minimal)         ; for nroff
+     `(("groff" ,groff-minimal)         ; for nroff
        ("util-linux" ,util-linux)))     ; for col
     (home-page "https://github.com/bleskodev/siggen")
     (synopsis "Signal generation tools")
@@ -8257,7 +8043,6 @@ Home Page}.")
              (commit version)
              ;; For test files.
              (recursive? #true)))
-       (file-name (git-file-name name version))
        (sha256
         (base32 "065x43hx670rjrclxi4hiqxscllb16v9s7myjvg7rd5pd3y0k7sg"))))
     (build-system pyproject-build-system)

gnu/packages/aux-files/linux-libre/6.12-riscv.conf

@@ -1989,7 +1989,7 @@ CONFIG_SCSI_LOWLEVEL=y
 # CONFIG_SCSI_DEBUG is not set
 # CONFIG_SCSI_PMCRAID is not set
 # CONFIG_SCSI_PM8001 is not set
-CONFIG_SCSI_VIRTIO=m
+# CONFIG_SCSI_VIRTIO is not set
 # CONFIG_SCSI_DH is not set
 # end of SCSI device support
 

gnu/packages/backup.scm

@@ -547,7 +547,7 @@ remain fully idle, saving power and producing less noise.")
          "0miklk4bqblpyzh1bni4x6lqn88fa8fjn15x1k1n8bxkx60nlymd"))))
     (build-system gnu-build-system)
     (inputs
-     (list librsync))
+     (list librsync-0.9))
     (arguments
      `(#:make-flags `("CFLAGS=-fcommon"
                       ,(string-append "PREFIX=" (assoc-ref %outputs "out"))
@@ -893,7 +893,7 @@ is like a time machine for your data.")
 (define-public restic
   (package
     (name "restic")
-    (version "0.18.1")
+    (version "0.17.3")
     (source
      (origin
        (method git-fetch)
@@ -902,7 +902,7 @@ is like a time machine for your data.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0gxhknn022bwg2s8hababqg3vjkzflq59vr67y7r1c8fjnlsgf4l"))))
+        (base32 "1wsgq7f0bfi0i5iiwcc3hlf2lhxcnz3zfs8p8bc6l913r9hvyg1x"))))
     (build-system go-build-system)
     (arguments
      (list
@@ -911,18 +911,15 @@ is like a time machine for your data.")
       #:import-path "github.com/restic/restic/cmd/restic"
       #:unpack-path "github.com/restic/restic"
       #:embed-files #~(list "children" "nodes" "text")
+      #:test-flags
+      ;; Python is required.
+      #~(list "-skip" "TestStdinFromCommand|TestStdinFromCommandNoOutput")
       #:test-subdirs #~(list "../../...")
       #:phases
       #~(modify-phases %standard-phases
-          (add-after 'unpack 'fix-python-path
-            (lambda* (#:key inputs unpack-path #:allow-other-keys)
-              (with-directory-excursion (string-append "src/" unpack-path)
-                (substitute* "cmd/restic/cmd_backup_integration_test.go"
-                  (("python")
-                   (search-input-file inputs "/bin/python3"))))))
           (add-after 'install 'install-docs
-            (lambda* (#:key unpack-path #:allow-other-keys)
-              (with-directory-excursion (string-append "src/" unpack-path)
+            (lambda* (#:key import-path #:allow-other-keys)
+              (with-directory-excursion (string-append "src/" import-path)
                 (let* ((man "/share/man")
                        (man-section (string-append man "/man")))
                   ;; Install all the man pages to "out".
@@ -945,12 +942,12 @@ is like a time machine for your data.")
            go-github-com-cenkalti-backoff-v4
            go-github-com-cespare-xxhash-v2
            go-github-com-elithrar-simple-scrypt
-           ;; go-github-com-go-ole-go-ole       ;Windows only
+           ;; go-github-com-go-ole-go-ole ;windows only
            go-github-com-google-go-cmp
            go-github-com-hashicorp-golang-lru-v2
            go-github-com-klauspost-compress
-           ;; go-github-com-microsoft-go-winio  ;Windows only
            go-github-com-minio-minio-go-v7
+           go-github-com-minio-sha256-simd
            go-github-com-ncw-swift-v2
            go-github-com-peterbourgon-unixtransport
            go-github-com-pkg-errors
@@ -970,7 +967,6 @@ is like a time machine for your data.")
            go-golang-org-x-text
            go-golang-org-x-time
            go-google-golang-org-api
-           python-minimal
 
            ;; XXX: These packages have to be bootstrapped to break cycle with
            ;; go-google-golang-org-grpc.

gnu/packages/benchmark.scm

@@ -13,8 +13,7 @@
 ;;; Copyright © 2021 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2022 Tomasz Jeneralczyk <tj@schwi.pl>
 ;;; Copyright © 2024 Nicolas Graves <ngraves@ngraves.fr>
-;;; Copyright © 2025-2026 Artyom V. Poptsov <poptsov.artyom@gmail.com>
-;;; Copyright © 2026 Sughosha <sughosha@disroot.org>
+;;; Copyright © 2025 Artyom V. Poptsov <poptsov.artyom@gmail.com>
 ;;; Copyright © 2023 Advanced Micro Devices, Inc.
 ;;;
 ;;; This file is part of GNU Guix.
@@ -42,7 +41,6 @@
   #:use-module (guix amd-gpu)
   #:use-module (guix search-paths)
   #:use-module (guix build-system cmake)
-  #:use-module (guix build-system qt)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system python)
   #:use-module (guix build-system pyproject)
@@ -680,26 +678,20 @@ the user is too low.  To raise such limit on a Guix System, refer to
          "0ifnw8vnkcgrksx7g5d9ii4kjppqnk32lvrybdybmibyvag6zfdc"))))
     (build-system gnu-build-system)
     (arguments
-     (list #:tests? #f                      ; no tests
-           #:make-flags
-           #~(list "CFLAGS=-g -O2 -Wno-error=implicit-function-declaration"
-                   (string-append "CC=" #$(cc-for-target)))
-           #:phases
-           #~(modify-phases %standard-phases
-               (add-after 'unpack 'fix-broken-makefile
-                 (lambda _
-                   ;; Remove erroneous "-lm" target
-                   (substitute* "Makefile"
-                     (("hackbench.o -lm") "hackbench.o"))))
-               (delete 'configure)
-               (replace 'install
-                 (lambda _
-                   (install-file "interbench"
-                                 (string-append #$output "/bin"))
-                   (install-file "interbench.8"
-                                 (string-append #$output
-                                                "/share/man/man8")))))))
-    (native-inputs (list gcc-10))
+     `(#:tests? #f                      ; no tests
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'fix-broken-makefile
+           (lambda _
+             ;; Remove erroneous "-lm" target
+             (substitute* "Makefile"
+               (("hackbench.o -lm") "hackbench.o"))))
+         (delete 'configure)
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let ((out (assoc-ref outputs "out")))
+               (install-file "interbench" (string-append out "/bin"))
+               (install-file "interbench.8" (string-append out "/share/man/man8"))))))))
     (home-page "http://users.on.net/~ckolivas/interbench/")
     (synopsis "Interactivity benchmark")
     (description "interbench is designed to benchmark interactivity on Linux.
@@ -738,7 +730,7 @@ and options.  With careful benchmarking, different hardware can be compared.")
 (define-public kdiskmark
   (package
     (name "kdiskmark")
-    (version "3.2.0")
+    (version "3.1.4")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -747,13 +739,14 @@ and options.  With careful benchmarking, different hardware can be compared.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "161yyy4fcy5bnzhbcd7p90nlcslcsfp7n3m3bz9bygch7bdjw46g"))))
-    (build-system qt-build-system)
+                "1x8vd6swmf0i7f6m6wl2154n6plx8jkmcqfq6zxbdy255f1da74c"))))
+    (build-system cmake-build-system)
     (arguments
      (list
-      #:qtbase qtbase
       #:configure-flags
-      #~(list (string-append "-DPOLKITQT-1_INSTALL_DIR=" #$output))
+      ;; Drop runtime dependency on KDE's KFAuth.
+      #~(list "-DPERFORM_PAGECACHE_CLEARING_USING_KF5AUTH=no"
+              (string-append "-DPOLKITQT-1_INSTALL_DIR=" #$output))
       #:tests? #f                       ;no test suite
       #:phases
       #~(modify-phases %standard-phases
@@ -766,10 +759,10 @@ and options.  With careful benchmarking, different hardware can be compared.")
             (lambda _
               (rmdir "src/singleapplication")
               (symlink #$(package-source
-                          (this-package-input "single-application"))
+                          (this-package-input "single-application-qt5"))
                        "src/singleapplication"))))))
-    (native-inputs (list extra-cmake-modules qttools))
-    (inputs (list fio polkit-qt6 single-application qtwayland))
+    (native-inputs (list extra-cmake-modules qttools-5))
+    (inputs (list fio polkit-qt qtbase-5 single-application-qt5))
     (home-page "https://github.com/JonMagon/KDiskMark")
     (synopsis "Simple disk benchmark tool")
     (description "KDiskMark is an HDD and SSD benchmark tool.  KDiskMark
@@ -951,20 +944,7 @@ configurable through a set of options.")
       #~(list (string-append
                "CC=" #$(this-package-input "openmpi") "/bin/mpicc")
               (string-append
-               "CXX=" #$(this-package-input "openmpi") "/bin/mpicxx"))
-      #:phases
-      #~(modify-phases %standard-phases
-          ;; OSU installs its binaries to /libexec. Have a symlink in /bin to
-          ;; improve user experience.
-          (add-after 'install 'symlink-binaries-in-bin
-            (lambda _
-              (mkdir-p (string-append #$output "/bin"))
-              (for-each (lambda (file)
-                          (symlink file
-                                   (string-append #$output "/bin/"
-                                                  (basename file))))
-                        (find-files (string-append #$output
-                                                   "/libexec"))))))))
+               "CXX=" #$(this-package-input "openmpi") "/bin/mpicxx"))))
     (home-page "https://mvapich.cse.ohio-state.edu/benchmarks/")
     (synopsis "Benchmarking suite from the MVAPICH project")
     (description

gnu/packages/bioinformatics.scm

@@ -913,7 +913,7 @@ suite native in R.")
 (define-public r-bpcells
   (package
     (name "r-bpcells")
-    (version "0.3.1")
+    (version "0.3.0")
     (source
      (origin
        (method git-fetch)
@@ -922,7 +922,7 @@ suite native in R.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0yqgcajq83g25mznwcngaw7pi6vcqxqdnynpgb95yci57k3wrp6j"))
+        (base32 "12h1di45fg06nhsliii7v0h1z567pkpis1xm4ar1qr8ns1n8iljw"))
        (modules '((guix build utils)))
        (snippet
         '(delete-file-recursively "r/src/vendor/highway"))))
@@ -931,15 +931,13 @@ suite native in R.")
     (arguments
      (list
       #:phases
-      `(modify-phases %standard-phases
+      '(modify-phases %standard-phases
          (add-after 'unpack 'chdir
-           (lambda _ (chdir "r")))
-         ,@(if (target-x86-32?)
-               '((add-after 'chdir 'require-sse2
-                   ;; This avoids falling back to the scalar backend in
-                   ;; highway, which fails to build.
-                   (lambda _ (setenv "CFLAGS" "-msse2"))))
-               '()))))
+           (lambda _
+             (substitute* "r/configure"
+               (("tools/hwy-test.cpp" m)
+                (string-append m " $HWY_LIBS $HWY_CFLAGS")))
+             (chdir "r"))))))
     (propagated-inputs
      (list r-dplyr
            r-ggplot2
@@ -4899,29 +4897,26 @@ relying on a complex dependency tree.")
 (define-public biosoup
   (package
     (name "biosoup")
-    (version "0.11.0")
+    (version "0.10.0")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/rvaser/biosoup")
-             (commit version)))
+             ;; Corresponds to version 0.10.0
+             (commit "38181f09854ff42cbd9632200a2ec9fb37a4b7b6")))
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "0vn1hj3h152iwahnrzghqll34qaphchi07klb3j70vgc248micbz"))))
+         "02hvyka703zagx0nvv2yx3dkc748zc8g6qbrpya7r8kfkcl7y8hw"))))
     (build-system cmake-build-system)
     (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'enable-testing
-            (lambda _
-              (substitute* "CMakeLists.txt"
-                (("target_link_libraries\\(biosoup_test")
-                 "enable_testing()
-  add_test(NAME biosoup-test COMMAND biosoup_test)
-  target_link_libraries(biosoup_test")))))))
+     `(#:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda* (#:key tests? #:allow-other-keys)
+             (when tests?
+               (invoke "./bin/biosoup_test")))))))
     (native-inputs
      (list googletest))
     (home-page "https://github.com/rvaser/biosoup")
@@ -4933,29 +4928,26 @@ used for storage and logging in bioinformatics tools.")
 (define-public bioparser
   (package
     (name "bioparser")
-    (version "3.1.0")
+    (version "3.0.13")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/rvaser/bioparser")
-             (commit version)))
+             ;; Corresponds to tag 3.0.13
+             (commit "13341e6e0855c6b358ffcea6dad216e1009e1287")))
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "057zb3g8qyvbkbfzgkygrf0iphz3v4icm13pchxzrafiy7zkbmrq"))))
+         "0c5p2dl8jb12ci9f427jzrmmm9cgvc1k4fxsn2ggkfsin6r1r82i"))))
     (build-system cmake-build-system)
     (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'enable-testing
-            (lambda _
-              (substitute* "CMakeLists.txt"
-                (("target_link_libraries\\(bioparser_test")
-                 "enable_testing()
-  add_test(NAME bioparser-test COMMAND bioparser_test)
-  target_link_libraries(bioparser_test")))))))
+     `(#:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda* (#:key tests? #:allow-other-keys)
+             (when tests?
+               (invoke "./bin/bioparser_test")))))))
     (inputs
      (list biosoup))
     (propagated-inputs
@@ -4969,6 +4961,113 @@ bioinformatics formats (FASTA/Q, MHAP/PAF/SAM), with support for zlib
 compressed files.")
     (license license:expat)))
 
+(define-public circtools
+  (package
+    (name "circtools")
+    (version "1.0.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/Kevinzjy/circtools")
+             ;; Corresponds to tag v1.0.0
+             (commit "79380de59013601021ca3b1352d6f64d2fb89646")
+             (recursive? #t)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "0wg1s927g32k25j967kfr8l30nmr4c0p4zvy5igvy7cs6chd60lh"))))
+    (build-system cargo-build-system)
+    (arguments
+     `(#:tests? #f
+       #:install-source? #f
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'make-writable
+           (lambda _
+             (for-each make-file-writable (find-files "."))))
+         (add-after 'unpack 'prepare-spoa-dependencies
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* "vendor/spoa/CMakeLists.txt"
+               (("find_package\\(bioparser 3.0.13 QUIET\\)")
+                "find_package(bioparser 3.0.13 CONFIG)")
+               (("find_package\\(biosoup 0.10.0 QUIET\\)")
+                "find_package(biosoup 0.10.0 CONFIG)")
+               (("GTest_FOUND") "TRUE")))))))
+    (inputs
+     (cons* bioparser biosoup (cargo-inputs 'circtools)))
+    (native-inputs
+     (list cmake-minimal pkg-config googletest))
+    (home-page "https://github.com/Kevinzjy/circtools")
+    (synopsis "Accelerating functions in CIRI toolkit")
+    (description "This package provides accelerated functions for the CIRI
+toolkit.  It also provides the @code{ccs} executable to scan for circular
+consensus sequences.")
+    (license license:expat)))
+
+(define-public ciri-long
+  (package
+    (name "ciri-long")
+    (version "1.0.2")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/bioinfo-biols/CIRI-long")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "10k88i1fcqchrrjv82rmylwvbwqfba0n51palhig9hsg71xs0dbi"))
+       ;; Delete bundled binary
+       (snippet '(delete-file "libs/ccs"))))
+    (build-system pyproject-build-system)
+    (arguments
+     (list
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'relax-requirements
+            (lambda _
+              (substitute* "setup.py"
+                (("'argparse[^']*',")
+                 "") ;only for python2
+                (("==")
+                 ">=")
+                ;; This package changed names.
+                (("python-Levenshtein")
+                 "levenshtein"))))
+          (add-before 'build 'build-libssw
+            (lambda _
+              (with-directory-excursion "libs/striped_smith_waterman"
+                (invoke "make" "libssw.so"))))
+          (add-before 'build 'fix-reference-to-ccs
+            (lambda* (#:key inputs #:allow-other-keys)
+              (substitute* "CIRI_long/pipeline.py"
+                (("'ccs -i")
+                 (string-append "'"
+                                (assoc-ref inputs "circtools") "/bin/ccs"
+                                " -i")))
+              ;; yuck!
+              (substitute* "CIRI_long/main.py"
+                (("os.chmod\\(lib_path.*")
+                 "")))))))
+    (inputs (list circtools
+                  python-biopython
+                  python-bwapy
+                  python-levenshtein
+                  python-mappy
+                  python-numpy
+                  python-pandas
+                  python-pysam
+                  python-pyspoa
+                  python-scikit-learn
+                  python-scipy))
+    (native-inputs (list python-cython python-pynose python-setuptools))
+    (home-page "https://ciri-cookbook.readthedocs.io/")
+    (synopsis "Circular RNA identification for Nanopore sequencing")
+    (description "CIRI-long is a package for circular RNA identification using
+long-read sequencing data.")
+    (license license:expat)))
+
 (define-public python-circe
   (package
     (name "python-circe")
@@ -7076,16 +7175,14 @@ CWL descriptions.")
   (package
     (name "ravanan")
     (version "0.2.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/arunisaac/ravanan")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32
-         "1ap9h2d92wjvnn8914baqkx6xn8zdanxmpjfg81v3qx35pn938al"))))
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://github.com/arunisaac/ravanan/releases/download/v"
+                    version "/ravanan-" version ".tar.lz"))
+              (sha256
+               (base32
+                "00ayvxsgvma3231ja1759f5fr99a4nw3j23i8qz616wfxa54745s"))))
     (arguments
      (list #:make-flags
            #~(list (string-append "prefix=" #$output)
@@ -7119,7 +7216,7 @@ CWL descriptions.")
     (inputs
      (list bash-minimal
            node
-           (lookup-package-input guix "guile")
+           guile-3.0
            guile-filesystem
            guile-gcrypt
            guile-json-4
@@ -7238,7 +7335,7 @@ genome- and pangenome-scale queries using a laptop.")
 (define-public delly
   (package
     (name "delly")
-    (version "1.7.3")
+    (version "0.8.3")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -7246,7 +7343,7 @@ genome- and pangenome-scale queries using a laptop.")
                     (commit (string-append "v" version))))
               (file-name (git-file-name name version))
               (sha256
-               (base32 "1ri7m7iv3wakm7zdwqdzm5m71y0swad9n78dzrzr9gs3j7j5yxjs"))
+               (base32 "1ibnplgfzj96w8glkx17v7sld3pm402fr5ybmf3h0rlcryabxrqy"))
               (modules '((guix build utils)))
               (snippet
                '(delete-file-recursively "src/htslib"))))
@@ -7651,6 +7748,78 @@ reads at a typical sensitivity of 90-99% relative to BLAST depending on the
 data and settings.")
     (license license:gpl3+)))
 
+(define-public discrover
+  (package
+    (name "discrover")
+    (version "1.6.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/maaskola/discrover")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "173fwi2vb6a5kp406hm3jj6j7v4whww796f2qcygp4rpvamh307y"))))
+    (build-system cmake-build-system)
+    (arguments
+     `(#:tests? #f                      ; there are no tests
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'build 'set-force-source-date
+           ;; for reproducible dates, texlive needs this to respect
+           ;; SOURCE_DATE_EPOCH
+           (lambda _
+             (setenv "FORCE_SOURCE_DATE" "1")))
+         (add-before 'build 'use-writable-texmfvar
+           ;; Use writable TEXMFVAR to generate fonts.
+           (lambda _
+             (setenv "TEXMFVAR" "/tmp")))
+         (add-after 'unpack 'fix-latex-errors
+           (lambda _
+             (with-fluids ((%default-port-encoding #f))
+               (substitute* "doc/references.bib"
+                 (("\\{S\\}illanp[^,]+,")
+                  "{S}illanp{\\\"a}{\\\"a},")))
+             ;; XXX: I just can't get pdflatex to not complain about these
+             ;; characters.  They end up in the manual via the generated
+             ;; discrover-cli-help.txt.
+             (substitute* "src/hmm/cli.cpp"
+               (("µ") "mu")
+               (("η") "eta")
+               (("≤") "<="))
+             ;; This seems to be a syntax error.
+             (substitute* "doc/discrover-manual.tex"
+               (("theverbbox\\[t\\]") "theverbbox"))))
+         (add-after 'unpack 'add-missing-includes
+           (lambda _
+             (substitute* "src/executioninformation.hpp"
+               (("#define EXECUTIONINFORMATION_HPP" line)
+                (string-append line "\n#include <random>")))
+             (substitute* "src/plasma/fasta.hpp"
+               (("#define FASTA_HPP" line)
+                (string-append line "\n#include <random>"))))))))
+    (inputs
+     (list boost cairo rmath-standalone))
+    (native-inputs
+     (list (texlive-local-tree
+            (list texlive-doi
+                  texlive-etoolbox
+                  texlive-examplep
+                  texlive-forloop
+                  texlive-listofitems
+                  texlive-natbib
+                  texlive-pgf           ;tikz
+                  texlive-readarray
+                  texlive-verbatimbox))
+           imagemagick))
+    (home-page "https://dorina.mdc-berlin.de/public/rajewsky/discrover/")
+    (synopsis "Discover discriminative nucleotide sequence motifs")
+    (description "Discrover is a motif discovery method to find binding sites
+of nucleic acid binding proteins.")
+    (license license:gpl3+)))
+
 (define-public eddylab-squid
   (package
     (name "eddylab-squid")
@@ -9505,16 +9674,16 @@ data.  It also provides the @command{bgzip}, @command{htsfile}, and
 (define-public idr
   (package
     (name "idr")
-    (version "2.0.4.2")
+    (version "2.0.3")
     (source (origin
               (method git-fetch)
               (uri (git-reference
-                    (url "https://github.com/kundajelab/idr")
+                    (url "https://github.com/nboley/idr")
                     (commit version)))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "01491ffhhj5plmpvvwmzp6c5arp5390h3jdpgsai92y6xbsgvxz8"))
+                "04j876h6z444v2q79drxx283d3k5snd72kj895wbalnl42206x9g"))
               ;; Delete generated C code.
               (snippet
                '(begin (delete-file "idr/inv_cdf.c") #t))))
@@ -9522,21 +9691,11 @@ data.  It also provides the @command{bgzip}, @command{htsfile}, and
     ;; There is only one test ("test_inv_cdf.py") and it tests features that
     ;; are no longer part of this package.  It also asserts False, which
     ;; causes the tests to always fail.
-    (arguments
-     (list
-      #:tests? #f
-      #:phases
-      '(modify-phases %standard-phases
-         (add-after 'unpack 'numpy-compatibility
-           (lambda _
-             (substitute* "idr/idr.py"
-               (("numpy.int") "int"))
-             (substitute* "idr/inv_cdf.pyx"
-               (("np.int_t") "np.int64_t")))))))
+    (arguments `(#:tests? #f))
     (propagated-inputs
-     (list python-scipy python-sympy python-numpy python-matplotlib))
+     (list python-scipy python-sympy python-numpy-1 python-matplotlib))
     (native-inputs
-     (list python-cython
+     (list python-cython-0
            python-setuptools))
     (home-page "https://github.com/nboley/idr")
     (synopsis "Tool to measure the irreproducible discovery rate (IDR)")
@@ -13056,22 +13215,28 @@ differently labelled data.")
 (define-public r-pando
   (package
     (name "r-pando")
-    (version "1.1.1")
+    (version "1.0.5")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
-              (url "https://github.com/quadbio/Pando")
-              (commit (string-append "v" version))))
+             (url "https://github.com/quadbiolab/Pando")
+             (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1zcsg3my1ka2wprvlx8p08cdz3dqphga54d5rp418zfhcyjy4fkp"))))
+        (base32 "04kr1b28p5j7h48g32cldkg87xcmxnmd4kspygkfs7a4amihpi66"))))
     (properties `((upstream-name . "Pando")))
     (build-system r-build-system)
     (arguments
      (list
       ;; The test file data/test_seurat.rds is not included.
-      #:tests? #false))
+      #:tests? #false
+      #:phases
+      '(modify-phases %standard-phases
+         (add-after 'unpack 'loosen-requirements
+           (lambda _
+             (substitute* "DESCRIPTION"
+               ((" \\(==.*,") ",")))))))
     (propagated-inputs
      (list r-bayestestr
            r-foreach
@@ -16000,7 +16165,7 @@ dispersal.  Its output can be processed by treeannotator (from the
     (inputs
      (list boost-for-mysql
            cereal
-           cgal-5
+           cgal
            gsl
            hdf5
            fftw
@@ -17868,7 +18033,7 @@ expression report comparing samples in an easily configurable manner.")
 (define-public pigx-chipseq
   (package
     (name "pigx-chipseq")
-    (version "0.2.0")
+    (version "0.1.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/BIMSBbioinfo/pigx_chipseq/"
@@ -17876,7 +18041,7 @@ expression report comparing samples in an easily configurable manner.")
                                   "/pigx_chipseq-" version ".tar.gz"))
               (sha256
                (base32
-                "09m1bpjapfxwhzrnvfs2g2zv28k6af7yf7s5ji861nb9bwlkmyi7"))))
+                "008n6drj9q5av86xihxlj4py2c9p3c5z5ld89c3bksrp77zxiy67"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ; parts of the tests rely on access to the network
@@ -17927,7 +18092,7 @@ expression report comparing samples in an easily configurable manner.")
            python-magic
            python-xlrd
            trim-galore
-           macs-3
+           macs
            multiqc
            perl
            pandoc
@@ -18275,6 +18440,44 @@ following the assay and produces a file detailing peaks of significant
 enrichment.")
     (license license:expat)))
 
+(define-public mantis
+  ;; This is an arbitrary commit as a year has passed since 0.1 was tagged.
+  (let ((commit "b6979a269172a45201c8366680d8b889f889432b")
+        (revision "2"))
+    (package
+      (name "mantis")
+      (version (git-version "0.1" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/splatlab/mantis")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "0dq8a785hnaxx5kq757m5czs8xpcjpcph1inq2nm8h6zfvqyj8xs"))))
+      (build-system cmake-build-system)
+      (arguments
+       '(#:tests? #f ; there are none
+         #:configure-flags (list "-DNH=ON"))) ; do not use SSE4.2 instructions
+      (inputs
+       (list sdsl-lite openssl zlib))
+      (native-inputs
+       (list gcc-7))
+      (home-page "https://github.com/splatlab/mantis")
+      (synopsis "Large-scale sequence-search index data structure")
+      (description "Mantis is a space-efficient data structure that can be
+used to index thousands of raw-read genomics experiments and facilitate
+large-scale sequence searches on those experiments.  Mantis uses counting
+quotient filters instead of Bloom filters, enabling rapid index builds and
+queries, small indexes, and exact results, i.e., no false positives or
+negatives.  Furthermore, Mantis is also a colored de Bruijn graph
+representation, so it supports fast graph traversal and other topological
+analyses in addition to large-scale sequence-level searches.")
+      ;; uses __uint128_t and inline assembly
+      (supported-systems '("x86_64-linux"))
+      (license license:bsd-3))))
+
 (define-public sjcount
   ;; There is no tag for version 3.2, nor is there a release archive.
   (let ((commit "292d3917cadb3f6834c81e509c30e61cd7ead6e5")
@@ -22289,6 +22492,37 @@ combinatorial configurations.\", G. Ehrlich - Journal of the ACM (JACM),
 1973. (Algorithm 7.)")
     (license license:expat)))
 
+(define-public fsom
+  (let ((commit "a6ef318fbd347c53189384aef7f670c0e6ce89a3"))
+    (package
+      (name "fsom")
+      (version (git-version "0.0.0" "1" commit))
+      (source (origin
+        (method git-fetch)
+        (uri (git-reference
+              (url "https://github.com/ekg/fsom/")
+              (commit commit)))
+        (file-name (git-file-name name version))
+        (sha256
+         (base32 "0gw1lpvr812pywg9y546x0h1hhj261xwls41r6kqhddjlrcjc0pi"))))
+      (build-system gnu-build-system)
+      (arguments
+       `(#:tests? #f ; There are no tests to run.
+         #:phases
+         (modify-phases %standard-phases
+           (delete 'configure) ; There is no configure phase.
+           (replace 'install
+             (lambda* (#:key outputs #:allow-other-keys)
+               (let ((bin (string-append (assoc-ref outputs "out") "/bin")))
+                 (install-file "fsom" bin)))))))
+      (native-inputs
+       (list gcc-6))
+      (home-page "https://github.com/ekg/fsom")
+      (synopsis "Manage SOM (Self-Organizing Maps) neural networks")
+      (description "A tiny C library for managing SOM (Self-Organizing Maps)
+neural networks.")
+      (license license:gpl3))))
+
 (define-public fastahack
   (package
     (name "fastahack")

gnu/packages/bittorrent.scm

@@ -41,16 +41,32 @@
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 (define-module (gnu packages bittorrent)
+  #:use-module (guix packages)
+  #:use-module (guix download)
+  #:use-module (guix git-download)
+  #:use-module (guix build-system cmake)
+  #:use-module (guix build-system gnu)
+  #:use-module (guix build-system meson)
+  #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
+  #:use-module (guix build-system qt)
+  #:use-module (guix build-system glib-or-gtk)
+  #:use-module ((guix licenses) #:prefix l:)
+  #:use-module (guix gexp)
+  #:use-module (guix utils)
+  #:use-module ((guix search-paths) #:select ($SSL_CERT_DIR $SSL_CERT_FILE))
+  #:use-module (gnu packages)
+  #:use-module (gnu packages adns)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages bash)
   #:use-module (gnu packages boost)
+  #:use-module (gnu packages nss)
   #:use-module (gnu packages check)
   #:use-module (gnu packages cmake)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages crypto)
   #:use-module (gnu packages curl)
   #:use-module (gnu packages cyrus-sasl)
-  #:use-module (gnu packages dns)
   #:use-module (gnu packages freedesktop)
   #:use-module (gnu packages gettext)
   #:use-module (gnu packages glib)
@@ -60,9 +76,8 @@
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages libevent)
   #:use-module (gnu packages multiprecision)
-  #:use-module (gnu packages ncurses)
   #:use-module (gnu packages nettle)
-  #:use-module (gnu packages nss)
+  #:use-module (gnu packages ncurses)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages python)
@@ -71,30 +86,15 @@
   #:use-module (gnu packages python-crypto)
   #:use-module (gnu packages python-web)
   #:use-module (gnu packages python-xyz)
-  #:use-module (gnu packages qt)
   #:use-module (gnu packages serialization)
+  #:use-module (gnu packages qt)
   #:use-module (gnu packages sqlite)
   #:use-module (gnu packages ssh)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages version-control)
   #:use-module (gnu packages web)
   #:use-module (gnu packages xml)
-  #:use-module (gnu packages xorg)
-  #:use-module (gnu packages)
-  #:use-module (guix build-system cmake)
-  #:use-module (guix build-system glib-or-gtk)
-  #:use-module (guix build-system gnu)
-  #:use-module (guix build-system meson)
-  #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
-  #:use-module (guix build-system qt)
-  #:use-module (guix download)
-  #:use-module (guix gexp)
-  #:use-module (guix git-download)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix packages)
-  #:use-module ((guix search-paths) #:select ($SSL_CERT_DIR $SSL_CERT_FILE))
-  #:use-module (guix utils))
+  #:use-module (gnu packages xorg))
 
 (define-public transmission
   (package
@@ -194,7 +194,7 @@ DHT, µTP, PEX and Magnet Links.")
     ;; or any future license endorsed by Mnemosyne LLC.
     ;;
     ;; A few files files carry an MIT/X11 license header.
-    (license (list license:gpl2 license:gpl3))))
+    (license (list l:gpl2 l:gpl3))))
 
 (define-public transmission-remote-gtk
   (package
@@ -224,7 +224,7 @@ DHT, µTP, PEX and Magnet Links.")
     (description "transmission-remote-gtk is a GTK client for remote management
 of the Transmission BitTorrent client, using its HTTP RPC protocol.")
     (home-page "https://github.com/transmission-remote-gtk/transmission-remote-gtk")
-    (license license:gpl2+)))
+    (license l:gpl2+)))
 
 (define-public stig
   (package
@@ -267,7 +267,7 @@ of the Transmission BitTorrent client, using its HTTP RPC protocol.")
      "Stig is a @acronym{TUI, Text User Interface} and @acronym{CLI, Command
 Line Interface} client for the BitTorrent client Transmission.")
     (home-page "https://github.com/rndusr/stig")
-    (license license:gpl3)))
+    (license l:gpl3)))
 
 (define-public libtorrent
   (package
@@ -291,7 +291,7 @@ Line Interface} client for the BitTorrent client Transmission.")
 with the BitTorrent client rtorrent.  It is written in C++ with emphasis on
 speed and efficiency.")
     (home-page "https://github.com/rakshasa/libtorrent")
-    (license license:gpl2+)))
+    (license l:gpl2+)))
 
 (define-public rtorrent
   (package
@@ -320,7 +320,7 @@ speed and efficiency.")
 full encryption, DHT, PEX, and Magnet Links.  It can also be controlled via
 XML-RPC over SCGI.")
     (home-page "https://github.com/rakshasa/rtorrent")
-    (license license:gpl2+)))
+    (license l:gpl2+)))
 
 (define-public tremc
   (let ((commit "d8deaa5ac25bb45a2ca3a930309d6ecc74836a54")
@@ -354,25 +354,25 @@ XML-RPC over SCGI.")
     (description "Tremc is a console client, with a curses interface, for the
 Transmission BitTorrent daemon.")
     (home-page "https://github.com/tremc/tremc")
-    (license license:gpl3+))))
+    (license l:gpl3+))))
 
 (define-public aria2
   (package
     (name "aria2")
     (version "1.37.0")
     (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/aria2/aria2")
-                     (commit (string-append "release-" version))))
+              (method url-fetch)
+              (uri (string-append "https://github.com/aria2/aria2/releases/"
+                                  "download/release-" version
+                                  "/aria2-" version ".tar.xz"))
               (sha256
                (base32
-                "1yr9yxr7z3bdg51afpzj0i63xl2rdk1prl20qws21y6r1x58vf65"))
-              (file-name (git-file-name name version))
+                "0sxng4pynhj2qinranpv6wyzys3d42kz1gg2nrn63sw5f2nj1930"))
               (patches (search-patches "aria2-unbundle-wslay.patch"))
               (snippet
                #~(begin (use-modules (guix build utils))
-                        (delete-file-recursively "deps")))))
+                        (delete-file-recursively "deps")
+                        (delete-file "configure")))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -382,13 +382,10 @@ Transmission BitTorrent daemon.")
                               #$output "/etc/bash_completion.d/"))
        #:phases
        #~(modify-phases %standard-phases
-           (add-after 'unpack 'update-gettext-version
+           (add-after 'unpack 'patch-configure
              (lambda _
                (substitute* "configure.ac"
-                 (("AM_GNU_GETTEXT_VERSION\\(.*\\)")
-                  (format #f "AM_GNU_GETTEXT_VERSION([~a])"
-                          #$(package-version (this-package-native-input
-                                              "gettext-minimal")))))))
+                 (("0[.]18") "0.19.6"))))
            (add-after 'unpack 'delete-socket-tests
              (lambda _
                (substitute* "test/LpdMessageDispatcherTest.cc"
@@ -420,7 +417,9 @@ Transmission BitTorrent daemon.")
       "Aria2 is a lightweight, multi-protocol & multi-source command-line
 download utility.  It supports HTTP/HTTPS, FTP, SFTP, BitTorrent and Metalink.
 Aria2 can be manipulated via built-in JSON-RPC and XML-RPC interfaces.")
-    (license license:gpl2+)))
+    (properties
+     '((release-monitoring-url . "https://github.com/aria2/aria2/releases")))
+    (license l:gpl2+)))
 
 (define-public uget
   (package
@@ -454,7 +453,7 @@ Aria2 can be manipulated via built-in JSON-RPC and XML-RPC interfaces.")
      "uGet is portable download manager with GTK+ interface supporting
 HTTP, HTTPS, BitTorrent and Metalink, supporting multi-connection
 downloads, download scheduling, download rate limiting.")
-    (license license:lgpl2.1+)))
+    (license l:lgpl2.1+)))
 
 (define-public mktorrent
   (package
@@ -489,8 +488,8 @@ files and whole directories.  It can add multiple trackers and web seed URLs,
 and set the @code{private} flag to disallow advertisement through the
 distributed hash table (@dfn{DHT}) and Peer Exchange.  Hashing is multi-threaded
 and will take advantage of multiple processor cores where possible.")
-    (license (list license:public-domain ; sha1.*, used to build without OpenSSL
-                   license:gpl2+))))     ; with permission to link with OpenSSL
+    (license (list l:public-domain      ; sha1.*, used to build without OpenSSL
+                   l:gpl2+))))          ; with permission to link with OpenSSL
 
 (define-public libtorrent-rasterbar
   (package
@@ -542,7 +541,7 @@ and will take advantage of multiple processor cores where possible.")
      "libtorrent-rasterbar is a feature-complete C++ BitTorrent implementation
 focusing on efficiency and scalability.  It runs on embedded devices as well as
 desktops.")
-    (license license:bsd-2)))
+    (license l:bsd-2)))
 
 (define-public qbittorrent
   (package
@@ -586,7 +585,7 @@ libtorrent (sometimes called libtorrent-rasterbar) by Arvid Norberg.
 It aims to be a good alternative to all other BitTorrent clients out there.
 qBittorrent is fast, stable and provides unicode support as well as many
 features.")
-    (license license:gpl2+)))
+    (license l:gpl2+)))
 
 (define-public qbittorrent-no-x
   (let ((base qbittorrent))
@@ -728,4 +727,4 @@ Protocol Encryption, DHT, Local Peer Discovery (LSD), Peer Exchange
 speed limits.  Deluge heavily utilises the ​libtorrent library.  It is
 designed to run as both a normal standalone desktop application and as a
 ​client-server.")
-    (license license:gpl3+)))
+    (license l:gpl3+)))

gnu/packages/books.scm

@@ -334,7 +334,7 @@ parallel study, and original language study.")
 (define-public book-emacs-lisp-elements
   (package
     (name "book-emacs-lisp-elements")
-    (version "2.0.4")
+    (version "2.0.1")
     (source
      (origin
        (method git-fetch)
@@ -343,7 +343,7 @@ parallel study, and original language study.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "06mhrb16h93n3s3srcfgmzsyh2lxx4ffj1di6qvczfg4039pi3c8"))))
+        (base32 "0774zycgx3zspn6f8pszap1751xgrlv2h3x66kksnj589nfnwzil"))))
     (build-system emacs-build-system)
     (arguments
      (list

gnu/packages/bootloaders.scm

@@ -267,8 +267,8 @@
              ;; rebooting.
              (if (member (or (%current-target-system)
                              (%current-system))
-                           (package-supported-systems fuse))
-                 (list fuse)
+                           (package-supported-systems fuse-2))
+                 (list fuse-2)
                  '())))
     (native-inputs
      (append (list pkg-config

gnu/packages/browser-extensions.scm

@@ -69,55 +69,6 @@ match website theme.")
 (define-public adaptive-tab-bar-colour/icecat
   (make-icecat-extension adaptive-tab-bar-colour))
 
-(define canvasblocker
-  (package
-    (name "canvasblocker")
-    (version "1.12")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/kkapsner/CanvasBlocker")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0xxs6s7nrl4y4qiw2cpkqh170mbv78n0ixd874a72jjvczw2vpg7"))
-       (modules '((guix build utils) (ice-9 match) (ice-9 ftw)))
-       (snippet
-        #~(begin
-            (for-each delete-file
-                      '("canvasblocker.xpi" "package-lock.json"))
-            ;; Delete all hidden files/directories except .tools.
-            (for-each
-             (match-lambda
-               ((or "." ".tools" ".."
-                    (? (lambda (name)
-                         (not (string-prefix? "." name)))))
-                #t)
-               ((? file-is-directory? dir)
-                (delete-file-recursively dir))
-               (file
-                (delete-file file)))
-             (scandir "."))))))
-    (build-system copy-build-system)
-    (properties '((addon-id . "CanvasBlocker@kkapsner.de")))
-    (arguments
-     (list
-      #:install-plan  ;deduced from .tools/build.js
-      #~'(("." #$(assq-ref properties 'addon-id)
-           #:exclude ("crowdin.yml" "package.json" "releaseNotes.txt")
-           #:exclude-regexp ("test/.*" "versions/.*" ".tools/*")))))
-    (home-page "https://github.com/kkapsner/CanvasBlocker")
-    (synopsis "Firefox extension to protect from being fingerprinted")
-    (description "This extension allows users to prevent websites from using
-some Javascript APIs to fingerprint them.  Users can choose to block the APIs
-entirely on some or all websites (which may break some websites) or just block
-or fake its fingerprinting-friendly readout API.")
-    (license license:mpl2.0)))
-
-(define-public canvasblocker/icecat
-  (make-icecat-extension canvasblocker))
-
 (define play-to-kodi
   (package
     (name "play-to-kodi")
@@ -144,8 +95,8 @@ supported content to the Kodi media center.")
   ;; Arbitrary commit of branch master,
   ;; Update when updating uBlockOrigin.
   (let* ((name "ublock-main-assets")
-         (commit "004af606e6a0efc22bc65ab1016b553441cacb71")
-         (revision "6")
+         (commit "011eef4a5b36a7ebf4adedc486d96b77cfa25c54")
+         (revision "5")
          (version (git-version "0" revision commit)))
     (origin
       (method git-fetch)
@@ -154,14 +105,14 @@ supported content to the Kodi media center.")
             (commit commit)))
       (file-name (git-file-name name version))
       (sha256
-       (base32 "1bfd2d53flrkgvjcr1kj9nbxj4y9a4pcr7m3dycccdhd21x6k0ln")))))
+       (base32 "0ng8a88zdvrxg30fz83gswjy27b3hfx9q11n2i715id7az7kqf9x")))))
 
 (define ublock-prod-assets
   ;; Arbitrary commit of branch gh-pages,
   ;; Update when updating uBlockOrigin.
   (let* ((name "ublock-prod-assets")
-         (commit "6c15e4ef91888c610caf73829dc78ae9549ed24a")
-         (revision "6")
+         (commit "6844322800de647da0c4fe06dd6a0b212a3942e4")
+         (revision "5")
          (version (git-version "0" revision commit)))
     (origin
       (method git-fetch)
@@ -170,12 +121,12 @@ supported content to the Kodi media center.")
             (commit commit)))
       (file-name (git-file-name name version))
       (sha256
-       (base32 "0n2h6drqh44b1zgl729bfr70n08mkm536a2vqgivw7dm5dmi8zd3")))))
+       (base32 "13vxq4z1wxivz5xklncxd2sj5aqkyhq919vzbbfp0fgh0imhikib")))))
 
 (define ublock-origin
   (package
     (name "ublock-origin")
-    (version "1.70.0")
+    (version "1.66.2")
     (home-page "https://github.com/gorhill/uBlock")
     (source (origin
               (method git-fetch)
@@ -185,7 +136,7 @@ supported content to the Kodi media center.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0j1m80nz86yc69c42hv5di5zza0vkycqmjaydb9jgx0abcvi19x5"))))
+                "16ph031hb8bf4rxyxvm6jr0bxmy0snza11jfrbjgfb390gax9r63"))))
     (build-system gnu-build-system)
     (outputs '("xpi" "firefox" "chromium"))
     (properties '((addon-id . "uBlock0@raymondhill.net")))
@@ -312,7 +263,7 @@ fill and submit login forms if a matching password entry is found.")
 (define keepassxc-browser
   (package
     (name "keepassxc-browser")
-    (version "1.9.10")
+    (version "1.9.9.6")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -322,7 +273,7 @@ fill and submit login forms if a matching password entry is found.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "18kgmdvsq1kv9px8a1m7i10r4m0iik72qlnw9k2ijxmn1xikfyfb"))
+                "1chw1y1332zn69s7kf5mkljc1bp2xfvl3zzvafnalv3zj2jsa5cs"))
 	      ;;  Default 'manifest.json' targets chromium based browsers and
 	      ;;  depends on background.service_worker support.
 	      ;;  See: <https://bugzilla.mozilla.org/show_bug.cgi?id=1573659>
@@ -377,15 +328,15 @@ with the @uref{https://keepassxc.org, KeePassXC} password manager.")
 (define noscript
   (package
     (name "noscript")
-    (version "13.6.19.1984")
+    (version "13.2.2")
     (source (origin
               (method url-fetch/zipbomb)
               (uri (string-append
-                    "https://archive.torproject.org/tor-package-archive/torbrowser/noscript/noscript-"
-                    version ".xpi"))
+                    "https://noscript.net/download/releases/noscript-" version
+                    ".xpi"))
               (sha256
                (base32
-                "1lb3855w34avs7idvycv8cfpjnpic2mnsh9yqkidrdw7msr0na74"))))
+                "0w2w0a76dk01bkh83mqwgs9ky02rjqk15z5sxg4a6mw0hpr81bpm"))))
     (build-system copy-build-system)
     (properties '((addon-id . "{73a6fe31-595d-460b-a920-fcc0f8843232}")))
     (arguments

gnu/packages/build-tools.scm

@@ -44,17 +44,37 @@
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 (define-module (gnu packages build-tools)
+  #:use-module (ice-9 optargs)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (gnu packages c)
+  #:use-module (guix build-system cmake)
+  #:use-module (guix build-system copy)
+  #:use-module (guix build-system gnu)
+  #:use-module (guix build-system guile)
+  #:use-module (guix build-system hare)
+  #:use-module (guix build-system meson)
+  #:use-module (guix build-system pyproject)
+  #:use-module (guix build-system python)
+  #:use-module (guix build-system trivial)
+  #:use-module (guix deprecation)
+  #:use-module (guix download)
+  #:use-module (guix gexp)
+  #:use-module (guix git-download)
+  #:use-module (guix modules)
+  #:use-module (guix packages)
+  #:use-module (guix search-paths)
+  #:use-module (guix utils)
+  #:use-module (gnu packages)
+  #:use-module (gnu packages adns)
   #:use-module (gnu packages algebra)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)
   #:use-module (gnu packages bash)
-  #:use-module (gnu packages c)
   #:use-module (gnu packages check)
   #:use-module (gnu packages code)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages cpp)
   #:use-module (gnu packages cppi)
-  #:use-module (gnu packages dns)
   #:use-module (gnu packages elf)
   #:use-module (gnu packages gcc)
   #:use-module (gnu packages guile)
@@ -85,27 +105,7 @@
   #:use-module (gnu packages tls)
   #:use-module (gnu packages unicode)
   #:use-module (gnu packages version-control)
-  #:use-module (gnu packages xml)
-  #:use-module (gnu packages)
-  #:use-module (guix build-system cmake)
-  #:use-module (guix build-system copy)
-  #:use-module (guix build-system gnu)
-  #:use-module (guix build-system guile)
-  #:use-module (guix build-system hare)
-  #:use-module (guix build-system meson)
-  #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
-  #:use-module (guix build-system trivial)
-  #:use-module (guix deprecation)
-  #:use-module (guix download)
-  #:use-module (guix gexp)
-  #:use-module (guix git-download)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix modules)
-  #:use-module (guix packages)
-  #:use-module (guix search-paths)
-  #:use-module (guix utils)
-  #:use-module (ice-9 optargs))
+  #:use-module (gnu packages xml))
 
 (define-public acr
   (package
@@ -196,8 +196,7 @@ according to the system capabilities and the user-selected options.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "13br735ig7lygvzyfd15fc2rdygrqm503j6xj5xkrl1r7w2wipq6"))
-              (patches (search-patches "bam-python3-compat.patch"))))
+                "13br735ig7lygvzyfd15fc2rdygrqm503j6xj5xkrl1r7w2wipq6"))))
     (build-system gnu-build-system)
     (arguments
      `(#:make-flags `(,(string-append "CC=" ,(cc-for-target))
@@ -208,7 +207,7 @@ according to the system capabilities and the user-selected options.")
        (modify-phases %standard-phases
          (delete 'configure))))
     (native-inputs
-     (list python-minimal-wrapper))
+     `(("python" ,python-2)))
     (inputs
      (list lua))
     (home-page "https://matricks.github.io/bam/")
@@ -275,14 +274,14 @@ generate such a compilation database.")
 (define-public bmake
   (package
     (name "bmake")
-    (version "20260508")
+    (version "20260313")
     (source
      (origin
        (method url-fetch)
        (uri (string-append
              "http://www.crufty.net/ftp/pub/sjg/bmake-" version ".tar.gz"))
        (sha256
-        (base32 "0b58j7l53jbqaxcfggimdbylf71hbyfm44m6s4646ry7mf8fl7kv"))
+        (base32 "0xgryknmv625idw37rq89mpl5rymwdb15j5w8zxwy1gf8b6z7j3n"))
        (patches (search-patches "bmake-run-check-separately.patch"))))
     (build-system gnu-build-system)
     (inputs
@@ -345,8 +344,8 @@ programs and other files depend.")
     (license license:bsd-3)))
 
 (define-public gn
-  (let ((commit "6e8dcdebbadf4f8aa75e6a4b6e0bdf89dce1513a")
-        (revision "2354"))            ;as returned by `git describe`, used below
+  (let ((commit "ee5b7e32b961a9da1933e9f46a018ba6cac8ef60")
+        (revision "2277"))            ;as returned by `git describe`, used below
     (package
       (name "gn")
       (version (git-version "0.0" revision commit))
@@ -356,7 +355,7 @@ programs and other files depend.")
                 (uri (git-reference (url home-page) (commit commit)))
                 (sha256
                  (base32
-                  "0yz38czmbc72q1hkiv3cwxqh2i8ji2vkkvvk5ws2cjplmn2vj0x9"))
+                  "19kkvwxl66vlzlfppbq03fmi59i5g8a1yc71fsfgwqqmx4wywd6w"))
                 (file-name (git-file-name name version))))
       (build-system gnu-build-system)
       (arguments
@@ -366,8 +365,7 @@ programs and other files depend.")
                    (lambda _
                      (setenv "CC" "gcc")
                      (setenv "CXX" "g++")
-                     (setenv "CXXFLAGS"
-                             "-g -O2 -Wno-error=redundant-move -Wno-error=comment")
+                     (setenv "CXXFLAGS" "-g -O2 -Wno-error=redundant-move")
                      (setenv "AR" "ar")))
                  (replace 'configure
                    (lambda _
@@ -1452,36 +1450,3 @@ It is an alternative to e.g. @command{make(1)} and @command{redo(1)}.  Features:
 @end itemize
 ")
     (license license:wtfpl2)))
-
-(define-public xmake
-  (package
-   (name "xmake")
-   (version "3.0.8")
-   (source (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/xmake-io/xmake.git")
-             (commit (string-append "v" version))
-             ;; Requires some dependencies from "xmake-core-*" repos
-             (recursive? #t)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1pdjz52w9lzfbcpx9wmzy0bsjg7i19xz43f63czk7jz9v0xba6gi"))))
-   (build-system gnu-build-system)
-   (arguments
-    (list
-     ;; No check rule in make
-     ;; TODO: find how to run Lua tests in "test" directory
-     #:tests? #f))
-   (home-page "https://xmake.io/")
-   (synopsis "Cross-platform build utility based on Lua")
-   (description "@command{xmake} is a cross-platform build utility based on Lua.
-Features:
-@itemize
-@item Built-in caching and parallel compilation,
-@item Concise Lua syntax,
-@item Custom rules, plugins and modules,
-@item Support for C++20 modules and compile_commands.json,
-@item Support for languages outside C/C++ (e.g. Go, Rust, Zig).
-@end itemize")
-   (license license:asl2.0)))

gnu/packages/c.scm

@@ -23,7 +23,7 @@
 ;;; Copyright © 2023, 2024 David Elsing <david.elsing@posteo.net>
 ;;; Copyright @ 2022, Kitzman <kitzman@disroot.org>
 ;;; Copyright @ 2025 Dariqq <dariqq@posteo.net>
-;;; Copyright © 2025, 2026 Ashish SHUKLA <ashish.is@lostca.se>
+;;; Copyright © 2025 Ashish SHUKLA <ashish.is@lostca.se>
 ;;; Copyright © 2026 Cayetano Santos <csantosb@inventati.org>
 ;;; Copyright © 2026 Sharlatan Hellseher <sharlatanus@gmail.com>
 ;;;
@@ -47,7 +47,6 @@
   #:use-module (guix gexp)
   #:use-module (guix utils)
   #:use-module (guix packages)
-  #:use-module (guix deprecation)
   #:use-module (guix download)
   #:use-module (guix git-download)
   #:use-module (guix build-system cmake)
@@ -63,7 +62,6 @@
   #:use-module (gnu packages bootstrap)
   #:use-module (gnu packages bison)
   #:use-module (gnu packages check)
-  #:use-module (gnu packages compiler-tools)
   #:use-module (gnu packages flex)
   #:use-module (gnu packages gawk)
   #:use-module (gnu packages gcc)
@@ -83,7 +81,6 @@
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages gettext)
   #:use-module (gnu packages pkg-config)
-  #:use-module (gnu packages sqlite)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages web)
   #:use-module (gnu packages xml))
@@ -1096,8 +1093,32 @@ portability.")
     (license (list license:bsd-2        ;all files except...
                    license:bsd-3))))    ;...the unidef.1 manual page
 
-(define-deprecated/public-alias byacc
-  (@ (gnu packages compiler-tools) byacc))
+(define-public byacc
+  (package
+    (name "byacc")
+    (version "20240109")
+    (source (origin
+             (method url-fetch)
+             (uri (string-append
+                   "https://invisible-mirror.net/archives/byacc/byacc-"
+                   version ".tgz"))
+             (sha256
+              (base32
+               "0il4w1vwbglayakywyghiqhcjpg1yvv5ww2p8ylz32bi05wpg2gj"))
+             (snippet
+              #~(begin (delete-file "btyaccpar.c")
+                       (delete-file "yaccpar.c")))))
+    (native-inputs
+     (list gawk))
+    (build-system gnu-build-system)
+    (home-page "https://invisible-island.net/byacc/byacc.html")
+    (synopsis "Berkeley Yacc LALR parser generator")
+    (description
+     "Berkeley Yacc is an LALR(1) parser generator.  Yacc reads the grammar
+specification from a file and generates an LALR(1) parser for it.  The parsers
+consist of a set of LALR(1) parsing tables and a driver routine written in the
+C programming language.")
+    (license license:public-domain)))
 
 (define-public argparse
   (package
@@ -1306,6 +1327,25 @@ for the @acronym{AWS,Amazon Web Services} SDK.")
     (home-page "https://github.com/awslabs/aws-c-sdkutils")
     (license license:asl2.0)))
 
+(define-public pcl
+  (package
+    (name "pcl")
+    (version "1.12")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+              "http://www.xmailserver.org/pcl-" version ".tar.gz"))
+       (sha256
+        (base32
+         "06ly65rq4iyj2p4704i215c8y4rgspwl8sxfaifmf4ahfr30bcz7"))))
+    (build-system gnu-build-system)
+    (home-page "http://www.xmailserver.org/libpcl.html")
+    (synopsis "Portable Coroutine Library")
+    (description "The @acronym{PCL, Portable Coroutine Library} implements the
+low level functionality for coroutines.")
+    (license license:gpl2+)))
+
 (define-public aws-c-http
   (package
     (name "aws-c-http")
@@ -1479,48 +1519,6 @@ Telemetry Transport (MQTT) publish-subscribe messaging protocol.")
     (home-page "https://microsoft.github.io/mimalloc/")
     (license license:expat)))
 
-(define-public mps
-  (package
-    (name "mps")
-    (version "1.118.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/Ravenbrook/mps")
-             (commit (string-append "release-" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "078iv3fsz0dnfwb7g63apkvcksczbqfxrxm73k80jwnwca6pgafy"))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'patch-cflags
-            ;; The recursive make call in the test suite doesn't pass CFLAGS
-            ;; down properly so we need to do it ourselves
-            (lambda _
-              (substitute* "Makefile.in"
-                (("CFLAGS=\"(.*)\"" _ flags)
-                 (string-append "CFLAGS=\"" flags " $(CFLAGS)\""))))))
-      #:parallel-build? #f ;Parallel build fails
-      #:test-target "test"
-      #:make-flags
-      #~(list "CFLAGS=-Wno-error=dangling-pointer -Wno-maybe-uninitialized"
-              ;; These flags are needed for the recursive make calls in testing
-              (string-append "CC=" #$(cc-for-target)) "-j" "1")))
-    (inputs (list sqlite))
-    (home-page "http://www.ravenbrook.com/project/mps")
-    (synopsis "Memory pool system")
-    (description
-     "This package provides a cross-platform memory management system.  It
-permits the flexible combination of memory management techniques, supporting
-manual and automatic memory management, in-line allocation, finalization,
-weakness, and multiple concurrent co-operating incremental generational
-garbage collections.  It also includes a library of memory pool classes
-implementing specialized memory management policies.")
-    (license license:bsd-2)))
 ;;; The package is named orangeduck-mpc to differentiate it from GNU mpc.
 (define-public orangeduck-mpc
   ;; The last release lacks an 'install' target.
@@ -1764,7 +1762,7 @@ string.h, but with a utf8* prefix instead of the str* prefix.")
 (define-public simdutf
   (package
     (name "simdutf")
-    (version "9.0.0")
+    (version "7.7.1")
     (source
      (origin
        (method git-fetch)
@@ -1773,7 +1771,7 @@ string.h, but with a utf8* prefix instead of the str* prefix.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0f5ccvqj7pfa69m9y1kxp2v1lybx6x8i9pykdqfkr7dydqbhrhx6"))))
+        (base32 "0kw4j4qqcfjaii667xa745pklj50m70nqq8cj5agj714acczbk7y"))))
     (build-system cmake-build-system)
     (arguments (list #:configure-flags #~(list "-DBUILD_SHARED_LIBS=ON")))
     (synopsis "SIMD Unicode validation and transcoding")

gnu/packages/cdrom.scm

@@ -337,7 +337,7 @@ reconstruction capability.")
 (define-public cdrdao
   (package
     (name "cdrdao")
-    (version "1.2.6")
+    (version "1.2.5")
     (source
      (origin
        (method git-fetch)
@@ -347,18 +347,30 @@ reconstruction capability.")
               (string-append "rel_" (string-replace-substring version "." "_")))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0hb8dfb88zk01yk5nfl8m5hsg4x2scb2899pxb717zywznr8jijw"))))
-    (build-system glib-or-gtk-build-system)
+        (base32 "1hh1lm4wr1vhsq2brczn94h88h3bppvjidj9cfqkl20jhaj38968"))))
+    (build-system gnu-build-system)
     (arguments
-     (list
-      #:configure-flags
-      #~(list
-         ;; Use the native SCSI interface.
-         "--without-scglib")))
+     '(#:configure-flags
+       (list
+        ;; GCDMaster depends on obsolete libgnomeuimm, see
+        ;; <https://github.com/cdrdao/cdrdao/issues/3>.
+        "--without-gcdmaster"
+        ;; Use the native SCSI interface.
+        "--without-scglib")
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'bootstrap 'fix-configure.ac
+           (lambda _
+             ;; Remove references to missing macros.
+             (substitute* "configure.ac"
+              (("^AM_GCONF_SOURCE_2.*") "")
+              ;; This was introduced in autoconf-2.70, but is described
+              ;; as usually not needed in the autoconf documentation.
+              (("^AC_CHECK_INCLUDES_DEFAULT") "")))))))
     (native-inputs
-     (list autoconf-2.72 automake `(,glib "bin") pkg-config))
+     (list autoconf automake pkg-config))
     (inputs
-     (list ao gtkmm-3 lame libmad libsigc++-2 libvorbis))
+     (list ao lame libmad libvorbis))
     (home-page "https://cdrdao.sourceforge.net")
     (synopsis "Read and write CDs in disk-at-once mode")
     (description "cdrdao records audio or data CDs in disk-at-once (DAO) mode,
@@ -583,11 +595,7 @@ capacity is user-selectable.")
                             version "/DVDStyler-" version ".tar.bz2"))
        (sha256
         (base32
-         "0n3mfjsazvlzk9hl23q3iz7bmxjq7b5lx0ab8nbk1jgl763k9cqb"))
-       (snippet
-        #~(begin (delete-file "src/dvdvml.c")
-                 (delete-file "src/dvdvmy.c")
-                 (delete-file "src/dvdvmy.h")))))
+         "0n3mfjsazvlzk9hl23q3iz7bmxjq7b5lx0ab8nbk1jgl763k9cqb"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags
@@ -617,28 +625,27 @@ capacity is user-selectable.")
              #t)))
        #:tests? #f)) ; No tests.
     (inputs ; TODO package bundled wxvillalib
-     (list bash-minimal ; for wrap-program
-           cdrtools
-           dbus
-           dvd+rw-tools
-           dvdauthor
-           eudev
-           ffmpeg-4
-           fontconfig
-           libexif
-           libjpeg-turbo
-           wxsvg
-           wxwidgets))
+     `(("wxwidgets" ,wxwidgets)
+       ("wssvg" ,wxsvg)
+       ("bash" ,bash-minimal) ; for wrap-program
+       ("dbus" ,dbus)
+       ("cdrtools" ,cdrtools)
+       ("dvd+rw-tools" ,dvd+rw-tools)
+       ("dvdauthor" ,dvdauthor)
+       ("eudev" ,eudev)
+       ("fontconfig" ,fontconfig)
+       ("libexif" ,libexif)
+       ("libjpeg" ,libjpeg-turbo)
+       ("ffmpeg" ,ffmpeg-4)))
     (native-inputs
-     (list bison
-           docbook-xml
-           docbook-xsl
-           flex
-           gettext-minimal
-           pkg-config
-           python-minimal-wrapper
-           xmlto
-           zip))
+     `(("pkg-config" ,pkg-config)
+       ("flex" ,flex)
+       ("python" ,python-2)
+       ("xmlto" ,xmlto)
+       ("gettext" ,gettext-minimal)
+       ("docbook-xml" ,docbook-xml)
+       ("docbook-xsl" ,docbook-xsl)
+       ("zip" ,zip)))
     (synopsis "DVD authoring application")
     (description "DVDStyler is a DVD authoring application which allows users
 to burn video files in many formats to DVD discs, complete with individually

gnu/packages/check.scm

@@ -3131,7 +3131,7 @@ time by mocking the datetime module.")
 (define-public python-flaky
   (package
     (name "python-flaky")
-    (version "3.8.1")  ; On bump, remove some skipped tests in python-cherrypy.
+    (version "3.8.1")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "flaky" version))
@@ -3719,6 +3719,30 @@ system.  The code under test requires no modification to work with pyfakefs.")
 directories and files.")
     (license license:expat)))
 
+(define-public python-pytest-tornado5
+  (package
+    (name "python-pytest-tornado5")
+    (version "2.0.0")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "pytest-tornado5" version))
+              (sha256
+               (base32
+                "0qb62jw2w0xr6y942yp0qxiy755bismjfpnxaxjjm05gy2pymr8d"))))
+    (build-system pyproject-build-system)
+    (arguments
+     ;; Tests require pytest < 6
+     (list #:tests? #f))
+    (propagated-inputs (list python-pytest python-tornado))
+    (native-inputs (list python-setuptools python-wheel))
+    (home-page "https://github.com/vidartf/pytest-tornado")
+    (synopsis
+     "Fixtures and markers to simplify testing of Tornado applications")
+    (description
+     "This package provides a @code{py.test} plugin supplying fixtures and
+markers to simplify testing of asynchronous tornado applications.")
+    (license license:asl2.0)))
+
 (define-public guile-proba
   (package
     (name "guile-proba")

gnu/packages/chemistry.scm

@@ -580,7 +580,7 @@ stored with user-specified precision.")
            python-sphinx))
     (inputs
      (list fftwf
-           `(,hwloc "lib")
+           `(,hwloc-2 "lib")
            libtirpc
            lmfit
            muparser

gnu/packages/chromium.scm

@@ -83,6 +83,7 @@
     "base/third_party/symbolize" ;BSD-3
     "base/third_party/xdg_user_dirs" ;Expat
     "net/third_party/mozilla_security_manager" ;MPL-1.1/GPL2+/LGPL2.1+
+    "net/third_party/nss" ;MPL-2.0
     "net/third_party/quiche" ;BSD-3
     "net/third_party/uri_template" ;ASL2.0
     "third_party/abseil-cpp" ;ASL2.0
@@ -103,11 +104,8 @@
     "third_party/catapult" ;BSD-3
     "third_party/catapult/common/py_vulcanize/third_party/rcssmin" ;ASL2.0
     "third_party/catapult/common/py_vulcanize/third_party/rjsmin" ;ASL2.0
-    "third_party/catapult/third_party/beautifulsoup4-4.9.3" ;Expat
-    "third_party/catapult/third_party/html5lib-1.1" ;Expat
     "third_party/catapult/third_party/polymer" ;BSD-3
     "third_party/catapult/third_party/six" ;Expat
-    "third_party/catapult/third_party/typ" ;ASL2.0
     ;; XXX: This is a minified version of <https://d3js.org/>.
     "third_party/catapult/tracing/third_party/d3" ;BSD-3
     "third_party/catapult/tracing/third_party/gl-matrix" ;Expat
@@ -122,12 +120,19 @@
     "third_party/cld_3" ;ASL2.0
     "third_party/closure_compiler" ;ASL2.0
     "third_party/compiler-rt" ;ASL2.0
+    "third_party/compiler-rt/src/lib" ;ASL2.0
+    "third_party/compiler-rt/src/lib/builtins" ;ASL2.0
     "third_party/content_analysis_sdk" ;BSD-3
     "third_party/cpuinfo" ;BSD-2
     "third_party/crabbyavif" ;ASL2.0
+    "third_party/crabbyavif/src/sys/dav1d-sys" ;ASL2.0
+    "third_party/crabbyavif/src/sys/aom-sys" ;ASL2.0
+    "third_party/crabbyavif/src/sys/libgav1-sys" ;ASL2.0
+    "third_party/crabbyavif/src/sys/libyuv-sys" ;ASL2.0
+    "third_party/crabbyavif/src/sys/ndk-sys" ;ASL2.0
     "third_party/crashpad" ;ASL2.0
     "third_party/crashpad/crashpad/third_party/lss" ;ASL2.0
-    "third_party/crashpad/crashpad/third_party/zlib" ;Zlib
+    "third_party/crashpad/crashpad/third_party/zlib/zlib_crashpad.h" ;Zlib
     "third_party/crc32c" ;BSD-3
     "third_party/cros_system_api" ;BSD-3
     "third_party/dav1d" ;BSD-2
@@ -135,25 +140,19 @@
     ;; TODO: can likely be unbundled when Vulkan is updated.
     "third_party/dawn/third_party/khronos" ;ASL2.0
     "third_party/dawn/third_party/gn/webgpu-cts" ;BSD-3
-    "third_party/dawn/third_party/renderdoc" ;Expat
-    "third_party/dawn/third_party/webgpu-headers" ;BSD-3
-    "third_party/depot_tools" ;BSD-3
-    "third_party/devscripts" ;GPL2.0
     "third_party/devtools-frontend" ;BSD-3
     "third_party/devtools-frontend/src/front_end"
     "third_party/devtools-frontend/src/front_end/third_party"
     "third_party/devtools-frontend/src/front_end/third_party/acorn" ;Expat
     "third_party/devtools-frontend/src/front_end/third_party\
 /additional_readme_paths.json" ;no explicit license; trivial
+    "third_party/devtools-frontend/src/front_end/third_party/json5" ;Expat
     "third_party/devtools-frontend/src/front_end/third_party/axe-core" ;MPL2.0
     "third_party/devtools-frontend/src/front_end/third_party/chromium" ;BSD-3
     "third_party/devtools-frontend/src/front_end/third_party/codemirror" ;Expat
-    "third_party/devtools-frontend/src/front_end/third_party/csp_evaluator" ;BSD-3
     "third_party/devtools-frontend/src/front_end/third_party/diff" ;ASL2.0
     "third_party/devtools-frontend/src/front_end/third_party/i18n" ;ASL2.0
     "third_party/devtools-frontend/src/front_end/third_party/intl-messageformat" ;BSD-3
-    "third_party/devtools-frontend/src/front_end/third_party/json5" ;Expat
-    "third_party/devtools-frontend/src/front_end/third_party/legacy-javascript" ;ASL-2.0
     "third_party/devtools-frontend/src/front_end/third_party/lighthouse" ;ASL2.0
     "third_party/devtools-frontend/src/front_end/third_party/lit" ;BSD-3
     "third_party/devtools-frontend/src/front_end/third_party/marked" ;Expat, BSD-3
@@ -165,12 +164,10 @@
     "third_party/devtools-frontend/src/front_end/third_party/puppeteer/third_party/parsel" ; Expat
     "third_party/devtools-frontend/src/front_end/third_party/puppeteer/third_party/rxjs" ; ASL2.0
     "third_party/devtools-frontend/src/front_end/third_party/puppeteer-replay" ;ASL2.0
-    "third_party/devtools-frontend/src/front_end/third_party/source-map-scopes-codec" ;BSD-3
     "third_party/devtools-frontend/src/front_end/third_party\
 /vscode.web-custom-data" ;Expat
     "third_party/devtools-frontend/src/front_end/third_party/third-party-web" ;Expat
     "third_party/devtools-frontend/src/front_end/third_party/wasmparser" ;ASL2.0
-    "third_party/devtools-frontend/src/front_end/third_party/web-vitals" ;Expat
     "third_party/devtools-frontend/src/third_party/i18n" ;ASL2.0
     "third_party/devtools-frontend/src/third_party/pyjson5" ;ASL2.0
 
@@ -182,7 +179,6 @@
     "third_party/farmhash" ;Expat
     "third_party/fast_float" ;ASL2.0, Boost1.0, Expat
     "third_party/fdlibm" ;non-copyleft
-    "third_party/federated_compute/chromium/fcp/confidentialcompute" ;ASL2.0
     "third_party/federated_compute/src/fcp/base" ;ASL2.0
     "third_party/federated_compute/src/fcp/confidentialcompute" ;ASL2.0
     "third_party/federated_compute/src/fcp/protos/confidentialcompute" ;ASL2.0
@@ -191,9 +187,7 @@
     "third_party/fft2d" ;non-copyleft
     "third_party/flatbuffers" ;ASL2.0
     "third_party/fp16" ;Expat
-    "third_party/freetype" ;GPL2.0
     "third_party/fusejs" ;ASL2.0
-    "third_party/fxdiv" ;Expat
     "third_party/gemmlowp" ;ASL2.0
     "third_party/google_input_tools" ;ASL2.0
     "third_party/google_input_tools/third_party/closure_library" ;ASL2.0
@@ -202,9 +196,6 @@
     "third_party/harfbuzz-ng" ;Expat
     "third_party/highway" ;ASL2.0
     "third_party/hunspell" ;MPL1.1/GPL2+/LGPL2.1+
-    "third_party/hyphenation-patterns" ;Expat
-    ;; FIXME: Our icu does not have some headers such as udatamem.h.
-    "third_party/icu" ;Unicode3.0
     "third_party/ink" ;ASL2.0
     "third_party/ink_stroke_modeler" ;ASL2.0
     "third_party/inspector_protocol" ;BSD-3
@@ -217,13 +208,12 @@
     "third_party/libaddressinput" ;ASL2.0
     "third_party/libaom" ;BSD-2 or "Alliance for Open Media Patent License 1.0"
     "third_party/libaom/source/libaom/third_party/fastfeat" ;BSD-3
+    "third_party/libaom/source/libaom/third_party/SVT-AV1" ;BSD-3
     "third_party/libaom/source/libaom/third_party/vector" ;Expat
     "third_party/libaom/source/libaom/third_party/x86inc" ;ISC
     "third_party/libdrm" ; Expat
     "third_party/libgav1" ;ASL2.0
     "third_party/libjingle_xmpp" ;BSD-3
-    "third_party/libpfm4" ;BSD
-    "third_party/libpng" ;PNG2.0
     "third_party/libphonenumber" ;ASL2.0
     "third_party/libsecret" ;LGPL2.1+
     "third_party/libsrtp" ;BSD-3
@@ -237,8 +227,6 @@
     "third_party/libvpx/source/libvpx/third_party/x86inc" ;Expat
 
     "third_party/libwebm" ;BSD-3
-    "third_party/libx11" ;BSD
-    "third_party/libxcb-keysyms" ;BSD
     "third_party/libxml/chromium" ;BSD-3
     "third_party/libyuv" ;BSD-3
     "third_party/libzip" ;BSD-3
@@ -256,7 +244,6 @@
     "third_party/modp_b64" ;BSD-3
     "third_party/nasm" ;BSD-2
     "third_party/nearby" ;ASL2.0
-    "third_party/neon_2_sse" ;BSD-2
     "third_party/node" ;Expat
     "third_party/oak/chromium/proto" ;ASL2.0
     "third_party/oak/chromium/proto/attestation" ;ASL2.0
@@ -264,20 +251,14 @@
     "third_party/one_euro_filter" ;BSD-3
     "third_party/openscreen" ;BSD-3
     "third_party/openscreen/src/third_party/tinycbor" ;Expat
-    "third_party/opus" ;BSD-3
     "third_party/ots" ;BSD-3
     "third_party/pdfium" ;BSD-3
     "third_party/pdfium/third_party/agg23" ;Expat
     "third_party/pdfium/third_party/bigint" ;Public domain, BSD-3
-    "third_party/pdfium/third_party/lcms" ;Expat
-    "third_party/pdfium/third_party/libopenjpeg" ;BDS-2
     "third_party/pdfium/third_party/libtiff" ;non-copyleft
     "third_party/pdfium/third_party/freetype/include/pstables.h" ;FreeType
     "third_party/perfetto" ;ASL2.0
     "third_party/perfetto/protos/third_party/chromium" ;BSD-3
-    "third_party/perfetto/protos/third_party/pprof" ;ASL2.0
-    "third_party/perfetto/protos/third_party/primes" ;ASL2.0
-    "third_party/perfetto/protos/third_party/simpleperf" ;ASL2.0
     "third_party/pffft" ;the "FFTPACK" license
     "third_party/ply" ;BSD-3
     "third_party/polymer" ;BSD-3
@@ -287,7 +268,6 @@
     "third_party/protobuf/third_party/utf8_range" ; Expat
     "third_party/pthreadpool" ;BSD-2
     "third_party/puffin" ;Non-copyleft
-    "third_party/pyyaml" ;Expat
     "third_party/pyjson5" ;ASL2.0
     "third_party/rapidhash" ;BSD-2
     "third_party/readability" ;ASL2.0
@@ -299,14 +279,11 @@
     "third_party/search_engines_data" ;BSD-3
     "third_party/securemessage" ;ASL2.0
     "third_party/selenium-atoms" ;ASL2.0
-    "third_party/sentencepiece" ;ASL2.0
-    "third_party/sentencepiece/src/third_party/darts_clone" ;BSD-3
     "third_party/shell-encryption" ;ASL2.0
     "third_party/simdutf" ;Non-copyleft
     "third_party/simplejson" ; Non-copyleft
-    "third_party/six" ;Expat
     "third_party/skia" ;BSD-3
-    "third_party/skia/include/third_party/vulkan" ;BSD-3
+    "third_party/skia/third_party/vulkanmemoryallocator" ;BSD-3, Expat
     "third_party/smhasher" ;Expat, public domain
 
     ;; FIXME: the snappy "replacement" shim (see replace_gn_files.py below) does
@@ -361,6 +338,7 @@
     "third_party/webrtc/modules/third_party/fft" ;Non-copyleft
     "third_party/webrtc/modules/third_party/g711" ;Public domain
     "third_party/webrtc/modules/third_party/g722" ;Public domain
+    "third_party/webrtc/rtc_base/third_party/sigslot" ;Public domain
     "third_party/widevine/cdm/widevine_cdm_common.h" ;BSD-3
     "third_party/woff2" ;ASL2.0
     "third_party/wuffs" ;ASL2.0
@@ -394,7 +372,7 @@
   ;; run the Blink performance tests, just remove everything to save ~70MiB.
   '("third_party/blink/perf_tests"))
 
-(define %chromium-version "147.0.7727.137")
+(define %chromium-version "141.0.7390.65")
 (define %ungoogled-revision (string-append %chromium-version "-1"))
 (define %debian-revision (string-append "debian/" %ungoogled-revision))
 
@@ -406,7 +384,7 @@
     (file-name (git-file-name "ungoogled-chromium" %ungoogled-revision))
     (sha256
      (base32
-      "1ha84j3zckdv2l8dpicqhmr6a8mq3bqwalw0bmgamvlmns9i7nrj"))))
+      "1hk4rww2gccly1qv0xnswd77haj02rlza82403dxdjm8fkdfndy6"))))
 
 (define %debian-origin
   (origin
@@ -419,7 +397,7 @@
                                 ((_ version) version))))
     (sha256
      (base32
-      "04lqbclkvn9nsksgjpjilh78a8y17mwwq4pmhr6h8gvpp2y3bhhc"))))
+      "06s3kvwb3490xb28n6r3q5n1c0ylsvchiw6s4h1rrp8jqzwjbmc6"))))
 
 (define (origin-file origin file)
   (computed-file
@@ -432,38 +410,26 @@
 
 (define %debian-patches
   (map debian-patch
-       '("bookworm/foreach.patch"
-         "debianization/safe-libcxx.patch"
-         "disable/enterprise-tests.patch"
+       '("bookworm/clang19.patch"
+         "bookworm/foreach.patch"
          "disable/node-version-ck.patch"
-         "disable/rustc-allow-features.patch"
-         "fixes/bytemuck.patch"
          "fixes/gentoo-stylesheet.patch"
          "fixes/libcpp-headers.patch"
-         "fixes/libpng-testonly.patch"
          "fixes/rust-clanglib.patch"
-         "llvm-19/clang19.patch"
-         "llvm-19/clone-traits.patch"
-         "llvm-19/keyfactory.patch"
-         "llvm-19/value-or.patch"
-         "llvm-22/ignore-for-ubsan.patch"
          "system/openjpeg.patch"
-         "trixie/cookie-string-view.patch"
-         "trixie/nodejs-main.patch")))
+         ;; Remove after rust is past
+         ;; <https://github.com/rust-lang/rust/pull/141061>.
+         "trixie/rust-no-alloc-shim.patch")))
 
 (define %guix-patches
   (list (local-file
-         (assume-valid-file-name
-          (search-patch
-           "ungoogled-chromium-custom-compiler.patch")))
-        (local-file
-         (assume-valid-file-name
-          (search-patch
-           "ungoogled-chromium-empty-parsed-rustc-args.patch")))
-        (local-file
          (assume-valid-file-name
           (search-patch
            "ungoogled-chromium-extension-search-path.patch")))
+        (local-file
+         (assume-valid-file-name
+          (search-patch
+           "ungoogled-chromium-unbundle-icu-target.patch")))
         (local-file
          (assume-valid-file-name
           (search-patch
@@ -534,8 +500,9 @@
              "#if 0"))
           (invoke "python" "build/linux/unbundle/replace_gn_files.py"
                   "--system-libraries" "flac" "fontconfig" "freetype"
-                  "harfbuzz-ng" "libjpeg" "libpng" "libwebp" "libxml"
-                  "libxslt" "openh264" "opus" "zlib")))))
+                  "harfbuzz-ng" "icu" "libjpeg"
+                  "libpng" "libwebp" "libxml" "libxslt" "openh264" "opus"
+                  "zlib")))))
 
 (define opus+custom
   (package/inherit opus
@@ -564,7 +531,7 @@
                                   %chromium-version "-lite.tar.xz"))
               (sha256
                (base32
-                "1m22whg5n9lw9gqhalm95jwfm45lqp4a7cs3mn3f4n8w0rvr0r5j"))
+                "09iwglswnr6d45zz3zsjw7jpm1xlwwkxlz9h5nlhqxyd933a04fq"))
               (modules '((guix build utils)))
               (snippet (force ungoogled-chromium-snippet))))
     (build-system gnu-build-system)
@@ -581,7 +548,6 @@
       ;; directory for an exhaustive list of supported flags.
       ;; (Note: The 'configure' phase will do that for you.)
       #~(list "is_debug=false"
-              "is_component_build=false"
               ;; Use the "official" release optimizations, as opposed to
               ;; a developer build.
               "is_official_build=true"
@@ -589,8 +555,6 @@
               "use_clang_modules=false"
               "use_custom_libcxx=false" ; support for this is deprecated and to be removed.
               "optimize_webui=false"
-              "webnn_use_tflite=false"
-              "build_tflite_with_xnnpack=false"
               "safe_browsing_use_unrar=false"
               "chrome_pgo_phase=0"
               "use_sysroot=false"
@@ -608,10 +572,12 @@
               "enable_service_discovery=false"
               "enable_vr=false"
               "enable_enterprise_companion=false"
+              "enable_glic=false"
               "enable_iterator_debugging=false"
               "enable_hangout_services_extension=false"
               "enable_widevine=false"
-              "fatal_linker_warnings=false"
+              ;; Disable type-checking for the Web UI to avoid a Java dependency.
+              "enable_js_type_check=false"
               ;; Disable code using TensorFlow until it has been scrutinized
               ;; by the ungoogled project.
               "build_with_tflite_lib=false"
@@ -623,11 +589,6 @@
               "angle_has_histograms=false"
               "angle_build_tests=false"
               "build_angle_perftests=false"
-              "enable_perfetto_unittests=false"
-              "skia_enable_skshapper_tests=false"
-              "tint_build_unittests=false"
-              "enable_nocompile_tests=false"
-              "enable_screen_ai_browsertests=false"
 
               "clang_warning_suppression_file=\"\""
 
@@ -636,8 +597,6 @@
               "is_cfi=false"
 
               "symbol_level=0"
-              "blink_symbol_level=0"
-              "v8_symbol_level=0"
               "v8_enable_backtrace=false"
 
               ;; Define a custom toolchain that simply looks up CC, AR and
@@ -669,10 +628,26 @@
                              ;; invokation and fails if it's just the version number.
                              " (f6e511eec 2024-10-15) (built from a source tarball)\"")
 
+              ;; Chromium's build/rust/std/BUILD.gn has a hardcoded
+              ;; list of stdlib rlibs (stdlib_files) that GN uses to
+              ;; declare build outputs.  GN requires static output
+              ;; declarations, so the list must exactly match what
+              ;; rlibs exist in the Rust sysroot.  Chromium's list
+              ;; includes unicode_width because their bundled
+              ;; toolchain (Rust 1.89) ships it as a dependency of
+              ;; getopts 0.2.23.  Our Rust 1.93 has getopts 0.2.24
+              ;; which dropped that dependency, so unicode_width is
+              ;; not in our sysroot.  This GN arg removes it from
+              ;; the list.  (Chromium's own use of unicode_width via
+              ;; codespan-reporting is a separate vendored copy under
+              ;; third_party/rust/chromium_crates_io/ and is
+              ;; unaffected.)
+              "removed_rust_stdlib_libs=[\"unicode_width\"]"
+
               ;; Prefer system libraries.
               "use_system_freetype=true"
               "use_system_harfbuzz=true"
-              "use_system_icu=false"
+              "use_system_icu=true"
               "use_system_lcms2=true"
               "use_system_libffi=true"
               "use_system_libjpeg=true"
@@ -683,7 +658,7 @@
               "use_gnome_keyring=false" ;deprecated by libsecret
               "use_pulseaudio=true"
               "link_pulseaudio=true"
-              "icu_use_data_file=true"
+              "icu_use_data_file=false"
 
               ;; VA-API acceleration is currently only supported on x86_64-linux.
               #$@(if (string-prefix? "x86_64" (or (%current-target-system)
@@ -691,13 +666,6 @@
                      '("use_vaapi=true")
                      '())
 
-              #$@(if (string-prefix? "aarch64" (or (%current-target-system)
-                                                   (%current-system)))
-                     '("use_v4l2_codec=true"
-                       "use_vaapi=false"
-                       "use_av1_hw_decoder=true")
-                     '())
-
               ;; Do not artificially restrict formats supported by system ffmpeg.
               "proprietary_codecs=true"
               "ffmpeg_branding=\"Chrome\""
@@ -745,9 +713,9 @@
 
                 ;; Many files try to include ICU headers from "third_party/icu/...".
                 ;; Remove the "third_party/" prefix to use system headers instead.
-                ;(substitute* (find-files "chrome" "\\.cc$")
-                ;  (("third_party/icu/source/(common|i18n)/")
-                ;   ""))
+                (substitute* (find-files "chrome" "\\.cc$")
+                  (("third_party/icu/source/(common|i18n)/")
+                   ""))
 
                 ;; XXX: Should be unnecessary when use_system_lcms2=true.
                 (substitute* "third_party/pdfium/core/fxcodec/icc/icc_transform.h"
@@ -764,13 +732,15 @@
                   (("include \"third_party/curl")
                    "include \"curl"))
 
-                ;; Our clang libs and rustfmt are not under bindgen root directory.
-                (substitute* '("build/rust/rust_bindgen_generator.gni"
-                               "build/rust/rust_bindgen.gni")
+                ;; Unknown flags as of clang-19, can be removed when building with
+                ;; newer clang.
+                (substitute* "build/config/compiler/BUILD.gn"
+                  (("-gsimple-template-names") ""))
+
+                ;; Clang libs are not under bindgen root directory.
+                (substitute* "build/rust/rust_bindgen_generator.gni"
                   (("(_libclang_path = )rust_bindgen_root" _ libclang)
-                   (string-append libclang "clang_base_path"))
-                  (("(_rustfmt_path = \")\\$\\{rust_bindgen_root\\}" _ rustfmt)
-                   (string-append rustfmt "${rust_sysroot_absolute}"))))))
+                   (string-append libclang "clang_base_path"))))))
           (add-after 'patch-stuff 'add-absolute-references
             (lambda* (#:key inputs #:allow-other-keys)
               (let ((cups-config (search-input-file inputs "/bin/cups-config"))
@@ -793,22 +763,13 @@
           (add-after 'add-absolute-references 'adjust-CPLUS_INCLUDE_PATH
             ;; The libcxx include/c++/v1 directory is not exposed via
             ;; CPLUS_INCLUDE_PATH by default, causing errors like
-            ;; "fatal error: 'format' file not found".  Also clang is
-            ;; unable to find gcc's bits/c++config.h which is machine
-            ;; dependent.
+            ;; "fatal error: 'format' file not found".
             (lambda* (#:key native-inputs inputs #:allow-other-keys)
-              (let* ((libcxx-v1 (search-input-directory inputs
-                                                        "include/c++/v1"))
-                     (target-system  #$(nix-system->gnu-triplet
-                                         (or (%current-target-system)
-                                             (%current-system))))
-                     (target-include (string-append "include/c++/"
-                                                    target-system))
-                     (gcc-bits  (search-input-directory inputs
-                                                        target-include)))
-                (setenv "CPLUS_INCLUDE_PATH"
-                        (string-append libcxx-v1 ":" gcc-bits ":"
-                         (getenv "CPLUS_INCLUDE_PATH"))))))
+              (setenv "CPLUS_INCLUDE_PATH"
+                      (string-append
+                       (search-input-directory inputs
+                                               "/include/c++/v1")
+                       ":" (getenv "CPLUS_INCLUDE_PATH")))))
           (add-before 'configure 'prepare-build-environment
             (lambda* (#:key native-inputs inputs #:allow-other-keys)
               (let ((node (search-input-file (or native-inputs inputs)
@@ -889,15 +850,13 @@
                                        "resources.pak"
                                        "v8_context_snapshot.bin"
                                        "chrome_crashpad_handler"
-                                       "icudtl.dat"
 
                                        ;; Swiftshader ICD.
                                        "libvk_swiftshader.so"
                                        "vk_swiftshader_icd.json"
 
-                                       ;; Chromium ships its own libGL and
-                                       ;; vulkan implementation called ANGLE.
-                                       "libvulkan.so.1"
+                                       ;; Chromium ships its own libGL
+                                       ;; implementation called ANGLE.
                                        "libEGL.so" "libGLESv2.so"))
                      (locales        (string-append lib "/locales"))
                      (resources      (string-append lib "/resources"))
@@ -913,11 +872,9 @@
 
                 (substitute* '("chrome/app/resources/manpage.1.in"
                                "chrome/installer/linux/common/desktop.template")
-                  (("@@MENUNAME") "Chromium")
-                  (("@@PACKAGE") "chromium")
-                  (("/usr/bin/@@usr_bin_symlink_name") exe)
-                  (("@@uri_scheme") "x-scheme-handler/chromium;")
-                  (("@@extra_desktop_entries") ""))
+                  (("@@MENUNAME@@") "Chromium")
+                  (("@@PACKAGE@@") "chromium")
+                  (("/usr/bin/@@USR_BIN_SYMLINK_NAME@@") exe))
 
                 (mkdir-p man)
                 (copy-file "chrome/app/resources/manpage.1.in"
@@ -998,7 +955,7 @@
            glib
            gtk+
            harfbuzz
-           icu4c-77
+           icu4c
            lcms
            libcxx
            libffi

gnu/packages/cinnamon.scm

@@ -253,7 +253,7 @@ as well as some desktop-wide documents.")
            pkg-config
            xorg-server-for-tests))
     (inputs
-     (list at-spi2-core
+     (list atk
            cinnamon-desktop
            exempi
            gsettings-desktop-schemas

gnu/packages/clojure.scm

@@ -377,14 +377,14 @@ designs.")
 (define-public clojure-tools
   (package
     (name "clojure-tools")
-    (version "1.12.4.1618")
+    (version "1.12.4.1582")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://download.clojure.org/install/clojure-tools-"
                            version
                            ".tar.gz"))
-       (sha256 (base32 "08fy3k248sbsrbgl0lq3q4d23vp4chdawy230ardx61sssk9sxhk"))
+       (sha256 (base32 "08gzfblnz0zhnk6pwr9vcm6y168psgrwmqww3wqk1v7j5gr68n7x"))
        ;; Remove AOT compiled JAR.  The other JAR only contains uncompiled
        ;; Clojure source code.
        (snippet
@@ -512,7 +512,7 @@ defining and using monads and useful monadic functions.")
 (define-public clojure-core-async
   (package
     (name "clojure-core-async")
-    (version "1.9.865")
+    (version "1.8.741")
     (home-page "https://github.com/clojure/core.async")
     (source (origin
               (method git-fetch)
@@ -522,7 +522,7 @@ defining and using monads and useful monadic functions.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "15pc2m58fscix85gsiwl9dlvw2x6alvc4qni46rry2sr00nfzd3r"))))
+                "1m6lir2xr119yxz483cz0rfw4k3a40qmmsiwl2y7kyxy65vab60z"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure")
@@ -546,7 +546,7 @@ work on Communicating Sequential Processes (CSP).")
 (define-public clojure-core-cache
   (package
     (name "clojure-core-cache")
-    (version "1.2.263")
+    (version "1.2.249")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -555,7 +555,7 @@ work on Communicating Sequential Processes (CSP).")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "19q81aki8wb120v6jfylwqgf965mwkhrpcsrs5zazjfjv8vq6glx"))))
+                "0hdwv5dsx49i12riz3frzshwkgw26ah43667lzga2n6zgpmrh8ii"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure")
@@ -598,7 +598,7 @@ It supports Clojure 1.5.1 and later as well as ClojureScript.")
 (define-public clojure-core-memoize
   (package
     (name "clojure-core-memoize")
-    (version "1.2.281")
+    (version "1.2.273")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -607,7 +607,7 @@ It supports Clojure 1.5.1 and later as well as ClojureScript.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0bnlqs7m69svhfadwy46wgc88j9ma9fhdk4586b4xxppamj6c5j4"))))
+                "009fj19y464an66pryygmqbnx2dqk5wkp40rbkbgkir0ax0k6j3y"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure")
@@ -734,7 +734,7 @@ maps also support conj/peek/pop operations.")
 (define-public clojure-data-xml
   (package
     (name "clojure-data-xml")
-    (version "0.2.0-alpha11")
+    (version "0.2.0-alpha10")
     (home-page "https://github.com/clojure/data.xml")
     (source (origin
               (method git-fetch)
@@ -744,7 +744,7 @@ maps also support conj/peek/pop operations.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0k7hq3s4zbk0ryhgycivl1dk22fzh60522a57az8ykmixhqjxwhg"))))
+                "0mnhgrh20p2wwmq8a4631dkpxbgbijwi6sfhw5v784hzkjkfgkh6"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure")
@@ -862,7 +862,7 @@ tree.
 (define-public clojure-tools-analyzer
   (package
     (name "clojure-tools-analyzer")
-    (version "1.2.2")
+    (version "1.2.1")
     (home-page "https://github.com/clojure/tools.analyzer")
     (source (origin
               (method git-fetch)
@@ -872,7 +872,7 @@ tree.
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "07cxphrmd6a3clnalrdqxlyin8l0lw0xhjy2rh9gaizxfv5c23jp"))))
+                "0apa3gc45rmdj19plbvglpj6i9dadkgvvidj5mcnkzi9y3h0nr27"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure")
@@ -938,7 +938,7 @@ tools.analyzer, providing additional JVM-specific passes.")
 (define-public clojure-tools-cli
   (package
     (name "clojure-tools-cli")
-    (version "1.4.256")
+    (version "1.3.250")
     (home-page "https://github.com/clojure/tools.cli")
     (source (origin
               (method git-fetch)
@@ -947,7 +947,7 @@ tools.analyzer, providing additional JVM-specific passes.")
                     (commit (string-append "v" version))))
               (file-name (git-file-name name version))
               (sha256
-               (base32 "1kr1cpypzgzh8pkih5qamsaq8c96jfpcvmn9f330sic2shb53m55"))))
+               (base32 "1nyw33w83gd7xlbpma03p4jwcdcp38h8y99x2rqw4zcnw19gsz4p"))))
     (build-system clojure-build-system)
     (arguments
      '(#:source-dirs '("src/main/clojure/")
@@ -959,25 +959,29 @@ tools.analyzer, providing additional JVM-specific passes.")
 work with command-line arguments.")
     (license license:epl1.0)))
 
-(define-public clojure-tools-deps-edn
+(define-public clojure-tools-deps
   (package
-    (name "clojure-tools-deps-edn")
-    (version "0.9.22")
-    (home-page "https://github.com/clojure/tools.deps.edn")
+    (name "clojure-tools-deps")
+    (version "0.28.1578")
+    (home-page "https://github.com/clojure/tools.deps")
     (source (origin
               (method git-fetch)
               (uri (git-reference
-                     (url home-page)
-                     (commit (string-append "v" version))))
+                    (url home-page)
+                    (commit (string-append "v" version))))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "082p6zpbb8vvdc9ncc0d66h3g7sax4pp0h4fymwiv0lakzyq3g9g"))))
+                "1w3f8cl81q4kln6iz74fnfzms4c4x279ivh1962pcg22q8l1w8d5"))))
     (build-system clojure-build-system)
     (arguments
      `(#:source-dirs '("src/main/clojure" "src/main/resources")
+       #:java-source-dirs '("src/main/java")
        #:test-dirs '("src/test/clojure")
        #:doc-dirs '()
+       ;; FIXME: Could not initialize class
+       ;; org.eclipse.aether.transport.http.SslSocketFactory
+       #:tests? #f
        #:phases
        (modify-phases %standard-phases
          (add-before 'build 'reference-clojure-jar-input
@@ -988,42 +992,12 @@ work with command-line arguments.")
                 (string-append "org.clojure/clojure {:local/root \""
                                (assoc-ref inputs "clojure")
                                "/share/java/clojure.jar\"}"))))))))
-    (synopsis "Reader for @file{deps.edn}")
-    (description "This package provides support for reading and manipulating
-@file{deps.edn} files and data structures.  It can be used in scenarios where
-the @code{tools.deps} library is not needed for dep expansion.")
-    (license license:epl1.0)))
-
-(define-public clojure-tools-deps
-  (package
-    (name "clojure-tools-deps")
-    (version "0.29.1598")
-    (home-page "https://github.com/clojure/tools.deps")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url home-page)
-                    (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1qds0ri6y8s7419x3pzl9yhhr19qli3l52yg9a78w47h0w6dd1kv"))))
-    (build-system clojure-build-system)
-    (arguments
-     `(#:source-dirs '("src/main/clojure" "src/main/resources")
-       #:java-source-dirs '("src/main/java")
-       #:test-dirs '("src/test/clojure")
-       #:doc-dirs '()
-       ;; FIXME: Could not initialize class
-       ;; org.eclipse.aether.transport.http.SslSocketFactory
-       #:tests? #f))
     (propagated-inputs (list maven-3.8-core
                              maven-resolver-1.6-connector-basic
                              maven-resolver-1.6-transport-http
                              maven-resolver-1.6-transport-file
                              clojure-tools-gitlibs
                              clojure-tools-cli
-                             clojure-tools-deps-edn
                              clojure-data-xml
                              cognitect-aws-api))
     (synopsis "Clojure library supporting clojure-tools")
@@ -1201,7 +1175,7 @@ asynchronous support.")
 (define-public cognitect-aws-api
   (package
     (name "cognitect-aws-api")
-    (version "0.8.824")
+    (version "0.8.800")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1210,7 +1184,7 @@ asynchronous support.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0ivlcmsr7rvr7741k9wzniv2zxijida0b588nqngm5vrgna816yl"))
+                "17sxj3mvq4iasr0kchbx2anmrh25v8bvmpam4si704vksmnm28p3"))
               (modules '((guix build utils)))
               (snippet
                '(begin

gnu/packages/code.scm

@@ -1,8 +1,8 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2012-2013, 2015, 2018, 2020, 2021, 2023, 2025 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2013, 2015, 2018, 2020, 2021, 2023 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2013, 2015 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2015, 2018 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2016, 2017, 2018, 2019-2024 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2017, 2019-2024 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2017, 2018 Clément Lassieur <clement@lassieur.org>
 ;;; Copyright © 2017 Andy Wingo <wingo@igalia.com>
@@ -695,6 +695,57 @@ Kcov uses DWARF debugging information for compiled programs to make it
 possible to collect coverage information without special compiler switches.")
     (license license:gpl2+)))
 
+(define-public rtags
+  (package
+    (name "rtags")
+    (version "2.18")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/Andersbakken/rtags")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (patches (search-patches "rtags-separate-rct.patch"))
+       (modules '((guix build utils)))
+       (snippet
+        ;; Part of spliting rct with rtags.
+        ;; Substitute #include "rct/header.h" with #include <rct/header.h>.
+        '(with-directory-excursion "src"
+           (delete-file-recursively "rct")        ;remove bundled copy
+           (let ((files (find-files "." ".*\\.cpp|.*\\.h")))
+             (substitute* files
+               (("#include ?\"rct/(.*.h)\"" all header)
+                (string-append "#include <rct/" header ">")))
+             #t)))
+       (sha256
+        (base32
+         "0raqjbkl1ykga4ahgl9xw49cgh3cyqcf42z36z7d6fz1fw192kg0"))))
+    (build-system cmake-build-system)
+    (arguments
+     '(#:build-type "RelWithDebInfo"
+       #:configure-flags
+       '("-DRTAGS_NO_ELISP_FILES=1")
+       #:tests? #f))
+    (native-inputs
+     (list pkg-config))
+    (inputs
+     (list bash-completion
+           clang
+           llvm
+           lua
+           rct
+           selene))
+    (home-page "https://github.com/Andersbakken/rtags")
+    (synopsis "Indexer for the C language family with Emacs integration")
+    (description
+     "RTags is a client/server application that indexes C/C++ code and keeps a
+persistent file-based database of references, declarations, definitions,
+symbolnames etc.  There’s also limited support for ObjC/ObjC++.  It allows you
+to find symbols by name (including nested class and namespace scope).  Most
+importantly we give you proper follow-symbol and find-references support.")
+    (license license:gpl3+)))
+
 (define-public colormake
   (package
     (name "colormake")
@@ -866,46 +917,6 @@ Objective@tie{}C, D, Java, Pawn, and Vala).  Features:
 the C, C++, C++/CLI, Objective‑C, C#, and Java programming languages.")
     (license license:lgpl3+)))
 
-(define-public idutils
-  (package
-    (name "idutils")
-    (version "4.6")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "mirror://gnu/idutils/idutils-" version ".tar.xz"))
-       (sha256
-        (base32 "1hmai3422iaqnp34kkzxdnywl7n7pvlxp11vrw66ybxn9wxg90c1"))
-       (modules '((guix build utils)))
-       (snippet
-        '(begin
-           (substitute* (find-files "lib" "\\.c$")
-             (("#if defined _IO_ftrylockfile")
-              "#if defined _IO_EOF_SEEN"))
-           (substitute* "lib/stdio-impl.h"
-             (("^/\\* BSD stdio derived implementations")
-              (string-append
-               "#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN" "\n"
-               "# define _IO_IN_BACKUP 0x100\n" "#endif\n\n"
-               "/* BSD stdio derived implementations")))
-
-           ;; 'gets' is deprecated in glibc 2.33 and its declaration is
-           ;; no longer visible by default from <stdio.h>.
-           (substitute* "lib/stdio.in.h"
-             (("_GL_WARN_ON_USE \\(gets.*")
-              ""))))))
-    (build-system gnu-build-system)
-    (native-inputs (list emacs-minimal))
-    (home-page "https://www.gnu.org/software/idutils/")
-    (synopsis "Identifier database utilities")
-    (description
-     "The GNU idutils package includes tools to create an index of textual
-tokens used in a list of file names and then to query that index.  Thus, it
-allows the user to, for example, find all the uses of a particular function
-in a large programming project.  In addition to handling textual tokens, it
-can also handle numeric constants and the contents of character strings.")
-    (license license:gpl3+)))
-
 (define-public indent
   ;; XXX: Not released anymore, but some patches fix CVEs.
   (let ((commit "1737c929cbe2ec8a181107df9742894a44c57f71")

gnu/packages/codex.scm

@@ -18,10 +18,10 @@
 
 ;;; This module is separate from (gnu packages rust-apps) to avoid a
 ;;; circular module dependency: (gnu packages rust-sources), which
-;;; defines rust-codex-0.124.0, transitively loads (gnu packages
+;;; defines rust-codex-0.98.0, transitively loads (gnu packages
 ;;; rust-apps) through its #:use-module chain.  If the codex package
 ;;; lived in rust-apps.scm, loading rust-sources would trigger loading
-;;; rust-apps before rust-codex-0.124.0 is defined, causing an unbound
+;;; rust-apps before rust-codex-0.98.0 is defined, causing an unbound
 ;;; variable error.
 
 (define-module (gnu packages codex)
@@ -36,46 +36,33 @@
   #:use-module (gnu packages base)
   #:use-module (gnu packages cmake)
   #:use-module (gnu packages compression)
-  #:use-module (gnu packages linux)
   #:use-module (gnu packages libunwind)
   #:use-module (gnu packages llvm)
-  #:use-module (gnu packages lsof)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages python)
   #:use-module (gnu packages rust-sources)
   #:use-module (gnu packages sqlite)
-  #:use-module (gnu packages textutils)
-  #:use-module (gnu packages nss)
   #:use-module (gnu packages tls)
-  #:use-module (gnu packages version-control)
-  #:use-module (gnu packages virtualization))
+  #:use-module (gnu packages version-control))
 
 (define-public codex
   (package
     (name "codex")
-    (version (package-version rust-codex-0.124.0))
+    (version (package-version rust-codex-0.98.0))
     (source
      (origin
-       (inherit (package-source rust-codex-0.124.0))
+       (inherit (package-source rust-codex-0.98.0))
        (patches (search-patches
-                 "codex-acp-0.11.1-disable-code-mode.patch"
-                 "rust-codex-0.124.0-code-mode-stub-toolname.patch"
-                 "rust-codex-0.124.0-remove-patch-sections.patch"
-                 "rust-codex-0.120.0-remove-libwebrtc.patch"
+                 "codex-0.98.0-remove-patch-sections.patch"
                  "rust-codex-0.98.0-test-shebangs.patch"
-                 "rust-codex-0.120.0-test-timeout.patch"))))
+                 "rust-codex-0.98.0-test-timeout.patch"))))
     (build-system cargo-build-system)
     (arguments
      (list
       #:install-source? #f
-      ;; exec-server is library-only in 0.124 (no [[bin]] in
-      ;; exec-server/Cargo.toml); cargo install --path exec-server fails
-      ;; with "no packages found with binaries or examples".  Drop it
-      ;; from the install paths -- the library is consumed via the
-      ;; workspace by other binaries here, not installed standalone.
-      #:cargo-install-paths '(list "cli" "exec"
-                                   "linux-sandbox" "mcp-server"
+      #:cargo-install-paths '(list "cli" "exec" "exec-server"
+                                   "linux-sandbox" "mcp-server" "network-proxy"
                                    "app-server" "tui")
       ;; schema_fixtures_match_generated (upstream fixture is stale:
       ;; FileChange::Update in codex-protocol gained old_content,
@@ -84,55 +71,72 @@
       #:cargo-test-flags '(list "--workspace"
                                 "--exclude" "codex-app-server-protocol"
                                 "--"
-                                ;;; BEGIN Landlock returns NotEnforced
-                                ;;; in the build container; the sandbox
-                                ;;; binary panics instead of cleanly
-                                ;;; denying filesystem access.
-                                ;; Sandbox denial and escalation tests.
+                                ;; These tests exercise sandbox denial and
+                                ;; escalation, which requires Landlock to
+                                ;; cleanly deny filesystem access.  Inside the
+                                ;; build container Landlock returns NotEnforced
+                                ;; and the sandbox binary panics instead.
+                                ;; Disabling Landlock would not help either,
+                                ;; since these tests need a working sandbox to
+                                ;; have anything to deny and escalate.
                                 "--skip" "sandbox_denied_shell_returns_original_output"
-                                ;; Sandbox denial and escalation tests.
                                 "--skip" "shell_escalated_permissions_rejected_then_ok"
-                                ;; Sandbox denial and escalation tests.
                                 "--skip" "unified_exec_runs_under_sandbox"
-                                ;; codex-exec: spawn_command_under_linux_sandbox
-                                ;; panics with LandlockRestrict (exit 101).
+                                ;; These tests (in codex-exec) directly call
+                                ;; spawn_command_under_linux_sandbox to verify
+                                ;; that python and bash work correctly inside
+                                ;; the Landlock sandbox.  The sandbox binary
+                                ;; (codex-exec) panics with LandlockRestrict
+                                ;; (exit code 101) before the inner command
+                                ;; even starts.
                                 "--skip" "python_getpwuid_works_under_sandbox"
-                                ;; Same as above.
                                 "--skip" "python_multiprocessing_lock_works_under_sandbox"
-                                ;; Same as above.
                                 "--skip" "sandbox_distinguishes_command_and_policy_cwds"
-                                ;; linux-sandbox: process_exec_tool_call
-                                ;; invokes Landlock; same panic.
+                                ;; These linux-sandbox tests directly invoke
+                                ;; the Landlock sandbox via
+                                ;; process_exec_tool_call; same root cause.
                                 "--skip" "test_writable_root"
-                                ;; Same as above.
                                 "--skip" "test_timeout"
-                                ;; Same as above.
                                 "--skip" "test_root_read"
-                                ;; Same as above.
                                 "--skip" "test_dev_null_write"
-                                ;; Same as above.
                                 "--skip" "test_no_new_privs_is_enabled"
-                                ;; One scenario runs through Landlock
-                                ;; which panics; cargo --skip cannot
-                                ;; target individual scenarios.
+                                ;; This test iterates many approval scenarios;
+                                ;; one of them
+                                ;; (danger_full_access_on_request_allows_network)
+                                ;; runs a command through the Landlock sandbox
+                                ;; binary, which panics with LandlockRestrict
+                                ;; inside the build container.  Cargo --skip
+                                ;; cannot target individual scenarios, so we
+                                ;; skip the entire matrix.
                                 "--skip" "approval_matrix_covers_all_modes"
-                                ;; Landlock panic triggers escalation-retry
-                                ;; which interferes with the approval cache.
+                                ;; This test verifies session-level patch
+                                ;; approval caching: approve once, skip
+                                ;; future prompts for the same file.  When
+                                ;; Landlock is unavailable (as in the Guix
+                                ;; build container) the sandbox binary panics,
+                                ;; triggering the escalation-retry path, which
+                                ;; interferes with the approval cache and
+                                ;; causes a spurious re-prompt on the second
+                                ;; patch.
                                 "--skip" "approving_apply_patch_for_session_skips_future_prompts_for_same_file"
                                 ;; These tests expect to interrupt a
                                 ;; long-running 'sleep 60' and receive
-                                ;; TurnAborted.  What happens:
+                                ;; TurnAborted.  Default test config is
+                                ;; OnRequest + ReadOnly.  What happens:
                                 ;;
                                 ;; 1. ReadOnly wraps the command with
                                 ;;    codex-linux-sandbox (Landlock-based).
-                                ;; 2. Landlock is unavailable, so the
-                                ;;    sandbox binary exits instantly.
+                                ;; 2. Landlock is unavailable in the Guix
+                                ;;    build container, so the sandbox
+                                ;;    binary exits instantly (~1 ms).
                                 ;; 3. Orchestrator gets SandboxErr::Denied.
                                 ;;    wants_no_sandbox_approval(OnRequest)
-                                ;;    returns false, so no escalation --
-                                ;;    denial returned directly.
+                                ;;    returns false (sandboxing.rs:222),
+                                ;;    so no escalation -- denial returned
+                                ;;    directly.
                                 ;; 4. ToolEmitter::finish sends the error
-                                ;;    to the mock model.
+                                ;;    to the mock model as
+                                ;;    function_call_output.
                                 ;; 5. Second mock SSE response fires,
                                 ;;    turn finishes with TurnComplete.
                                 ;; 6. Op::Interrupt arrives 100 ms later,
@@ -146,370 +150,74 @@
                                 ;; has only one mock response (so the turn
                                 ;; cannot complete first).
                                 "--skip" "interrupt_persists_turn_aborted_marker_in_next_request"
-                                ;; Same causal chain as above.
                                 "--skip" "interrupt_tool_records_history_entries"
-                                ;; WorkspaceWrite sandbox policy wraps
-                                ;; commands with codex-linux-sandbox;
-                                ;; Landlock panics, command never runs,
-                                ;; exit_code is None instead of Some(0).
-                                "--skip" "request_permissions_grants_apply_to_later_exec_command_calls"
-                                ;; Same root cause.
-                                "--skip" "request_permissions_grants_apply_to_later_shell_command_calls"
-                                ;; Same root cause.
-                                "--skip" "partial_request_permissions_grants_do_not_preapprove_new_permissions"
-                                ;;; END Landlock
-                                ;;; BEGIN mcp_process.rs initialize
-                                ;;; assertion expects "version":"0.0.0"
-                                ;;; but the server returns "0.120.0".
+                                ;; Upstream bug: test hardcodes "0.0.0" in the
+                                ;; expected user-agent string but the workspace
+                                ;; version is "0.98.0".
+                                "--skip" "get_user_agent_returns_current_codex_user_agent"
+                                ;; Same upstream bug: mcp-server tests
+                                ;; check the initialize response which
+                                ;; includes "version": "0.0.0" but the
+                                ;; server returns "0.98.0".
                                 "--skip" "test_codex_tool_passes_base_instructions"
                                 "--skip" "test_shell_command_approval_triggers_elicitation"
                                 "--skip" "test_patch_approval_triggers_elicitation"
-                                ;;; END version mismatch
-                                ;;; BEGIN Test isolation bug:
-                                ;;; unique_temp_dir() in
-                                ;;; state/src/runtime.rs names dirs
-                                ;;; using nanosecond timestamps, so
-                                ;;; parallel tests can collide.  The
-                                ;;; SQLite migration runs CREATE TABLE
-                                ;;; threads (without IF NOT EXISTS),
-                                ;;; so the second init panics with
-                                ;;; "table threads already exists".
+                                ;; These codex-exec-server tests need
+                                ;; "dotslash", a Meta tool that lazily
+                                ;; downloads pre-built binaries from a
+                                ;; JSON manifest.  The test helper
+                                ;; create_transport runs
+                                ;; `dotslash -- fetch <path>` to obtain a
+                                ;; custom bash binary described in
+                                ;; exec-server/tests/suite/bash.
+                                ;; dotslash is not available in the build
+                                ;; container.
+                                "--skip" "list_tools"
+                                "--skip" "accept_elicitation_for_prompt_rule"
+                                ;;; Test isolation bug: each test in
+                                ;;; state/src/runtime.rs calls
+                                ;;; unique_temp_dir() to get its own
+                                ;;; temporary directory (and thus its
+                                ;;; own SQLite database).  That function
+                                ;;; names directories using the current
+                                ;;; nanosecond timestamp, so when tests
+                                ;;; run in parallel several can receive
+                                ;;; the same name and open the same
+                                ;;; database.  The initial SQLite
+                                ;;; migration runs CREATE TABLE threads
+                                ;;; (without IF NOT EXISTS), so any init
+                                ;;; after the first panics with "table
+                                ;;; threads already exists".  Any of
+                                ;;; these tests
+                                ;;; can be the victim.
                                 "--skip" "init_removes_legacy_state_db_files"
                                 "--skip" "upsert_and_get_thread_memory"
                                 "--skip" "get_last_n_thread_memories_for_cwd_matches_exactly"
                                 "--skip" "upsert_thread_memory_errors_for_unknown_thread"
                                 "--skip" "get_last_n_thread_memories_for_cwd_zero_returns_empty"
                                 "--skip" "get_last_n_thread_memories_for_cwd_does_not_prefix_match"
-                                "--skip" "deleting_thread_cascades_thread_memory"
-                                ;;; END SQLite test isolation
-                                ;; The test spawns 'sh' after
-                                ;; env_clear() with an empty env map;
-                                ;; glibc execvp uses confstr(_CS_PATH)
-                                ;; ("/bin:/usr/bin") when PATH is
-                                ;; unset, but /bin/sh does not exist
-                                ;; in the build container.
-                                "--skip" "cancellation_expiration_keeps_process_alive_until_terminated"
-                                ;; Proxy baseline_policy returns 403
-                                ;; "not_allowed_local" for example.com;
-                                ;; test expects 200.
-                                "--skip" "managed_network_proxy_decider_survives_full_access_start"
-                                ;;; BEGIN bash_snapshot_script() uses
-                                ;;; "compgen -e" to list exports but
-                                ;;; bash-minimal lacks programmable
-                                ;;; completion; export section is empty.
-                                ;; stdout.contains("VALID_NAME") fails.
-                                "--skip" "bash_snapshot_filters_invalid_exports"
-                                ;; stdout.contains("MULTILINE_CERT") fails.
-                                "--skip" "bash_snapshot_preserves_multiline_exports"
-                                ;; snapshot.contains("PATH") fails.
-                                "--skip" "linux_bash_snapshot_includes_sections"
-                                ;;; END compgen
-                                ;; substitute* patches PAGER to store
-                                ;; path of cat; test expects bare "cat".
-                                "--skip" "unified_exec_env_injects_defaults"
-                                ;;; BEGIN V8 disabled (codex-code-mode
-                                ;;; default-features = false).
-                                "--skip" "suite::code_mode::"
-                                "--skip" "suite::js_repl::"
-                                "--skip" "suite::view_image::js_repl_"
-                                ;;; END V8 disabled
-                                ;;; BEGIN same compgen root cause:
-                                ;;; assert_posix_snapshot_sections
-                                ;;; asserts snapshot.contains("PATH").
-                                "--skip" "linux_shell_command_uses_shell_snapshot"
-                                "--skip" "linux_unified_exec_uses_shell_snapshot"
-                                "--skip" "shell_command_snapshot_still_intercepts_apply_patch"
-                                ;;; END compgen / shell snapshot
-                                ;;; BEGIN These sandbox tests set
-                                ;;; exclude_slash_tmp: true which makes
-                                ;;; bwrap exclude /tmp from its mount
-                                ;;; namespace.  Since Guix builds under
-                                ;;; /tmp, the codex-linux-sandbox binary
-                                ;;; becomes invisible to bwrap even though
-                                ;;; the test adds the helper dir as a
-                                ;;; filesystem carve-out -- the parent /tmp
-                                ;;; bind-mount is absent so the carve-out
-                                ;;; has nothing to carve out of.
-                                "--skip" "sandbox_reenables_writable_subpaths_under_unreadable_parents"
-                                "--skip" "managed_proxy_mode_routes_through_bridge_and_blocks_direct_egress"
-                                ;;; END exclude_slash_tmp
-                                ;; Expects 3 TerminalInteraction events
-                                ;; across timed poll windows; under CPU
-                                ;; contention events merge into 2.
-                                "--skip" "unified_exec_terminal_interaction_captures_delayed_output"
-                                ;;; BEGIN assert_parallel_duration
-                                ;;; requires < 1600 ms for parallel ops.
-                                ;; Two 300 ms test_sync_tool calls.
-                                "--skip" "read_file_tools_run_in_parallel"
-                                ;; Two "sleep 0.25" shell commands.
-                                "--skip" "shell_tools_run_in_parallel"
-                                ;; One test_sync_tool + one shell sleep.
-                                "--skip" "mixed_parallel_tools_run_in_parallel"
-                                ;;; END assert_parallel_duration
-                                ;; Asserts elapsed >= 4500 ms and
-                                ;; < 5800 ms for a 5 s timeout; under
-                                ;; contention elapsed drifts past 5800.
-                                "--skip" "remote_models_request_times_out_after_5s"
-                                ;; Queued inter-agent mail must be
-                                ;; injected between the reasoning/
-                                ;; commentary item and the gate release;
-                                ;; under contention the gate fires before
-                                ;; the mail is processed, so the snapshot
-                                ;; shows the stale function_call instead
-                                ;; of the expected mail message.
-                                "--skip" "queued_inter_agent_mail_triggers_follow_up_after_commentary_message_item"
-                                ;; Same root cause: snapshot mismatch at
-                                ;; pending_input.rs assert_two_responses_
-                                ;; input_snapshot; expects mail at position
-                                ;; 04 but gets function_call/shell instead.
-                                "--skip" "queued_inter_agent_mail_triggers_follow_up_after_reasoning_item"
-                                ;;; BEGIN DNS for hostnames like
-                                ;;; example.com fails in the build
-                                ;;; sandbox.  host_resolves_to_non_
-                                ;;; public_ip() in runtime.rs treats
-                                ;;; failed DNS as non-public and
-                                ;;; returns NotAllowedLocal, so tests
-                                ;;; expecting Allowed or Decider get
-                                ;;; Deny/BaselinePolicy instead.
-                                "--skip" "host_blocked_requires_allowlist_match"
-                                "--skip" "add_allowed_domain_removes_matching_deny_entry"
-                                "--skip" "host_blocked_subdomain_wildcards_exclude_apex"
-                                "--skip" "host_blocked_global_wildcard_allowlist_allows_public_hosts_except_denylist"
-                                "--skip" "evaluate_host_policy_emits_domain_event_for_decider_ask"
-                                "--skip" "evaluate_host_policy_emits_domain_event_for_decider_allow_override"
-                                "--skip" "http_connect_accept_blocks_in_limited_mode"
-                                "--skip" "http_connect_accept_allows_allowlisted_host_in_full_mode"
-                                "--skip" "mitm_policy_blocks_disallowed_method_and_records_telemetry"
-                                ;;; END DNS failure / NotAllowedLocal
-                                ;;; BEGIN Flaky: wiremock mock expects
-                                ;;; 1 POST to /codex/safety/arc but
-                                ;;; receives 0.  Passes in some builds,
-                                ;;; fails in others with identical code
-                                ;;; and env.  The identical custom_
-                                ;;; variant always passes; only the
-                                ;;; CODEX_APPS_MCP_SERVER_NAME variant
-                                ;;; flakes, suggesting a timing race
-                                ;;; in the async POST under contention.
-                                "--skip" "approve_mode_blocks_when_arc_returns_interrupt_for_model"
-                                "--skip" "approve_mode_blocks_when_arc_returns_interrupt_without_annotations"
-                                ;;; END ARC monitor flake
-                                ;;; BEGIN nss-certs sets SSL_CERT_FILE
-                                ;;; which makes build_reqwest_client load
-                                ;;; 171 CA certs via add_root_certificate.
-                                ;;; This changes the reqwest TLS backend
-                                ;;; configuration; the ARC safety POST to
-                                ;;; the localhost mock server never arrives
-                                ;;; (wiremock expects 1 request, gets 0).
-                                "--skip" "approve_mode_blocks_when_arc_returns_interrupt_for_model"
-                                "--skip" "approve_mode_blocks_when_arc_returns_interrupt_without_annotations"
-                                ;;; END nss-certs / ARC monitor
-                                ;; Upstream bug: JsonRpcConnection has
-                                ;; no websocket keepalive or read timeout.
-                                ;; When the exec-server is killed, the
-                                ;; client's reader task blocks on
-                                ;; websocket_reader.next() forever because
-                                ;; TCP doesn't detect the dead peer without
-                                ;; a write or keepalive probe.  Previously
-                                ;; masked because empty env made "sleep 10"
-                                ;; fail instantly; with PATH the process
-                                ;; lives long enough to hit the deadlock.
-                                "--skip" "remote_exec_process_reports_transport_disconnect"
-                                ;; 500 ms timeout on MCP list response
-                                ;; (mcp_server_status.rs timeout at
-                                ;; Duration::from_millis(500)).  With
-                                ;; nss-certs TLS now works, so the
-                                ;; startup plugin sync HTTP requests
-                                ;; (chatgpt.com, api.github.com) wait
-                                ;; for TCP timeout instead of failing
-                                ;; instantly at TLS, eating the budget.
-                                "--skip" "mcp_server_status_list_tools_and_auth_only_skips_slow_inventory_calls"
-                                ;;; BEGIN Stack overflow in 'current_thread'
-                                ;;; tokio runtime.  The sibling tests in
-                                ;;; tracing_tests.rs use the local helper
-                                ;;; run_current_thread_test_with_stack
-                                ;;; (4 MiB) but this one uses bare
-                                ;;; #[tokio::test] on the 2 MiB default
-                                ;;; test-thread stack, and TurnStart's
-                                ;;; future graph exceeds it.  With
-                                ;;; RUST_MIN_STACK raised the overflow is
-                                ;;; gone but the test then deterministically
-                                ;;; times out waiting for a span tagged
-                                ;;; codex.op = "user_input" on the remote
-                                ;;; trace that upstream never emits on that
-                                ;;; trace in our environment.
-                                "--skip" "turn_start_jsonrpc_span_parents_core_turn_spans"
-                                ;;; END tracing test stack/timeout
-                                ;;; BEGIN The upstream loader resolves the
-                                ;;; MCP OAuth credentials store mode by
-                                ;;; calling
-                                ;;; resolve_mcp_oauth_credentials_store_mode
-                                ;;; with env!("CARGO_PKG_VERSION") -- which
-                                ;;; in the released 0.124.0 tarball is
-                                ;;; "0.124.0".  These fixture tests
-                                ;;; construct the expected Config by
-                                ;;; passing the LOCAL_DEV_BUILD_VERSION
-                                ;;; constant ("0.0.0") to the same
-                                ;;; resolver, and the resolver only returns
-                                ;;; File for "0.0.0" -- Auto otherwise.
-                                ;;; Upstream CI builds from a checkout
-                                ;;; still carrying version = "0.0.0" so the
-                                ;;; tests pass there; they cannot pass
-                                ;;; against a released tag.
-                                "--skip" "test_precedence_fixture_with_gpt3_profile"
-                                "--skip" "test_precedence_fixture_with_gpt5_profile"
-                                "--skip" "test_precedence_fixture_with_o3_profile"
-                                "--skip" "test_precedence_fixture_with_zdr_profile"
-                                ;;; END LOCAL_DEV_BUILD_VERSION fixture mismatch
-                                ;;; BEGIN Verifies that Codex's user-shell
-                                ;;; spawn produces a child where
-                                ;;; CODEX_SANDBOX_NETWORK_DISABLED is unset
-                                ;;; (asserts stdout == "not-set").  We
-                                ;;; deliberately set that env var at the
-                                ;;; check phase to trigger upstream's
-                                ;;; skip_if_no_network! guards; the var then
-                                ;;; leaks into the spawned shell and the
-                                ;;; assertion fails.  The guix skip is a
-                                ;;; direct cost of the network-gate fix --
-                                ;;; trading one broken test for two that
-                                ;;; now skip cleanly.
-                                "--skip" "user_shell_command_does_not_set_network_sandbox_env_var"
-                                ;;; END CODEX_SANDBOX_NETWORK_DISABLED leak
-                                ;;; BEGIN The exec-server/tests/file_system
-                                ;;; integration tests invoke the real
-                                ;;; system bwrap, which tries to execvp the
-                                ;;; test binary at the cargo target path
-                                ;;; under the build dir.  Same root cause
-                                ;;; as the existing
-                                ;;; sandbox_reenables_writable_subpaths_under_unreadable_parents
-                                ;;; skip: guix builds live under /tmp but
-                                ;;; bwrap's mount namespace excludes /tmp,
-                                ;;; making the binary invisible inside the
-                                ;;; namespace.
-                                "--skip" "file_system_copy_preserves_symlink_source"
-                                "--skip" "file_system_copy_rejects_symlink_escape_destination"
-                                "--skip" "file_system_copy_rejects_symlink_escape_source"
-                                "--skip" "file_system_create_directory_rejects_symlink_escape"
-                                "--skip" "file_system_read_directory_rejects_symlink_escape"
-                                "--skip" "file_system_remove_rejects_symlink_escape"
-                                "--skip" "file_system_remove_removes_symlink_not_target"
-                                "--skip" "file_system_sandboxed_read_allows_readable_root"
-                                "--skip" "file_system_sandboxed_read_rejects_symlink_escape"
-                                "--skip" "file_system_sandboxed_read_rejects_symlink_parent_dotdot_escape"
-                                "--skip" "file_system_sandboxed_write_allows_additional_write_root"
-                                "--skip" "file_system_sandboxed_write_rejects_symlink_escape"
-                                "--skip" "file_system_sandboxed_write_rejects_unwritable_path"
-                                ;;; END bwrap-cant-see-/tmp file_system tests
-                                ;;; BEGIN Landlock is unavailable on Guix,
-                                ;;; so the sandbox cannot deny network
-                                ;;; syscalls.  These tests expect
-                                ;;; SandboxErr::Denied for the nc, ping,
-                                ;;; ssh, getent, and dev_tcp_redirection
-                                ;;; commands but those commands instead
-                                ;;; block on connect() until the test's 2s
-                                ;;; timeout fires (Timeout, exit 124).
-                                ;;; Same root cause as the Landlock skips
-                                ;;; at the top of this list; new test names
-                                ;;; in 0.124.
-                                "--skip" "sandbox_blocks_nc"
-                                "--skip" "sandbox_blocks_ping"
-                                "--skip" "sandbox_blocks_dev_tcp_redirection"
-                                "--skip" "sandbox_blocks_getent"
-                                "--skip" "sandbox_blocks_ssh"
-                                ;;; END Landlock network block
-                                ;;; BEGIN Requires github.com network access.
-                                ;;; With no "extraKnownMarketplaces" entry
-                                ;;; in settings.json,
-                                ;;; collect_marketplace_import_sources
-                                ;;; inserts a fallback entry for the
-                                ;;; "claude-plugins-official" marketplace
-                                ;;; pointing at the github shorthand
-                                ;;; "anthropics/claude-plugins-official".
-                                ;;; add_marketplace -> parse_marketplace_source
-                                ;;; expands that to a github.com/.git URL
-                                ;;; and clone_git_source runs 'git clone'.
-                                ;;; The Guix build sandbox has no network,
-                                ;;; so the clone fails and the marketplace
-                                ;;; lands in failed_marketplaces.  No mock
-                                ;;; cloner is injected via
-                                ;;; ExternalAgentConfigService::new_for_test,
-                                ;;; so there is no in-tree way to satisfy
-                                ;;; the test offline.
-                                "--skip" "import_plugins_infers_claude_official_marketplace_when_missing_from_settings"
-                                ;;; END github.com network access
-                                ;;; BEGIN Async race between the rollout
-                                ;;; writer task and a direct SQLite read.
-                                ;;; The test calls
-                                ;;; update_memory_settings_with_app_server,
-                                ;;; which routes through the in-memory
-                                ;;; thread path on the app-server's
-                                ;;; ThreadMemoryModeSet handler ->
-                                ;;; Session::set_thread_memory_mode ->
-                                ;;; persist_thread_memory_mode_update,
-                                ;;; which writes a RolloutItem::SessionMeta
-                                ;;; with the new mode to the rollout file
-                                ;;; via recorder.record_items + flush.  The
-                                ;;; rollout writer task then asynchronously
-                                ;;; calls sync_thread_state_after_write,
-                                ;;; which calls state_db::apply_rollout_items
-                                ;;; to mirror the SessionMeta into SQLite.
-                                ;;; flush() only awaits the rollout-file
-                                ;;; write, not the subsequent SQLite sync.
-                                ;;; The test opens a fresh StateRuntime and
-                                ;;; reads get_thread_memory_mode
-                                ;;; immediately, so it observes the creation
-                                ;;; default of "enabled" written by
-                                ;;; upsert_thread_with_creation_memory_mode
-                                ;;; instead of the new "disabled".  Upstream
-                                ;;; CI wins this race; we lose.
-                                "--skip" "update_memory_settings_updates_current_thread_memory_mode"
-                                ;;; END memory-mode rollout/sqlite race
-                                ;;; BEGIN The Stopwatch::new constructor in
-                                ;;; codex_shell_escalation anchors
-                                ;;; T0 = Instant::now() at construction;
-                                ;;; the spawned cancellation task fires at
-                                ;;; T0 + limit.  The test captures
-                                ;;; start = Instant::now() at T1 > T0 (after
-                                ;;; cancellation_token() returns) and
-                                ;;; asserts start.elapsed() >= limit,
-                                ;;; i.e. (T0 + limit) - T1 >= limit, which
-                                ;;; is always false by the offset T1 - T0.
-                                ;;; The test only passes when scheduler
-                                ;;; jitter on the sleep wakeup happens to
-                                ;;; exceed that offset.  Upstream wins the
-                                ;;; race; we don't always.
-                                "--skip" "cancellation_receiver_fires_after_limit"
-                                ;;; END Stopwatch construction/start offset race
-                                )
+                                "--skip" "deleting_thread_cascades_thread_memory")
       #:cargo-package-crates
       ''(;;; Tier 0: No internal deps.
-         "codex-ansi-escape"
          "codex-async-utils"
-         "codex-backend-openapi-models"
          "codex-client"
          "codex-execpolicy"
          "codex-file-search"
-         "codex-git-utils"
+         "codex-git"
          "codex-keyring-store"
-         "codex-process-hardening"
          "codex-utils-absolute-path"
          "codex-utils-cache"
          "codex-utils-cargo-bin"
-         "codex-utils-elapsed"
-         "codex-utils-fuzzy-match"
          "codex-utils-home-dir"
          "codex-utils-json-to-toml"
-         "codex-utils-path"
-         "codex-utils-plugins"
          "codex-utils-pty"
          "codex-utils-readiness"
-         "codex-utils-rustls-provider"
-         "codex-utils-sleep-inhibitor"
-         "codex-utils-stream-parser"
          "codex-utils-string"
-         "codex-utils-template"
-         ;;; Tier 1.
+         "codex-backend-openapi-models"
+         "codex-process-hardening"
+         "codex-ansi-escape"
+         ;;; Tier 1: Depends on tier 0.
          "codex-utils-image"
-         "codex-utils-output-truncation"
          "codex-apply-patch"
          "codex-protocol"
          "codex-windows-sandbox"
@@ -518,69 +226,35 @@
          "codex-secrets"
          "codex-execpolicy-legacy"
          "codex-debug-client"
-         "codex-analytics"
-         "codex-rollout"
-         "codex-rollout-trace"
-         "codex-terminal-detection"
-         "codex-utils-approval-presets"
-         "codex-utils-cli"
-         "codex-uds"
-         "codex-install-context"
-         "codex-device-key"
          ;;; Tier 2.
          "codex-app-server-protocol"
          "codex-rmcp-client"
          "codex-otel"
-         "codex-thread-store"
          "codex-state"
-         "codex-features"
-         "codex-model-provider"
-         "codex-config"
-         "codex-agent-identity"
-         "codex-aws-auth"
-         "codex-hooks"
-         "codex-code-mode"
-         "codex-feedback"
-         "codex-skills"
-         "codex-test-binary-support"
          "codex-core"
-         "codex-core-plugins"
-         "codex-utils-sandbox-summary"
          "codex-linux-sandbox"
-         "codex-sandboxing"
-         "codex-connectors"
-         "codex-core-skills"
+         "codex-feedback"
          ;;; Tier 3.
          "codex-arg0"
          "codex-lmstudio"
          "codex-login"
          "codex-ollama"
-         "codex-utils-oss"
+         "codex-common"
          "codex-mcp-server"
          "codex-backend-client"
          "codex-responses-api-proxy"
-         "codex-shell-command"
-         "codex-shell-escalation"
-         "codex-plugin"
-         "codex-model-provider-info"
-         "codex-models-manager"
          ;;; Tier 4.
          "codex-cloud-requirements"
          "codex-exec"
          "codex-exec-server"
-         "codex-network-proxy"
          "codex-stdio-to-uds"
+         "codex-network-proxy"
          "codex-chatgpt"
          "codex-cloud-tasks-client"
-         "codex-cloud-tasks-mock-client"
-         "codex-tools"
-         "codex-mcp"
-         "codex-collaboration-mode-templates"
          ;;; Tier 5.
          "codex-app-server"
          "codex-app-server-test-client"
          "codex-tui"
-         "codex-response-debug-context"
          ;;; Tier 6.
          "codex-cloud-tasks"
          ;; The main executable.
@@ -596,7 +270,7 @@
               ;; Update them to match the actual package version.
               (let ((snap-files (find-files "." "\\.snap$")))
                 (substitute* snap-files
-                  (("\\(v0\\.0\\.0\\)   ") "(v0.124.0) ")))))
+                  (("\\(v0\\.0\\.0\\) ") "(v0.98.0)")))))
           (add-after 'chdir-to-workspace 'patch-git-deps-to-vendor
             (lambda _
               ;; Replace git dependencies with version references so cargo
@@ -605,57 +279,23 @@
                 (("nucleo = \\{ git = [^}]+\\}")
                  "nucleo = \"0.5.0\"")
                 (("runfiles = \\{ git = [^}]+\\}")
-                 "runfiles = \"0.1.0\""))
-              ;; Remove workspace members that have unbuildable deps
-              ;; (v8-poc requires V8).  code-mode stays a workspace member
-              ;; so its codex-protocol resolves to the same local copy as
-              ;; the rest of the build; disabling its default features
-              ;; (below) avoids pulling in V8.
-              (substitute* "Cargo.toml"
-                (("\"v8-poc\",") ""))
-              ;; Disable V8 runtime in codex-code-mode by turning off
-              ;; default features.  Keep path= so code-mode is resolved
-              ;; from the local source tree and shares codex-protocol
-              ;; (and other workspace crates) with the rest of the build;
-              ;; resolving it from the vendor instead introduces a
-              ;; duplicate codex-protocol and causes E0308 type
-              ;; mismatches in codex-tools.
-              (substitute* "Cargo.toml"
-                (("codex-code-mode = \\{ path = \"code-mode\" \\}")
-                 "codex-code-mode = { path = \"code-mode\", default-features = false }"))
-              ;; cargo build at workspace root ignores per-dep
-              ;; default-features=false and builds code-mode with its
-              ;; own default features, which include v8-runtime and
-              ;; would pull in V8.  Make the default feature empty.
-              (substitute* "code-mode/Cargo.toml"
-                (("^default = \\[\"v8-runtime\"\\]") "default = []"))))
-          (add-after 'patch-git-deps-to-vendor 'add-version-to-workspace-deps
+                 "runfiles = \"0.1.0\""))))
+          (add-after 'chdir-to-workspace 'add-version-to-workspace-deps
             (lambda _
               ;; cargo package requires all dependencies to have versions.
-              ;; Add version = "0.124.0" to internal path dependencies.
+              ;; cargo package requires all dependencies to have versions.
+              ;; Add version = "0.98.0" to internal path dependencies.
               (let ((cargo-files (find-files "." "^Cargo\\.toml$")))
                 (substitute* cargo-files
                   ;; Handle inline deps: name = { path = "..." }
                   (("(codex-[a-z0-9-]+) = \\{ path = " all name)
-                   (string-append name " = { version = \"0.124.0\", path = "))
+                   (string-append name " = { version = \"0.98.0\", path = "))
                   ;; Handle inline deps with package: name = { package = "...", path = "..." }
                   (("(codex-[a-z0-9-]+) = \\{ package = " all name)
-                   (string-append name " = { version = \"0.124.0\", package = "))
+                   (string-append name " = { version = \"0.98.0\", package = "))
                   ;; Handle section deps: [dependencies.X] with path = "..."
                   (("^(path = \"\\.\\./[^\"]*\")" all path-line)
-                   (string-append path-line "\nversion = \"0.124.0\""))))))
-          (add-after 'chdir-to-workspace 'use-gnu-store-in-sandbox
-            (lambda _
-              ;; LINUX_PLATFORM_DEFAULT_READ_ROOTS in linux-sandbox/src/
-              ;; bwrap.rs is the read-only baseline that codex's bwrap
-              ;; sandbox bind-mounts so commands can read /usr/bin/ls,
-              ;; libc, etc.  Upstream lists "/nix/store" for NixOS;
-              ;; Guix's equivalent is "/gnu/store".  Without this swap,
-              ;; the codex sandbox cannot locate any binaries on a Guix
-              ;; system because every "system" path resolves into
-              ;; /gnu/store/<hash>-pkg/bin/...
-              (substitute* "linux-sandbox/src/bwrap.rs"
-                (("\"/nix/store\"") "\"/gnu/store\""))))
+                   (string-append path-line "\nversion = \"0.98.0\""))))))
           (add-after 'chdir-to-workspace 'patch-hardcoded-paths
             (lambda* (#:key inputs #:allow-other-keys)
               (let ((bash-bin (string-append
@@ -685,14 +325,6 @@
                    (string-append "\"" bash-bin "/bash "))
                   (("\"/bin/sh ")
                    (string-append "\"" bash-bin "/sh "))
-                  ;; Single-quoted paths in test assertion strings,
-                  ;; e.g. "exec '/bin/bash' -c ...".  Must match the
-                  ;; double-quoted substitutions above so both sides
-                  ;; of assert_eq!/contains use the store path.
-                  (("'/bin/bash'")
-                   (string-append "'" bash-bin "/bash'"))
-                  (("'/bin/sh'")
-                   (string-append "'" bash-bin "/sh'"))
                   ;; coreutils.
                   (("\"/bin/(cat|cp|date|echo|head|ls|rm|sleep|true|touch)\"" all cmd)
                    (string-append "\"" coreutils-bin "/" cmd "\""))
@@ -707,150 +339,42 @@
                    (string-append "\"" git-bin "/git\""))
                   (("\"/usr/bin/sed\"")
                    (string-append "\"" sed-bin "/sed\"")))
-                ;; Bare Command::new("git") and Command::new("ls")
-                ;; in codex source files that exec internally.
-                (substitute* (find-files "git-utils" "\\.rs$")
-                  (("Command::new\\(\"git\"\\)")
-                   (string-append "Command::new(\"" git-bin "/git\")")))
-                (substitute* "tui/src/get_git_diff.rs"
-                  (("Command::new\\(\"git\"\\)")
-                   (string-append "Command::new(\"" git-bin "/git\")")))
-                (substitute* "core/src/turn_diff_tracker.rs"
-                  (("Command::new\\(\"git\"\\)")
-                   (string-append "Command::new(\"" git-bin "/git\")")))
-                (substitute* "cloud-tasks/src/env_detect.rs"
-                  (("Command::new\\(\"git\"\\)")
-                   (string-append "Command::new(\"" git-bin "/git\")")))
-                (substitute* "core/src/plugins/startup_sync.rs"
-                  (("\"git\",")
-                   (string-append "\"" git-bin "/git\",")))
-                (substitute* "file-search/src/lib.rs"
-                  (("Command::new\\(\"ls\"\\)")
-                   (string-append "Command::new(\"" coreutils-bin "/ls\")")))
-                ;; Neutralize pager with absolute path to cat.
-                (substitute* "core/src/unified_exec/process_manager.rs"
-                  (("\"PAGER\", \"cat\"")
-                   (string-append "\"PAGER\", \"" coreutils-bin "/cat\""))
-                  (("\"GIT_PAGER\", \"cat\"")
-                   (string-append "\"GIT_PAGER\", \"" coreutils-bin "/cat\""))
-                  (("\"GH_PAGER\", \"cat\"")
-                   (string-append "\"GH_PAGER\", \"" coreutils-bin "/cat\"")))
-                ;; Bare /bin/sleep inside a format! string
-                ;; (no surrounding double quotes, so the main
-                ;; pattern does not match).
-                (substitute*
-                  "shell-escalation/src/unix/escalate_server.rs"
-                  (("/bin/sleep")
-                   (string-append coreutils-bin "/sleep")))
                 ;; @SHELL@ placeholder from test-shebangs patch
                 (substitute*
                   (list "rmcp-client/src/program_resolver.rs"
                         "tui/src/external_editor.rs")
                   (("@SHELL@")
                    (string-append bash-bin "/sh")))
-                ;; Shebangs inside raw string literals (r#"..."#)
-                ;; that are written to scripts at runtime.  The
-                ;; main "/bin/sh" patterns only match double-quoted
-                ;; occurrences; these shebangs have no surrounding
-                ;; double quotes.
+                ;; shebang in test-only file
                 (substitute*
-                  (list "core/src/plugins/startup_sync_tests.rs"
-                        "core/src/tools/runtimes/shell/unix_escalation_tests.rs"
-                        "core/tests/suite/client.rs"
-                        "core/tests/suite/js_repl.rs"
-                        "core/tests/suite/skill_approval.rs"
-                        "core/tests/suite/user_notification.rs"
-                        "exec-server/tests/file_system.rs"
-                        "login/src/auth/auth_tests.rs"
-                        "models-manager/src/manager_tests.rs"
-                        "sandboxing/src/bwrap_tests.rs")
+                  "core/tests/suite/user_notification.rs"
                   (("#!/bin/bash")
-                   (string-append "#!" bash-bin "/bash"))
-                  (("#!/bin/sh")
-                   (string-append "#!" bash-bin "/sh")))
-                ;; Test helpers pass env: Default::default() to the
-                ;; spawn code which calls env_clear(), leaving
-                ;; processes with no PATH.  Inject the build-time
-                ;; PATH so tests find coreutils, bash, etc.
-                (substitute* (find-files "." "\\.rs$")
-                  (("env: Default::default\\(\\)")
-                   (string-append
-                    "env: std::env::var(\"PATH\")"
-                    ".into_iter()"
-                    ".map(|p| (\"PATH\".to_string(), p))"
-                    ".collect()")))
-                ;; Test-only absolute path; bare name works via PATH.
-                (substitute* "exec-server/tests/exec_process.rs"
-                  (("\"/usr/bin/python3\"")
-                   "\"python3\""))
-                ;; Same empty-env issue but in JSON literals
-                ;; (serde_json::json! macro).
-                (substitute* "exec-server/tests/process.rs"
-                  (("\"env\": \\{\\}")
-                   (string-append
-                    "\"env\": {\"PATH\": \""
-                    (getenv "PATH")
-                    "\"}"))))))
-          (add-before 'build 'set-bubblewrap-source
-            (lambda* (#:key inputs #:allow-other-keys)
-              (setenv "CODEX_BWRAP_SOURCE_DIR"
-                      (string-append
-                       (assoc-ref inputs "bubblewrap-source")
-                       "/"))))
-          (add-before 'build 'create-node-version-file
-            (lambda _
-              (call-with-output-file "guix-vendor/node-version.txt"
-                (lambda (port)
-                  (display "22.22.0" port)))))
+                   (string-append "#!" bash-bin "/bash"))))))
           (add-before 'check 'set-home
             (lambda _
-              ;; HOME must not be a prefix of /tmp, otherwise
-              ;; the TUI's path shortener replaces /tmp/... with
-              ;; ~/... and 30 snapshot tests fail.
-              (setenv "HOME" "/tmp/guix-home")
-              (mkdir-p "/tmp/guix-home")
-              (setenv "USER" "nixbld")
-              ;; Default libtest thread stack is 2 MiB, which is not
-              ;; enough for tokio current_thread tests that drive
-              ;; codex-core's full turn pipeline.  Upstream gates such
-              ;; tests through run_current_thread_test_with_stack (4 MiB)
-              ;; in app-server/src/message_processor/tracing_tests.rs;
-              ;; raise the global default so future additions that
-              ;; forget the wrapper still pass.
-              (setenv "RUST_MIN_STACK" "8388608")
-              ;; Disable network access.
-              (setenv "CODEX_SANDBOX_NETWORK_DISABLED" "1"))))))
-    (native-inputs `(("bubblewrap" ,bubblewrap) ;tests need bwrap on PATH
-                     ("clang" ,clang)
-                     ("cmake-minimal" ,cmake-minimal)
-                     ("libunwind" ,libunwind)
-                     ("lsof" ,lsof)            ;app-server tests
-                     ("nss-certs-for-test" ,nss-certs-for-test) ;OTLP gRPC TLS
-                     ("perl" ,perl)
-                     ("procps" ,procps)         ;tests use ps
-                     ("python-minimal" ,python-minimal)
-                     ("pkg-config" ,pkg-config)
-                     ("bubblewrap-source" ,(package-source bubblewrap))))
+              (setenv "HOME" "/tmp")
+              (setenv "USER" "nixbld"))))))
+    (native-inputs (list clang              ;bindgen uses libclang to parse BoringSSL's C headers
+                         cmake-minimal    ;BoringSSL is compiled from C source
+                         libunwind        ;BoringSSL tests verify stack unwinding in assembly
+                         perl python-minimal ;for tests
+                         pkg-config))
     (inputs (cons* bash-minimal coreutils git-minimal sed
-                   libcap oniguruma openssl sqlite zlib `(,zstd "lib")
+                   openssl sqlite `(,zstd "lib")
                    (cargo-inputs 'codex)))
-    (properties '((timeout . 108000) ; 30  hours
-                  (max-silent-time . 54000))) ; 15 hours
     (home-page "https://github.com/openai/codex")
     (synopsis "AI-assisted coding CLI and TUI")
     (description
      "Codex is an AI-powered coding assistant that runs in the terminal.
 It provides an interactive TUI for conversations with AI models, with
 support for shell command execution, file editing, and code generation.
-Configure providers via @file{~/.codex/config.toml}.
-
-codex-code-mode's V8 Javascript executor is disabled.")
+Configure providers via @file{~/.codex/config.toml}.")
     (license license:asl2.0)))
 
 (define-public codex-acp
   (package
     (name "codex-acp")
-    (version "0.11.1")
+    (version "0.9.2")
     (source
      (origin
        (method git-fetch)
@@ -859,8 +383,9 @@ codex-code-mode's V8 Javascript executor is disabled.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1rlgkbvrbdl5jhf49sjn2mifn2rq6z0vwf0gard23y1bz6sr3wmr"))
-       (patches (search-patches "codex-acp-0.11.1-remove-patch-sections.patch"))))
+        (base32 "190sq6s6jfz8dkj1y8305r7x6ln86qqr2j1bnfjci7f1x2wyzmsj"))
+       (patches (search-patches "codex-acp-0.9.2-remove-patch-sections.patch"
+                                "codex-acp-0.9.2-replace-result-flatten.patch"))))
     (build-system cargo-build-system)
     (arguments
      (list
@@ -868,43 +393,13 @@ codex-code-mode's V8 Javascript executor is disabled.")
       #:phases
       #~(modify-phases %standard-phases
           (add-after 'unpack 'patch-codex-deps
-            (lambda* (#:key inputs #:allow-other-keys)
+            (lambda _
               ;; Rewrite git dependencies to use vendored sources from rust-codex
               (substitute* "Cargo.toml"
-                (("git = \"https://github.com/openai/codex\", tag = \"rust-v0.117.0\"")
-                 "version = \"0.117.0\""))
-              ;; Disable V8 runtime in codex-code-mode (transitive dep).
-              (let ((port (open-file "Cargo.toml" "a")))
-                (display "
-[dependencies.codex-code-mode]
-version = \"0.117.0\"
-default-features = false
-" port)
-                (close-port port))
-              ;; Point codex-linux-sandbox at system bubblewrap source.
-              (setenv "CODEX_BWRAP_SOURCE_DIR"
-                      (string-append
-                       (assoc-ref inputs "bubblewrap-source")
-                       "/"))))
-          (add-before 'check 'set-home
-            (lambda _
-              (setenv "HOME" "/tmp")
-              (setenv "USER" "nixbld")))
-          (add-before 'build 'create-node-version-file
-            (lambda _
-              ;; codex-core's js_repl uses include_str! to read
-              ;; node-version.txt four directories up from its source;
-              ;; create it where the vendored crate expects it.
-              (call-with-output-file "guix-vendor/node-version.txt"
-                (lambda (port)
-                  (display "22.22.0" port))))))))
-    (native-inputs
-     `(("cmake-minimal" ,cmake-minimal)
-       ("clang" ,clang)
-       ("pkg-config" ,pkg-config)
-       ("bubblewrap-source" ,(package-source bubblewrap))))
-    (inputs (cons* libcap openssl sqlite zlib `(,zstd "lib")
-                   (cargo-inputs 'codex-acp)))
+                (("git = \"https://github.com/zed-industries/codex\", branch = \"acp\"")
+                 "version = \"0.0.0\"")))))))
+    (native-inputs (list pkg-config))
+    (inputs (cons* openssl sqlite `(,zstd "lib") (cargo-inputs 'codex-acp)))
     (home-page "https://github.com/zed-industries/codex-acp")
     (synopsis "ACP-compatible agent bridging Zed Codex with ACP clients")
     (description

gnu/packages/compiler-tools.scm

@@ -1,114 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2021 Foo Chuan Wei <chuanwei.foo@hotmail.com>
-;;; Copyright © 2022 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2022 Tobias Geerinckx-Rice <me@tobias.gr>
-;;; Copyright © 2024-2025 Efraim Flashner <efraim@flashner.co.il>
-;;; Copyright © 2025 Anderson Torres <anderson.torres.8519@gmail.com>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
-
-(define-module (gnu packages compiler-tools)
-  #:use-module (gnu packages autotools)
-  #:use-module (gnu packages gawk)
-  #:use-module (guix build-system gnu)
-  #:use-module (guix build-system trivial)
-  #:use-module (guix download)
-  #:use-module (guix gexp)
-  #:use-module (guix git-download)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix packages))
-
-(define-public byacc
-  (package
-    (name "byacc")
-    (version "20240109")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append
-             "https://invisible-mirror.net/archives/byacc/byacc-"
-             version ".tgz"))
-       (sha256
-        (base32
-         "0il4w1vwbglayakywyghiqhcjpg1yvv5ww2p8ylz32bi05wpg2gj"))
-       (snippet
-        #~(begin
-            ;; Remove machine-generated files
-            (for-each delete-file
-                      (list "configure"
-                            "btyaccpar.c"
-                            "yaccpar.c"))))))
-    (build-system gnu-build-system)
-    (native-inputs
-     (list autoconf
-           automake
-           gawk))
-    (home-page "https://invisible-island.net/byacc/byacc.html")
-    (synopsis "Berkeley Yacc LALR parser generator")
-    (description
-     "Berkeley Yacc is an LALR(1) parser generator.  Yacc reads the grammar
-specification from a file and generates an LALR(1) parser for it.  The parsers
-consist of a set of LALR(1) parsing tables and a driver routine written in the
-C programming language.")
-    (license license:public-domain)))
-
-(define-public oyacc
-  (package
-    (name "oyacc")
-    (version "6.6")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/ibara/yacc")
-              (commit (string-append name "-" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1a2nyg2nnh1las40klnp037sapaaph86kjx258cpqcwnk4cv3rnx"))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:test-target "test"
-      #:make-flags
-      #~(list (string-append "BINDIR=" #$output "/bin")
-              (string-append "MANDIR=" #$output "/share/man/man1"))))
-    (home-page "https://github.com/ibara/yacc")
-    (synopsis "Portable YACC from OpenBSD")
-    (description
-     "@command{oyacc} is a portable version of the OpenBSD's
-@acronym{yacc, Yet Another Compiler Compiler} program, with no dependencies
-besides libc.")
-    (license license:bsd-2)))
-
-(define-public oyacc-as-yacc-wrapper
-  (package/inherit oyacc
-    (name "oyacc-as-yacc-wrapper")
-    (build-system trivial-build-system)
-    (arguments
-     (list
-      #:builder
-      (with-imported-modules '((guix build utils))
-        #~(begin
-            (use-modules (guix build utils))
-            (let ((bindir (string-append #$output "/bin"))
-                  (oyacc (string-append #$(this-package-input "oyacc")
-                                        "/bin/oyacc")))
-              (mkdir-p bindir)
-              (symlink oyacc (string-append bindir "/yacc")))))))
-    (inputs (list oyacc))
-    (description
-     "This package provides the @command{yacc} command, implemented as a
-symbolic link to the @command{oyacc} command from the same-named package.")))

gnu/packages/compression.scm

@@ -34,7 +34,7 @@
 ;;; Copyright © 2021 Vincent Legoll <vincent.legoll@gmail.com>
 ;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com>
 ;;; Copyright © 2021, 2024-2025 Maxim Cournoyer <maxim@guixotic.coop>
-;;; Copyright © 2021, 2026 Ahmad Jarara <ajarara@fastmail.com>
+;;; Copyright © 2021 Ahmad Jarara <git@ajarara.io>
 ;;; Copyright © 2022 Greg Hogan <code@greghogan.com>
 ;;; Copyright © 2022 Zhu Zihao <all_but_last@163.com>
 ;;; Copyright © 2021 Foo Chuan Wei <chuanwei.foo@hotmail.com>
@@ -2375,9 +2375,7 @@ non-Windows systems without running the actual installer using wine.")
      (sha256
       (base32 "17k679glx05v23n8kxbg9vmbf89i2252g5xj6w3dkz19asmh1zd6"))))
    (build-system gnu-build-system)
-   (native-inputs
-    (cons* autoconf automake libtool
-           (maybe-nasm)))
+   (native-inputs (list autoconf automake libtool nasm))
    (home-page "https://github.com/intel/isa-l")
    (synopsis "Intelligent storage acceleration library")
    (description "ISA-L is a collection of optimized low-level functions
@@ -3005,13 +3003,17 @@ can append files to the end of such compressed archives.")
           "00ibddiy62kbs9wl52c35j0hbqanx6pi7lvzkpzmbsizkj8mhp1p"))))
     (build-system cmake-build-system)
     (arguments
-     (list
-      #:configure-flags
-      #~'("-DWITH_TESTS=ON"
-          "-DBUILD_SHARED_LIBS=ON")))
+     '(#:tests? #f
+       #:configure-flags
+       (let* ((out (assoc-ref %outputs "out"))
+              (lib (string-append out "/lib")))
+         (list
+          "-DCMAKE_BUILD_TYPE=Release"
+          "-DBUILD_SHARED_LIBS=ON"
+          "-DCBOR_CUSTOM_ALLOC=ON"
+          (string-append "-DCMAKE_INSTALL_LIBDIR=" lib)
+          (string-append "-DCMAKE_INSTALL_RPATH=" lib)))))
     (synopsis "The C library for parsing and generating CBOR")
-    (native-inputs
-     (list cmocka))
     (description
      "@acronym{CBOR, The Concise Binary Object Representation} is a data format
 whose design goals include the possibility of extremely small code size, fairly

gnu/packages/containers.scm

@@ -50,7 +50,6 @@
   #:use-module (gnu packages bash)
   #:use-module (gnu packages check)
   #:use-module (gnu packages compression)
-  #:use-module (gnu packages docker)
   #:use-module (gnu packages glib)
   #:use-module (gnu packages gcc)
   #:use-module (gnu packages gettext)
@@ -71,7 +70,6 @@
   #:use-module (gnu packages networking)
   #:use-module (gnu packages package-management)
   #:use-module (gnu packages pkg-config)
-  #:use-module (gnu packages prometheus)
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages python-build)
   #:use-module (gnu packages python-check)
@@ -123,365 +121,6 @@
      "This package provides a Go library to read and manipulate checkpoint
 archives as created by Podman, CRI-O and containerd.")
     (license license:asl2.0)))
-
-(define-public go-github-com-containerd-containerd-v2
-  (package
-    (name "go-github-com-containerd-containerd-v2")
-    (version "2.2.3")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/containerd/containerd")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0wxy5np689571s6lw77mx63nw75fx85w5svi0jplksmqzmjqp8wd"))
-       (snippet
-        #~(begin (use-modules (guix build utils))
-         (delete-file-recursively "vendor")
-            ;; Submodules with their own go.mod files and packaged separately:
-            ;;
-            ;; - github.com/containerd/containerd/api
-            (delete-file-recursively "api")))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:skip-build? #t
-      #:import-path "github.com/containerd/containerd/v2"
-      #:test-subdirs
-      #~(list "cmd/protoc-gen-go-fieldpath/..."
-              "core/containers/..."
-              "core/content/..."
-              "core/diff"
-              "core/diff/apply"
-              "core/events/..."
-              "core/images/..."
-              "core/introspection/..."
-              "core/leases/..."
-              "core/metrics/..."
-              "core/remotes/..."
-              "core/sandbox/..."
-              "core/streaming/..."
-              "core/transfer"
-              "core/transfer/archive/..."
-              "core/transfer/image/..."
-              "core/transfer/local/..."
-              "core/transfer/plugins/..."
-              "core/transfer/streaming/..."
-              "core/unpack/..."
-              "internal/cleanup/..."
-              "internal/erofsutils/..."
-              "internal/eventq/..."
-              "internal/failpoint/..."
-              "internal/fsverity/..."
-              "internal/kmutex/..."
-              "internal/lazyregexp/..."
-              "internal/pprof/..."
-              "internal/randutil/..."
-              "internal/registrar/..."
-              "internal/tomlext/..."
-              "internal/truncindex/..."
-              "internal/userns/..."
-              "internal/wintls/..."
-              "pkg/apparmor/..."
-              "pkg/archive/..."
-              "pkg/atomicfile/..."
-              "pkg/blockio/..."
-              "pkg/cap/..."
-              "pkg/cio..."
-              "pkg/deprecation/..."
-              "pkg/dialer/..."
-              "pkg/display/..."
-              "pkg/epoch/..."
-              "pkg/fifosync/..."
-              "pkg/filters/..."
-              "pkg/gc/..."
-              "pkg/httpdbg/..."
-
-              ;; TODO: Check why these submodule fail to build.
-              ;; "client/..."
-              ;; "cmd/containerd-shim-runc-v2/..."
-              ;; "cmd/containerd-stress/..."
-              ;; "cmd/containerd/..."
-              ;; "cmd/ctr/..."
-              ;; "cmd/gen-manpages/..."
-              ;; "contrib/..."
-              ;; "core/diff/proxy"
-              ;; "core/metadata/..."
-              ;; "core/mount/..."
-              ;; "core/runtime/..."
-              ;; "core/snapshots/..."
-              ;; "core/transfer/proxy/..."
-              ;; "core/transfer/registry/..."
-              ;; "integration/..."
-              ;; "internal/cri/..."
-              ;; "internal/nri/..."
-              ;; "pkg/cdi/..."
-              #;"plugins/...")
-      #:test-flags
-      #~(list "-skip" (string-join
-                      ;; panic: cannot statfs cgroup root [recovered]
-                      (list "TestValidateConfig"
-                            ;; io_test.go:40: failed to start binary process:
-                            ;; fork/exec /bin/echo: no such file or directory
-                            "TestNewBinaryIO"
-                            ;; expected success: got executable file not found in $PATH
-                            "TestExecutorWithArgs"
-                            "TestSetEnv"
-                            "TestStdIOPipes"
-                            ;; panic: cannot statfs cgroup root
-                            "TestContainerCapabilities"
-                            "TestContainerSpecTty"
-                            "TestContainerSpecReadonlyRootfs"
-                            "TestContainerSpecWithExtraMounts"
-                            "TestContainerAndSandboxPrivileged"
-                            "TestPrivilegedBindMount"
-                            "TestCgroupNamespace"
-                            "TestPidNamespace/node_namespace_mode"
-                            ;; failed to apply b: invalid argument
-                            "TestDiffTar/IgnoreSockets"
-                            "TestBinDirVerifyImage/max_verifiers_=_-1,_with_timeout"
-                            "TestContainerSpecDefaultPath"
-                            ;; Error: Not equal:
-                            ;;        expected: 1000
-                            ;;        actual  : 123
-                            "TestSetPositiveOomScoreAdjustment")
-                       "|"))))
-    (native-inputs
-     (list go-github-com-stretchr-testify))
-    (propagated-inputs
-     (list go-dario-cat-mergo
-           go-github-com-adalogics-go-fuzz-headers
-           go-github-com-checkpoint-restore-checkpointctl
-           go-github-com-checkpoint-restore-go-criu-v7
-           go-github-com-containerd-btrfs-v2
-           go-github-com-containerd-cgroups-v3
-           go-github-com-containerd-console
-           go-github-com-containerd-containerd-api
-           go-github-com-containerd-continuity
-           go-github-com-containerd-errdefs
-           go-github-com-containerd-errdefs-pkg
-           go-github-com-containerd-fifo
-           go-github-com-containerd-go-cni
-           go-github-com-containerd-go-runc
-           go-github-com-containerd-imgcrypt-v2
-           go-github-com-containerd-log
-           go-github-com-containerd-nri
-           go-github-com-containerd-otelttrpc
-           go-github-com-containerd-platforms
-           go-github-com-containerd-plugin
-           go-github-com-containerd-ttrpc
-           go-github-com-containerd-typeurl-v2
-           go-github-com-containerd-zfs-v2
-           go-github-com-containernetworking-cni
-           go-github-com-containernetworking-plugins
-           go-github-com-coreos-go-systemd-v22
-           go-github-com-davecgh-go-spew
-           go-github-com-distribution-reference
-           go-github-com-docker-go-events
-           go-github-com-docker-go-metrics
-           go-github-com-docker-go-units
-           go-github-com-emicklei-go-restful-v3
-           go-github-com-fsnotify-fsnotify
-           go-github-com-google-certtostore
-           go-github-com-google-go-cmp
-           go-github-com-google-uuid
-           go-github-com-grpc-ecosystem-go-grpc-middleware-providers-prometheus
-           go-github-com-intel-goresctrl
-           go-github-com-klauspost-compress
-           go-github-com-mdlayher-vsock
-           ;;go-github-com-microsoft-go-winio ;Windows only
-           ;;go-github-com-microsoft-hcsshim ;Windows only
-           go-github-com-moby-locker
-           go-github-com-moby-sys-mountinfo
-           go-github-com-moby-sys-sequential
-           go-github-com-moby-sys-signal
-           go-github-com-moby-sys-symlink
-           go-github-com-moby-sys-user
-           go-github-com-moby-sys-userns
-           go-github-com-opencontainers-go-digest
-           go-github-com-opencontainers-image-spec
-           go-github-com-opencontainers-runtime-spec
-           go-github-com-opencontainers-runtime-tools
-           go-github-com-opencontainers-selinux
-           go-github-com-pelletier-go-toml-v2
-           go-github-com-prometheus-client-golang
-           go-github-com-sirupsen-logrus
-           go-github-com-tchap-go-patricia-v2
-           go-github-com-urfave-cli-v2
-           go-github-com-vishvananda-netlink
-           go-github-com-vishvananda-netns
-           go-go-etcd-io-bbolt
-           go-go-opentelemetry-io-contrib-instrumentation-google-golang-org-grpc-otelgrpc
-           go-go-opentelemetry-io-contrib-instrumentation-net-http-otelhttp
-           go-go-opentelemetry-io-otel
-           go-go-opentelemetry-io-otel-exporters-otlp-otlptrace
-           go-go-opentelemetry-io-otel-exporters-otlp-otlptrace-otlptracegrpc
-           go-go-opentelemetry-io-otel-exporters-otlp-otlptrace-otlptracehttp
-           go-go-opentelemetry-io-otel-sdk
-           go-go-opentelemetry-io-otel-trace
-           go-go-uber-org-goleak
-           go-golang-org-x-mod
-           go-golang-org-x-sync
-           go-golang-org-x-sys
-           go-golang-org-x-time
-           go-google-golang-org-genproto-googleapis-rpc
-           go-google-golang-org-grpc
-           go-google-golang-org-protobuf
-           go-gopkg-in-inf-v0
-           go-k8s-io-apimachinery
-           go-k8s-io-client-go
-           go-k8s-io-cri-api
-           go-k8s-io-klog-v2
-           go-tags-cncf-io-container-device-interface))
-    (home-page "https://containerd.io/")
-    (synopsis "Container runtime support daemon")
-    (description
-     "Containerd is a container runtime with an emphasis on simplicity,
-robustness, and portability.  It is available as a daemon, which can manage
-the complete container lifecycle of its host system: image transfer and
-storage, container execution and supervision, low-level storage and network
-attachments, etc.")
-    (license license:asl2.0)))
-
-(define-public go-github-com-containers-gvisor-tap-vsock
-  (package
-    (name "go-github-com-containers-gvisor-tap-vsock")
-    (version "0.8.8")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/containers/gvisor-tap-vsock")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1xz710dmy58gngd0qizjw8g9nkraksqald8vzhwc5h36dqkc8nrf"))
-       (modules '((guix build utils)))
-       (snippet
-        #~(begin
-            (delete-file-recursively "vendor")
-            ;; Submodules with their own go.mod files and packaged separately:
-            ;;
-            ;; - github.com/containers/gvisor-tap-vsock/tools
-            (delete-file-recursively "tools")))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:skip-build? #t
-      #:import-path "github.com/containers/gvisor-tap-vsock"
-      #:unpack-path "github.com/containers/gvisor-tap-vsock"
-      #:build-flags
-      #~(list (string-append "-ldflags="
-                             "-X github.com/containers/gvisor-tap-vsock"
-                             "/pkg/types.gitVersion=" #$version))
-      #:test-flags
-      #~(list "-skip"
-              (string-join
-               ;; Received unexpected error:
-               ;; listen unix /tmp/guix-.../test.sock: bind: invalid argument
-               (list "TestNotificationSender_Success"
-                     ;; Requires network
-                     "TestSuite"
-                     "TestDNS")
-               "|"))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'prune-tests
-            (lambda* (#:key unpack-path #:allow-other-keys)
-              (with-directory-excursion (string-append "src/" unpack-path)
-                ;; Requires working DNS.
-                (substitute* "pkg/services/dns/dns_test.go"
-                  (("Should pass DNS requests to default system DNS.*" all)
-                   (string-append all "\n" "ginkgo.Skip(\"No network.\");"))
-                  (("\"redhat.com\",")
-                   "\"localhost\",")
-                  (("\"52.200.142.250\"")
-                   "\"127.0.0.1\""))))))))
-    (native-inputs
-     (list go-github-com-stretchr-testify
-           go-github-com-foxcpp-go-mockdns))
-    (propagated-inputs
-     (list go-github-com-apparentlymart-go-cidr
-           go-github-com-containers-winquit
-           go-github-com-coreos-stream-metadata-go
-           go-github-com-dustin-go-humanize
-           go-github-com-google-gopacket
-           go-github-com-inetaf-tcpproxy
-           go-github-com-insomniacslk-dhcp
-           ;; go-github-com-linuxkit-virtsock  ;Windows only
-           go-github-com-mdlayher-vsock
-           ;; go-github-com-microsoft-go-winio ;Windows only
-           go-github-com-miekg-dns
-           go-github-com-onsi-ginkgo
-           go-github-com-onsi-gomega
-           go-github-com-opencontainers-go-digest
-           go-github-com-sirupsen-logrus
-           go-github-com-songgao-packets
-           go-github-com-songgao-water
-           go-github-com-vishvananda-netlink
-           go-golang-org-x-crypto
-           go-golang-org-x-mod
-           go-golang-org-x-sync
-           go-golang-org-x-sys
-           go-gopkg-in-yaml-v3
-           go-gvisor-dev-gvisor))
-    (home-page "https://github.com/containers/gvisor-tap-vsock")
-    (synopsis "Network stack for virtualization based on gVisor")
-    (description "This package provides a replacement for @code{libslirp} and
-@code{VPNKit}, written in pure Go.  It is based on the network stack of gVisor
-and brings a configurable DNS server and dynamic port forwarding.
-
-It can be used with QEMU, Hyperkit, Hyper-V and User-Mode Linux.
-
-The binary is called @command{gvproxy}.")
-    (license license:asl2.0)))
-
-(define-public go-github-com-rootless-containers-rootlesskit-v3
-  (package
-    (name "go-github-com-rootless-containers-rootlesskit-v3")
-    (version "3.0.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/rootless-containers/rootlesskit")
-              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0giw1whjpm64h8f1iamgym246rr3wl01w7zgw4lygrj7dqk3clmb"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:skip-build? #t
-      #:import-path "github.com/rootless-containers/rootlesskit/v3"))
-    (propagated-inputs
-     (list go-github-com-containernetworking-plugins
-           go-github-com-containers-gvisor-tap-vsock
-           go-github-com-gofrs-flock
-           go-github-com-google-uuid
-           go-github-com-gorilla-mux
-           go-github-com-insomniacslk-dhcp
-           go-github-com-masterminds-semver-v3
-           go-github-com-moby-sys-mountinfo
-           go-github-com-moby-vpnkit
-           go-github-com-sirupsen-logrus
-           go-github-com-songgao-water
-           go-github-com-urfave-cli-v2
-           go-golang-org-x-sync
-           go-golang-org-x-sys
-           go-gotest-tools-v3))
-    (home-page "https://github.com/rootless-containers/rootlesskit")
-    (synopsis "Linux-native fakeroot using user namespaces in Golang")
-    (description
-     "@code{RootlessKit} is a Linux-native implementation of \"fake root\" using
-@url{http://man7.org/linux/man-pages/man7/user_namespaces.7.html,(code
-user_namespaces(7))}.  It is used to run containers engines as an
-unprivileged user, known as \"Rootless mode\".")
-    (license license:asl2.0)))
-
-
 
 ;;;
 ;;; Executables:
@@ -511,7 +150,7 @@ as created by Podman, CRI-O and containerd.")))
 (define-public crun
   (package
     (name "crun")
-    (version "1.27.1")
+    (version "1.25.1")
     (source
      (origin
        (method url-fetch)
@@ -521,7 +160,7 @@ as created by Podman, CRI-O and containerd.")))
              "/crun-" version ".tar.gz"))
        (sha256
         (base32
-         "1w782s95f3xvw3fb66l2ciqkqsg4bk7n9ph31jmvn669ap272ymy"))))
+         "02kksvnja234k8mpq5j7yms8npbpvh8iz3k03h21lwcqzqsb88rx"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -906,7 +545,7 @@ Layer-4 sockets.")
 (define-public cni-plugins
   (package
     (name "cni-plugins")
-    (version "1.9.1")
+    (version "1.9.0")
     (source
      (origin
        (method git-fetch)
@@ -915,7 +554,7 @@ Layer-4 sockets.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "12z6w2jk6xgfiwdxys7skpkxldz1cgaa7scgfcr90lsghay59s6w"))
+        (base32 "0l3jgbizq0yaxld07hsdbh6ix2w6i789101ddk0ldnsmr93jg6ni"))
        (snippet
         #~(begin (use-modules (guix build utils))
                  (delete-file-recursively "vendor")))))
@@ -956,33 +595,92 @@ configure network interfaces in Linux containers.")
     (license license:asl2.0)))
 
 (define-public gvisor-tap-vsock
-  (package/inherit go-github-com-containers-gvisor-tap-vsock
+  (package
     (name "gvisor-tap-vsock")
+    (version "0.8.8")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/containers/gvisor-tap-vsock")
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1xz710dmy58gngd0qizjw8g9nkraksqald8vzhwc5h36dqkc8nrf"))
+       (modules '((guix build utils)))
+       (snippet
+        #~(begin
+            (delete-file-recursively "vendor")
+            ;; Submodules with their own go.mod files and packaged separately:
+            ;;
+            ;; - github.com/containers/gvisor-tap-vsock/tools
+            (delete-file-recursively "tools")))))
+    (build-system go-build-system)
     (arguments
-     (substitute-keyword-arguments arguments
-       ((#:install-source? _ #t) #f)
-       ((#:skip-build? _ #t) #f)
-       ((#:tests? _ #t) #f)
-       ((#:phases _ '%standard-phases)
-        #~(modify-phases %standard-phases
-            ;; Build binary outputs are taken from project's Makefile.
-            (replace 'build
-              (lambda arguments
-                (for-each
-                 (lambda (cmd)
-                   (apply (assoc-ref %standard-phases 'build)
-                          `(,@arguments #:import-path ,cmd)))
-                 (list "github.com/containers/gvisor-tap-vsock/cmd/gvproxy"
-                       "github.com/containers/gvisor-tap-vsock/cmd/qemu-wrapper"
-                       "github.com/containers/gvisor-tap-vsock/cmd/vm"))))
-            (add-after 'install 'fix-bin-name
-              (lambda _
-                (rename-file (string-append #$output "/bin/vm")
-                             (string-append #$output "/bin/gvforwarder"))))))))
+     (list
+      #:install-source? #f
+      #:import-path "github.com/containers/gvisor-tap-vsock/cmd/gvproxy"
+      #:unpack-path "github.com/containers/gvisor-tap-vsock"
+      #:build-flags
+      #~(list (string-append "-ldflags="
+                             "-X github.com/containers/gvisor-tap-vsock"
+                             "/pkg/types.gitVersion=" #$version))
+      #:test-flags
+      ;; serve UDP error: *net.OpError read udp 127.0.0.1:5354: use of closed
+      ;; network connection
+      #~(list "-skip" "TestSuite")
+      #:test-subdirs
+      #~(list "../../...")       ;test the whole library
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'unpack 'prune-tests
+            (lambda* (#:key unpack-path #:allow-other-keys)
+              (with-directory-excursion (string-append "src/" unpack-path)
+                ;; Requires working DNS.
+                (substitute* "pkg/services/dns/dns_test.go"
+                  (("Should pass DNS requests to default system DNS.*" all)
+                   (string-append all "\n" "ginkgo.Skip(\"No network.\");"))
+                  (("\"redhat.com\",")
+                   "\"localhost\",")
+                  (("\"52.200.142.250\"")
+                   "\"127.0.0.1\""))))))))
     (native-inputs
-     (package-propagated-inputs go-github-com-containers-gvisor-tap-vsock))
-    (propagated-inputs '())
-    (inputs '())))
+     (list go-github-com-apparentlymart-go-cidr
+           go-github-com-containers-winquit
+           go-github-com-coreos-stream-metadata-go
+           go-github-com-dustin-go-humanize
+           go-github-com-foxcpp-go-mockdns
+           go-github-com-google-gopacket
+           go-github-com-inetaf-tcpproxy
+           go-github-com-insomniacslk-dhcp
+           ;; go-github-com-linuxkit-virtsock  ;Windows only
+           go-github-com-mdlayher-vsock
+           ;; go-github-com-microsoft-go-winio ;Windows only
+           go-github-com-miekg-dns
+           go-github-com-onsi-ginkgo
+           go-github-com-onsi-gomega
+           go-github-com-opencontainers-go-digest
+           go-github-com-sirupsen-logrus
+           go-github-com-songgao-packets
+           go-github-com-songgao-water
+           go-github-com-stretchr-testify
+           go-github-com-vishvananda-netlink
+           go-golang-org-x-crypto
+           go-golang-org-x-mod
+           go-golang-org-x-sync
+           go-golang-org-x-sys
+           go-gopkg-in-yaml-v3
+           go-gvisor-dev-gvisor))
+    (home-page "https://github.com/containers/gvisor-tap-vsock")
+    (synopsis "Network stack for virtualization based on gVisor")
+    (description "This package provides a replacement for @code{libslirp} and
+@code{VPNKit}, written in pure Go.  It is based on the network stack of gVisor
+and brings a configurable DNS server and dynamic port forwarding.
+
+It can be used with QEMU, Hyperkit, Hyper-V and User-Mode Linux.
+
+The binary is called @command{gvproxy}.")
+    (license license:asl2.0)))
 
 (define-public catatonit
   (package
@@ -1016,7 +714,7 @@ Its main purpose is to support the key usage by @code{docker-init}:
 (define-public podman
   (package
     (name "podman")
-    (version "5.8.2")
+    (version "5.8.1")
     (outputs '("out" "docker"))
     (properties
      `((output-synopsis "docker" "docker alias for podman")
@@ -1029,7 +727,7 @@ Its main purpose is to support the key usage by @code{docker-init}:
              (url "https://github.com/containers/podman")
              (commit (string-append "v" version))))
        (sha256
-        (base32 "12bmzbfyjsf0mwnam38cw9ib54wj1znh5b7lxzdyll9cvvkhqisr"))
+        (base32 "1wdsdc0nj4m1v8mn95dhavi87ad0adqmld70da59gvp2abff5f0f"))
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (arguments
@@ -1187,7 +885,7 @@ being rootless and not requiring any daemon to be running.")
 (define-public buildah
   (package
     (name "buildah")
-    (version "1.43.1")
+    (version "1.43.0")
     (source
      (origin
        (method git-fetch)
@@ -1195,7 +893,7 @@ being rootless and not requiring any daemon to be running.")
              (url "https://github.com/containers/buildah")
              (commit (string-append "v" version))))
        (sha256
-        (base32 "00x4ja5n49jmkmiv54mmkihks9pnjnna7s7py57in6pc9g85xj2y"))
+        (base32 "0pwdd0mxhxy530c2sbsz0rnnb1jyl41rvnqn9ywfgb6lz5f4ja2a"))
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (arguments

gnu/packages/coreboot.scm

@@ -1,226 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2018 Danny Milosavljevic <dannym@scratchpost.org>
-;;; Copyright © 2018 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2019 Tobias Geerinckx-Rice <me@tobias.gr>
-;;; Copyright © 2025 Cayetano Santos <csantosb@inventati.org>
-;;; Copyright © 2026 Denis 'GNUtoo' Carikli <GNUtoo@cyberdimension.org>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
-
-(define-module (gnu packages coreboot)
-  #:use-module (gnu packages bison)
-  #:use-module (gnu packages compression)
-  #:use-module (gnu packages flex)
-  #:use-module (gnu packages pciutils)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix build-system cargo)
-  #:use-module (guix build-system cmake)
-  #:use-module (guix build-system copy)
-  #:use-module (guix build-system gnu)
-  #:use-module (guix build-system go)
-  #:use-module (guix build-system meson)
-  #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
-  #:use-module (guix build-system qt)
-  #:use-module (guix download)
-  #:use-module (guix gexp)
-  #:use-module (guix git-download)
-  #:use-module (guix packages)
-  #:use-module (guix utils)
-  #:use-module (srfi srfi-26))
-
-(define %coreboot-version "26.03")
-
-(define %coreboot-origin
-  (origin
-    (method git-fetch)
-    (uri (git-reference
-           (url "https://review.coreboot.org/coreboot")
-           (commit %coreboot-version)))
-    (file-name (git-file-name "coreboot" %coreboot-version))
-    (sha256
-     (base32
-      "0436rr0vibh35phvkxrc939njvrmnfq9xw87y1b0nlllglvq07kk"))))
-
-(define-public bincfg
-  (package
-    (name "bincfg")
-    (version %coreboot-version)
-    (source %coreboot-origin)
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:tests? #f ; no test suite
-      #:make-flags
-      #~(list
-         (string-append "CC=" #$(cc-for-target)))
-      #:phases
-      #~(modify-phases %standard-phases
-          (delete 'configure) ; no configure script
-          (add-after 'unpack 'chdir
-            (lambda _
-              (chdir "util/bincfg")))
-          (add-after 'build 'build-binaries
-            (lambda* (#:key make-flags #:allow-other-keys)
-              (for-each
-               (lambda (target result)
-                 (apply invoke "make" (string-append "gen-" target) make-flags)
-                 (rename-file result
-                              (string-append target ".bin")))
-               (list
-                ;; generate GbE for X200
-                "gbe-ich9m"
-                ;; generate GbE for X220/x230
-                "gbe-82579LM"
-                ;; generate IFD for X200
-                "ifd-x200")
-               (list
-                "flashregion_3_gbe.bin"
-                "flashregion_3_gbe.bin"
-                "flashregion_0_fd.bin"))))
-          ;; The Makefile has no install target.
-          (replace 'install
-            (lambda _
-              (let ((bin (string-append #$output "/bin"))
-                    (lib (string-append #$output "/lib/bincfg"))
-                    (data (string-append #$output "/share/bincfg")))
-                ;; Install the program
-                (install-file "bincfg" bin)
-                ;; And its data
-                (for-each
-                 (lambda (path)
-                   (install-file path data))
-                 (append (find-files "." ".*\\.set")
-                         (find-files "." ".*\\.spec")))
-                ;; And the files generated with the data
-                (for-each
-                 (lambda (path)
-                   (install-file path lib))
-                 (find-files "." ".*\\.bin"))))))))
-    (native-inputs (list bison flex))
-    (home-page "https://coreboot.org")
-    (synopsis "Encoder/decoder for binary formats described in text files")
-    (description "
-The bincfg program comes with specifications files for the following binary
-formats:
-@itemize
-@item Various DDR3 and DDR4 SPD
-@item Configuration data for the Intel 82579LM Gigabit Ethernet PHY
-@item Configuration data for the Intel Gigabit Ethernet controller present in
-      the Intel ICH9-M chipset.
-@item Intel Firmware Descriptor data for the Lenovo ThinkPad X200
-@item Configuration data for the ITE IT8718F SuperIO
-@end itemize
-It also comes with example files generated by bincfg.")
-    (license license:gpl3+)))
-
-(define-public ifdtool
-  (package
-    (name "ifdtool")
-    (version %coreboot-version)
-    (source %coreboot-origin)
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:make-flags
-      #~(list (string-append "CC=" #$(cc-for-target))
-              "INSTALL=install"
-              (string-append "PREFIX=" #$output))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'chdir
-            (lambda _
-              (chdir "util/ifdtool")))
-          (delete 'configure))           ; no configure script
-      #:tests? #f))                    ; no test suite
-    (home-page "https://doc.coreboot.org/util/ifdtool/")
-    (synopsis "Intel Firmware Descriptor dumper")
-    (description "This package provides @command{ifdtool}, a program to
-dump Intel Firmware Descriptor data of an image file.")
-    (license license:gpl2)))
-
-(define-public intelmetool
-  (package
-    (name "intelmetool")
-    (version %coreboot-version)
-    (source %coreboot-origin)
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:tests? #f                       ;no test suite
-      #:make-flags
-      #~(list (string-append "CC=" #$(cc-for-target))
-              "INSTALL=install"
-              (string-append "PREFIX=" #$output))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'chdir
-            (lambda _
-              (chdir "util/intelmetool")))
-          (delete 'configure) ;no configure script
-          (delete 'check))))
-    (inputs (list pciutils zlib))
-    (home-page
-     "https://github.com/coreboot/coreboot/tree/main/util/intelmetool/")
-    (synopsis "Intel Management Engine tools")
-    (description "This package provides tools for working with Intel
-Management Engine (ME).  You need to @code{sudo rmmod mei_me} and
-@code{sudo rmmod mei} before using this tool.  Also pass
-@code{iomem=relaxed} to the Linux kernel command line.")
-    (license license:gpl2)
-
-    ;; This is obviously an Intel thing, plus it requires <cpuid.h>.
-    (supported-systems '("x86_64-linux" "i686-linux"))))
-
-(define-public nvramtool
-  (package
-    (name "nvramtool")
-    (version %coreboot-version)
-    (source %coreboot-origin)
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:tests? #f ; no test suite
-      #:make-flags
-      #~(list (string-append "CC=" #$(cc-for-target))
-              "INSTALL=install"
-              (string-append "PREFIX=" #$output))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'chdir
-            (lambda _
-              (chdir "util/nvramtool")))
-          (delete 'configure)))) ; no configure script
-    (home-page "https://coreboot.org")
-    (synopsis "Command line tool that can edit Coreboot settings")
-    (description "@command{nvramtool} can see and/or modify Coreboot settings
-like the serial port speed, log level, etc.  It requires Coreboot to be compiled
-with CONFIG_USE_OPTION_TABLE and some options require the iomem=relaxed kernel
-command line to work.  Features:
-@itemize
-@item If Coreboot was compiled without CONFIG_STATIC_OPTION_TABLE, it can change
-      its settings, which are applied after a reboot.
-@item It can modify Coreboot images  default settings with
-      @command{nvramtool -C coreboot.rom [...]}.
-@item It has various options related to the file format used to store these
-      settings.
-@item It can also read/write the CMOS memory where the Coreboot settings can be
-      located.
-@end itemize")
-    ;; Some files are "GPL-2.0-only or BSD-3-Clause", other are GPL-2.0-only
-    ;; and anyway there is. There is also a license declaration in
-    ;; cli/nvramtool.8 that applies to "This program" which uses the GPLv2.
-    (license license:gpl2)))

gnu/packages/cpp.scm

@@ -28,7 +28,7 @@
 ;;; Copyright © 2022-2024 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2022 muradm <mail@muradm.net>
 ;;; Copyright © 2022 Attila Lendvai <attila@lendvai.name>
-;;; Copyright © 2022, 2026 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2022 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2022-2025 David Elsing <david.elsing@posteo.net>
 ;;; Copyright © 2022-2024 Zheng Junjie <873216071@qq.com>
 ;;; Copyright © 2022-2024, 2026 Maxim Cournoyer <maxim@guixotic.coop>
@@ -44,7 +44,7 @@
 ;;; Copyright © 2024 Jakob Kirsch <jakob.kirsch@web.de>
 ;;; Copyright © 2025 Sharlatan Hellseher <sharlatanus@gmail.com>
 ;;; Copyright © 2025 Sergio Pastor Pérez <sergio.pastorperez@gmail.com>
-;;; Copyright © 2025, 2026 Ashish SHUKLA <ashish.is@lostca.se>
+;;; Copyright © 2025 Ashish SHUKLA <ashish.is@lostca.se>
 ;;; Copyright © 2025 Nicolas Graves <ngraves@ngraves.fr>
 ;;; Copyright © 2025 Romain Garbage <romain.garbage@inria.fr>
 ;;; Copyright © 2024, 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
@@ -52,7 +52,6 @@
 ;;; Copyright © 2025 Philippe Swartvagher <phil.swart@gmx.fr>
 ;;; Copyright © 2025 Murilo <murilo@disroot.org>
 ;;; Copyright © 2026 Justin Veilleux <terramorpha@cock.li>
-;;; Copyright © 2026 Daniel Littlewood <dan@danielittlewood.xyz>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -134,7 +133,6 @@
   #:use-module (gnu packages sdl)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages tex)
-  #:use-module (gnu packages texinfo)
   #:use-module (gnu packages web)
   #:use-module (gnu packages webkit)
   #:use-module (gnu packages xdisorg)
@@ -685,6 +683,38 @@ computer program to introspect and modify an object at runtime.  It is also
 the name of the library itself, which is written in C++.")
     (license license:expat)))
 
+(define-public rct
+  (let* ((commit "b3e6f41d9844ef64420e628e0c65ed98278a843a")
+         (revision "2"))
+    (package
+      (name "rct")
+      (version (git-version "0.0.0" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/Andersbakken/rct")
+                      (commit commit)))
+                (sha256
+                 (base32
+                  "1m2931jacka27ghnpgf1z1plkkr64z0pga4r4zdrfpp2d7xnrdvb"))
+                (patches (search-patches "rct-add-missing-headers.patch"))
+                (file-name (git-file-name name version))))
+      (build-system cmake-build-system)
+      (arguments
+       '(#:configure-flags
+         '("-DWITH_TESTS=ON"            ; To run the test suite
+           "-DRCT_RTTI_ENABLED=ON")))
+      (native-inputs
+       (list cppunit pkg-config))
+      (inputs
+       (list openssl zlib))
+      (home-page "https://github.com/Andersbakken/rct")
+      (synopsis "C++ library providing Qt-like APIs on top of the STL")
+      (description "Rct is a set of C++ tools that provide nicer (more Qt-like)
+ APIs on top of Standard Template Library (@dfn{STL}) classes.")
+      (license (list license:expat        ; cJSON
+                     license:bsd-4)))))   ; everything else (LICENSE.txt)
+
 (define-public plutovg
   (package
     (name "plutovg")
@@ -937,85 +967,6 @@ inspired by the @url{https://github.com/gruns/icecream, Python library} of the
 same name.")
     (license license:expat)))
 
-(define-public tinyformat
-  (package
-    (name "tinyformat")
-    (version "2.3.0")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/c42f/tinyformat")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "0j8bxrg7i4rn98iqpfh03krshgcbwh8hq8nm0p3sfdqpira3vi3y"))))
-    (build-system cmake-build-system)
-    (arguments
-     (list #:phases
-           #~(modify-phases %standard-phases
-               (replace 'install
-                 (lambda _
-                   (install-file "../source/tinyformat.h"
-                                 (string-append #$output "/include")))))))
-    (home-page "https://github.com/c42f/tinyformat")
-    (synopsis "Minimal, type-safe printf replacement library for C++")
-    (description "@code{tinyformat} is a type-safe @code{printf} replacement
-library in a single C++ header file.  Design goals include:
-
-@itemize
-@item Type-safety and extensibility for user defined types
-@item C99 @code{printf} compatibility, to the extent possible using
-@code{std::ostream}
-@item POSIX extension for positional arguments
-@item Simplicity and minimalism; a single header file to include and
-distribute with your projects
-@item Augment rather than replace the standard stream formatting mechanism
-@item C++98 support, with optional C++11 niceties
-@end itemize")
-    (license license:boost1.0)))
-
-(define-public span
-  (let ((commit "836dc6a0efd9849cb194e88e4aa2387436bb079b")
-        (revision "0"))
-    (package
-      (name "span")
-      (version (git-version "0.1.0" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                       (url "https://github.com/tcbrindle/span")
-                       (commit commit)))
-                (file-name (git-file-name name version))
-                (sha256
-                 (base32
-                  "1v3x1mj4if8jrr7cmrcbhv8n8ygla0liqb0dic6g6ji7px2pr6jf"))
-                (snippet
-                 #~(delete-file "test/catch.hpp"))))
-      (build-system cmake-build-system)
-      (arguments
-       (list #:phases
-             #~(modify-phases %standard-phases
-                 (add-after 'unpack 'patch-catch2
-                   (lambda _
-                     ;; Use catch2 from Guix.
-                     (substitute* (find-files "test" "\\.cpp$")
-                       (("#include \"catch.hpp\"")
-                        "#include <catch2/catch.hpp>"))))
-                 (replace 'install
-                   (lambda _
-                     (install-file "../source/include/tcb/span.hpp"
-                                   (string-append #$output "/include")))))))
-      (native-inputs
-       (list catch2))
-      (home-page "https://github.com/tcbrindle/span")
-      (synopsis "C++20's @code{std::span} shim for older compilers")
-      (description "This package provides a single-header implementation of
-C++20's @code{std::span}, conforming to the C++20 committee draft.  It is
-compatible with C++11, but will use newer language features if they are
-available.")
-      (license license:boost1.0))))
-
 (define-public google-highway
   (package
     (name "google-highway")
@@ -1752,38 +1703,6 @@ maintained anymore.")
 concurrent queue for C++11.")
     (license license:bsd-2)))
 
-(define-public ringbuffer
-  (package
-    (name "ringbuffer")
-    (version "0.9.0")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/JohannesLorenz/ringbuffer")
-                    (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1c57hj6zyvcjpcbwrq8c1hj5brk1bnh69ayd88ny1p0gx031sjpk"))))
-    (build-system cmake-build-system)
-    (arguments
-     (list #:configure-flags
-           #~(list "-DCMAKE_CXX_FLAGS=-Wno-error=array-bounds"
-                   (string-append "-DINSTALL_LIB_DIR=" #$output "/lib"))
-           #:phases
-           #~(modify-phases %standard-phases
-               (add-after 'install 'install-export-header
-                 (lambda _
-                   (install-file "src/lib/ringbuffer_export.h"
-                                 (string-append #$output
-                                                "/include/ringbuffer")))))))
-    (home-page "https://github.com/JohannesLorenz/ringbuffer")
-    (synopsis "Lock-free multi-reader ringbuffer")
-    (description
-     "@code{ringbuffer} is a library containing a ringbuffer.  It is lock-free
-(using atomics only), and allows multiple readers, but only one writer.")
-    (license license:gpl3+)))
-
 (define-public spscqueue
   (package
     (name "spscqueue")
@@ -3305,7 +3224,8 @@ pointers, containers, compiler building blocks, etc.")
     (native-inputs
      (list build))
     (inputs
-     (list libcutl xerces-c))
+     `(("libcutl" ,libcutl)
+       ("libxerces-c" ,xerces-c)))
     (synopsis "XSD Front-end")
     (description "@code{libxsd-frontend} is a compiler frontend for the W3C
 XML Schema definition language.  It includes a parser, semantic graph types
@@ -3472,7 +3392,7 @@ which can evaluate Jsonnet files and expressions.")))
 (define-public simdjson
   (package
     (name "simdjson")
-    (version "4.6.3")
+    (version "3.13.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -3481,7 +3401,7 @@ which can evaluate Jsonnet files and expressions.")))
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0729mxnc2wjb94gr4znwlzfmgw5w2v9kd8glvn3vnjhkdnd87zry"))))
+                "005yli56nrkvlyx9g9cq8dczk42r9a18l162i2s5k81lj3y7mcrp"))))
     (build-system cmake-build-system)
     (arguments
      '(#:tests? #f                      ; tests require downloading dependencies
@@ -3720,7 +3640,7 @@ std::wstring, etc).")
 (define-public fast-float
   (package
     (name "fast-float")
-    (version "8.2.5")
+    (version "8.0.2")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -3729,7 +3649,7 @@ std::wstring, etc).")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1l13nsl4sgq71m7aifrmmmfyl14vp48vqdh7pb50hxqq6f8bq2b5"))))
+                "19x1yklf641yrpad6lk4cq3jmird10d5ig8hicm3p9lxh92k78cl"))))
     (build-system cmake-build-system)
     (arguments
      (list
@@ -3740,10 +3660,12 @@ std::wstring, etc).")
           (add-after 'unpack 'patch-cmake-tests
             (lambda* (#:key inputs native-inputs #:allow-other-keys)
               (substitute* "tests/CMakeLists.txt"
-                (("FetchContent_MakeAvailable\\(supplemental_test_files.*")
+                (("FetchContent_GetProperties\\(supplemental_test_files.*")
+                 "")
+                (("if\\(NOT supplemental_test_files_POPULATED.*")
                  (string-append
                   "set(supplemental_test_files_BINARY_DIR "
-                  #$fast-float-test-files ")\n"))))))))
+                  #$fast-float-test-files ")\nif(0)\n"))))))))
     (native-inputs (list doctest fast-float-test-files))
     (home-page "https://github.com/fastfloat/fast_float")
     (synopsis "Floating point number parser for C++")
@@ -3780,39 +3702,6 @@ computing Fast Fourier transformations.  It supports multidimensional arrays,
 different floating point sizes and complex transformations.")
       (license license:bsd-3))))
 
-(define-public libbinio
-  ;; The latest tagged version does not support CMake build.  This commit has
-  ;; builds with CMake and has updated CMake version support.
-  (let ((commit "e88dad086265e179ab6aef7f479e19f3917c7a98")
-        (revision "0"))
-    (package
-      (name "libbinio")
-      (version (git-version "1.5" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                      (url "https://github.com/adplug/libbinio")
-                      (commit commit)))
-                (file-name (git-file-name name version))
-                (sha256
-                 (base32
-                  "0rb33jl6gpxb88zymzl996m43b7r6wyw4lq0ib3626kna3baqnha"))))
-      (native-inputs
-       (list autoconf automake libtool texinfo))
-      (build-system cmake-build-system)
-      (arguments
-       (list #:tests? #f ;no tests
-             #:configure-flags
-             #~(list "-DBUILD_SHARED_LIBS=ON")))
-      (home-page "http://adplug.github.io/libbinio/")
-      (synopsis "Binary I/O stream class library")
-      (description
-       "This binary I/O stream class library presents a platform-independent
-way to access binary data streams in C++.  The library is hardware independent
-in the form that it transparently converts between the different forms of
-machine-internal binary data representation.")
-      (license license:lgpl2.1+))))
-
 (define-public priocpp
   ;; Latest release is from 2022-08-14.
   (let ((commit "ea15402adcd0d9191dc29ca6f7e4dd0bff67b9b5")
@@ -4639,47 +4528,6 @@ meta data function.")
     ;; or the CECILL-C license:
     (license (list license:lgpl3 license:cecill-c))))
 
-(define-public tcbrindle-span
-  (let ((commit "836dc6a0efd9849cb194e88e4aa2387436bb079b")
-        (revision "0"))
-    (package
-      (name "tcbrindle-span")
-      (version (git-version "0" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-               (url "https://github.com/tcbrindle/span")
-               (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "1v3x1mj4if8jrr7cmrcbhv8n8ygla0liqb0dic6g6ji7px2pr6jf"))
-         (modules '((guix build utils)))
-         ;; Unbundle catch.
-         (snippet
-          '(with-directory-excursion "test"
-             (delete-file "catch.hpp")
-             (substitute* (find-files "." "\\.cpp$")
-               (("\"catch\\.hpp\"") "<catch.hpp>"))))))
-      (build-system cmake-build-system)
-      (native-inputs (list catch-framework))
-      (arguments
-       (list
-        #:phases
-        #~(modify-phases %standard-phases
-            (replace 'install
-              (lambda _
-                (mkdir-p (string-append #$output))
-                (copy-recursively "../source/include"
-                                  (string-append #$output "/include")))))))
-      (home-page "https://github.com/tcbrindle/span")
-      (synopsis "Implementation of C++20's @code{std::span} for older compilers")
-      (description
-       "This package provides a single-header implementation of C++20's
-@code{std::span}, conforming to the C++20 committee draft.  It is compatible
-with C++11, but will use newer language features if they are available.")
-    (license license:boost1.0))))
-
 (define-public tsl-hopscotch-map
   (package
     (name "tsl-hopscotch-map")

gnu/packages/cross-base.scm

@@ -135,10 +135,20 @@
                                         (search-patches
                                          "ath9k-htc-firmware-binutils.patch")))
                  ((target-mingw? target)
-                  (package-with-extra-patches binutils
-                                              (search-patches
-                                               "binutils-cross-windres.patch"
-                                               "binutils-mingw-w64-deterministic.patch")))
+                  (package-with-extra-patches
+                   (package-with-extra-configure-variable
+                    ;; mingw binutils does not work correctly when configured
+                    ;; with `--enable-compressed-debug-sections`. An error
+                    ;; like the following will occur whenever you try to link:
+                    ;;
+                    ;;   x86_64-w64-mingw32-ld: final link failed: bad value
+                    ;;
+                    ;; TODO: This seems like a deeper problem that warrants
+                    ;; deeper investigation.
+                    binutils "--enable-compressed-debug-sections" "no")
+                   (search-patches
+                    "binutils-cross-windres.patch"
+                    "binutils-mingw-w64-deterministic.patch")))
                  (else binutils))
            target)))
 

gnu/packages/crypto.scm

@@ -276,17 +276,18 @@ Ed448-Goldilocks and Curve448, using the Decaf encoding.")
 (define-public libsodium
   (package
     (name "libsodium")
-    (version "1.0.22")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/jedisct1/libsodium")
-              (commit (string-append version "-RELEASE"))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32
-         "05lqdn6nzldsia5mv5a9xfvc5k0kybh9snwv7qsb135gva4bpjwk"))))
+    (version "1.0.18")
+    (source (origin
+            (method url-fetch)
+            (uri (list (string-append
+                        "https://download.libsodium.org/libsodium/"
+                        "releases/libsodium-" version ".tar.gz")
+                       (string-append
+                        "https://download.libsodium.org/libsodium/"
+                        "releases/old/libsodium-" version ".tar.gz")))
+            (sha256
+             (base32
+              "1h9ncvj23qbbni958knzsli8dvybcswcjbx0qjjgi922nf848l3g"))))
     (build-system gnu-build-system)
     (synopsis "Portable NaCl-based crypto library")
     (description
@@ -1010,7 +1011,7 @@ SHA-1, SHA-2, and SHA-3, yet is at least as secure as SHA-3.")
 (define-public rhash
   (package
     (name "rhash")
-    (version "1.4.6")
+    (version "1.4.3")
     (source
      (origin
        (method url-fetch)
@@ -1019,7 +1020,7 @@ SHA-1, SHA-2, and SHA-3, yet is at least as secure as SHA-3.")
        (file-name (string-append "rhash-" version ".tar.gz"))
        (sha256
         (base32
-         "0ylkxhkj4nzmb0iampn2lv7v4yw59x7dl8mdcxqcx2mfxv7ijq4z"))))
+         "0glaghjvwh9ziiqf599v0fdr6jrgc7lcnriq0h7r41k3jrkglh0y"))))
     (build-system gnu-build-system)
     (arguments
      (list #:configure-flags

gnu/packages/databases.scm

@@ -69,9 +69,6 @@
 ;;; Copyright © 2025 Simen Endsjø <contact@simendsjo.me>
 ;;; Copyright © 2025 bdunahu <bdunahu@operationnull.com>
 ;;; Copyright © 2026 Spencer King <spencer.king@wustl.edu>
-;;; Copyright © 2026 Peter Polidoro <peter@polidoro.io>
-;;; Copyright © 2026 Josep Bigorra <jjbigorra@gmail.com>
-;;; Copyright © 2026 Daniel Littlewood <dan@danielittlewood.xyz>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -128,7 +125,6 @@
   #:use-module (gnu packages gperf)
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages guile)
-  #:use-module (gnu packages guile-xyz)
   #:use-module (gnu packages icu4c)
   #:use-module (gnu packages jemalloc)
   #:use-module (gnu packages language)
@@ -201,7 +197,6 @@
   #:use-module (guix build-system emacs)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system go)
-  #:use-module (guix build-system guile)
   #:use-module (guix build-system meson)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system pyproject)
@@ -1061,31 +1056,6 @@ auto-completion and syntax highlighting.")
 \"special\", or \"backslash commands\") on PostgreSQL.")
     (license license:bsd-3)))
 
-(define-public python-sqlite-anyio
-  (package
-    (name "python-sqlite-anyio")
-    (version "0.2.8")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/davidbrochart/sqlite-anyio")
-             (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "075fnrrwzn9xc2clkcsyfycjc870khcwnpdg4g726qwl44pfzy2a"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:build-backend "poetry.core.masonry.api")) ;XXX: python-uv-build is required
-    (propagated-inputs (list python-anyio python-typing-extensions))
-    (native-inputs (list python-poetry-core python-pytest))
-    (home-page "https://github.com/davidbrochart/sqlite-anyio")
-    (synopsis "Asynchronous client for SQLite using AnyIO")
-    (description "This package provides an asynchronous client for SQLite
-using @code{AnyIO}.")
-    (license license:expat)))
-
 (define-public python-sqlitedict
   (package
     (name "python-sqlitedict")
@@ -1191,70 +1161,73 @@ auto-completion and syntax highlighting.")
     (name "mysql")
     (version "5.7.33")
     (source (origin
-              (method url-fetch)
-              (uri (list (string-append
+             (method url-fetch)
+             (uri (list (string-append
                           "https://dev.mysql.com/get/Downloads/MySQL-"
                           (version-major+minor version) "/"
                           name "-" version ".tar.gz")
-                         (string-append
+                        (string-append
                           "https://downloads.mysql.com/archives/get/file/"
                           name "-" version ".tar.gz")))
-              (sha256
-               (base32
-                "1bb343mf7n0qg2qz497gxjsqprygrjz1q1pbz76hgqxnsy08sfxd"))))
+             (sha256
+              (base32
+               "1bb343mf7n0qg2qz497gxjsqprygrjz1q1pbz76hgqxnsy08sfxd"))))
     (build-system cmake-build-system)
     (arguments
-     (list
-      #:configure-flags
-      #~(list "-DBUILD_CONFIG=mysql_release"
-              "-DWITH_SSL=system"
-              "-DWITH_ZLIB=system"
-              "-DDEFAULT_CHARSET=utf8"
-              "-DDEFAULT_COLLATION=utf8_general_ci"
-              "-DMYSQL_DATADIR=/var/lib/mysql"
-              "-DMYSQL_UNIX_ADDR=/run/mysqld/mysqld.sock"
-              "-DINSTALL_INFODIR=share/mysql/docs"
-              "-DINSTALL_MANDIR=share/man"
-              "-DINSTALL_PLUGINDIR=lib/mysql/plugin"
-              "-DINSTALL_SCRIPTDIR=bin"
-              "-DINSTALL_INCLUDEDIR=include/mysql"
-              "-DINSTALL_DOCREADMEDIR=share/mysql/docs"
-              "-DINSTALL_SUPPORTFILESDIR=share/mysql"
-              "-DINSTALL_MYSQLSHAREDIR=share/mysql"
-              "-DINSTALL_DOCDIR=share/mysql/docs"
-              "-DINSTALL_SHAREDIR=share/mysql"
-              ;; Get rid of test data.
-              "-DINSTALL_MYSQLTESTDIR="
-              "-DINSTALL_SQLBENCHDIR=")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'install 'remove-extra-binaries
-            (lambda _
-              ;; Remove the 3 *_embedded files, which weigh in at
-              ;; 14 MiB each.
-              (for-each delete-file
-                        (find-files (string-append #$output "/bin")
-                                    "_embedded$"))))
-          (add-after 'install 'wrap-mysql_helpers
-            (lambda* (#:key inputs outputs #:allow-other-keys)
-              (let ((bin (string-append #$output "/bin"))
-                    (gawk (search-input-file inputs "bin/gawk"))
-                    (coreutils (search-input-file inputs "bin/ls"))
-                    (grep (search-input-file inputs "bin/grep"))
-                    (ps (search-input-file inputs "bin/ps"))
-                    (sed (search-input-file inputs "bin/sed")))
-                (wrap-program (search-input-file outputs "bin/mysql_config")
-                  `("PATH" suffix
-                    ,(list (dirname gawk)
-                           (dirname coreutils)
-                           (dirname sed))))
-                (wrap-program (search-input-file outputs "bin/mysqld_safe")
-                  `("PATH" suffix
-                    ,(list (dirname gawk)
-                           (dirname coreutils)
-                           (dirname grep)
-                           (dirname ps)
-                           (dirname sed))))))))))
+     `(#:configure-flags
+       '("-DBUILD_CONFIG=mysql_release"
+         "-DWITH_SSL=system"
+         "-DWITH_ZLIB=system"
+         "-DDEFAULT_CHARSET=utf8"
+         "-DDEFAULT_COLLATION=utf8_general_ci"
+         "-DMYSQL_DATADIR=/var/lib/mysql"
+         "-DMYSQL_UNIX_ADDR=/run/mysqld/mysqld.sock"
+         "-DINSTALL_INFODIR=share/mysql/docs"
+         "-DINSTALL_MANDIR=share/man"
+         "-DINSTALL_PLUGINDIR=lib/mysql/plugin"
+         "-DINSTALL_SCRIPTDIR=bin"
+         "-DINSTALL_INCLUDEDIR=include/mysql"
+         "-DINSTALL_DOCREADMEDIR=share/mysql/docs"
+         "-DINSTALL_SUPPORTFILESDIR=share/mysql"
+         "-DINSTALL_MYSQLSHAREDIR=share/mysql"
+         "-DINSTALL_DOCDIR=share/mysql/docs"
+         "-DINSTALL_SHAREDIR=share/mysql"
+         ;; Get rid of test data.
+         "-DINSTALL_MYSQLTESTDIR="
+         "-DINSTALL_SQLBENCHDIR=")
+       #:phases (modify-phases %standard-phases
+                  (add-after
+                   'install 'remove-extra-binaries
+                   (lambda* (#:key outputs #:allow-other-keys)
+                     (let ((out (assoc-ref outputs "out")))
+                       ;; Remove the 3 *_embedded files, which weigh in at
+                       ;; 14 MiB each.
+                       (for-each delete-file
+                                 (find-files (string-append out "/bin")
+                                             "_embedded$"))
+                       #t)))
+                  (add-after
+                   'install 'wrap-mysql_helpers
+                   (lambda* (#:key inputs outputs #:allow-other-keys)
+                     (let* ((out (assoc-ref outputs "out"))
+                            (bin (string-append out "/bin"))
+                            (awk (assoc-ref inputs "gawk"))
+                            (coreutils (assoc-ref inputs "coreutils"))
+                            (grep (assoc-ref inputs "grep"))
+                            (ps (assoc-ref inputs "procps"))
+                            (sed (assoc-ref inputs "sed")))
+                       (wrap-program (string-append bin "/mysql_config")
+                         `("PATH" ":" suffix
+                           (,(string-append awk "/bin")
+                            ,(string-append coreutils "/bin")
+                            ,(string-append sed "/bin"))))
+                       (wrap-program (string-append bin "/mysqld_safe")
+                         `("PATH" ":" suffix
+                           (,(string-append awk "/bin")
+                            ,(string-append coreutils "/bin")
+                            ,(string-append grep "/bin")
+                            ,(string-append ps "/bin")
+                            ,(string-append sed "/bin"))))))))))
     (native-inputs
      (list bison perl pkg-config))
     (inputs
@@ -1268,7 +1241,7 @@ auto-completion and syntax highlighting.")
            ncurses
            openssl-1.1
            procps
-           rpcsvc-proto                 ; rpcgen
+           rpcsvc-proto ; rpcgen
            sed
            zlib))
     (home-page "https://www.mysql.com/")
@@ -1572,17 +1545,17 @@ and high-availability (HA).")
     (license license:gpl2)))                  ;'COPYING' says "version 2" only
 
 ;; Don't forget to update the other postgresql packages when upgrading this one.
-(define-public postgresql-17
+(define-public postgresql-16
   (package
     (name "postgresql")
-    (version "17.7")
+    (version "16.4")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://ftp.postgresql.org/pub/source/v"
                                   version "/postgresql-" version ".tar.bz2"))
               (sha256
                (base32
-                "1dg9labqgph2idaypb8khdvbag29pr3h4bqv5w8k7kgc08rk97pg"))
+                "0vvd73rzj0sl294v15bh8yslakqv412bxqzlkqxyjwxa8pb6c5wp"))
               (patches (search-patches
                         "postgresql-disable-normalize_exec_path.patch"))))
     (build-system gnu-build-system)
@@ -1612,22 +1585,18 @@ and high-availability (HA).")
           (add-after 'build 'build-contrib
             (lambda _
               (invoke "make" "-C" "contrib")))
-          ;; FIXME: Install manpages too.
-          ;; The 'install-mangpages phase in postgresql-16 fails silently here.
           (add-after 'install 'install-contrib
             (lambda _
-              (invoke "make" "-C" "contrib" "install"))))))
+              (invoke "make" "-C" "contrib" "install")))
+          (add-after 'install 'install-manuals
+            (lambda _
+              (with-directory-excursion "doc/src/sgml"
+                (invoke "make" "install-man")
+                (invoke "make" "postgres.info")
+                (install-file "postgres.info"
+                              (string-append #$output "/share/info"))))))))
     (native-inputs
-     (list bison
-           docbook-xml-4.5
-           docbook-xsl
-           docbook2x
-           flex
-           libxml2
-           libxslt
-           perl
-           pkg-config
-           texinfo))
+     (list docbook-xml-4.5 docbook2x libxml2 perl pkg-config texinfo))
     (inputs
      (list icu4c readline `(,util-linux "lib") openssl zlib))
     (home-page "https://www.postgresql.org/")
@@ -1641,49 +1610,18 @@ TIMESTAMP.  It also supports storage of binary large objects, including
 pictures, sounds, or video.")
     (license (license:x11-style "file://COPYRIGHT"))))
 
-(define-public postgresql-16
-  (package
-    (inherit postgresql-17)
-    (name "postgresql")
-    (version "16.10")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append "https://ftp.postgresql.org/pub/source/v"
-                                  version "/postgresql-" version ".tar.bz2"))
-              (sha256
-               (base32
-                "0hib575m9x3z8c71gkcv9jsyq77d3qk7q2zgzvfy6clwrvs8b16y"))
-              (patches (search-patches
-                        "postgresql-disable-normalize_exec_path.patch"))))
-    (arguments
-     (substitute-keyword-arguments (package-arguments postgresql-17)
-       ((#:phases phases #~%standard-phases)
-        #~(modify-phases #$phases
-            (add-after 'install 'install-manuals
-              (lambda _
-                (with-directory-excursion "doc/src/sgml"
-                  (invoke "make" "install-man")
-                  (invoke "make" "postgres.info")
-                  (install-file "postgres.info"
-                                (string-append #$output "/share/info")))))))))
-    (native-inputs (modify-inputs (package-native-inputs postgresql-17)
-                     (delete "bison")
-                     (delete "docbook-xsl")
-                     (delete "flex")
-                     (delete "libxslt")))))
-
 (define-public postgresql-15
   (package
     (inherit postgresql-16)
     (name "postgresql")
-    (version "15.15")
+    (version "15.8")
     (source (origin
-              (method url-fetch)
+              (inherit (package-source postgresql-16))
               (uri (string-append "https://ftp.postgresql.org/pub/source/v"
                                   version "/postgresql-" version ".tar.bz2"))
               (sha256
                (base32
-                "1ais46b2ij38y75i1w336as03pybyndsd2pp2q8gdjq9igmsllsp"))
+                "0snbxmlygf7m4cxjpscmz3yjn4lnqsw313y9xgpv7vk9k9gm20s4"))
               (patches (search-patches
                         "postgresql-disable-resolve_symlinks.patch"))))
     (native-inputs (modify-inputs native-inputs
@@ -1695,26 +1633,26 @@ pictures, sounds, or video.")
   (package
     (inherit postgresql-15)
     (name "postgresql")
-    (version "14.20")
+    (version "14.13")
     (source (origin
               (inherit (package-source postgresql-15))
               (uri (string-append "https://ftp.postgresql.org/pub/source/v"
                                   version "/postgresql-" version ".tar.bz2"))
               (sha256
                (base32
-                "0sv45dsmyplfys6dfdjdwmrczl46s82x35xdh311nxj02q7z29vm"))))))
+                "0misc5yiklflz96n7wxcdzzg0lcc4ahd0flzqsg6mcjs955krajr"))))))
 
-(define-deprecated/public postgresql-13 #f
+(define-public postgresql-13
   (package
     (inherit postgresql-14)
-    (version "13.23")
+    (version "13.16")
     (source (origin
               (inherit (package-source postgresql-14))
               (uri (string-append "https://ftp.postgresql.org/pub/source/v"
                                   version "/postgresql-" version ".tar.bz2"))
               (sha256
                (base32
-                "1mhz0h7b3dmc0nnxz1wp46j95jhyi3girykkr3gbg4mg4qkwihvf"))))))
+                "0rc8rpsw2lwa5af35zd8iifah02wg2rnn1i890h2h8zh55hvpjy9"))))))
 
 (define-public postgresql postgresql-14)
 
@@ -1753,7 +1691,7 @@ pictures, sounds, or video.")
 (define-public timescaledb
   (package
     (name "timescaledb")
-    (version "2.26.1")
+    (version "2.16.1")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1762,7 +1700,7 @@ pictures, sounds, or video.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0zfm224jyz874pk4r9qlz5c2mn1xjvairhxh6widlbh3mn62m3j8"))
+                "1v17x00a15il4r3rbr0waqjv1nwzy6rcqxgfi2hdk1x235s5dg5h"))
               (modules '((guix build utils)))
               (snippet
                ;; Remove files carrying the proprietary TIMESCALE license.
@@ -1772,7 +1710,8 @@ pictures, sounds, or video.")
                             '("scripts/c_license_header-timescale.h"
                               "scripts/license_tsl.spec"
                               "scripts/sql_license_tsl.sql"
-                              "test/t/001_replication_telemetry.pl"
+                              "test/perl/AccessNode.pm"
+                              "test/perl/DataNode.pm"
                               "test/perl/TimescaleNode.pm"))))))
     (build-system cmake-build-system)
     (arguments
@@ -1856,7 +1795,7 @@ pictures, sounds, or video.")
                  (lambda* (#:rest args)
                    (apply (assoc-ref gnu:%standard-phases 'check)
                           #:test-target "regresschecklocal" args))))))
-    (inputs (list openssl postgresql-17))
+    (inputs (list openssl postgresql))
     (home-page "https://www.timescale.com/")
     (synopsis "Time-series extension for PostgreSQL")
     (description
@@ -3105,7 +3044,7 @@ temporary directory, and destroys it when the perl script exits.")
 (define-public unixodbc
   (package
    (name "unixodbc")
-   (version "2.3.14")
+   (version "2.3.9")
    (source (origin
             (method url-fetch)
             (uri
@@ -3113,7 +3052,7 @@ temporary directory, and destroys it when the perl script exits.")
               "ftp://ftp.unixodbc.org/pub/unixODBC/unixODBC-"
               version ".tar.gz"))
             (sha256
-             (base32 "0wa7a82h5dsba23155gfhh1sp4dsbaxq6pppp6q31z017vg18a2f"))))
+             (base32 "01xj65d02i3yjy7p9z08y9jakcs5szmz4rask868n7387nn3x0sj"))))
    (build-system gnu-build-system)
    (synopsis "Data source abstraction library")
    (description "Unixodbc is a library providing an API with which to access
@@ -3123,64 +3062,6 @@ Driver.")
    ;; COPYING contains copy of lgpl2.1 - but copyright notices just say "LGPL"
    (home-page "https://www.unixodbc.org")))
 
-(define-public sqliteodbc
-  (package
-    (name "sqliteodbc")
-    (version "0.99991")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append "http://www.ch-werner.de/sqliteodbc/"
-                                  name "-" version ".tar.gz"))
-              (sha256
-               (base32
-                "0p4avhqxnd2l49g3vpzwrmdi8wxyqzy0vswalaagmqfdsfwav52d"))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:tests? #f                      ; no check target
-      #:configure-flags
-      #~(list "--disable-static"
-              (string-append "--with-sqlite3=" #$(this-package-input "sqlite"))
-              (string-append "--with-odbc=" #$(this-package-input "unixodbc")))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'install 'create-lib-directory
-            (lambda _
-              (mkdir-p (string-append #$output "/lib"))))
-          (add-after 'install 'remove-extra-sqlite-extensions
-            (lambda _
-              ;; Keep this package focused on the ODBC driver itself.
-              (for-each delete-file
-                        (find-files (string-append #$output "/lib")
-                                    "^libsqlite3_mod_.*\\.(la|so)$"))))
-          (add-after 'install 'install-odbcinst.ini
-            (lambda _
-              (let ((dir (string-append #$output "/share/sqliteodbc")))
-                (mkdir-p dir)
-                (call-with-output-file (string-append dir "/odbcinst.ini")
-                  (lambda (port)
-                    (display
-                     (string-append
-                      "[SQLite3]\n"
-                      "Description = SQLite3 ODBC Driver\n"
-                      "Driver      = " #$output "/lib/libsqlite3odbc.so\n"
-                      "Setup       = " #$output "/lib/libsqlite3odbc.so\n"
-                      "Threading   = 2\n")
-                     port)))))))))
-    (native-search-paths
-     (list (search-path-specification
-            (variable "ODBCSYSINI")
-            (files '("share/sqliteodbc"))
-            (separator #f))))
-    (inputs (list sqlite unixodbc))
-    (home-page "http://www.ch-werner.de/sqliteodbc/")
-    (synopsis "ODBC driver for SQLite")
-    (description
-     "SQLiteODBC provides an ODBC driver for SQLite 3 databases.  It installs
-the shared library and a driver registration file so applications using
-unixODBC can resolve the @code{SQLite3} driver name from a Guix profile.")
-    (license license:tcl/tk)))
-
 (define-public nanodbc
   (package
     (name "nanodbc")
@@ -4182,8 +4063,8 @@ programmatically or as a standalone CLI application.")
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (inputs
-     (list openssl
-           tcl))                        ;for tests
+     `(("libcrypto" ,openssl)
+       ("libtcl8.6" ,tcl))) ; required for running the tests
     (native-inputs
      (list tcl))
     (arguments
@@ -5072,54 +4953,6 @@ postgresql = postgresql://nixbld@/yoyo_test~%")))
 files or Python scripts that define a list of migration steps.")
     (license license:asl2.0)))
 
-(define-public mutastructura
-  (package
-    (name "mutastructura")
-    (version "0.6.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://codeberg.org/jjba23/mutastructura")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "08vzlc5imavqf3bdzgbh70c7z44xjhf05gr7i2g5ksl49lv39gzh"))))
-    (build-system guile-build-system)
-    (arguments
-     (list
-      #:source-directory "src"
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'build 'install-program-files
-            (lambda _
-              (let* ((bin (string-append #$output "/bin"))
-                     (share (string-append #$output "/share")))
-                (copy-recursively "resources"
-                                  (string-append share "/resources"))
-                (install-file "scripts/mutastructura" bin)
-                (install-file "scripts/log.bash"
-                              (string-append share "/scripts/"))
-                (chmod (string-append bin "/mutastructura") #o755)))))))
-    (native-inputs (list guile-3.0))
-    (propagated-inputs (list guile-dbi
-                             guile-dbd-mysql
-                             guile-dbd-sqlite3
-                             guile-dbd-postgresql
-                             guile-gcrypt))
-    (inputs (list guile-3.0 bash-minimal))
-    (home-page "https://codeberg.org/jjba23/mutastructura")
-    (synopsis "Relational database schema migrations powered by Guile Scheme")
-    (description
-     "Mutastructura provides a familiar, declarative and transactional
-approach to managing database states. It exposes a user-friendly 
-@acronym{CLI, command-line interface} and has support for PostgreSQL, MySQL, and SQLite.
-It also exposes library functions and can be imported and used directly from other Guile code.
-
-Features include executing migrations transactionally and computing SHA256
-checksums to track schema evolution in a @code{migrations_history} table.")
-    (license license:agpl3+)))
-
 (define-public python-mysqlclient
   (package
     (name "python-mysqlclient")

gnu/packages/datalog.scm

@@ -1,113 +0,0 @@
-;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2026 Arun Isaac <arunisaac@systemreboot.net>
-;;;
-;;; This file is part of GNU Guix.
-;;;
-;;; GNU Guix is free software; you can redistribute it and/or modify it
-;;; under the terms of the GNU General Public License as published by
-;;; the Free Software Foundation; either version 3 of the License, or (at
-;;; your option) any later version.
-;;;
-;;; GNU Guix is distributed in the hope that it will be useful, but
-;;; WITHOUT ANY WARRANTY; without even the implied warranty of
-;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-;;; GNU General Public License for more details.
-;;;
-;;; You should have received a copy of the GNU General Public License
-;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
-
-(define-module (gnu packages datalog)
-  #:use-module (gnu packages bison)
-  #:use-module (gnu packages compression)
-  #:use-module (gnu packages cpp)
-  #:use-module (gnu packages flex)
-  #:use-module (gnu packages libffi)
-  #:use-module (gnu packages ncurses)
-  #:use-module (gnu packages python)
-  #:use-module (gnu packages sqlite)
-  #:use-module (guix build-system cmake)
-  #:use-module (guix gexp)
-  #:use-module (guix git-download)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix packages))
-
-(define-public souffle
-  (package
-    (name "souffle")
-    (version "2.5")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/souffle-lang/souffle")
-                     (commit version)))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "1lrw69g02b17vxxz4g7cj8hbmc39wlzl80vl5fwy40a6b9pxwrsj"))
-              (snippet
-               #~(begin
-                   ;; Delete bundled dependencies. souffle also uses a forked
-                   ;; and modified version of json11. We cannot unbundle
-                   ;; that.
-                   (for-each delete-file
-                             (list "licenses/TCBRINDLE SPAN.txt"
-                                   "licenses/TINYFORMAT.txt"
-                                   "src/include/souffle/utility/span.h"
-                                   "src/include/souffle/utility/tinyformat.h"))))))
-    (build-system cmake-build-system)
-    (arguments
-     (list #:configure-flags #~(list "-DSOUFFLE_GIT=OFF"
-                                     (string-append "-DPACKAGE_VERSION="
-                                                    #$version))
-           ;; We disable these tests since they fail with gcc 14. This issue
-           ;; has been reported upstream:
-           ;; https://github.com/souffle-lang/souffle/issues/2576
-           #:test-exclude (string-join
-                           (list "syntactic/cpp_keywords_run_souffle"
-                                 "syntactic/cpp_keywords_c_run_souffle"
-                                 "syntactic/cpp_keywords_compare_std_outputs"
-                                 "syntactic/cpp_keywords_compare_csv"
-                                 "syntactic/cpp_keywords_c_compare_std_outputs"
-                                 "syntactic/cpp_keywords_c_compare_csv")
-                           "|")
-           #:phases
-           #~(modify-phases %standard-phases
-               (add-after 'unpack 'replace-bundled-libraries
-                 (lambda _
-                   ;; Patch souffle to use tinyformat from Guix.
-                   (substitute* (find-files "src" "\\.(cpp|h)$")
-                     (("#include \"souffle/utility/tinyformat.h\"")
-                      "#include <tinyformat.h>"))
-                   ;; Replace span.h with a header that uses span from Guix
-                   ;; and provides the same namespace.
-                   (call-with-output-file "src/include/souffle/utility/span.h"
-                     (lambda (port)
-                       (display "#pragma once
-#include <span.hpp>
-namespace souffle {
-  using tcb::span;
-}
-"
-                                port))))))))
-    (inputs
-     (list libffi
-           ncurses
-           python
-           span
-           sqlite
-           zlib))
-    (native-inputs
-     (list bison
-           flex
-           tinyformat))
-    (home-page "https://souffle-lang.github.io/")
-    (synopsis "Datalog variant")
-    (description "Soufflé is a variant of Datalog for tool designers crafting
-analyses in Horn clauses.  Soufflé synthesizes a native parallel C++ program
-from a logic specification.  The Soufflé language is similar to Datalog (but
-has terms known as records), and is frequently used as a domain-specific
-language for analysis problems.")
-    (license (list license:upl          ; main license
-                   ;; src/include/souffle/profile/htmlJsChartistPlugin.h
-                   ;; src/include/souffle/utility/json11.h
-                   license:expat))))

gnu/packages/debian.scm

@@ -20,6 +20,18 @@
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 (define-module (gnu packages debian)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix download)
+  #:use-module (guix git-download)
+  #:use-module (guix gexp)
+  #:use-module (guix packages)
+  #:use-module (guix utils)
+  #:use-module (guix build-system cmake)
+  #:use-module (guix build-system copy)
+  #:use-module (guix build-system gnu)
+  #:use-module (guix build-system perl)
+  #:use-module (guix build-system trivial)
+  #:use-module (gnu packages adns)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages backup)
   #:use-module (gnu packages base)
@@ -28,7 +40,6 @@
   #:use-module (gnu packages crypto)
   #:use-module (gnu packages databases)
   #:use-module (gnu packages dbm)
-  #:use-module (gnu packages dns)
   #:use-module (gnu packages gettext)
   #:use-module (gnu packages gnupg)
   #:use-module (gnu packages guile)
@@ -42,17 +53,6 @@
   #:use-module (gnu packages tls)
   #:use-module (gnu packages web)
   #:use-module (gnu packages wget)
-  #:use-module (guix build-system cmake)
-  #:use-module (guix build-system copy)
-  #:use-module (guix build-system gnu)
-  #:use-module (guix build-system perl)
-  #:use-module (guix build-system trivial)
-  #:use-module (guix download)
-  #:use-module (guix gexp)
-  #:use-module (guix git-download)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix packages)
-  #:use-module (guix utils)
   #:use-module (srfi srfi-1)
   #:use-module (srfi srfi-26))
 

gnu/packages/debug.scm

@@ -978,27 +978,26 @@ engineering.")
 (define-public seer-gdb
   (package
     (name "seer-gdb")
-    (version "2.7")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/epasveer/seer")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1szfqybqr5z982vian4f0hpsagiqapzys3axwibyjyg5whjswva1"))))
+    (version "1.16")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                     (url "https://github.com/epasveer/seer.git")
+                     (commit (string-append "v" version))))
+              (file-name (string-append name "-" version "-checkout"))
+              (sha256
+               (base32
+                "0jdvyg2jab1pvf36pvkyrfsg2wyy8zp1qx0v2ksclgrnr1hja6k6"))))
     (build-system qt-build-system)
     (arguments
-     (list
-      #:tests? #f                       ;tests are strangely manual
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'chdir
-            (lambda _
-              (chdir "src"))))))
+     `(#:tests? #f ; Those are strangely manual
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'chdir
+           (lambda _
+             (chdir "src"))))))
     (inputs
-     (list gdb qtbase qtcharts qtsvg qtwayland))
+     (list qtbase-5 qtcharts-5 qtwayland-5))
     (synopsis "GUI frontend for GDB")
     (description "This package provides a frontend to GDB, the GNU debugger.")
     (home-page "https://github.com/epasveer/seer")
@@ -1038,7 +1037,7 @@ to aid in debugging.")
 (define-public delve
   (package
     (name "delve")
-    (version "1.26.3")
+    (version "1.25.2")
     (source
      (origin
        (method git-fetch)
@@ -1048,7 +1047,7 @@ to aid in debugging.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "0mf363l7md4193cgrpb6hkhmsgnlnrx44q1bzw3zq0bmjrcg3fj7"))
+         "1b6vp6m4vjx4wfs1djhpizvz40s563jwld9lgjq82svaiilrmlqa"))
        (snippet
         #~(begin (use-modules (guix build utils))
                  (delete-file-recursively "vendor")))))
@@ -1066,7 +1065,7 @@ to aid in debugging.")
      (list go-github-com-cilium-ebpf
            go-github-com-cosiner-argv
            go-github-com-creack-pty
-           go-github-com-derekparker-trie-v3
+           go-github-com-derekparker-trie
            go-github-com-go-delve-liner
            go-github-com-google-go-dap
            go-github-com-hashicorp-golang-lru

gnu/packages/diffoscope.scm

@@ -79,7 +79,7 @@
 (define-public diffoscope
   (package
     (name "diffoscope")
-    (version "317")
+    (version "315")
     (source
      (origin
        (method git-fetch)
@@ -88,7 +88,7 @@
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "13r96c49wrpx0xa8bbkki832w58gjdgqb4khjsaawk5mb5yv4c39"))))
+        (base32 "1q2q60hw36d1capqdrg6gp2220dg87bmxgmk52m7yml4xw13zi2p"))))
     (build-system pyproject-build-system)
     (arguments
      (list

gnu/packages/disk.scm

@@ -31,7 +31,7 @@
 ;;; Copyright © 2023 Zheng Junjie <873216071@qq.com>
 ;;; Copyright © 2024-2025 Sharlatan Hellseher <sharlatanus@gmail.com>
 ;;; Copyright © 2025 Ashish SHUKLA <ashish.is@lostca.se>
-;;; Copyright © 2025, 2026 Vinicius Monego <monego@posteo.net>
+;;; Copyright © 2025 Vinicius Monego <monego@posteo.net>
 ;;; Copyright © 2025 Grigory Shepelev <shegeley@gmail.com>
 ;;; Copyright © 2026 Luis Guilherme Coelho <lgcoelho@disroot.org>
 
@@ -94,8 +94,6 @@
   #:use-module (gnu packages gnome)
   #:use-module (gnu packages gnupg)
   #:use-module (gnu packages golang-build)
-  #:use-module (gnu packages golang-check)
-  #:use-module (gnu packages golang-compression)
   #:use-module (gnu packages golang-xyz)
   #:use-module (gnu packages graphics)
   #:use-module (gnu packages gtk)
@@ -266,14 +264,14 @@ tmpfs/ramfs filesystems.")
 (define-public parted
   (package
     (name "parted")
-    (version "3.7")
+    (version "3.6")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnu/parted/parted-"
                                   version ".tar.xz"))
               (sha256
                (base32
-                "0yzga4cjq3yplqs47dl9714vwc3v3v8nxrj80rdc5wx4c5syb380"))))
+                "04p6b4rygrfd1jrskwrx3bn2icajg1mvbfhyc0c9l3ya7kixnhrv"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -296,7 +294,6 @@ tmpfs/ramfs filesystems.")
        (,util-linux "lib")))
     (native-inputs
      (list gettext-minimal
-           pkg-config
 
            ;; For the tests.
            e2fsprogs
@@ -311,6 +308,18 @@ tmpfs/ramfs filesystems.")
 tables.  It includes a library and command-line utility.")
     (license license:gpl3+)))
 
+(define-public parted-3.4
+  (package
+    (inherit parted)
+    (version "3.4")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://gnu/parted/parted-"
+                                  version ".tar.xz"))
+              (sha256
+               (base32
+                "0hjkv84x1bs2qqyx1fnzjqyyqrhv7kpdbq9bgydmi99d8wi80ag1"))))))
+
 (define-public fdisk
   (package
     (name "fdisk")
@@ -411,49 +420,6 @@ tables, and it understands a variety of different formats.")
 similarity.")
     (license license:gpl3+)))
 
-(define-public gdu
-  (package
-    (name "gdu")
-    (version "5.35.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/dundee/gdu")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "051xf3wncdiavjwyl9djmni5vd2dqjgn6drkw2nm21c9l0rjfv6d"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:install-source? #f
-      #:import-path "github.com/dundee/gdu/v5/cmd/gdu"
-      #:unpack-path "github.com/dundee/gdu/v5"))
-    (native-inputs
-     (list go-github-com-dgraph-io-badger-v4
-           go-github-com-fatih-color
-           go-github-com-gdamore-tcell-v2
-           go-github-com-h2non-filetype
-           go-github-com-maruel-natural
-           go-github-com-mattn-go-isatty
-           go-github-com-pkg-errors
-           go-github-com-rivo-tview
-           go-github-com-sirupsen-logrus
-           go-github-com-spf13-cobra
-           go-github-com-stretchr-testify
-           go-github-com-ulikunitz-xz
-           go-golang-org-x-sys
-           go-golang-org-x-text
-           go-gopkg-in-yaml-v3
-           go-modernc-org-sqlite))
-    (home-page "https://github.com/dundee/gdu")
-    (synopsis "Disk usage analyzer")
-    (description "Gdu is a disk usage analyzer written in Go.  It is intended
-primarily for SSD disks where it can fully utilize parallel processing, but it
-also works on HDDs.")
-    (license license:expat)))
-
 (define-public gpart
   ;; The latest (0.3) release is from 2015 and is missing a crash fix.
   (let ((commit "ec03350a01ad69708b5a3e2d47b8e002b0eba6c9")
@@ -1265,7 +1231,7 @@ passphrases.")
 (define-public ndctl
   (package
     (name "ndctl")
-    (version "84")
+    (version "78")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1274,7 +1240,7 @@ passphrases.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0jal7w4mk5l5j0qfays27kya8n1h2qwkncl0s317rfxp56bkjp6y"))))
+                "0rhmxjajxxslsikixlf9cdg5vcn42h7zzqkqj5p5pshxch368kn0"))))
     (build-system meson-build-system)
     (arguments
      ;; The test suite runs but SKIPs all tests: do not consider this tested!

gnu/packages/distributed.scm

@@ -51,7 +51,7 @@
 (define-public boinc-client
   (package
     (name "boinc-client")
-    (version "8.2.12")
+    (version "8.2.9")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -62,7 +62,7 @@
               (file-name (git-file-name "boinc" version))
               (sha256
                (base32
-                "0531n0yij1gh06xy6plwivbpmhqfq15jizg3rdgri40nz41rzbgr"))))
+                "0ik9423ii6kal29jdn907pxy8w86zpi8n158qx1gcsh8lsaif1v5"))))
     (build-system gnu-build-system)
     (arguments
      (list

gnu/packages/django.scm

@@ -201,13 +201,13 @@ your project into different processes.")
 (define-public python-django
   (package
     (name "python-django")
-    (version "5.2.13")
+    (version "5.2.11")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "django" version))
        (sha256
-        (base32 "1i1vlffzhwbzp6r6y8ycvwklc45diy4c6i897z379l48a7dqj5d3"))))
+        (base32 "1lq2dynfw6jmvzrzgfrlij2qnxcksaxgnrfr0pj3bvmrv0m2jbbz"))))
     (build-system pyproject-build-system)
     (arguments
      '(#:test-flags
@@ -298,6 +298,22 @@ to the @dfn{don't repeat yourself} (DRY) principle.")
                       ;; This CVE is fixed in 4.1.9.
                       "CVE-2023-31047"))))))
 
+(define-public python-django-4
+  (package
+    (inherit python-django)
+    (name "python-django-4")
+    (version "4.2.28")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (pypi-uri "django" version))
+        (sha256
+         (base32 "1znc2q1m9p2kxz1rkfkh2hg2sx6i3aqv72zsraad7bci364cvfd4"))))
+    (arguments
+     (substitute-keyword-arguments arguments
+       ((#:phases phases)
+        #~(modify-phases #$phases (delete 'delete-sitecustomize)))))))
+
 (define-public python-django-cache-url
   (package
     (name "python-django-cache-url")
@@ -533,7 +549,6 @@ when coding custom template tags.")
        (uri (git-reference
              (url "https://github.com/jazzband/django-taggit")
              (commit version)))
-       (file-name (git-file-name name version))
        (sha256
         (base32
          "1i8an3wcl7nygl5f565jcpyhyws9gabawazggxpf6m3vklxn3cj0"))))

gnu/packages/dlang.scm

@@ -10,7 +10,6 @@
 ;;; Copyright © 2022 ( <paren@disroot.org>
 ;;; Copyright © 2022 Esther Flashner <esther@flashner.co.il>
 ;;; Copyright © 2025-2026 Jonas Meeuws <jonas.meeuws@gmail.com>
-;;; Copyright © 2026 Daniel Littlewood <dan@danielittlewood.xyz>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -109,7 +108,9 @@
            (lambda _
              (invoke "cmake" "--install" "."))))))
     (inputs
-     `(("zlib" ,zlib)))
+     `(("libconfig" ,libconfig)
+       ("libedit" ,libedit)
+       ("zlib" ,zlib)))
     (native-inputs
      `(("lld-wrapper" ,(make-lld-wrapper lld-17 #:lld-as-ld? #t))
        ("llvm" ,llvm-17)
@@ -321,11 +322,11 @@ integration tests...\n")
                                  "|core.thread.osthread-debug-shared")))
                            (#t `("")))))))))))))
     (native-inputs
-     (modify-inputs native-inputs
-       (delete "llvm")
-       (replace "ldc" ldc-bootstrap)
-       (append clang-17                 ;propagates llvm and clang-runtime
-               python-lit)))
+     (append (delete "llvm"
+                     (alist-replace "ldc" (list ldc-bootstrap)
+                                    (package-native-inputs ldc-bootstrap)))
+         `(("clang" ,clang-17)          ;propagates llvm and clang-runtime
+           ("python-lit" ,python-lit))))
     (properties
      (alist-delete 'hidden? (package-properties ldc-bootstrap)))))
 

gnu/packages/dns.scm

@@ -1,13 +1,12 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
 ;;; Copyright © 2016 Mark H Weaver <mhw@netris.org>
-;;; Copyright © 2016, 2018 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2015-2018, 2020 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 John Darrington <jmd@gnu.org>
 ;;; Copyright © 2016 Nikita <nikita@n0.is>
 ;;; Copyright © 2016–2022 Tobias Geerinckx-Rice <me@tobias.gr>
-;;; Copyright © 2016, 2019-2021 Marius Bakke <mbakke@fastmail.com>
+;;; Copyright © 2016, 2020 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2017 Vasile Dumitrascu <va511e@yahoo.com>
 ;;; Copyright © 2017 Gregor Giesen <giesen@zaehlwerk.net>
 ;;; Copyright © 2022 Oleg Pykhalov <go.wigust@gmail.com>
@@ -22,11 +21,9 @@
 ;;; Copyright © 2021, 2024 Zheng Junjie <873216071@qq.com>
 ;;; Copyright © 2023 Bruno Victal <mirai@makinata.eu>
 ;;; Copyright © 2023 Hilton Chain <hako@ultrarare.space>
-;;; Copyright © 2023 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2024 John Kehayias <john.kehayias@protonmail.com>
-;;; Copyright © 2024-2026 Ashish SHUKLA <ashish.is@lostca.se>
+;;; Copyright © 2024, 2025 Ashish SHUKLA <ashish.is@lostca.se>
 ;;; Copyright © 2025 Artyom V. Poptsov <poptsov.artyom@gmail.com>
-;;; Copyright © 2026 Anderson Torres <anderson.torres.8519@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -49,12 +46,12 @@
   #:use-module (gnu packages base)
   #:use-module (gnu packages bash)
   #:use-module (gnu packages check)
-  #:use-module (gnu packages compression)
-  #:use-module (gnu packages crypto)
   #:use-module (gnu packages curl)
   #:use-module (gnu packages databases)
-  #:use-module (gnu packages datastructures)
   #:use-module (gnu packages documentation)
+  #:use-module (gnu packages compression)
+  #:use-module (gnu packages crypto)
+  #:use-module (gnu packages datastructures)
   #:use-module (gnu packages elf)
   #:use-module (gnu packages flex)
   #:use-module (gnu packages freedesktop)
@@ -68,7 +65,6 @@
   #:use-module (gnu packages libidn)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages lua)
-  #:use-module (gnu packages m4)
   #:use-module (gnu packages ncurses)
   #:use-module (gnu packages nettle)
   #:use-module (gnu packages networking)
@@ -77,8 +73,6 @@
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages protobuf)
   #:use-module (gnu packages python)
-  #:use-module (gnu packages python-build)
-  #:use-module (gnu packages python-web)
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages ragel)
   #:use-module (gnu packages serialization)
@@ -90,176 +84,17 @@
   #:use-module (gnu packages web)
   #:use-module (gnu packages xml)
   #:use-module (gnu packages)
-  #:use-module (guix build-system cmake)
-  #:use-module (guix build-system copy)
-  #:use-module (guix build-system glib-or-gtk)
-  #:use-module (guix build-system gnu)
-  #:use-module (guix build-system meson)
-  #:use-module (guix build-system pyproject)
-  #:use-module (guix build-system python)
-  #:use-module (guix download)
   #:use-module (guix gexp)
-  #:use-module (guix git-download)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module ((guix search-paths) #:select ($SSL_CERT_DIR $SSL_CERT_FILE))
-  #:use-module (guix utils))
-
-(define-public adns
-  (package
-    (name "adns")
-    (version "1.6.1")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "git://git.chiark.greenend.org.uk/~ianmdlvl/adns.git")
-              (commit (string-append "adns-" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32
-         "0ln3l5j7wb1xazrzl76p9xar52p6l2k1cwy7jazxw1acl71k9h5n"))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      ;; INFO: Tests expect real name resolution to work.
-      #:tests? #f
-      #:configure-flags
-      #~(list
-         ;; Make sure the programs under bin/ find libadns.so.
-         (string-append "LDFLAGS=-Wl,-rpath -Wl,"
-                        #$output:out
-                        "/lib"))))
-    (native-inputs
-     (list m4))
-    (home-page "https://www.gnu.org/software/adns/")
-    (synopsis "Asynchronous DNS client library and utilities")
-    (description
-     "GNU adns is a C library that provides easy-to-use @acronym{DNS, Domain
-Name System} resolution functionality.  The library is asynchronous, allowing
-several concurrent calls.  The package also includes several command-line
-utilities for use in scripts.")
-    (license license:gpl3+)))
-
-(define-public c-ares
-  (package
-    (name "c-ares")
-    (version "1.34.4")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append
-             "https://github.com/c-ares/c-ares/releases/download/v"
-             version "/" name "-" version ".tar.gz"))
-       (sha256
-        (base32
-         "0br2msk3bpl5myhjp9vr5j2scpspvbg2fpnz69dcrr4ycpnxnf7s"))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'check 'filter-live-tests
-            (lambda _
-              ;; Filter tests that require internet access.
-              (setenv "GTEST_FILTER" "-*.Live*:*.FamilyV4*")))
-          #$@(if (system-hurd?)
-                 #~((add-after 'unpack 'skip-tests
-                      (lambda _
-                        (substitute* "test/ares-test-main.cc"
-                          (("(^| )main *\\(.*" all)
-                           (string-append all "  exit (77);\n")))))
-                    (add-after 'filter-live-tests 'filter-hurd-tests
-                      (lambda _
-                        (setenv "GTEST_FILTER"
-                                (string-append
-                                 (getenv "GTEST_FILTER")
-                                 ":.*Basic/2"
-                                 ":.*CancelImmediate/2"
-                                 ":.*CancelImmediateGetHostByAddr/2"
-                                 ":.*CancelLater/1"
-                                 ":.*FamilyUnspecified/2"
-                                 ":.*FamilyV6/2"
-                                 ":.*GetAddrInfoParallelLookups/1"
-                                 ":.*GetHostByAddrDestroy/2"
-                                 ":.*GetHostByNameCNAMENoData/2"
-                                 ":.*GetHostByNameDestroyAbsolute/2"
-                                 ":.*GetHostByNameDestroyRelative/2"
-                                 ":.*GetHostByNameParallelLookups/1"
-                                 ":.*HostAlias/2"
-                                 ":.*HostAliasMissing/2"
-                                 ":.*HostAliasMissingFile/2"
-                                 ":.*NotImplResponse/2"
-                                 ":.*RefusedResponse/2"
-                                 ":.*Resend/1"
-                                 ":.*RetryWithoutEDNS/2"
-                                 ":.*SearchDomains/2"
-                                 ":.*SearchDomainsBare/2"
-                                 ":.*SearchDomainsServFailOnAAAA/2"
-                                 ":.*SearchDomainsWithResentReply/1"
-                                 ":.*SearchHighNdots/2"
-                                 ":.*SearchNoDataThenFail/2"
-                                 ":.*SearchNoDataThenNoDataBare/2"
-                                 ":.*SearchNoDataThenSuccess/2"
-                                 ":.*ServFailResponse/2"
-                                 ":.*SimpleQuery/2"
-                                 ":.*SockCallback/2"
-                                 ":.*SockConfigureCallback/2"
-                                 ":.*SortListV4/2"
-                                 ":.*SortListV6/2"
-                                 ":.*ThirdServer/2"
-                                 ":.*TruncationRetry/1"
-                                 ":.*UnspecifiedFamilyCname6A4/2"
-                                 ":.*UnspecifiedFamilyV4/2"
-                                 ":.*UnspecifiedFamilyV6/2")))))
-                 #~()))))
-    (native-inputs
-     (list pkg-config))
-    (home-page "https://c-ares.haxx.se/")
-    (synopsis "C library for asynchronous DNS requests")
-    (description
-     "C-ares is a C library that performs DNS requests and name resolution
-asynchronously.  It is intended for applications which need to perform DNS
-queries without blocking, or need to perform multiple DNS queries in parallel.
-The primary examples of such applications are servers which communicate with
-multiple clients and programs with graphical user interfaces.")
-    (license (license:x11-style "https://c-ares.haxx.se/license.html"))))
-
-(define-public c-ares-for-node-lts
-  (hidden-package c-ares))
-
-(define-public c-ares-for-node-bootstrap
-  (hidden-package
-   (package
-     (inherit c-ares)
-     (version "1.18.1")
-     (source
-      (origin
-        (method url-fetch)
-        (uri (string-append
-              "https://c-ares.haxx.se/download/c-ares-" version
-              ".tar.gz"))
-        (sha256
-         (base32
-          "1kxviskwsaa7dcgscvssxa8ps88pdq7kq4z93gxvz7sam2l54z8s")))))))
-
-;; INFO: gRPC requires a c-ares built with CMake in order to get the .cmake
-;; modules.  We can not build c-ares itself with CMake because that would
-;; introduce a circular dependency through nghttp2.
-;;
-;; TODO: It would be nice if we could extract the modules somehow and make
-;; them work with the "normal" c-ares package instead of building a whole new
-;; library.
-(define-public c-ares/cmake
-  (hidden-package
-   (package
-     (inherit c-ares)
-     (build-system cmake-build-system)
-     (arguments
-      (list
-       ;; INFO: Tests require name resolution (the normal variant runs no
-       ;; tests).
-       #:tests? #f)))))
+  #:use-module (guix download)
+  #:use-module (guix git-download)
+  #:use-module (guix utils)
+  #:use-module (guix build-system copy)
+  #:use-module (guix build-system glib-or-gtk)
+  #:use-module (guix build-system gnu)
+  #:use-module (guix build-system meson))
 
 (define-public cloudflare-cli
   (let ((commit "2d986d3ec1b0e3158c4bd40e8918947cb74aa392")
@@ -308,58 +143,6 @@ protocol.")
       (home-page "https://github.com/earlchew/cloudflare-cli")
       (license license:expat))))
 
-(define-public ddclient
-  (package
-    (name "ddclient")
-    (version "4.0.0")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/ddclient/ddclient")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0sz4f7qx4yjg6q6ybhzilb7f0kshz46c54y3i4hq2nww2bhkc8a4"))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'bootstrap 'patch-ddclient.in-shebang
-            (lambda _
-              ;; This is run in the bootstrap phase, so patch before
-              (patch-shebang "ddclient.in")))
-          (add-after 'install 'wrap-program
-            (lambda* (#:key inputs #:allow-other-keys)
-              (wrap-program (string-append #$output "/bin/ddclient")
-                `("PERL5LIB" ":" prefix
-                  ,(map (lambda (input-name)
-                          (string-append (assoc-ref inputs input-name)
-                                         "/lib/perl5/site_perl"))
-                        '("perl-json")))))))))
-    (native-inputs
-     (list autoconf
-           automake
-           perl-http-daemon
-           perl-plack
-           perl-test-mockmodule
-           perl-test-tcp
-           perl-test-warnings))
-    (inputs
-     (list curl
-           perl
-           perl-json
-           bash-minimal))
-    (home-page "https://github.com/ddclient/ddclient")
-    (synopsis "Dynamic DNS update client")
-    (description
-     "ddclient is used to update dynamic DNS entries for accounts on many
-dynamic DNS services.  It supports a wide range of routers and protocols,
-including Cloudflare, Namecheap, DynDNS, FreeDNS, Google Domains, and many
-more.")
-    (license license:gpl2+)))
-
 (define-public ldns
   (package
     (name "ldns")
@@ -555,39 +338,6 @@ and BOOTP/TFTP for network booting of diskless machines.")
     ;; Source files only say GPL2 and GPL3 are allowed.
     (license (list license:gpl2 license:gpl3))))
 
-(define-public dnsupdate
-  (package
-    (name "dnsupdate")
-    (version "0.4.1")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/lopsided98/dnsupdate")
-              (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0bp6mm0yhg4hs698xdmvcfad4jqf5rgb1cab88pfzyx9w52x0ag6"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list #:test-backend #~'unittest
-           #:test-flags #~'("discover" "-p" "*_test.py")))
-    (native-inputs
-     (list python-setuptools))
-    (propagated-inputs
-     (list python-beautifulsoup4
-           python-netifaces
-           python-pyyaml
-           python-requests))
-    (home-page "https://github.com/lopsided98/dnsupdate")
-    (synopsis "Modern and flexible dynamic DNS client")
-    (description
-     "Dnsupdate is a dynamic DNS client that provides support for multiple DNS
-services, including Afraid.org FreeDNS, Cloudflare, IETF standard DNS
-updates (nsupdate), and custom HTTP-based services.  It uses YAML
-configuration files and supports multiple address detection methods.")
-    (license license:gpl3+)))
-
 ;; 'bind' is the name of a built-in Guile procedure, which is why we choose a
 ;; different name here.
 (define-public isc-bind
@@ -841,14 +591,14 @@ to result in system-wide compromise.")
 (define-public unbound
   (package
     (name "unbound")
-    (version "1.25.1")
+    (version "1.24.2")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://www.unbound.net/downloads/unbound-"
                            version ".tar.gz"))
        (sha256
-        (base32 "0vsqmgnq7ibi0b3akzy45nqf0wazmb0bmpk2fp8wyn89gckvds0g"))))
+        (base32 "1nwwwmwazwx40nm88lhh7k1basml2ai6j9q30gnclvca00zbbrs4"))))
     (build-system gnu-build-system)
     (outputs '("out" "python"))
     (native-inputs

gnu/packages/docker.scm

@@ -45,7 +45,6 @@
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)
   #:use-module (gnu packages check)
-  #:use-module (gnu packages containers)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages glib)
   #:use-module (gnu packages golang)
@@ -199,50 +198,6 @@ enforce convention and best practices for metrics collection in Docker
 projects.")
     (license (list license:asl2.0 license:cc-by-sa4.0))))
 
-(define-public go-github-com-moby-policy-helpers
-  (package
-    (name "go-github-com-moby-policy-helpers")
-    (version "0.0.0-20260507153417-a39d60132186")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/moby/policy-helpers")
-              (commit (go-version->git-ref version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "12fa602jianip7dg98f2i9i686s2a9bsclw8sqxw1ac1v19qlqr8"))
-       (modules '((guix build utils)))
-       (snippet '(delete-file-recursively "vendor"))))
-    (build-system go-build-system)
-    (arguments
-     (list
-      #:go go-1.25
-      #:embed-files #~(list ".*\\.json")
-      #:import-path "github.com/moby/policy-helpers"))
-    (native-inputs
-     (list go-github-com-stretchr-testify))
-    (propagated-inputs
-     (list go-github-com-containerd-containerd-v2
-           go-github-com-containerd-errdefs
-           go-github-com-containerd-platforms
-           go-github-com-distribution-reference
-           go-github-com-gofrs-flock
-           go-github-com-in-toto-in-toto-golang
-           go-github-com-opencontainers-go-digest
-           go-github-com-opencontainers-image-spec
-           go-github-com-pkg-errors
-           go-github-com-sigstore-protobuf-specs
-           go-github-com-sigstore-sigstore
-           go-github-com-sigstore-sigstore-go
-           go-github-com-theupdateframework-go-tuf-v2
-           go-golang-org-x-sync))
-    (home-page "https://github.com/moby/policy-helpers")
-    (synopsis "Policy helpers for Docker")
-    (description "This package provides a policy helpers for Moby (Docker)
-and BuildKit.  It is a work in progress.")
-    (license license:asl2.0)))
-
 (define-public python-docker
   (package
     (name "python-docker")
@@ -373,26 +328,6 @@ application’s services.  Then, using a single command, the containers are
 created and all the services are started as specified in the configuration.")
     (license license:asl2.0)))
 
-(define-public docker-policy-helper
-  (package/inherit go-github-com-moby-policy-helpers
-    (name "docker-policy-helper")
-    (arguments
-     (substitute-keyword-arguments arguments
-       ((#:import-path _) "github.com/moby/policy-helpers/cmd/policy-helper")
-       ((#:install-source? _ #t) #f)
-       ((#:skip-build? _ #t) #f)
-       ((#:tests? _ #t) #f)
-       ((#:unpack-path _ "") "github.com/moby/policy-helpers")
-       ((#:phases phases '%standard-phases)
-        #~(modify-phases #$phases
-            (add-after 'install 'fix-bin-name
-              (lambda _
-                (rename-file (string-append #$output "/bin/policy-helper")
-                             (string-append #$output "/bin/docker-policy-helper"))))))))
-    (native-inputs (package-propagated-inputs go-github-com-moby-policy-helpers))
-    (propagated-inputs '())
-    (inputs '())))
-
 (define-public python-docker-pycreds
   (package
     (name "python-docker-pycreds")

gnu/packages/documentation.scm

@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014, 2018, 2026 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2014, 2018 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2014, 2016 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
@@ -70,7 +70,6 @@
   #:use-module (gnu packages qt)
   #:use-module (gnu packages sqlite)
   #:use-module (gnu packages sphinx)
-  #:use-module (gnu packages tex)
   #:use-module (gnu packages uglifyjs)
   #:use-module (gnu packages xml)
   #:use-module (gnu packages xorg))
@@ -109,13 +108,10 @@
                           #$output)
                          (("\\$cfg\\{'TMPSPACE'\\} = q'[^']*'")
                           "$cfg{'TMPSPACE'} = q'/tmp'")))))))
-    (propagated-inputs (list texlive-preview texlive-xcolor texlive-dvips))
     (inputs (list perl netpbm ghostscript))
     (synopsis "LaTeX documents to HTML")
     (description "LaTeX2HTML is a utility that converts LaTeX documents to web
-pages in HTML.  Since there are many different latex packages, it is expected
-that the user has their latex installation set up correctly when invoking
-@code{latex2html}.")
+pages in HTML.")
     (home-page "https://www.latex2html.org/")
     (license license:gpl2+)))
 
@@ -192,20 +188,21 @@ markup) can be customized and extended by the user.")
 
 (define-deprecated asciidoc-py3 asciidoc)
 
-(define-public doxygen-1.16
+(define-public doxygen
   (package
     (name "doxygen")
-    (version "1.16.1")
+    (version "1.14.0")
     (home-page "https://www.doxygen.nl/")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (list (string-append home-page "files/doxygen-" version
-                                 ".src.tar.gz")
-                  (string-append "mirror://sourceforge/doxygen/rel-" version
-                                 "/doxygen-" version ".src.tar.gz")))
-       (sha256
-        (base32 "1a33w82ln692qsf3ls0j31f6khljjs1cy3bwd70pra2fa4xy6710"))))
+    (source (origin
+              (method url-fetch)
+              (uri (list (string-append home-page "files/doxygen-"
+                                        version ".src.tar.gz")
+                         (string-append "mirror://sourceforge/doxygen/rel-"
+                                        version "/doxygen-" version
+                                        ".src.tar.gz")))
+              (sha256
+               (base32
+                "0pbbdvc1zxps6mi58bry16rcrdw6b9gvf9nhv0kp60qkmc8nslyl"))))
     (build-system cmake-build-system)
     (native-inputs
      (list bison
@@ -249,25 +246,6 @@ IDL (Corba, Microsoft, and UNO/OpenOffice flavors), Fortran, VHDL, Tcl,
 and to some extent D.")
     (license license:gpl3+)))
 
-(define-public doxygen-1.14
-  (package
-    (inherit doxygen-1.16)
-    (name "doxygen")
-    (version "1.14.0")
-    (home-page "https://www.doxygen.nl/")
-    (source (origin
-              (method url-fetch)
-              (uri (list (string-append home-page "files/doxygen-"
-                                        version ".src.tar.gz")
-                         (string-append "mirror://sourceforge/doxygen/rel-"
-                                        version "/doxygen-" version
-                                        ".src.tar.gz")))
-              (sha256
-               (base32
-                "0pbbdvc1zxps6mi58bry16rcrdw6b9gvf9nhv0kp60qkmc8nslyl"))))))
-
-(define-public doxygen doxygen-1.14)
-
 (define-public halibut
   (package
     (name "halibut")

gnu/packages/duckdb.scm

@@ -148,13 +148,13 @@ system.")
 (define-public r-duckdb
   (package
     (name "r-duckdb")
-    (version "1.5.2")
+    (version "1.5.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "duckdb" version))
        (sha256
-        (base32 "1dldlfwvc33czvlxfmwaj4p9y6sjjj5iqy98yda47a8kclrqmyam"))
+        (base32 "177621m08whqqk4yhj3zrr08l3d9hhlqh3gm9jzhi5cplg47cksq"))
        ;; This package bundles the duckdb sources and builds a custom variant
        ;; of duckdb.  I'd be happy to link it with our duckdb library instead,
        ;; but it does not seem possible to do that.

gnu/packages/ebook.scm

@@ -415,43 +415,6 @@ e-books for convenient reading.")
 accessing and converting various ebook file formats.")
     (license license:expat)))
 
-(define-public epub-thumbnailer
-  ;; See: <https://github.com/marianosimone/epub-thumbnailer/issues/46>.
-  (let ((commit "de4b5bf0fcd1817d560f180231f7bd22d330f1be")
-        (revision "0"))
-    (package
-      (name "epub-thumbnailer")
-      (version (git-version "0.0.0" revision commit))
-      (home-page "https://github.com/marianosimone/epub-thumbnailer")
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url home-page)
-                (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "1bkknrcds67qkgci6kdkv51fz8hzmqg8z1vkkni4jl4vgix7cjxg"))))
-      (build-system pyproject-build-system)
-      (arguments
-       (list
-        #:tests? #f     ;no tests provided
-        #:phases
-        #~(modify-phases %standard-phases
-            (add-after 'strip 'rename-program
-              (lambda _
-                (with-directory-excursion #$output
-                  (rename-file "bin/epub-thumbnailer.py"
-                               "bin/epub-thumbnailer")))))))
-      (propagated-inputs (list python-pillow))
-      (native-inputs (list python-setuptools))
-      (synopsis
-       "Extract the cover of an epub book and create a thumbnail for it")
-      (description
-       "@code{epub-thumbnailer} is a simple script that tries to find a cover
-into an epub file and creates a thumbnail for it.")
-      (license license:gpl3))))
-
 (define-public inkbox
   (package
     (name "inkbox")

gnu/packages/education.scm

@@ -4,7 +4,7 @@
 ;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com>
 ;;; Copyright © 2017-2023 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr>
-;;; Copyright © 2018-2026 Nicolas Goaziou <mail@nicolasgoaziou.fr>
+;;; Copyright © 2018-2025 Nicolas Goaziou <mail@nicolasgoaziou.fr>
 ;;; Copyright © 2020 Robert Smith <robertsmith@posteo.net>
 ;;; Copyright © 2020 Guy Fleury Iteriteka <gfleury@disroot.org>
 ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
@@ -385,7 +385,7 @@ not have any other specialized device.")
 (define-public openboard
   (package
     (name "openboard")
-    (version "1.7.7")
+    (version "1.7.3")
     (source
      (origin
        (method git-fetch)
@@ -394,7 +394,7 @@ not have any other specialized device.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1i27h84p77pl1chw791fjs3vyzsjvsqc9ky2mbw7g8xpzxz1nd9j"))))
+        (base32 "1098pys5p82sx97xrhw54vlkn6jly0rhq8b09grmmx2h4mcpj2i2"))))
     (build-system qt-build-system)
     (arguments
      (list

gnu/packages/efi.scm

@@ -204,3 +204,48 @@ and EFI variable management.")
     ;; Library routines (in lib/) are under LGPL 2.1.
     ;; Compiling/linking/using OpenSSL is permitted.
     (license (list license:gpl2 license:lgpl2.1))))
+
+(define-public efilinux
+  (package
+    (name "efilinux")
+    (version "1.1")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/mfleming/efilinux")
+                    (commit (string-append "efilinux-" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "0b4nxzr3wl5v4b52r79iw1arfgasz26xb38r2blw9v2qz2s1q9w2"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:make-flags
+       (list "CC=gcc"
+             ,@(match (%current-system)
+                 ("aarch64-linux"
+                  '("ARCH=aarch64"))
+                 ("armhf-linux"
+                  '("ARCH=arm"))
+                 (_ '()))
+             (string-append "INCDIR=" (assoc-ref %build-inputs "gnu-efi")
+                            "/include")
+             (string-append "LIBDIR=" (assoc-ref %build-inputs "gnu-efi")
+                            "/lib"))
+       #:tests? #f ; No tests exist.
+       #:phases
+       (modify-phases %standard-phases
+         (delete 'configure)
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (install-file "efilinux.efi"
+                           (string-append (assoc-ref outputs "out")
+                                          "/libexec"))
+             #t)))))
+    (inputs
+     (list gnu-efi))
+    (synopsis "Minimal Linux loader for UEFI")
+    (description "This package provides a minimal Linux loader as an UEFI
+program.")
+    (home-page "https://github.com/mfleming/efilinux")
+    (license license:bsd-2)))

gnu/packages/electronics.scm

@@ -105,13 +105,11 @@
   #:use-module (gnu packages gnome)
   #:use-module (gnu packages gperf)
   #:use-module (gnu packages graph)
-  #:use-module (gnu packages graphics)
   #:use-module (gnu packages graphviz)
   #:use-module (gnu packages groff)
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages guile)
   #:use-module (gnu packages image)
-  #:use-module (gnu packages image-processing)
   #:use-module (gnu packages java)
   #:use-module (gnu packages libedit)
   #:use-module (gnu packages libffi)
@@ -242,8 +240,8 @@ are also taken from the original.")
       (license license:gpl3+))))
 
 (define-public abc
-  (let ((commit "7bf1177d3900212df9e5c32ffc3ff2f59bc9b02b")
-        (revision "11"))
+  (let ((commit "c18b9a24de46d3b0209afa416511b7a1127344f9")
+        (revision "9"))
     (package
       (name "abc")
       (version (git-version "0.0" revision commit))
@@ -255,7 +253,7 @@ are also taken from the original.")
                 (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "1zyip7x3av03mp766m60md2a8g8xp4divpgxj6n4760i753i9b85"))))
+                  "12fjhlr9r34l6kw2jyaalh53fs783r1h2zx0ldzaxxrbcslb0bxh"))))
       (build-system gnu-build-system)
       (inputs
        (list readline))
@@ -280,7 +278,7 @@ formal verification.")
   (package
     (inherit abc)
     (name "abc-yosyshq")
-    (version "0.65")
+    (version "0.63")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -289,57 +287,16 @@ formal verification.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "11viizz5kxh93a56fqxq0ma4945whzlfagw5bb61aw2jlyqym9ka"))))
+                "1nwj4zhjqjgvb7fh877j51kfccwzrc591ag25qm9jirycgq1cqx6"))))
     (home-page "https://github.com/YosysHQ/abc/")
     (description "ABC is a program for sequential logic synthesis and
 formal verification.  This is the Yosyshq fork of ABC.")
     (license (license:non-copyleft "file:///copyright.txt"))))
 
-(define-public appcsxcad
-  (package
-    (name "appcsxcad")
-    (version "0.2.3")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/thliebig/AppCSXCAD")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "145awcsg4vl2xmrh5yf9fcasmghrai3x6ivgdxmrm1w3v9gyaccf"))))
-    (build-system qt-build-system)
-    (arguments
-     (list
-      #:qtbase qtbase ;for Qt 6
-      #:tests? #f)) ;No tests.
-    (inputs (list boost
-                  cgal
-                  csxcad
-                  eigen
-                  expat
-                  freetype
-                  gmp
-                  hdf5
-                  libjpeg-turbo
-                  libpng
-                  libtiff
-                  lz4
-                  openmpi
-                  qcsxcad
-                  tinyxml
-                  vtk))
-    (home-page "https://github.com/thliebig/AppCSXCAD")
-    (synopsis "Minimal GUI application for the @code{qcsxcad} library")
-    (description
-     "A minimal application for the @code{qcsxcad} library which is used to
-    describe geometrical objects and their physical and non-physical properties.")
-    (license license:gpl3)))
-
 (define-public apycula
   (package
     (name "apycula")
-    (version "0.32")
+    (version "0.31")
     ;; The pypi tar.gz file includes the necessary .pickle files, not available
     ;; in the home-page repository.
     (source
@@ -347,7 +304,7 @@ formal verification.  This is the Yosyshq fork of ABC.")
        (method url-fetch)
        (uri (pypi-uri "apycula" version))
        (sha256
-        (base32 "0zz6mz1s7razbqsysaji7qwfsjj19av4mg7zclxaigz4hmq9ar0d"))))
+        (base32 "0pf43cd071kv5ann78hl5qrcj9vhndr46ds2g12sgnfjfvh6pfpg"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:tests? #f ;requires Gowin EDA tools
@@ -447,7 +404,7 @@ standard-cells.  It is compatible with @code{ngspice} and @code{Xyce}.")
 (define-public ciel
   (package
     (name "ciel")
-    (version "2.4.1")
+    (version "2.4.0")
     (source
      (origin
        (method git-fetch)
@@ -456,7 +413,7 @@ standard-cells.  It is compatible with @code{ngspice} and @code{Xyce}.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "08r30ighn86995dcf7278k9nrci8wbp6kglgk011y6g80z9m2zm7"))))
+        (base32 "0cj4cpmpqi7aqj9jkpp87qs9bjcg3j97adv1s91pnfrkplff8rh1"))))
     (arguments
      (list
       #:tests? #f ;no tests
@@ -486,62 +443,6 @@ standard-cells.  It is compatible with @code{ngspice} and @code{Xyce}.")
 chip design and @acronym{EDA, Electronic Design Automation}.")
     (license license:asl2.0)))
 
-(define-public csxcad
-  (package
-    (name "csxcad")
-    (version "0.6.3")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/thliebig/CSXCAD")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1c383zsv4fp40kmpawamfi9zg3b8x3d4m091ldwk15mii3467hp3"))))
-    (build-system cmake-build-system)
-    (arguments
-     (list
-      #:tests? #f ; No tests.
-      #:configure-flags
-      #~(list
-         (string-append "-DFPARSER_ROOT_DIR=" #$(this-package-input "fparser")))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'fix-cmake-and-sources
-            (lambda _
-              (substitute* "CMakeLists.txt"
-                (("  system\n")
-                 "")
-                (("find_package\\(HDF5 1.8 COMPONENTS C HL REQUIRED\\)")
-                 "find_package(HDF5 REQUIRED COMPONENTS C HL)"))
-              ;; Fix missing `std::`.
-              ;; This is fixed in upstream already but not tagged.
-              (substitute* "src/CSPropDiscMaterial.cpp"
-                (("\tcout ")
-                 "\tstd::cout ")))))))
-    (inputs (list boost
-                  cgal
-                  eigen
-                  fparser
-                  hdf5
-                  gmp
-                  libjpeg-turbo
-                  libpng
-                  libtiff
-                  lz4
-                  mpfr
-                  openmpi
-                  tinyxml
-                  vtk
-                  zlib))
-    (home-page "https://github.com/thliebig/CSXCAD")
-    (synopsis "3D geometry library for C++")
-    (description
-     "@code{csxcad} is a C++ library to describe geometrical objects
-and their physical or non-physical properties for electromagnetics simulations.")
-    (license license:lgpl3+)))
-
 (define-public comedilib
   (package
     (name "comedilib")
@@ -566,7 +467,7 @@ individual low-level driver modules.")
 (define-public eqy
   (package
     (name "eqy")
-    (version "0.65")
+    (version "0.63")
     (source
      (origin
        (method git-fetch)
@@ -575,7 +476,7 @@ individual low-level driver modules.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1lsf8wm10wq67lmwz1ck30inl3byfy27ya39fj93gym5ys815ma6"))))
+        (base32 "05rk6gy0xnaksxqdkpm08i3ngh0adavfyfjyscw5l1b7d7yhfavh"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -1016,7 +917,7 @@ files.")
 (define-public klayout
   (package
     (name "klayout")
-    (version "0.30.8")
+    (version "0.30.7")
     (source
      (origin (method git-fetch)
              (uri (git-reference
@@ -1025,7 +926,7 @@ files.")
              (file-name (git-file-name name version))
              (sha256
               (base32
-               "0aw0y5k27pslql9pir6nplapj6ml6fkhzd815s13rlnw3bm0fcs6"))))
+               "0xyrn9vhx871vm141hgsb9qrdim51vfk2mw8hcqyam1ixkbz5jjv"))))
     (build-system copy-build-system)
     (arguments
      (list
@@ -1168,7 +1069,7 @@ characterization result in a liberty library file.")
 (define-public kicad
   (package
     (name "kicad")
-    (version "10.0.3")
+    (version "10.0.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1176,7 +1077,7 @@ characterization result in a liberty library file.")
                     (commit version)))
               (sha256
                (base32
-                "0ldaj072x16452xw2wszbk20g932rz36zappjrxc4m6ygx298aa3"))
+                "1470x1276yvd8li3w25zjg73fkpl2qp4dsx7adanafq5c4l47rmc"))
               (file-name (git-file-name name version))))
     (build-system cmake-build-system)
     (arguments
@@ -1284,9 +1185,7 @@ characterization result in a liberty library file.")
      "Kicad is a program for the formation of printed circuit
 boards and electrical circuits.  The software has a number of programs that
 perform specific functions, for example, pcbnew (Editing PCB), eeschema (editing
-electrical diagrams), gerbview (viewing Gerber files) and others.  To use
-SQLite-backed database libraries, install the optional @code{sqliteodbc}
-package.")
+electrical diagrams), gerbview (viewing Gerber files) and others.")
     (license license:gpl3+)))
 
 (define-public kicad-doc
@@ -1301,7 +1200,7 @@ package.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1532y6whn1bcwjb417qlga1hibgpfqs594l9zs4c8f5ymaqb8s1b"))))
+                "1k0ayxsy0nnv9qxkii9yrxs7jx9y3wfjpsv5yl9wql3vdg3qay69"))))
     (build-system cmake-build-system)
     (arguments
      `(#:configure-flags (list "-DBUILD_FORMATS=html"
@@ -1333,7 +1232,7 @@ package.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "05h8dbygch2kp4s5ikspxngwv999j7jwsiwm4pzwwcrir7dqzdfl"))))
+                "0khfnln0f2zsz5hy31nw2rr0nflb2z3s9n9f7g41g03m9l3s43v2"))))
     (build-system cmake-build-system)
     (native-inputs (list python-wrapper))
     (arguments
@@ -1363,7 +1262,7 @@ libraries.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0wdzsn7z11wc5yskk576a4a6qfagsvw0y6r034inxrnfc32aiah9"))))
+                "0ymmd1rzrczpvcqzw1mld9x8xhbka0vvjy3kdqwysg4ri97f5wrm"))))
     (synopsis "Official KiCad footprint libraries")
     (description "This package contains the official KiCad footprint libraries.")))
 
@@ -1380,7 +1279,7 @@ libraries.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "01nbjcs3890hyfmafc623ldmfi9n8sjr5m0wripz5fq5fjdnzqxl"))))
+                "0k91iw661fpzb7saryjxdcdvk1kis7dhbcpzp7xzjk84i4jvxrp5"))))
     (synopsis "Official KiCad 3D model libraries")
     (description "This package contains the official KiCad 3D model libraries.")))
 
@@ -1402,60 +1301,6 @@ libraries.")
     (description "This package contains the official KiCad project and
 worksheet templates.")))
 
-(define-public kicad-cern-libraries
-  ;; Upstream does not tag releases.
-  (let ((commit "980670fefdf71965aae6c56194d7f2a68c3e6a68")
-        (revision "0"))
-    (package
-      (name "kicad-cern-libraries")
-      (version (git-version "0" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url "https://gitlab.com/ohwr/cern-kicad-libs.git")
-                (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "0lr1p28gknbgsr86hbzh87plagcyc040v6141xmha280n78h2l62"))))
-      (build-system copy-build-system)
-      (arguments
-       (list
-        #:install-plan
-        #~'(("SchLib" "share/kicad/cern/")
-            ("PcbLib" "share/kicad/cern/")
-            ("CERN.sqlite" "share/kicad/cern/")
-            ("CERN_Linux.kicad_dbl" "share/kicad/cern/")
-            ("fp-lib-table" "share/kicad/cern/")
-            ("sym-lib-table" "share/kicad/cern/")
-            ("README.md" "share/doc/kicad-cern-libraries/")
-            ("LICENSE" "share/doc/kicad-cern-libraries/")
-            ("LICENSES" "share/doc/kicad-cern-libraries/")
-            ("CHECKSUMS" "share/doc/kicad-cern-libraries/")
-            ("pcblib_conversion_log.txt" "share/doc/kicad-cern-libraries/")
-            ("schlib_conversion_log.txt" "share/doc/kicad-cern-libraries/"))
-        #:phases
-        #~(modify-phases %standard-phases
-            (add-after 'unpack 'adapt-library-tables
-              (lambda _
-                (substitute* "sym-lib-table"
-                  (("\\$\\{KICAD9_SYMBOL_DIR\\}")
-                   "${KICAD10_SYMBOL_DIR}")))))))
-      (propagated-inputs (list sqliteodbc))
-      (native-search-paths
-       (list (search-path-specification
-              (variable "CERN_LIB_DIR")
-              (files '("share/kicad/cern"))
-              (separator #f))))
-      (home-page "https://gitlab.com/ohwr/cern-kicad-libs")
-      (synopsis "CERN component libraries for KiCad")
-      (description
-       "This package provides CERN's KiCad component libraries, including
-schematic symbols, footprints, a SQLite-backed database library, and KiCad
-library tables.  The libraries are generated from CERN's Altium Designer
-libraries.")
-      (license license:ohl2-p))))
-
 (define-public lepton-eda
   (package
     (name "lepton-eda")
@@ -1657,7 +1502,7 @@ an embedded event driven algorithm.")
 (define-public librelane
   (package
     (name "librelane")
-    (version "3.0.3")
+    (version "3.0.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1666,7 +1511,7 @@ an embedded event driven algorithm.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0g4b5kby7zp8v59xzxmfxh3a2yqvmmsb1wsmasl3cz1aibk343a8"))))
+                "01zi2v5qi26h09hwjafsq9k0anrc5g5fc6q5vg87k9lcwyfsi685"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -1923,31 +1768,6 @@ management with library, schematic and board editors.")
       (license (list license:expat      ;libfst and fastlz-derived sources
                      license:bsd-2))))) ;for lz4-derived sources
 
-(define-public python-csxcad
-  (package
-    (inherit csxcad)
-    (name "python-csxcad")
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      ;; Tests are broken in v0.6.3.
-      ;; Check on update.
-      #:tests? #f
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-before 'build 'prepare-build
-            (lambda _
-              (chdir "./python")
-              (setenv "CSXCAD_INSTALL_PATH"
-                      #$(this-package-input "csxcad")))))))
-    (native-inputs (list python-minimal python-cython python-numpy
-                         python-setuptools))
-    (inputs (list csxcad fparser hdf5 python-numpy tinyxml))
-    (synopsis "Python bindings for @code{csxcad}")
-    (description "Library for describing geometrical objects and their
-physical and non-physical properties.")
-    (license license:lgpl3+)))
-
 (define-public python-lln-libparse
   (package
     (name "python-lln-libparse")
@@ -2198,7 +2018,7 @@ which allows one to install the M8 firmware on any Teensy.")
 (define-public magic
   (package
     (name "magic")
-    (version "8.3.644")
+    (version "8.3.625")
     (source
      (origin
        (method git-fetch)
@@ -2207,7 +2027,7 @@ which allows one to install the M8 firmware on any Teensy.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0qp1alm4pczfm77r8lxwgzrwh02ihvfmk9sbwjlfbrixg1dn85xb"))))
+        (base32 "0ld238cdq8mzzcx7vgk67aqim0ypbfyks486z59q19yzxpr6c42s"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -2237,7 +2057,7 @@ versus schematic} tests and can assist with automatic routing.")
 (define-public mcy
   (package
     (name "mcy")
-    (version "0.65")
+    (version "0.63")
     (source
      (origin
        (method git-fetch)
@@ -2300,7 +2120,7 @@ coverage.")
 (define-public netgen
   (package
     (name "netgen")
-    (version "1.5.319")
+    (version "1.5.316")
     (source
      (origin
        (method git-fetch)
@@ -2309,7 +2129,7 @@ coverage.")
              (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "16xd2xcsny1bb6yk4lz34jfpwfb5xi2i9izxjymmalnzhg32i9cz"))))
+        (base32 "1923mynqw1wjhlcij639gdqrkifyb5lcks1x11gwpgp4gijwj3qb"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -2509,7 +2329,7 @@ Automation}, portable and vendor neutral FPGA place and route tool.")
 (define-public nvc
   (package
     (name "nvc")
-    (version "1.20.1")
+    (version "1.19.3")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -2518,7 +2338,7 @@ Automation}, portable and vendor neutral FPGA place and route tool.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1b38x2ch468s4p6mrq6c8s0d95vb84p6w4v8in79l4w7sfy8jnr0"))))
+                "1zizz2dafm53lzpjayy6vig5pz5ri9cszdivg0jzzh8s3ggkpy1i"))))
     (build-system gnu-build-system)
     (arguments
      (list #:out-of-source? #t
@@ -2657,66 +2477,6 @@ such as:
 @end itemize")
     (license license:expat)))
 
-(define-public openems
-  (package
-    (name "openems")
-    (version "0.0.36")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/thliebig/openEMS")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "1vxlknnji7kha0kabpjqh48i4r0rqlla9gcxhn69d0gcw76albmw"))))
-    (build-system cmake-build-system)
-    (arguments
-     (list
-      #:configure-flags
-      #~(list (string-append "-DCSXCAD_ROOT_DIR="
-                             #$(this-package-input "csxcad"))
-              (string-append "-DFPARSER_ROOT_DIR="
-                             #$(this-package-input "fparser")))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'fix-cmake
-            (lambda _
-              (substitute* "CMakeLists.txt"
-                (("  system\n") "")
-                (("find_package\\(HDF5 1.8 COMPONENTS C HL REQUIRED\\)")
-                 "find_package(HDF5 1.8 REQUIRED)"))))
-          (delete 'check)
-          (add-after 'install 'check
-            (lambda* (#:key tests? source inputs #:allow-other-keys)
-              (when tests?
-                (let* ((testsuite (string-append source "/TESTSUITE"))
-                       (testsuite-tmp "/tmp/openEMS-TESTSUITE"))
-                  ;; Testsuite directory needs to be writable.
-                  (copy-recursively testsuite testsuite-tmp)
-                  (invoke "octave" "--no-gui" "--eval"
-                          (string-append
-                            "addpath('" #$output "/share/openEMS/matlab');"
-                            "addpath('"
-                            (search-input-directory inputs "share/CSXCAD/matlab")
-                            "');"
-                            ;; Work around bug in test script.
-                            "addpath('" testsuite-tmp "/helperscripts');"
-                            "run('" testsuite-tmp "/run_testsuite.m');")))))))))
-    (native-inputs (list cmake-minimal octave pkg-config))
-    (inputs (list boost
-                  csxcad
-                  fparser
-                  hdf5
-                  openmpi
-                  tinyxml
-                  vtk))
-    (home-page "https://www.openems.de")
-    (synopsis "Electromagnetic field solver")
-    (description "@code{OpenEMS} is an electromagnetic field solver using
-the @acronym{FDTD, Finite-Difference Time-Domain} method.")
-    (license license:gpl3+)))
-
 (define-public pcb-rnd
   (package
     (name "pcb-rnd")
@@ -2930,20 +2690,20 @@ formats.")
 (define-public openroad
   (package
     (name "openroad")
-    (version "26Q2")
+    (version "26Q1")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
               (url "https://github.com/The-OpenROAD-Project/OpenROAD")
-              (commit version)
+              (commit "e06ca0f5f2e641cd7b138a4d9b4fdd290359eca8")
               ;; 26Q1 Uses:
-              ;; - forked, custom opensta: v2.2.0-1952-g43177bba
-              ;; - forked, custom (berkeley) abc: 20260301.0445-g17cadca08
+              ;; - forked, custom opensta: v2.2.0-1579-g9c9b5659
+              ;; - forked, custom (berkeley) abc: 20260104.1628-g4c756ffb8
               (recursive? #t)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "152j78c47wyq4sw42bwlxdhvs5g47a8jqz1qz5yzdsk9z5y4y7vl"))))
+        (base32 "13x4kqi4j489k4sz56ws4aqhp60nff1i18z6hjd6xx8y7flaik0c"))))
     (build-system qt-build-system)
     (arguments
      (list
@@ -2977,7 +2737,7 @@ formats.")
            flex
            googletest
            pkg-config
-           swig-4.4))
+           swig-4.0))
     (inputs
      (list abseil-cpp
            boost
@@ -3016,6 +2776,7 @@ clock tree synthesis, routing, parasitic extraction, and timing analysis.")
   (package
     (inherit openroad)
     (name "openroad-cli")
+    (build-system cmake-build-system)
     (arguments
      (delkw
       #:qtbase
@@ -3520,44 +3281,6 @@ integrated circuit Hardware Description Language} and SystemVerilog
 parser library for Python.")
     (license license:expat)))
 
-(define-public python-openems
-  (package
-    (inherit openems)
-    (name "python-openems")
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:tests? #f ; No tests.  Check again on package upgrade.
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'fix-sources
-            ;; Check if this is still needed on upgrade.
-            (lambda _
-              (substitute* "python/openEMS/_nf2ff.pxd"
-                (("cimport cython.numeric")
-                 "import cython
-from cython cimport numeric"))))
-          (add-before 'build 'prepare-build
-            (lambda* _
-              (chdir "./python")
-              (setenv "CSXCAD_INSTALL_PATH"
-                      #$(this-package-input "csxcad"))
-              (setenv "OPENEMS_INSTALL_PATH"
-                      #$(this-package-input "openems")))))))
-    (native-inputs (list python-cython python-setuptools))
-    (inputs (list csxcad
-                  fparser
-                  openems
-                  python-csxcad
-                  python-hdf5storage
-                  python-numpy
-                  tinyxml))
-    (home-page "https://www.openems.de")
-    (synopsis "Python API for the electromagnetic field solver @code{OpenEMS}")
-    (description "@code{OpenEMS} is an electromagnetic field solver using
-the @acronym{FDTD, Finite-Difference Time-Domain} method.")
-    (license license:gpl3+)))
-
 (define-public python-pyucis
   (package
     (name "python-pyucis")
@@ -3737,7 +3460,7 @@ form of AXI, AXI lite, and AXI stream modules.")
 (define-public python-edalize
   (package
     (name "python-edalize")
-    (version "0.6.8")
+    (version "0.6.5")
     (source
      (origin
        (method git-fetch)
@@ -3746,7 +3469,7 @@ form of AXI, AXI lite, and AXI stream modules.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "04m2lhkclw9fj92k43c06j003qnq9i1yhy2131fvcnkkr0d9438m"))))
+        (base32 "1drmc126a12zlynx8ps9iwghaqs058pqj2xpdysxnrj26hg3sp15"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -3773,23 +3496,23 @@ form of AXI, AXI lite, and AXI stream modules.")
     (native-inputs
      (list python-pytest python-setuptools python-setuptools-scm))
     (propagated-inputs
-     (list python-importlib-metadata python-jinja2 python-pandas))
+     (list python-importlib-metadata python-jinja2))
     (home-page "https://github.com/olofk/edalize/")
     (synopsis "Python Library for interacting with EDA tools")
     (description
-     "This package can create project files for supported tools and run them in
-batch or GUI mode.  All EDA tools such as Icarus, Yosys, ModelSim, Vivado,
-Verilator, GHDL, Quartus etc get input HDL files (Verilog and VHDL) and some
-tool-specific files (constraint files,memory initialization files, IP
-description files etc).  Together with the files, perhaps a couple of Verilog
-`defines, some top-level parameters/generics or some tool-specific options are
-set.")
+     "This package implements a functionality to create project files for
+supported tools and run them in batch or GUI mode.  All EDA tools such as
+Icarus, Yosys, ModelSim, Vivado, Verilator, GHDL, Quartus etc get input HDL
+files (Verilog and VHDL) and some tool-specific files (constraint files,memory
+initialization files, IP description files etc).  Together with the files,
+perhaps a couple of Verilog `defines, some top-level parameters/generics or
+some tool-specific options are set.")
     (license license:bsd-2)))
 
 (define-public fusesoc
   (package
     (name "fusesoc")
-    (version "2.4.6")
+    (version "2.4.5")
     (source
      (origin
        (method git-fetch)
@@ -3798,7 +3521,7 @@ set.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "11bmvk10mszv65ws84jmm220ivwn55v8664kkdm9d4m99pryi2kp"))))
+        (base32 "1sw0zl6hjlzp1a0agdl9yp901pih70ppzzss18l8f3jxs6q7jm1n"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -4067,40 +3790,10 @@ design.")
 to enforce it.")
     (license license:gpl3+)))
 
-(define-public python-pyxhdl
-  (package
-    (name "python-pyxhdl")
-    (version "0.53")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/davidel/pyxhdl")
-              (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "16dqqhbg5q6fxlhnfcjimxv1zgziw5g46askjhfg8g2hn7i3vfal"))))
-    (build-system pyproject-build-system)
-    (arguments
-     (list
-      #:test-backend #~'custom
-      #:test-flags #~(list "tests/test_runner.py")))
-    (native-inputs
-     (list python-setuptools))
-    (propagated-inputs
-     (list python-numpy python-misc-utils))
-    (home-page "https://github.com/davidel/pyxhdl")
-    (synopsis
-     "Python frontend for @acronym{HDL, Hardware Description Languages}")
-    (description
-     "PyXHDL replaces HDL code by Python, generating VHDL (>= 2008) and
-Verilog (SystemVerilog >= 2012) code to be used for synthesis and simulation.")
-    (license license:asl2.0)))
-
 (define-public python-vunit
   (package
     (name "python-vunit")
-    (version "5.0.0-dev.10") ;v4.7.0 dates back from 2 years ago.
+    (version "5.0.0-dev.9") ;v4.7.0 dates back from 2 years ago.
     (source
      (origin
        (method git-fetch)
@@ -4109,7 +3802,7 @@ Verilog (SystemVerilog >= 2012) code to be used for synthesis and simulation.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1gr9ghwgqly9zf0sf15ai20sac520rs84b9i5qjxdqpj26ayyl1q"))))
+        (base32 "1j9rvlshzi4mdy7wah1j8ri63drkjb47xly22q40wvl2xp2ghqgs"))))
     (build-system pyproject-build-system)
     (arguments
      (list
@@ -4185,71 +3878,6 @@ automated testing of HDL code.")
     ;; subdirectories are under ASL.
     (license (list license:mpl2.0 license:asl2.0))))
 
-(define-public qcsxcad
-  (package
-    (name "qcsxcad")
-    (version "0.6.3")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-             (url "https://github.com/thliebig/QCSXCAD")
-             (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "0ag1shyhsmfsvqm35fi2kfnbcngmln8rjsv88f97gyx9wiqc808y"))))
-    (build-system qt-build-system)
-    (arguments
-     (list
-      #:tests? #f ;No tests.
-      #:qtbase qtbase ;For Qt 6
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'fix-sources
-            ;; Fix missing `std::`-prefix and missing include.
-            ;; This is fixed in upstream but not tagged with a version.
-            (lambda _
-              (substitute* "vtkInteractorStyleRubberBand2DPlane.cpp"
-                (("#include \"vtkCamera.h\"")
-                 "#include <iostream>\n#include \"vtkCamera.h\"")
-                (("\tcerr ")
-                 "\tstd::cerr "))
-              (substitute* "VTKPrimitives.cpp"
-                (("#include \"VTKPrimitives.h\"")
-                 "#include <iostream>\n#include \"VTKPrimitives.h\"")
-                (("\tcerr ")
-                 "\tstd::cerr ")
-                (("\tcout ")
-                 "\tstd::cout "))
-              (substitute* "QVTKStructure.cpp"
-                (("#include \"QVTKStructure.h\"")
-                 "#include <iostream>\n#include \"QVTKStructure.h\"")
-                (("\tcerr ")
-                 "\tstd::cerr ")
-                (("\tcout ")
-                 "\tstd::cout ")))))))
-    (inputs (list boost
-                  cgal
-                  csxcad
-                  eigen
-                  freetype
-                  gmp
-                  libjpeg-turbo
-                  libpng
-                  libtiff
-                  lz4
-                  openmpi
-                  qt5compat
-                  tinyxml
-                  vtk))
-    (home-page "https://github.com/thliebig/QCSXCAD")
-    (synopsis "GUI library for @code{csxcad}")
-    (description
-     "GUI library for @code{csxcad} --- a library for describing geometrical
-    objects and their properties.  This library is used in @code{appcsxcad}
-    which provides a standalone graphical frontend to @{csxcad}.")
-    (license license:lgpl3+)))
-
 (define-public qrouter
   (package
     (name "qrouter")
@@ -4372,7 +4000,7 @@ input and outputs an XML dataset.")
 (define-public qucs-s
   (package
     (name "qucs-s")
-    (version "26.1.0")                  ;update qucsator-rf accordingly
+    (version "25.2.0")                  ;update qucsator-rf accordingly
     (source
      (origin
        (method git-fetch)
@@ -4382,7 +4010,7 @@ input and outputs an XML dataset.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "0aiyrcrxln4v6qm2dmigb54wl0mj499q3g18pz87m1s2lfgicpb1"))))
+         "0328irynm8vy4xjdip5286fd8nag1zdp0p6rcbhdhp4fca6wp5ak"))))
     (build-system qt-build-system)
     (arguments
      (list
@@ -4604,7 +4232,7 @@ them usable as simple logic analyzer and/or oscilloscope hardware.")
 (define-public sby
   (package
     (name "sby")
-    (version "0.65")
+    (version "0.63")
     (source
      (origin
        (method git-fetch)
@@ -4613,7 +4241,7 @@ them usable as simple logic analyzer and/or oscilloscope hardware.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "19cvbvg6jjh7lj1sd7jz7yd5wrlswg6dmyajc7kxgl7dd97ivpwy"))))
+        (base32 "1p23w9jd95b86n7f94zpqdaz19fn2b2lyww1p8dcy9p3zrcn7750"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -4662,8 +4290,8 @@ front-end program for Yosys-based formal hardware verification flows.")
     (license license:isc)))
 
 (define-public sby-gui
-  (let ((commit "0a89301bf347c9f42932186e49ba2c0014ff3661")
-        (revision "1"))
+  (let ((commit "6c977084c17c4842c504829c6d455a07d67e119c")
+        (revision "0"))
     (package
       (name "sby-gui")
       (version (git-version "0" revision commit))
@@ -4675,13 +4303,10 @@ front-end program for Yosys-based formal hardware verification flows.")
                 (commit commit)))
          (file-name (git-file-name name version))
          (sha256
-          (base32 "1zp2c7zqclsfvl5xhb8zlc1dclp2s36w2nd0x80fazsxp7ksw5gr"))))
+          (base32 "137x3s5mwbzlcv2p6671ijvbafzwhxpvszzfi9wifq0wcli6cxxg"))))
       (build-system qt-build-system)
       (arguments
-       (list
-        #:qtbase qtbase                 ;for Qt 6
-        #:tests? #f))                   ;no tests
-      (native-inputs (list python-minimal-wrapper))
+       (list #:tests? #f))               ;no tests
       (propagated-inputs (list sby))
       (home-page "https://github.com/YosysHQ/sby-gui/")
       (synopsis "Graphical user interface for code{sby}")
@@ -4887,7 +4512,7 @@ unique design feature of Trilinos is its focus on packages.")
 (define-public verilator
   (package
     (name "verilator")
-    (version "5.048")
+    (version "5.046")
     (source
      (origin
        (method git-fetch)
@@ -4896,7 +4521,7 @@ unique design feature of Trilinos is its focus on packages.")
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "16c1x66kqmc5ldqjij81kypj471fibfihcqn6kz4wbxvnn0smyn6"))))
+        (base32 "1gr1qhxvl4856hnmnx46dqd2qp0jhdh959zm2qfmxzzh19np7xkm"))))
     (native-inputs
      (list autoconf
            automake
@@ -5036,7 +4661,7 @@ parallel computing platforms.  It also supports serial execution.")
 (define-public yosys
   (package
     (name "yosys")
-    (version "0.65")
+    (version "0.63")
     (source
      (origin
        (method git-fetch)
@@ -5044,16 +4669,15 @@ parallel computing platforms.  It also supports serial execution.")
               (url "https://github.com/YosysHQ/yosys")
               (commit (string-append "v" version))))
        (sha256
-        (base32 "04sks9hj8h9vy6zii29zjgq38h2h4nz8a7xxiq33p1aivwq7bz8q"))
+        (base32 "1iaafzsc0pbd61m5hh12nzr2z4rn4n7i68l6ij9vli4m5zsxw39k"))
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (outputs '("out" "doc"))
     (arguments
      (list
-      #:test-target "all"
+      #:test-target "vanilla-test"  ;TODO: restore to "test" with next release
       #:make-flags
       #~(list (string-append "PREFIX=" #$output)
-              "ENABLE_FUNCTIONAL_TESTS=1"
               "ENABLE_EDITLINE=1"
               "ENABLE_LIBYOSYS=1"
               "ENABLE_PYOSYS=1"
@@ -5068,11 +4692,6 @@ parallel computing platforms.  It also supports serial execution.")
                       #$(this-package-input "abc-yosyshq")))
       #:phases
       #~(modify-phases %standard-phases
-          ;; TODO: Remove when fixed.
-          (add-after 'unpack 'remove-aiger
-            (lambda _
-              (substitute* "tests/Makefile"
-                ((".*aiger.*") ""))))
           (add-before 'configure 'fix-paths
             (lambda* (#:key inputs #:allow-other-keys)
               (substitute* "backends/smt2/smtio.py"
@@ -5163,12 +4782,12 @@ parallel computing platforms.  It also supports serial execution.")
               (git-reference
                 (url "https://github.com/povik/yosys-slang")
                 ;; No tags, nor releases.
-                (commit "cf20b1ba0d2c9df0508f927930a87565e7e0d220")
+                (commit "d82b0b163a725fc1a401fbb6b465cd862517ec1f")
                 (recursive? #t)))  ;requires slang and fmt
              (file-name "yosys-slang")
              (sha256
               (base32
-               "1rl9i19a90yis33g549ida7lygfh1qka5k96zdrvk0shn2jnm8g4")))))
+               "07h4qssphggd4mbn376vldqwzj1i16y1ix455xzr4lgx6s2q9ryg")))))
     ;; Optional dependencies increase considerably package closure.
     ;; - gtkwave: required only for vcd2fst binary, used by ‘sim’ command.
     ;; - graphviz, xdot: used by ‘show’ command to display schematics.
@@ -5199,7 +4818,7 @@ for various application domains, including FPGAs and ASICs.")
               license:expat
               ;; yosys-slang/third_party/fmt
               license:bsd-2 license:bsd-3 license:psfl
-              ;; yosys, yosys-slang
+              ;; yosys
               license:isc))))
 
 (define-deprecated-package yosys-clang yosys)

gnu/packages/elixir-i18n.scm

@@ -290,7 +290,7 @@ based upon the Common Locale Data Repository (CLDR).")
   (package
     (inherit elixir-ex-cldr-minimal)
     (name "elixir-ex-cldr")
-    (version "2.47.2")
+    (version "2.43.2")
     (source
      (origin
        ;; The hex.pm package ships only the en locale.
@@ -300,7 +300,7 @@ based upon the Common Locale Data Repository (CLDR).")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1rivy61aq0c9zfklm4bpvvkj7lzjgy316rwxl8qz92xqp6xa292y"))))
+        (base32 "1wgwp74ya0gkvd5pk4qv9s38p85r5yw370y4wv7jywy3hrbrj9f5"))))
     (arguments
      (list
       #:phases

gnu/packages/elixir-web.scm

@@ -303,17 +303,7 @@ purposes.  Its goal is to be as close as possible to
      (list
       #:test-flags
       ;; These tests require network access to badssl.com.
-      #~(list "--exclude" "network")
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'make-reproducible
-            (lambda _
-              ;; Buffer size has been increased in OTP 28+. For more info see:
-              ;; https://github.com/erlang/otp/issues/9722#issuecomment-2808683303
-              (substitute* "test/httpoison_test.exs"
-                (("stream/20") "stream/100")
-                (("<= expected_length") "<= expected_length * 1.1")
-                ((">= max_length") ">= max_length * 0.9")))))))
+      #~(list "--exclude" "network")))
     (native-inputs
      (list erlang-cowboy
            elixir-earmark

gnu/packages/elixir.scm

@@ -164,8 +164,7 @@ Mix.CLI.main()"
                        '("ERL_LIBS" prefix ("${GUIX_ELIXIR_LIBS}"))))
                    programs))))))))
     (outputs '("out" "src"))
-    (inputs (list bash-minimal erlang rebar3))
-    (native-inputs (list git-minimal))
+    (inputs (list bash-minimal erlang rebar3 git))
     (native-search-paths
      (list (search-path-specification
             (variable "GUIX_ELIXIR_LIBS")

gnu/packages/emacs-build.scm

@@ -62,7 +62,7 @@ as bold, underscore or italic.")
 (define-public emacs-buttercup
   (package
     (name "emacs-buttercup")
-    (version "1.40")
+    (version "1.38")
     (source
      (origin
        (method git-fetch)
@@ -72,7 +72,9 @@ as bold, underscore or italic.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "1b55cfh4wr40max2c42crvaa6wid7a83g28yximsin98i32q5f5r"))))
+         "09n8skr5wi8bs7x81d5bi6z89dd8s1zi9a5f4r2qadaz69slncxq"))
+       (patches
+        (search-patches "emacs-buttercup-1.38-native-comp-spy-on-trampoline-scope.patch"))))
     (build-system emacs-build-system)
     (arguments
      (list

gnu/packages/emacs.scm

@@ -28,7 +28,6 @@
 ;;; Copyright © 2025 Nicolas Graves <ngraves@ngraves.fr>
 ;;; Copyright © 2025 Jake Forster <jakecameron.forster@gmail.com>
 ;;; Copyright © 2025 John Kehayias <john@guixotic.coop>
-;;; Copyright © 2026 Daniel Littlewood <dan@danielittlewood.xyz>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -645,6 +644,32 @@ editor (console only)")
     (description "This Emacs build implements graphical UI purely in terms
 of GTK.")))
 
+(define-public emacs-xwidgets
+  (package/inherit emacs
+    (name "emacs-xwidgets")
+    (synopsis "The extensible, customizable, self-documenting text
+editor (with xwidgets support)")
+    (arguments
+     (substitute-keyword-arguments arguments
+       ((#:configure-flags flags #~'())
+        #~(cons "--with-xwidgets" #$flags))))
+    (inputs
+     (modify-inputs inputs
+       (prepend webkitgtk-with-libsoup2 libxcomposite)))))
+
+(define-public emacs-pgtk-xwidgets
+  (package
+    (inherit emacs-pgtk)
+    (name "emacs-pgtk-xwidgets")
+    (synopsis "Emacs text editor with @code{xwidgets} and @code{pgtk} support")
+    (arguments
+     (substitute-keyword-arguments arguments
+       ((#:configure-flags flags #~'())
+        #~(cons "--with-xwidgets" #$flags))))
+    (inputs
+     (modify-inputs inputs
+       (prepend gsettings-desktop-schemas webkitgtk-with-libsoup2)))))
+
 (define-public emacs-lucid
   (package/inherit emacs-no-x
     (name "emacs-lucid")
@@ -702,8 +727,8 @@ editor (with wide ints)" )
         #~(cons "--with-wide-int" #$flags))))))
 
 (define-public emacs-next-minimal
-  (let ((commit "d969185878bf50faedbafbd609c361875b891b53")
-        (revision "3"))
+  (let ((commit "509228fc6c026921c67459f21164e0325efc583b")
+        (revision "2"))
   (package
     (inherit emacs-minimal)
     (name "emacs-next-minimal")
@@ -717,7 +742,7 @@ editor (with wide ints)" )
              (commit commit)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1pmx71b6pazjpyfs1d2ngby1idsviwbap3xbr5b7dgf0rngim32s"))
+        (base32 "04aalyrx5jysk5fhlka98fhfx23sy99zp8j16i0ils20sflyig6n"))
        (patches
         (search-patches "emacs-next-disable-jit-compilation.patch"
                         "emacs-next-exec-path.patch"
@@ -749,6 +774,7 @@ editor (with wide ints)" )
 
 (define-public emacs-next (emacs->emacs-next emacs))
 (define-public emacs-next-pgtk (emacs->emacs-next emacs-pgtk))
+(define-public emacs-next-pgtk-xwidgets (emacs->emacs-next emacs-pgtk-xwidgets))
 (define-deprecated-package emacs-next-tree-sitter
   emacs-next)
 
@@ -870,7 +896,7 @@ Started in 2014 as a GSOC project, Guile-Emacs was resurrected in 2024.")
          "0vfw7z9i2s9np6nmx1d4dlsywm044rkaqarn7akffmb6bf1j6zv5"))))
     (build-system gnu-build-system)
     (native-inputs
-     (list gettext-minimal))
+     `(("gettext" ,gettext-minimal)))
     (arguments
      `(#:configure-flags
        (list (string-append "--with-charmaps="

gnu/packages/embedded.scm

@@ -65,7 +65,6 @@
   #:use-module (gnu packages libffi)
   #:use-module (gnu packages libftdi)
   #:use-module (gnu packages libusb)
-  #:use-module (gnu packages linux)
   #:use-module (gnu packages messaging)
   #:use-module (gnu packages ncurses)
   #:use-module (gnu packages perl)
@@ -1902,7 +1901,7 @@ PicoBlaze; and Zilog Z80 families, plus many of their variants.")
     (inputs
      (list readline ucsim))
     (native-inputs
-     (list bison boost flex python-minimal-wrapper texinfo zlib))
+     (list bison boost flex python-2 texinfo zlib))
     (home-page "https://sdcc.sourceforge.net/")
     (synopsis "C compiler suite for 8-bit microcontrollers")
     (description "SDCC is a retargetable, optimizing Standard C compiler suite
@@ -1920,7 +1919,7 @@ and Zilog Z80 families, plus many of their variants.")
 (define-public python-psptool
   (package
     (name "python-psptool")
-    (version "3.6")
+    (version "3.1")
     (source
      (origin
        (method git-fetch)
@@ -1929,40 +1928,36 @@ and Zilog Z80 families, plus many of their variants.")
               (commit version)))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1s53bqimh1ih0xqmyppm2ikphi8r9492k67kn4pz3jngh2gp1wnf"))))
+        (base32 "1fbx3b42cr7dv07p2b9qgzrgs19i066ysfasgvlfjscg2v68j8d0"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:test-backend #~'unittest))
     (native-inputs
-     (list python-hatch-vcs
-           python-hatchling
-           python-psptrace-bootstrap
+     (list python-psptrace-bootstrap
            python-setuptools))
     (propagated-inputs
      (list python-cryptography
            python-prettytable))
     (home-page "https://github.com/PSPReverse/psptool")
     (synopsis "Tool for dealing with AMD binary blobs")
-    (description "PSPTool is a tool for dealing with AMD binary blobs.")
+    (description "PSPTool is a tool for dealing with AMD binary blobs")
     (license license:gpl3+)))
 
 (define-public python-psptrace
   (package
     (name "python-psptrace")
-    (version "0.11")
+    (version "0.7")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "psptrace" version))
        (sha256
-        (base32 "0lzv0dy2m5g6q4rpjd4wpw0p7n8v8crkx7akbp53lpy1c6y40iw8"))))
+        (base32 "1mrympnpkkns2dxq34h9x9qn667ihdvbbf0wpmbp3jli0n7bj7ih"))))
     (build-system pyproject-build-system)
     (arguments
      (list #:tests? #f)) ;no tests in PyPI or Git
     (native-inputs
-     (list python-hatch-vcs
-           python-hatchling
-           python-setuptools))
+     (list python-setuptools))
     (propagated-inputs
      (list python-prettytable
            python-psptool))
@@ -2072,27 +2067,26 @@ operations.")
     (license license:asl2.0)))
 
 (define-public ts4900-utils
-  (package
-    (name "ts4900-utils")
-    (version "3.0.0")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/embeddedTS/ts4900-utils")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
-              (sha256
-               (base32
-                "08x40ii56v4cmnz9hk6rvjrc500k1bij5ns52360vczznc8lx8bx"))))
-    (build-system gnu-build-system)
-    (native-inputs
-     (list autoconf
-           automake
-           libgpiod
-           pkg-config))
-    (home-page "https://github.com/embeddedTS/ts4900-utils")
-    (synopsis "Utilities for the TS-4900 board family")
-    (description "This package contains utilities useful for boards of the
+  ;; There are no proper release nor tag; use the latest commit.
+  (let ((revision "0")
+        (commit "e10a12f8050d1d1229e711c7cfab8a0d5d93ee58"))
+    (package
+      (name "ts4900-utils")
+      (version (git-version "0.0.0" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/embeddedTS/ts4900-utils")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "1vr8i425qijbwgbc10av3wr35p3x11wy6y442w0ja0yny7si8wp8"))))
+      (build-system gnu-build-system)
+      (native-inputs (list autoconf automake))
+      (home-page "https://github.com/embeddedTS/ts4900-utils")
+      (synopsis "Utilities for the TS-4900 board family")
+      (description "This package contains utilities useful for boards of the
 TS-4900 family.  The included commands are:
 @itemize @code
 @item adc8390
@@ -2105,7 +2099,7 @@ TS-4900 family.  The included commands are:
 @item tsmicroupdate
 @item tssilomon
 @end itemize")
-    (license license:bsd-2)))
+      (license license:bsd-2))))
 
 (define-public cc-tool
   (package

gnu/packages/emulators.scm

@@ -6,7 +6,7 @@
 ;;; Copyright © 2015, 2018, 2023 David Thompson <dthompson2@worcester.edu>
 ;;; Copyright © 2016 Manolis Fragkiskos Ragkousis <manolis837@gmail.com>
 ;;; Copyright © 2016, 2017, 2018, 2020 Efraim Flashner <efraim@flashner.co.il>
-;;; Copyright © 2017-2024, 2026 Nicolas Goaziou <mail@nicolasgoaziou.fr>
+;;; Copyright © 2017-2024 Nicolas Goaziou <mail@nicolasgoaziou.fr>
 ;;; Copyright © 2017, 2020, 2021 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2017, 2018, 2019 Rutger Helling <rhelling@mykolab.com>
 ;;; Copyright © 2019 Pierre Neidhardt <mail@ambrevar.xyz>
@@ -148,7 +148,7 @@
 (define-public ares
   (package
     (name "ares")
-    (version "147")
+    (version "145")
     (source
      (origin
        (method git-fetch)
@@ -157,28 +157,23 @@
               (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1b4xixngp8md2ishf3cyfwpzjcsvjb5zp678can5dcmv9z1dlsis"))
-       (modules '((guix build utils)))
-       (snippet
-        ;; Delete non-free blobs: Supersoft Diagnostics II.
-        #~(delete-file-recursively "tests/i8080/tests"))))
+        (base32 "074kkgrbiga7grkwhnhw51ih7krxgf91m9zrrwjkj4q1hdjhlz5a"))))
     (build-system cmake-build-system)
     (arguments
-     (list
-      #:tests? #f                       ; non-free blobs
-      #:configure-flags
-      #~(list "-DARES_BUILD_LOCAL=FALSE"
-              "-DARES_BUILD_OFFICIAL=TRUE"
-              "-DARES_BUNDLE_SHADERS=FALSE"
-              "-DARES_SKIP_DEPS=TRUE"
-              (string-append "-DARES_VERSION_OVERRIDE=" #$version))
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'avoid-libglvnd
-            (lambda _
-              ;; TODO: Our mesa doesn't have libglvnd support.
-              (substitute* "ruby/cmake/os-linux.cmake"
-                (("OpenGL::GLX") "OpenGL::GL")))))))
+     (list #:tests? #f                  ; No tests
+           #:configure-flags
+           #~(list "-DARES_BUILD_LOCAL=FALSE"
+                   "-DARES_BUILD_OFFICIAL=TRUE"
+                   "-DARES_BUNDLE_SHADERS=FALSE"
+                   "-DARES_SKIP_DEPS=TRUE"
+                   (string-append "-DARES_VERSION_OVERRIDE=" #$version))
+           #:phases
+           #~(modify-phases %standard-phases
+               (add-after 'unpack 'avoid-libglvnd
+                 (lambda _
+                   ;; XXX: Our mesa doesn't have libglvnd support.
+                   (substitute* "ruby/cmake/os-linux.cmake"
+                     (("OpenGL::GLX") "OpenGL::GL")))))))
     (native-inputs
      (list pkg-config))
     (inputs
@@ -1269,8 +1264,7 @@ Enjoy all of your favorite Atari 2600 games on your PC thanks to Stella!")
         (base32 "1xf15b6c3i0vv92b420a92pfvfaxhji56ivin8pn5r7fajkqyfb7"))))
     (build-system gnu-build-system)
     (native-inputs
-     (cons* pkg-config which
-            (maybe-nasm)))
+     (list pkg-config nasm which))
     (inputs
      (list freetype
            glu
@@ -1295,6 +1289,8 @@ Enjoy all of your favorite Atari 2600 games on your PC thanks to Stella!")
                       (list "all" (string-append "PREFIX=" out)))
        ;; There are no tests.
        #:tests? #f))
+    ;; As per the Makefile (in projects/unix/Makefile):
+    (supported-systems '("i686-linux" "x86_64-linux"))
     (home-page "https://www.mupen64plus.org/")
     (synopsis "Nintendo 64 emulator core library")
     (description
@@ -2168,9 +2164,7 @@ as RetroArch.")
               (lambda _
                 (install-file "mupen64plus_next_libretro.so"
                               (string-append #$output "/lib/libretro/")))))))
-      (native-inputs
-       (cons* pkg-config
-              (maybe-nasm)))
+      (native-inputs (list nasm pkg-config))
       (inputs (list mesa libpng minizip unzip xxhash zlib))
       (home-page "https://github.com/libretro/mupen64plus-libretro-nx")
       (synopsis "Improved Mupen64Plus libretro core")
@@ -3253,14 +3247,14 @@ that compiles to WebAssembly.")
 (define-public scummvm
   (package
     (name "scummvm")
-    (version "2026.2.0")
+    (version "2.9.1")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://downloads.scummvm.org/frs/scummvm/" version
                            "/scummvm-" version ".tar.xz"))
        (sha256
-        (base32 "1wv0z9c4dnjywgla9zhbkgnzahj829ybvcx9jw67hdmagnbys42f"))))
+        (base32 "1qspqawdazsxisxm1lxzgi0i4gx54qd10xyk3nmmirwxz9mg70ka"))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -3458,7 +3452,7 @@ This is a part of the TiLP project.")
 (define-public mame
   (package
     (name "mame")
-    (version "0.287")
+    (version "0.252")
     (source
      (origin
        (method git-fetch)
@@ -3467,16 +3461,16 @@ This is a part of the TiLP project.")
              (commit (apply string-append "mame" (string-split version #\.)))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1p9v71gvaqiyj6sa1b0wkdksa9wnr6yr2a43ckycljjfas5s36kq"))
+        (base32 "07qhcm1v47sy2wj30nx3cbhvcbgki0cl83gabr0miiw60fhgyn6j"))
        (modules '((guix build utils)))
        (snippet
         ;; Remove bundled libraries.
         '(begin
            (with-directory-excursion "3rdparty"
              (for-each delete-file-recursively
-                       '("asio" "expat" "glm" "flac" "libjpeg" "lua"
-                         "portaudio" "portmidi" "pugixml" "rapidjson"
-                         "sqlite3" "utf8proc" "zlib")))))))
+                       '("asio" "expat" "glm" "libflac" "libjpeg" "lua"
+                         "portaudio" "portmidi" "pugixml" "rapidjson" "SDL2"
+                         "SDL2-override" "sqlite3" "utf8proc" "zlib")))))))
     (build-system gnu-build-system)
     (arguments
      (list
@@ -3610,9 +3604,7 @@ This is a part of the TiLP project.")
            libjpeg-turbo
            libxi
            libxinerama
-           ;; MAME requires Lua compiled as C++ to work correctly.
-           ;; See https://www.mamedev.org/?p=523
-           lua-5.4-for-c++
+           lua
            portaudio
            portmidi
            pugixml

gnu/packages/engineering.scm

@@ -33,7 +33,7 @@
 ;;; Copyright © 2022 Peter Polidoro <peter@polidoro.io>
 ;;; Copyright © 2022 Malte Frank Gerdes <malte.f.gerdes@gmail.com>
 ;;; Copyright © 2022 Greg Hogan <code@greghogan.com>
-;;; Copyright © 2022, 2024-2026 Artyom V. Poptsov <poptsov.artyom@gmail.com>
+;;; Copyright © 2022, 2024, 2025 Artyom V. Poptsov <poptsov.artyom@gmail.com>
 ;;; Copyright © 2022, 2025 Maxim Cournoyer <maxim@guixotic.coop>
 ;;; Copyright © 2022, 2023, 2025 Felix Gruber <felgru@posteo.net>
 ;;; Copyright © 2023 Theofilos Pechlivanis <theofilos.pechlivanis@gmail.com>
@@ -46,11 +46,10 @@
 ;;; Copyright © 2025 Matthew Elwin <elwin@northwestern.edu>
 ;;; Copyright © 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2025 Remco van 't Veer <remco@remworks.net>
-;;; Copyright © 2025-2026 bdunahu <bdunahu@operationnull.com>
+;;; Copyright © 2025 bdunahu <bdunahu@operationnull.com>
 ;;; Copyright © 2026 Cayetano Santos <csantosb@inventati.org>
 ;;; Copyright © 2026 Daniel Khodabakhsh <d@niel.khodabakh.sh>
 ;;; Copyright © 2026 Spencer King <spencer.king@wustl.edu>
-;;; Copyright © 2026 Brent Wedderburn <mb@bean.za.net>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -254,21 +253,13 @@ their devices.")
           (replace 'build (assoc-ref gnu:%standard-phases 'build))
           (replace 'check (assoc-ref gnu:%standard-phases 'check))
           (replace 'install
-            (lambda _
-              (let* ((bin (string-append #$output "/bin"))
-                     (share (string-append #$output "/share"))
-                     (apps (string-append share "/applications"))
-                     (icons (string-append share "/icons/hicolor/128x128/apps")))
+            (lambda* (#:key outputs #:allow-other-keys)
+              (let ((bin   (string-append #$output "/bin"))
+                    (share (string-append #$output "/share/librecad")))
                 (mkdir-p bin)
                 (install-file "unix/librecad" bin)
                 (mkdir-p share)
-                (copy-recursively "unix/resources"
-                                  (string-append share "/librecad"))
-                (mkdir-p apps)
-                (install-file "desktop/librecad.desktop" apps)
-                (mkdir-p icons)
-                (copy-file "librecad/res/main/librecad.png"
-                           (string-append icons "/librecad.png"))))))))
+                (copy-recursively "unix/resources" share)))))))
     (inputs
      (list bash-minimal boost muparser freetype qtbase-5 qtsvg-5))
     (native-inputs
@@ -438,8 +429,9 @@ optimizer; and it can produce photorealistic and design review images.")
                 "0x37vfp6k0d2z3gnig0hbicvi0jp8v267xjnn3z8jdllpiaa6p3k"))
               (snippet
                ;; Remove a non-free file.
-               #~(begin
-                   (delete-file "doc/psfig.sty")))
+               '(begin
+                  (delete-file "doc/psfig.sty")
+                  #t))
               (patches (search-patches "fastcap-mulSetup.patch"
                                        "fastcap-mulGlobal.patch"))))
     (build-system gnu-build-system)
@@ -449,93 +441,79 @@ optimizer; and it can produce photorealistic and design review images.")
      ;; LaTeX Warning: Citation `nabors91' on page 2 undefined on input line
      ;; 3.
      `(("texlive" ,(texlive-local-tree))
-       ("ghostscript" ,ghostscript)
-       ("libfaketime" ,libfaketime)))
+       ("ghostscript" ,ghostscript)))
     (arguments
-     (list
-      #:make-flags #~(list "CC=gcc" "RM=rm" "SHELL=sh"
-                           (string-append
-                            "CFLAGS="
-                            "-Wno-error=implicit-int"
-                            " -Wno-error=return-mismatch"
-                            " -Wno-error=implicit-function-declaration")
-                           "all")
+     `(#:make-flags '("CC=gcc" "RM=rm" "SHELL=sh" "all")
        #:parallel-build? #f
        #:tests? #f ;; no tests-suite
-       #:modules `((srfi srfi-1)
-                   ,@%default-gnu-modules)
+       #:modules ((srfi srfi-1)
+                  ,@%default-gnu-modules)
        #:phases
-       #~(modify-phases %standard-phases
-           (add-after 'build 'make-doc
-             (lambda _
-               (invoke "faketime"
-                       "1970-01-01 00:00:00"
-                       "make" "CC=gcc" "RM=rm" "SHELL=sh" "manual")))
-           (add-before 'make-doc 'fix-doc
-             (lambda _
-               (substitute* "doc/Makefile" (("/bin/rm") (which "rm")))
-               (substitute* (find-files "doc" "\\.tex")
-                 (("\\\\special\\{psfile=([^,]*),.*scale=([#0-9.]*).*\\}"
-                   all file scale)
-                  (string-append "\\includegraphics[scale=" scale "]{"
-                                 file "}"))
-                 (("\\\\psfig\\{figure=([^,]*),.*width=([#0-9.]*in).*\\}"
-                   all file width)
-                  (string-append "\\includegraphics[width=" width "]{"
-                                 file "}"))
-                 (("\\\\psfig\\{figure=([^,]*),.*height=([#0-9.]*in).*\\}"
-                   all file height)
-                  (string-append "\\includegraphics[height=" height "]{"
-                                 file "}"))
-                 (("\\\\psfig\\{figure=([^,]*)\\}" all file)
-                  (string-append "\\includegraphics{" file "}")))
-               (substitute* '("doc/mtt.tex" "doc/tcad.tex" "doc/ug.tex")
-                 (("^\\\\documentstyle\\[(.*)\\]\\{(.*)\\}"
-                   all options class)
-                  (string-append "\\documentclass[" options "]{"
-                                 class "}\n"
-                                 "\\usepackage{graphicx}\n"
-                                 "\\usepackage{robinspace}"))
-                 (("\\\\setlength\\{\\\\footheight\\}\\{.*\\}" all)
-                  (string-append "%" all))
-                 (("\\\\setstretch\\{.*\\}" all)
-                  (string-append "%" all)))))
-           (delete 'configure)
-           (add-before 'install 'clean-bin
-             (lambda _
-               (delete-file (string-append (getcwd) "/bin/README"))))
-           (add-before 'install 'make-pdf
-             (lambda _
-               (setenv "TEXMFVAR" "/tmp")     ;For texlive font cache
-               (with-directory-excursion "doc"
-                 (for-each (lambda (file)
-                             (invoke "faketime"
-                                     "-f"
-                                     "1970-01-01 00:00:00"
-                                     "dvips" file "-o"))
-                           (find-files "." "\\.dvi"))
-                 (for-each (lambda (file)
-                             (invoke "faketime"
-                                     "-f"
-                                     "1970-01-01 00:00:00"
-                                     "ps2pdf" file))
-                           '("mtt.ps" "ug.ps" "tcad.ps"))
-                 (invoke "make" "clean"))))
-           (replace 'install
-             (lambda _
-               (let* ((data (string-append #$output "/share"))
-                      (bin (string-append #$output "/bin"))
-                      (doc (string-append data "/doc/" #$name "-" #$version))
-                      (examples (string-append doc "/examples")))
-                 (with-directory-excursion "bin"
-                   (for-each (lambda (f)
-                               (install-file f bin))
-                             (find-files "." ".*")))
-                 (with-directory-excursion "doc"
-                   (for-each (lambda (f)
-                               (install-file f doc))
-                             (find-files "." ".pdf")))
-                 (copy-recursively "examples" examples)))))))
+       (modify-phases %standard-phases
+         (add-after 'build 'make-doc
+           (lambda _
+             (invoke "make" "CC=gcc" "RM=rm" "SHELL=sh" "manual")))
+         (add-before 'make-doc 'fix-doc
+           (lambda _
+             (substitute* "doc/Makefile" (("/bin/rm") (which "rm")))
+             (substitute* (find-files "doc" "\\.tex")
+               (("\\\\special\\{psfile=([^,]*),.*scale=([#0-9.]*).*\\}"
+                 all file scale)
+                (string-append "\\includegraphics[scale=" scale "]{"
+                               file "}"))
+               (("\\\\psfig\\{figure=([^,]*),.*width=([#0-9.]*in).*\\}"
+                 all file width)
+                (string-append "\\includegraphics[width=" width "]{"
+                               file "}"))
+               (("\\\\psfig\\{figure=([^,]*),.*height=([#0-9.]*in).*\\}"
+                 all file height)
+                (string-append "\\includegraphics[height=" height "]{"
+                               file "}"))
+               (("\\\\psfig\\{figure=([^,]*)\\}" all file)
+                (string-append "\\includegraphics{" file "}")))
+             (substitute* '("doc/mtt.tex" "doc/tcad.tex" "doc/ug.tex")
+               (("^\\\\documentstyle\\[(.*)\\]\\{(.*)\\}"
+                 all options class)
+                (string-append "\\documentclass[" options "]{"
+                               class "}\n"
+                               "\\usepackage{graphicx}\n"
+                               "\\usepackage{robinspace}"))
+               (("\\\\setlength\\{\\\\footheight\\}\\{.*\\}" all)
+                (string-append "%" all))
+               (("\\\\setstretch\\{.*\\}" all)
+                (string-append "%" all)))
+             #t))
+         (delete 'configure)
+         (add-before 'install 'clean-bin
+           (lambda _
+             (delete-file (string-append (getcwd) "/bin/README"))
+             #t))
+         (add-before 'install 'make-pdf
+           (lambda _
+             (setenv "TEXMFVAR" "/tmp")     ;For texlive font cache
+             (with-directory-excursion "doc"
+               (and
+                (for-each (lambda (file)
+                            (invoke "dvips" file "-o"))
+                          (find-files "." "\\.dvi"))
+                (for-each (lambda (file)
+                            (invoke "ps2pdf" file))
+                          '("mtt.ps" "ug.ps" "tcad.ps"))
+                (invoke "make" "clean")))))
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (data (string-append out "/share"))
+                    (bin (string-append out "/bin"))
+                    (doc (string-append data "/doc/" ,name "-" ,version))
+                    (examples (string-append doc "/examples")))
+               (with-directory-excursion "bin"
+                 (for-each (lambda (f)
+                             (install-file f bin))
+                           (find-files "." ".*")))
+               (copy-recursively "doc" doc)
+               (copy-recursively "examples" examples)
+               #t))))))
     (home-page "https://www.rle.mit.edu/cpg/research_codes.htm")
     (synopsis "Multipole-accelerated capacitance extraction program")
     (description
@@ -914,65 +892,64 @@ user-level language.")
 
 ;; TODO: Keep in sync with radare2.
 (define-public iaito
-  (package
-    (name "iaito")
-    (version "6.1.4")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/radareorg/iaito")
-                     (commit version)))
-              (sha256
-               (base32
-                "16sp73k6ighjwp80nvf55lwzv0fb8p4ki76mnsc8xhl3vq7pka0w"))
-              (file-name (git-file-name name version))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:tests? #f ;no tests
-      #:modules '((guix build gnu-build-system) (guix build qt-utils)
-                  (guix build utils))
-      #:imported-modules `((guix build qt-utils)
-                           ,@%default-gnu-imported-modules)
-      #:phases
-      #~(modify-phases %standard-phases
-          ;; The build system assumes the sdb lib is installed alongside
-          ;; radare2. We already patch the radare2 package to use a
-          ;; system-installed sdb rather than install its own, so we must
-          ;; propagate those changes here.
-          (add-before 'configure 'add-sdb-libs
-            (lambda _
-              (substitute* '("./src/lib_radare2.pri")
-                (("pkg-config --libs r_core" all)
-                 (string-append all " sdb")))))
-          (add-after 'install 'wrap-qt
-            (lambda* (#:key inputs outputs #:allow-other-keys)
-              (wrap-all-qt-programs #:outputs outputs
-                                    #:inputs inputs
-                                    #:qtbase (assoc-ref inputs "qtbase")))))))
-    (inputs
-     (list capstone
-           libuv
-           libzip
-           lz4
-           openssl
-           qtbase
-           qtsvg
-           qtwayland
-           radare2
-           sdb))
-    (native-inputs
-     (list pkg-config python-minimal-wrapper))
-    (native-search-paths (list (search-path-specification
-                                 (variable "R2_LIBR_PLUGINS")
-                                 (files (list "lib/radare2"))
-                                 (separator #f)))) ;single value
-    (home-page "https://github.com/radareorg/iaito")
-    (synopsis "Official radare2 GUI")
-    (description "Iaito is the official graphical interface for radare2, a
+  ;; Commit "Release 6.1.2"
+  (let ((commit "790878048ecb62f4d2f1b5f848948059dd5bb8fe")
+        (revision "1"))
+    (package
+      (name "iaito")
+      (version (git-version "6.1.2" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                       (url "https://github.com/radareorg/iaito")
+                       (commit commit)))
+                (sha256
+                 (base32
+                  "00nqn3mx2fj5higz4niwl0nx04vnjwzccw6zjx3rhwf6fj5yfamm"))
+                (file-name (git-file-name name version))))
+      (build-system gnu-build-system)
+      (arguments
+       (list
+        #:tests? #f ;no tests
+        #:modules '((guix build gnu-build-system) (guix build qt-utils)
+                    (guix build utils))
+        #:imported-modules `((guix build qt-utils)
+                             ,@%default-gnu-imported-modules)
+        #:phases
+        #~(modify-phases %standard-phases
+            ;; The build system assumes the sdb lib is installed alongside
+            ;; radare2. We already patch the radare2 package to use a
+            ;; system-installed sdb rather than install its own, so we must
+            ;; propagate those changes here.
+            (add-before 'configure 'add-sdb-libs
+              (lambda _
+                (substitute* '("./src/lib_radare2.pri")
+                  (("pkg-config --libs r_core" all)
+                   (string-append all " sdb")))))
+            (add-after 'install 'wrap-qt
+              (lambda* (#:key inputs outputs #:allow-other-keys)
+                (wrap-all-qt-programs #:outputs outputs
+                                      #:inputs inputs
+                                      #:qtbase (assoc-ref inputs "qtbase")))))))
+      (inputs
+       (list capstone
+             libuv
+             libzip
+             lz4
+             openssl
+             qtbase
+             qtsvg
+             qtwayland
+             radare2
+             sdb))
+      (native-inputs
+       (list pkg-config python-minimal-wrapper))
+      (home-page "https://github.com/radareorg/iaito")
+      (synopsis "Official radare2 GUI")
+      (description "Iaito is the official graphical interface for radare2, a
 libre reverse engineering framework.  Iaito focuses on simplicity, parity with
 commands, features, and keybindings.")
-    (license license:gpl3+)))
+      (license license:gpl3+))))
 
 (define-public inspekt3d
   (let ((commit "703f52ccbfedad2bf5240bf8183d1b573c9d54ef")
@@ -1056,6 +1033,32 @@ in the context of per-cpu data.  The library offers ABI headers to interface
 with the kernel and various utilities such as per-cpu counters.")
       (license (list license:lgpl2.1 license:expat)))))
 
+(define-public linsmith
+  (package
+    (name "linsmith")
+    (version "0.99.33")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "mirror://sourceforge/linsmith/linsmith/linsmith-"
+                    version "/linsmith-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1629p29casy9pgy8hzva1bmgrvh923qk01ls3anik6zqn6swkjfn"))))
+    (build-system gnu-build-system)
+    (arguments
+     '(#:configure-flags '("CFLAGS=-fcommon")))
+    (native-inputs
+     (list pkg-config))
+    (inputs
+     (list gtk+-2 libgnomeui))
+    (home-page "https://jcoppens.com/soft/linsmith/index.en.php")
+    (synopsis "Smith Charting program")
+    (description "LinSmith is a Smith Charting program, mainly designed for
+educational use.  As such, there is an emphasis on capabilities that improve
+the 'showing the effect of'-style of operation.")
+    (license license:gpl2+)))
+
 (define-public valeronoi
   (package
     (name "valeronoi")
@@ -1228,7 +1231,7 @@ specified in rfc2217 and a (Linux specific) CAN mode.")
 (define-public minicom
   (package
     (name "minicom")
-    (version "2.11.1")
+    (version "2.10")
     (source
      (origin
        (method git-fetch)
@@ -1236,7 +1239,7 @@ specified in rfc2217 and a (Linux specific) CAN mode.")
              (url "https://salsa.debian.org/minicom-team/minicom.git")
              (commit version)))
        (sha256
-        (base32 "15k20qbxrjdxadwzkp31hjy7apdasrsgs532kwmlkpzs92ff4ghs"))
+        (base32 "0sxbyf1li3lsrvkjpn04xz6ywa42ggfc1fhdrmsibfkhqja9abn0"))
        (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (arguments
@@ -1361,33 +1364,24 @@ determines the frequencies, decay constants, amplitudes, and phases of those sin
 (define-public guile-libctl
   (package
     (name "guile-libctl")
-    (version "4.6.0")
+    (version "4.2.0")
     (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                     (url "https://github.com/NanoComp/libctl")
-                     (commit (string-append "v" version))))
-              (file-name (git-file-name name version))
+              (method url-fetch)
+              (uri
+               (string-append
+                "https://github.com/NanoComp/libctl/releases/download/v"
+                version "/libctl-" version ".tar.gz"))
               (sha256
                (base32
-                "1lsch1qc5w9yyprrvawfwbnz7na4qah0p752kxxv144xp8yq98x7"))))
+                "0x8r56lpfq83kfbq28vr25icl19xpfd6fjrxzcpdmv30l9pash83"))))
     (build-system gnu-build-system)
     (arguments
-     (list #:configure-flags
-           #~(list "--enable-shared")
-           #:phases
-           #~(modify-phases %standard-phases
-               ;; Avoid bin/sh shebang in configure.
-               (add-before 'bootstrap 'no-/bin/sh
-                 (lambda _ (delete-file "autogen.sh"))))))
+      `(#:configure-flags '("--enable-shared")))
     (native-inputs
-     (list autoconf
-           automake
-           libtool
-           gfortran))
+     `(("fortran" ,gfortran)))
     (inputs
-     (list guile-3.0))
-    (home-page "https://libctl.readthedocs.io/en/latest/")
+     (list guile-2.2))
+    (home-page "http://ab-initio.mit.edu/wiki/index.php/Libctl")
     (synopsis "Flexible control files implementation for scientific simulations")
     (description
      "Libctl is a Guile-based library implementing flexible control files
@@ -1397,7 +1391,7 @@ for scientific simulations.")
 (define-public mpb
   (package
     (name "mpb")
-    (version "1.12.0")
+    (version "1.8.0")
     (source (origin
               (method url-fetch)
               (uri
@@ -1406,41 +1400,50 @@ for scientific simulations.")
                 version "/mpb-" version ".tar.gz"))
               (sha256
                (base32
-                "197dm8z5hfikivb73rhywyq976rn1k621bf1admgc5xjaii20awd"))))
+                "1jgrb7dd6qs6j6y1gnxmdgrh79l2bvqa6nk60a4pw1annsks4brd"))))
     (build-system gnu-build-system)
     (arguments
-     (list
-      #:configure-flags
-      #~(list
-         (string-append "--with-libctl="
-                        #$(this-package-input "guile-libctl") "/share/libctl")
-         "--enable-shared")))
+     `(#:configure-flags
+       (list (string-append "--with-libctl="
+                            (assoc-ref %build-inputs "libctl")
+                            "/share/libctl")
+             "--enable-shared")
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'relax-gcc-14-strictness
+           (lambda _
+             (setenv "CFLAGS"
+                     (string-join
+                      (list "-Wno-error=incompatible-pointer-types"
+                            "-Wno-error=implicit-function-declaration"
+                            "-Wno-error=int-conversion")
+                      " ")))))))
     (native-inputs
-     (list gfortran
-           pkg-config
-           swig-4.4))
+     `(("fortran" ,gfortran)
+       ("pkg-config" ,pkg-config)
+       ("swig" ,swig-4.0)))
     (inputs
-     (list fftw
-           gsl
-           guile-3.0
-           guile-libctl
-           hdf5
-           openblas
-           readline
-           zlib))
-    (home-page "https://mpb.readthedocs.io/en/latest/")
+     `(("fftw" ,fftw)
+       ("gsl" ,gsl)
+       ("guile" ,guile-2.2)
+       ("hdf5" ,hdf5)
+       ("openblas" ,openblas)
+       ("libctl" ,guile-libctl)
+       ("readline" ,readline)
+       ("zlib" ,zlib)))
+    (home-page "http://ab-initio.mit.edu/wiki/index.php/MIT_Photonic_Bands")
     (synopsis "Computes band structures and electromagnetic modes of dielectric
 structures")
     (description
-     "MIT Photonic-Bands (MPB) computes definite-frequency eigenstates
-(harmonic modes) of Maxwell's equations in periodic dielectric structures for
-arbitrary wavevectors, using fully-vectorial and three-dimensional methods.")
+     "MIT Photonic-Bands (MPB) computes definite-frequency eigenstates (harmonic modes)
+of Maxwell's equations in periodic dielectric structures for arbitrary wavevectors, using
+fully-vectorial and three-dimensional methods.")
     (license license:gpl2+)))
 
 (define-public meep
   (package
     (name "meep")
-    (version "1.33.0")
+    (version "1.30.1")
     (source (origin
               (method url-fetch)
               (uri
@@ -1449,7 +1452,7 @@ arbitrary wavevectors, using fully-vectorial and three-dimensional methods.")
                 version "/meep-" version ".tar.gz"))
               (sha256
                (base32
-                "1azhgz6s95siqmnxb3if6waxbvia3bij5jmxgxjz4sgn2ahw1axx"))))
+                "1h80d7i7v06fxfdsa496b542dvr105c4v1n7pk8m3jssvbxvv2a0"))))
     (build-system gnu-build-system)
     (arguments
      (list #:configure-flags
@@ -1459,11 +1462,11 @@ arbitrary wavevectors, using fully-vectorial and three-dimensional methods.")
     (native-inputs
      (list gfortran
            pkg-config
-           swig-4.4))
+           swig-4.0))
     (inputs
      (list fftw
            gsl
-           guile-3.0
+           guile-2.2
            guile-libctl
            harminv
            hdf5
@@ -1718,7 +1721,7 @@ bootloader in Espressif ESP8266 & ESP32 series chips.")
 (define-public radare2
   (package
     (name "radare2")
-    (version "6.1.4")                   ;keep in sync with iaito
+    (version "6.1.2")                   ;keep in sync with iaito
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1726,7 +1729,7 @@ bootloader in Espressif ESP8266 & ESP32 series chips.")
                     (commit version)))
               (sha256
                (base32
-                "0gq90rwwmkfc7v1rhyr3lw859rsm1ryhzrwidhhh6pbp6jv03k6w"))
+                "1d4sslhjxm00fchqcszfa59wf51v632jvf7aj4af0vdhl9f9n8k2"))
               (file-name (git-file-name name version))
               (patches
                (search-patches "radare2-fix-meson-build-to-use-sys-sdb.patch"
@@ -1782,10 +1785,6 @@ bootloader in Espressif ESP8266 & ESP32 series chips.")
     (propagated-inputs
      ;; In the Libs: section of r_hash.pc.
      (list xxhash))
-    (native-search-paths (list (search-path-specification
-                                 (variable "R2_LIBR_PLUGINS")
-                                 (files (list "lib/radare2"))
-                                 (separator #f)))) ;single value
     (home-page "https://radare.org/")
     (synopsis "Reverse engineering framework")
     (description
@@ -1803,131 +1802,6 @@ like relocation symbols.  It is able to deal with malformed binaries, making
 it suitable for security research and analysis.")
     (license license:lgpl3)))
 
-(define-public r2ghidra
-  (package
-    (name "r2ghidra")
-    (version "6.1.4")
-    (source
-     (origin
-       (method git-fetch)
-       (uri (git-reference
-              (url "https://github.com/radareorg/r2ghidra")
-              (commit version)))
-       (file-name (git-file-name name version))
-       (sha256
-        (base32 "04x7vmg67zz0llkz3r3nmcky5z8c4ha31z8jzkm19dnyslw2qlxr"))
-       (modules '((guix build utils)))
-       (snippet
-        ;; Delete bundled libs and remove their references.
-        #~(begin (delete-file-recursively "subprojects")
-                 (substitute* "ghidra/deps.mk"
-                   (("ZLIB_LDFLAGS=.*") "")
-                   (("ZLIB_CFLAGS=.*") ""))
-                 (substitute* "src/Makefile"
-                   (("(all:) subprojects-zlib" _ f) f)
-                   (("PUGIXML_OBJS=.*") "")
-                   (("PUGIXML_SRCS=.*") "")
-                   (("PUGIXML_CFLAGS=.*") ""))))))
-    (build-system gnu-build-system)
-    (arguments
-     (list
-      #:make-flags
-      #~(let* ((zlib #$(this-package-input "zlib"))
-               (pugixml #$(this-package-input "pugixml-next")))
-          (list (string-append "CC=" #$(cc-for-target))
-                (format #f "ZLIB_LDFLAGS=-L~a/lib/ -lz" zlib)
-                (format #f "LDFLAGS=-L~a/lib/ -lpugixml" pugixml)
-                (format #f "ZLIB_CFLAGS=-I~a/include/" zlib)
-                (format #f "PUGIXML_CFLAGS=-I~a/include/" pugixml)
-                ;; Ensure this matches R2_LIBR_PLUGINS as exported
-                ;; by radare2 & iaito.
-                (format #f "PLUGDIR=~a/lib/radare2" #$output)))
-      #:tests? #f    ;no 'check' rule, test dir may require 3rd-party binaries
-      #:phases
-      #~(modify-phases %standard-phases
-          (add-after 'unpack 'skip-git-and-copy-ghidra
-            (lambda _
-              ;; GIT is assumed to point to the git binary, but it is
-              ;; only checked to be a file; this short-circuits the check.
-              (setenv "GIT" "configure")
-              (copy-recursively
-               (search-input-directory %build-inputs "share/ghidra-native")
-               "subprojects/ghidra-native")))
-          (add-before 'build 'set-system-sleighhome
-            ;; Helper files which try to install in radare2's path
-            ;; in the store, irrespective of PLUGDIR.  As long as
-            ;; r2ghidra knows where to find them, we can place them
-            ;; anywhere.
-            (lambda _
-              (let ((sleighhome
-                     (in-vicinity #$output "lib/radare2/sleighhome")))
-                ;; Hardcoded path to check.
-                (substitute* "src/SleighAsm.cpp"
-                  (("(path = strdup \\()[^\\)]*" _ f)
-                   (string-append f "\"" sleighhome "\"")))
-                ;; Install location.
-                (substitute* "ghidra/Makefile"
-                  (("(sleigh-install D=\")\\$\\(DD\\)" _ f)
-                   (string-append f sleighhome)))))))))
-    (inputs
-     (list capstone
-           libuv
-           libzip
-           lz4
-           openssl
-           pugixml-next
-           radare2
-           sdb
-           zlib))
-    (native-inputs
-     (list ghidra-native
-           pkg-config
-           python-minimal))
-    (home-page "https://www.radare.org/")
-    (synopsis "Native Ghidra Decompiler for radare2")
-    (description
-     "r2ghidra is a radare2 plugin which integrates the
- @url{https://www.nsa.gov/ghidra,Ghidra} decompiler.")
-    ;; Specified lgpl3 'only' in README.
-    (license license:lgpl3)))
-
-(define-public ghidra-native
-  ;; Latest commit; last release (8/2025) incompatible with current r2ghidra.
-  (let ((commit "df065bad0f9e7cea233479048681f811c4f640a2")
-        (revision "1"))
-    (package
-      (name "ghidra-native")
-      (version (git-version "0.6.2" revision commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-                (url "https://github.com/radareorg/ghidra-native")
-                (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32 "14bzrl856x3bsqjpks85rzxcxncfmnjwc5knv2h4lybfz4bxcn39"))))
-      (build-system gnu-build-system)
-      (arguments
-       (list
-        #:tests? #f                     ;no tests
-        #:make-flags #~(list "patch")
-        #:phases
-        #~(modify-phases %standard-phases
-            (delete 'configure)
-            (replace 'install           ;no install target
-              (lambda _
-                (let ((ghidra-native-patched
-                       (in-vicinity #$output "/share/ghidra-native/src")))
-                  (copy-recursively "src" ghidra-native-patched)))))))
-      (home-page "https://www.radare.org/")
-      (synopsis "Native parts of ghidra")
-      (description
-       "This package contains the native parts of ghidra, to be used from
-r2ghidra.")
-      (properties '((hidden? . #t)))    ;only provides source files
-      (license license:asl2.0))))
-
 (define-public rayforge
   (package
     (name "rayforge")
@@ -2128,7 +2002,7 @@ high-performance parallel differential evolution (DE) optimization algorithm.")
 (define-public gpx
   (package
     (name "gpx")
-    (version "2.6.8")
+    (version "2.5.2")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -2137,7 +2011,7 @@ high-performance parallel differential evolution (DE) optimization algorithm.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1izs8s5npkbfrsyk17429hyl1vyrbj9dp6vmdlbb2vh6mfgl54h8"))))
+                "1yab269x8qyf7rd04vaxyqyjv4pzz9lp4sc4dwh927k23avr3rw5"))))
     (build-system gnu-build-system)
     (home-page "https://github.com/markwal/GPX")
     (synopsis "Converting gcode to x3g files for 3D printing")
@@ -2252,7 +2126,7 @@ specification can be downloaded at @url{http://3mf.io/specification/}.")
 (define-public manifold
   (package
     (name "manifold")
-    (version "3.4.1")
+    (version "3.3.2")
     (source
      (origin
        (method git-fetch)
@@ -2261,7 +2135,7 @@ specification can be downloaded at @url{http://3mf.io/specification/}.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0x65708r6xln8sd53abbn1qnhz3wxnicn2837ida73ihargk5js1"))))
+        (base32 "0bq1gzvhyp0b9v0q6magwf0yi9lzqgh3fj9104wqfvpl2skgzkg7"))))
     (build-system cmake-build-system)
     (inputs (list onetbb clipper2 assimp python-nanobind googletest))
     (arguments
@@ -2759,7 +2633,7 @@ but also adds new features and improves existing ones.")
 (define-public emacs-scad-mode
   (package
     (name "emacs-scad-mode")
-    (version "99.0")
+    (version "98.0")
     (source
      (origin
        (method git-fetch)
@@ -2767,10 +2641,9 @@ but also adds new features and improves existing ones.")
              (url "https://github.com/openscad/emacs-scad-mode")
              (commit version)))
        (sha256
-        (base32 "0mqfvff8f7lqjviwz30j7vkb098xd0k8bdzznb77aw4q7gdsf8nm"))
+        (base32 "19mn6z98c8s7mspa7j8xw7za33gmpsy4iw2r9xiggdv7yh6mh8h8"))
        (file-name (git-file-name name version))))
     (build-system emacs-build-system)
-    (arguments (list #:tests? #f))    ; no tests
     (propagated-inputs (list emacs-compat))
     (synopsis "Emacs mode to edit OpenSCAD files")
     (description
@@ -2848,7 +2721,7 @@ dynamics is used by FreeCAD 1.0.0 for its new Assembly workbench.")
 (define-public freecad
   (package
     (name "freecad")
-    (version "1.1.1")
+    (version "1.1.0")
     (source
      (origin
        (method git-fetch)
@@ -2858,7 +2731,7 @@ dynamics is used by FreeCAD 1.0.0 for its new Assembly workbench.")
              (recursive? #t)))          ;needed for the AddonManager
        (file-name (git-file-name name version))
        (sha256
-        (base32 "05dx7ifx33705mxb0vc82j0mzzkazakgadfgq5bws30qrxp49xgg"))
+        (base32 "029ndw1dypx0xhs4fyiinf7gpk8am0vm9b24idvdsx9x7ghrqz4j"))
        (snippet
         #~(begin
             (use-modules (guix build utils))
@@ -3045,7 +2918,7 @@ Runge-Kutta method of order 5(4) from @code{scipy.integrate.solve_ivp.}")
 (define-public cgns
   (package
     (name "cgns")
-    (version "4.5.2")
+    (version "4.3.0")
     (source
      (origin
        (method git-fetch)
@@ -3054,7 +2927,7 @@ Runge-Kutta method of order 5(4) from @code{scipy.integrate.solve_ivp.}")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "0r8y6lddp7q9nb6804c6bbr4y0pv7ssdzi9m5ddx50ksvfv382fw"))))
+        (base32 "0jig1y7lv9qk1ri2gqws7ffpajmhxnank7gbyna9hfaghsxdlnvd"))))
     (build-system cmake-build-system)
     (arguments
      (list #:configure-flags
@@ -4087,7 +3960,7 @@ G-codes to binary and vice versa.")
      (list bash-minimal
            boost-1.83
            cereal
-           cgal-5
+           cgal
            curl
            dbus
            eigen

gnu/packages/erlang.scm

@@ -50,7 +50,7 @@
 (define-public erlang
   (package
     (name "erlang")
-    (version "28.4.3")
+    (version "27.3.4.6")
     (source (origin
               (method git-fetch)
               ;; The tarball from http://erlang.org/download contains many
@@ -62,7 +62,7 @@
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1dsdmp2rccc0rhzy2w8r4amxmc6nr9hbi053j2s0bg9db30b48rc"))
+                "0dhz2c7w28ss0ypj7jh88pfs3kc8hbwiiq91in1j2miy5sn4cp3x"))
               (patches (search-patches "erlang-man-path.patch"))))
     (build-system gnu-build-system)
     (native-inputs
@@ -75,7 +75,7 @@
                                "/OTP-" version "/otp_doc_man_" version ".tar.gz"))
            (sha256
             (base32
-             "1g17wzv8j12g9272yvv55nj4wqs09hxkv3i0vnp7d6gcs24bmphi"))))))
+             "1j1fcli7ma9vi4qyv67lq7yiznhpnfvcmh57bn8qxvha6ky2pngm"))))))
     (inputs
      (list ncurses openssl wxwidgets))
     (propagated-inputs

gnu/packages/esolangs.scm

@@ -136,3 +136,41 @@ whenever possible to the extent that the above points are not compromised.
 affect your score when code golfing.")
     (properties `((lint-hidden-cpe-vendors "premio" "jenkins")))
     (license license:expat)))
+
+(define-public shakespeare-spl
+  (package
+    (name "shakespeare-spl")
+    (version "1.2.1")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://sourceforge/shakespearelang/spl-"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "1lxpfhv01kcwy4l4xgx7j765g8g0v74jns0cr908nfw55h5fy1hj"))
+              (patches
+               (search-patches
+                "shakespeare-spl-fix-grammar.patch"))))
+    (build-system copy-build-system)
+    (arguments
+     `(#:imported-modules (,@%default-gnu-imported-modules
+                           (guix build copy-build-system))
+       #:modules ((guix build copy-build-system)
+                  ((guix build gnu-build-system) #:prefix gnu:)
+                  (guix build utils))
+       #:install-plan '(("spl/bin" "bin")
+                        ("spl/lib" "lib")
+                        ("spl/include" "include"))
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'install 'build
+           (assoc-ref gnu:%standard-phases 'build)))))
+    (native-inputs
+     (list bison flex))
+    (home-page "http://shakespearelang.sourceforge.net/")
+    (synopsis "Write programs like Shakespearean plays")
+    (description "Shakespeare is a programming language with the design goal
+of making programs read like plays.  The characters in the play are variables.
+If you want to assign a character, let's say Juliet, a positive value, you put
+her and another character on the stage and let that character praise Juliet.")
+    (license license:gpl2+)))