gnu: r-spatstat-random: Update to 3.5-0.

* gnu/packages/cran.scm (r-spatstat-random): Update to 3.5-0.
[propagated-inputs]: Add r-matrix and r-spatstat-sparse.

Change-Id: I795740f5ca38cd3b4b7f52a0a46965253ed81885

gnu/packages/cran.scm

@@ -746,13 +746,13 @@ distribution).")
 (define-public r-bigassertr
   (package
     (name "r-bigassertr")
-    (version "0.1.7")
+    (version "0.2.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "bigassertr" version))
        (sha256
-        (base32 "0py8nr937ddi6c7r2bcqrpvqkh1mhmk5ylnrmqlahawnwmpksm6g"))))
+        (base32 "037shjim8syqfc563i6fs0slkdrmfp3pjfy15kfxr5jdk8yvyka3"))))
     (properties `((upstream-name . "bigassertr")))
     (build-system r-build-system)
     (native-inputs (list r-testthat))
@@ -1452,13 +1452,13 @@ Companion to Applied Regression, Third Edition, Sage.")
 (define-public r-cards
   (package
     (name "r-cards")
-    (version "0.7.1")
+    (version "0.8.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "cards" version))
        (sha256
-        (base32 "1fd5g5pvasxfg49fs6khrlaj19z56xsf4m4yjh2vwwm86f87ksff"))))
+        (base32 "06r9n0cf884z22xflbcxrvmfil4xym13fa3kx0sh7jqkk4232vh7"))))
     (properties
      `((upstream-name . "cards")
        ;; Do not create dependency cycle.
@@ -1937,6 +1937,37 @@ data is given, then a Gaussian process is fit to the data and used to create
 the contour plot.")
     (license license:gpl3)))
 
+(define-public r-corrr
+  (package
+    (name "r-corrr")
+    (version "0.4.5")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "corrr" version))
+       (sha256
+        (base32 "06pi4an3a5d66rqxvmk859scpq6m4yrhy9q5icbh95fvhpaqfr1q"))))
+    (properties `((upstream-name . "corrr")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-dplyr
+                             r-ggplot2
+                             r-ggrepel
+                             r-glue
+                             r-purrr
+                             r-rlang
+                             r-seriation
+                             r-tibble))
+    (native-inputs (list r-knitr r-testthat))
+    (home-page "https://github.com/tidymodels/corrr")
+    (synopsis "Correlations in R")
+    (description
+     "This package provides a tool for exploring correlations.  It makes it
+possible to easily perform routine tasks when exploring correlation matrices
+such as ignoring the diagonal, focusing on the correlations of certain
+variables against others, or rearranging and visualizing the matrix in terms
+of the strength of the correlations.")
+    (license license:expat)))
+
 (define-public r-celestial
   (package
     (name "r-celestial")
@@ -5000,14 +5031,14 @@ including:
 (define-public r-gdtools
   (package
     (name "r-gdtools")
-    (version "0.5.0")
+    (version "0.5.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "gdtools" version))
        (sha256
         (base32
-         "15gklyln0260q1jbpx5n2kr472dv3ij3qw7298hciflf0q80isdf"))))
+         "1rs18kf34iihiypmdc6w56wqqnm0k056jz9vhvg86ypszha51hcl"))))
     (build-system r-build-system)
     (arguments
      (list
@@ -8405,13 +8436,13 @@ estimation and robust multivariate analysis with high breakdown point.")
 (define-public r-rsqlite
   (package
     (name "r-rsqlite")
-    (version "3.52.0")
+    (version "3.53.1")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "RSQLite" version))
               (sha256
                (base32
-                "02cqx38nayr0qkbbnvmcfaxgz2clr7jb0c8zskd0k7zvsafsqqyz"))))
+                "0ykbl94n1k61kqmdr1dfj1sq4sy8igzq95hrll7yhp4kdl7j8wqg"))))
     (properties
      '((upstream-name . "RSQLite")
        ;; These are not strictly necessary for running tests and adding them
@@ -9961,14 +9992,14 @@ wind-roses and Walter&Lieth climate diagrams are included.")
 (define-public r-clipr
   (package
     (name "r-clipr")
-    (version "0.8.0")
+    (version "0.8.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "clipr" version))
        (sha256
         (base32
-         "1s9vvv3cxnz8w11gsi8z9ddv9jzib5qf5qqxnwqrrv7vj8cr7hij"))))
+         "1dpiqga6nl67q39qgx2zkdl29fchq0vx14fyx163z8vx72f7ms06"))))
     (build-system r-build-system)
     (native-inputs
      (list r-knitr r-testthat))
@@ -11519,6 +11550,42 @@ server address by means of rules (@code{Rule} class).  The
 cases and the content.")
     (license license:agpl3)))
 
+(define-public r-scrutiny
+  (package
+    (name "r-scrutiny")
+    (version "0.6.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "scrutiny" version))
+       (sha256
+        (base32 "0wqrbzkm4fw556ds8bzpgimy2xs1v7da54cam5bmcvp0yhglx8h6"))))
+    (properties `((upstream-name . "scrutiny")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-cli
+                             r-corrr
+                             r-dplyr
+                             r-ggplot2
+                             r-ggrepel
+                             r-glue
+                             r-lifecycle
+                             r-magrittr
+                             r-purrr
+                             r-rlang
+                             r-stringr
+                             r-tibble
+                             r-tidyr
+                             r-tidyselect))
+    (native-inputs (list r-knitr r-testthat))
+    (home-page "https://lhdjung.github.io/scrutiny/")
+    (synopsis "Error detection in science")
+    (description
+     "The goal of scrutiny is to test published summary statistics for
+consistency using techniques like GRIM and to check their plausibility.  The
+package makes these methods easy to use in a tidyverse-friendly way.  It hopes
+to help the new field of error detection go mainstream.")
+    (license license:expat)))
+
 (define-public r-sendmailr
   (package
     (name "r-sendmailr")
@@ -12862,13 +12929,13 @@ master-slave parallelisation or a coarse-grain islands approach.")
 (define-public r-gap
   (package
     (name "r-gap")
-    (version "1.14")
+    (version "1.15.2")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "gap" version))
        (sha256
-        (base32 "17ryk3x4286ddws8kr18br1ff5bi7w9v0rd6kpyxxyl3ysgny44v"))))
+        (base32 "1xhpcvljzyd62iqchsh8z4n9vv7pdzh9rr7cz7s3cffl492mbbia"))))
     (properties `((upstream-name . "gap")))
     (build-system r-build-system)
     (propagated-inputs (list r-dplyr r-gap-datasets r-ggplot2 r-plotly
@@ -13511,14 +13578,16 @@ effect (co)variances, and residual variance.")
 (define-public r-mets
   (package
     (name "r-mets")
-    (version "1.3.9")
+    (version "1.3.10")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "mets" version))
        (sha256
-        (base32 "0albfa5njy20iv59s5a90csm2sgrhbjl58mjhmf4c1mr476r9w02"))))
-    (properties `((upstream-name . "mets")))
+        (base32 "1j7zkyik4dlfgvjr5a4hh58vmx77w34g0d77n68isa83j84l3lhb"))))
+    (properties
+     '((upstream-name . "mets")
+       (updater-extra-native-inputs . ("r-prodlim"))))
     (build-system r-build-system)
     (arguments
      (list
@@ -14041,14 +14110,14 @@ Analysis Approach Using R.  Chapman-Hall, 2019,
 (define-public r-vegan
   (package
     (name "r-vegan")
-    (version "2.7-3")
+    (version "2.7-5")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "vegan" version))
        (sha256
         (base32
-         "0wh72b8sa1x94b6m4kwd78274y0laf4ccfhsw4jzp2zkx1s1zk0z"))))
+         "1qiczbgnz96nyvvlnmnci4w280g4khwkpsznxqgb6143da4vzmxx"))))
     (build-system r-build-system)
     (native-inputs
      (list gfortran r-compositions r-knitr))
@@ -20350,13 +20419,13 @@ provides an interactive R manager and worker environment.")
 (define-public r-rmumps
   (package
     (name "r-rmumps")
-    (version "5.2.1-41")
+    (version "5.2.1-42")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "rmumps" version))
        (sha256
-        (base32 "18irfcv23wvqba1ssz5b0y2z2cg0a0yi2n3kvikdibcirg97m1yy"))))
+        (base32 "0rxc43b4xvqzq6hc1rna8c0f8lnvwl0vl05bnbzkps3pfjh529q0"))))
     (properties
      `((upstream-name . "rmumps")
        (updater-extra-inputs . ("zlib"))))
@@ -32817,14 +32886,14 @@ data using:
 (define-public r-bayestestr
   (package
     (name "r-bayestestr")
-    (version "0.18.0")
+    (version "0.18.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "bayestestR" version))
        (sha256
         (base32
-         "1zw28k10jawrp1yvvcm89v7qgv86l6xka74dg2lhw1lq3mmrgy0l"))))
+         "1zcbppwlzbibyjv4n4vx8c3k6hqk05bdl46fai3zslv8g5a9asfy"))))
     (properties
      '((upstream-name . "bayestestR")
        (updater-extra-native-inputs . ("r-logspline"))
@@ -34099,14 +34168,14 @@ This package provides an R interface.")
 (define-public r-rcpphnsw
   (package
     (name "r-rcpphnsw")
-    (version "0.6.0")
+    (version "0.7.0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "RcppHNSW" version))
        (sha256
         (base32
-         "03sqzz1993jsjm5vpyd1n1fpsrdfrky6dpv7m9ialhs1m00fv9m5"))))
+         "0k5czg85sb4wda0l39b7r2nsvsyr0xvhpz1maynzbrzrk5c7hr41"))))
     (properties `((upstream-name . "RcppHNSW")))
     (build-system r-build-system)
     (propagated-inputs (list r-rcpp))
@@ -38016,18 +38085,19 @@ algorithms) can be computed and partitioned matrices can be plotted.")
 (define-public r-upsetr
   (package
     (name "r-upsetr")
-    (version "1.4.0")
+    (version "1.4.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "UpSetR" version))
        (sha256
         (base32
-         "007i0njnjjy7vbrxabwav7a1kk2n0hn2mkvqsdzzfk10ckp5y7im"))))
+         "17jliva42j2gyr1ga18flh0kvxs6m19dfngiaygg5jnwnpxzvhci"))))
     (properties `((upstream-name . "UpSetR")))
     (build-system r-build-system)
     (propagated-inputs
      (list r-ggplot2 r-gridextra r-plyr r-scales))
+    (native-inputs (list r-knitr))
     (home-page "https://github.com/hms-dbmi/UpSetR")
     (synopsis "Visualize intersecting sets")
     (description
@@ -44342,14 +44412,14 @@ in pipelines.")
 (define-public r-parameters
   (package
     (name "r-parameters")
-    (version "0.29.0")
+    (version "0.29.1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "parameters" version))
        (sha256
         (base32
-         "1x9ynip55p6dyp2bsb3gbm4hs8amji7wkzqvr3qws5lk57xkj6s5"))))
+         "0w1lcni0lvdqhg9rms6f3skzwirigylq1353ciffiqsyi1f0qr2z"))))
     (properties `((upstream-name . "parameters")))
     (build-system r-build-system)
     (propagated-inputs
@@ -46270,16 +46340,16 @@ classes into dummy/indicator variables.")
 (define-public r-dunn-test
   (package
     (name "r-dunn-test")
-    (version "1.3.7")
+    (version "1.4.0")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "dunn.test" version))
               (sha256
                (base32
-                "11clwqd6a2p9qc3xd61fylaif5x8w3vnz06z0s4vai50nfxqzxzd"))))
+                "1jqsz4dbmdkqrgxpv5d9l7caj2qsvhpbc41h5l4ggqn8qprs7xvh"))))
     (properties `((upstream-name . "dunn.test")))
     (build-system r-build-system)
-    (propagated-inputs (list r-rlang))
+    (propagated-inputs (list r-rlang r-scrutiny))
     (home-page "https://cran.r-project.org/package=dunn.test")
     (synopsis "Dunn's test of multiple comparisons using rank sums")
     (description
@@ -51972,13 +52042,13 @@ diagonals.  This package allows you to compute the tensor product of arrays.")
 (define-public r-spatstat-explore
   (package
     (name "r-spatstat-explore")
-    (version "3.8-0")
+    (version "3.8-1")
     (source (origin
               (method url-fetch)
               (uri (cran-uri "spatstat.explore" version))
               (sha256
                (base32
-                "1vdicrrjig4shgb2jillyq7dj4a489h3clnxjsrv3zldx9lp8abg"))))
+                "03bxys12wg5gcn7rps2ycb9l0bqrll007r0icvqw1wk309zyr96x"))))
     (properties `((upstream-name . "spatstat.explore")))
     (build-system r-build-system)
     (propagated-inputs
@@ -52149,14 +52219,14 @@ package.")
 (define-public r-spatstat-geom
   (package
     (name "r-spatstat-geom")
-    (version "3.7-3")
+    (version "3.8-1")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "spatstat.geom" version))
        (sha256
         (base32
-         "1gpwxjq4ak205k85g9w614d4k5rclkxya0wxkc53pfrq6v01lfxg"))))
+         "1cs1g3nx5yhp4cgz53ib9n1nki4b2xkpgin4bc1n5ah6r1b5v8r8"))))
     (properties `((upstream-name . "spatstat.geom")))
     (build-system r-build-system)
     (propagated-inputs
@@ -52204,16 +52274,20 @@ for spatial data on a linear network.")
 (define-public r-spatstat-random
   (package
     (name "r-spatstat-random")
-    (version "3.4-5")
+    (version "3.5-0")
     (source
      (origin
        (method url-fetch)
        (uri (cran-uri "spatstat.random" version))
        (sha256
-        (base32 "0lky2h15n8zbrz5m7m4ik8gkp0fhdgyr17ys4vnn6xa6f3gibr89"))))
+        (base32 "1k8y1pxf2f7h06akyia0my4q4ici4q5rmh89vj1k0n345ca0x0xk"))))
     (properties `((upstream-name . "spatstat.random")))
     (build-system r-build-system)
-    (propagated-inputs (list r-spatstat-data r-spatstat-geom r-spatstat-univar
+    (propagated-inputs (list r-matrix
+                             r-spatstat-data
+                             r-spatstat-geom
+                             r-spatstat-sparse
+                             r-spatstat-univar
                              r-spatstat-utils))
     (home-page "https://spatstat.org/")
     (synopsis "Random Generation Functionality for the 'spatstat' Family")