Ricardo Wurmus 1a97739bda guix: Update Bioconductor version to 3.22. ...

* guix/build-system/r.scm (bioconductor-uri): Update to 3.22.
* guix/import/cran.scm (%bioconductor-version): Set to 3.22.

Change-Id: I53c6b0d1ddc37faad90492103b7d02c210f945d7

2025-11-29 12:20:15 +01:00

..

build

gnu: cmake-build: Prevent stalls initiating tests.

2025-11-28 11:36:53 +00:00

build-system

guix: Update Bioconductor version to 3.22.

2025-11-29 12:20:15 +01:00

import

guix: Update Bioconductor version to 3.22.

2025-11-29 12:20:15 +01:00

platforms

guix: Add loongarch platform.

2025-01-25 01:05:22 +08:00

scripts

shell: Ensure graft? is used in profile cache key.

2025-11-24 23:21:55 +01:00

store

ssh: Do not default to port 22 (let guile-ssh do it).

2025-10-06 10:30:33 +02:00

tests

tests: don't use 'file://...' URIs for testing git downloads.

2025-10-12 22:22:01 +02:00

android-repo-download.scm

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avahi.scm

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base16.scm

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base32.scm

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base64.scm

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build-system.scm

build-system: Introduce @* macro for lazy module resolution.

2025-09-04 12:19:55 +02:00

bzr-download.scm

Reapply "Update Maxim's email address."

2025-09-18 13:44:12 +09:00

cache.scm

cache: Remove unused import.

2025-04-14 17:31:49 +02:00

channels.scm

channels: Export channel-reference.

2025-09-23 11:13:22 +02:00

ci.scm

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colors.scm

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combinators.scm

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config.scm.in

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cpio.scm

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cpu.scm

guix: cpu: Recognize CPUs through GCC-15.

2025-08-06 12:02:52 +03:00

cve.scm

cve: Assume that ‘criteria’ is always defined.

2025-10-06 10:40:13 +02:00

cvs-download.scm

cvs-download: Implement SWH fallback.

2025-10-01 10:30:00 +02:00

d3.v3.js

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deprecation.scm

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derivations.scm

derivations: Fix indentation.

2025-02-22 23:55:24 +09:00

describe.scm

ui: Search channels for guix extensions

2025-03-08 17:40:58 +01:00

diagnostics.scm

guix: diagnostics: Export 'info' as replacement.

2025-11-15 15:53:15 +09:00

discovery.scm

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docker.scm

Reapply "Update Maxim's email address."

2025-09-18 13:44:12 +09:00

download.scm

guix: download: Add mirrors for Qt5.

2025-10-29 19:48:30 +01:00

elf.scm

Revert "elf: Remove bundled Guile source."

2025-10-30 16:19:49 +09:00

ftp-client.scm

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gexp.scm

Reapply "Update Maxim's email address."

2025-09-18 13:44:12 +09:00

git-authenticate.scm

git-authenticate: Print a clear error message for malformed keys.

2025-08-23 16:57:21 +02:00

git-download.scm

Reapply "Update Maxim's email address."

2025-09-18 13:44:12 +09:00

git.scm

git: Fix update cached checkout when not a symref.

2025-09-25 22:04:25 +02:00

glob.scm

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gnu-maintenance.scm

gnu-maintenance: ‘generic-html’ recognizes ‘release-file-regexp’ property.

2025-11-18 13:05:49 +01:00

gnupg.scm

Reapply "Update Maxim's email address."

2025-09-18 13:44:12 +09:00

grafts.scm

Revert "elf: Remove bundled Guile source."

2025-10-30 16:19:49 +09:00

graph.js

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graph.scm

graph: graphml backend: simplification

2025-11-27 13:03:52 +01:00

hash.scm

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hg-download.scm

gnu: Remove mercurial/pinned.

2025-11-27 14:22:24 +01:00

http-client.scm

guix: Avoid ‘fdatasync’ call for caches and regular files.

2025-04-14 17:31:50 +02:00

i18n.scm

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inferior.scm

inferior: Fix cached-channel-instance utime call and return value.

2025-11-04 17:45:13 +01:00

ipfs.scm

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least-authority.scm

least-authority: Export default preserved environment variables.

2025-04-19 21:13:21 +09:00

licenses.scm

licenses: Add CERN Open Hardware Licence.

2025-08-03 10:58:14 +02:00

lint.scm

lint: Fix regressions in tests.

2025-11-14 16:42:16 +09:00

man-db.scm

Reapply "Update Maxim's email address."

2025-09-18 13:44:12 +09:00

memoization.scm

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modules.scm

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monad-repl.scm

monad-repl: Add "build-options" command.

2025-10-06 10:36:27 +02:00

monads.scm

gexp: ‘with-parameters’ properly handles ‘%graft?’.

2025-03-05 00:28:49 +01:00

nar.scm

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narinfo.scm

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openpgp.scm

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packages.scm

packages: Add ‘define-deprecated-package’.

2025-10-23 19:35:06 +02:00

pki.scm

pki: Always make /etc/guix/acl world-readable.

2025-07-16 23:50:38 +02:00

platform.scm

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profiles.scm

profiles: package->manifest-entry: Filter packages.

2025-11-03 20:06:14 +08:00

profiling.scm

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progress.scm

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quirks.scm

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read-print.scm

read-print: Attempt to indent package arguments less.

2025-02-09 01:00:00 +01:00

records.scm

records: ‘match-record’ throws a well-formed ’wrong-type-arg’ exception.

2025-10-06 11:06:31 +02:00

remote.scm

remote: Do not double-quote the repl-command.

2024-12-12 12:52:08 +01:00

repl.scm

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rpm.scm

Reapply "Update Maxim's email address."

2025-09-18 13:44:12 +09:00

scripts.scm

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search-paths.scm

Reapply "Update Maxim's email address."

2025-09-18 13:44:12 +09:00

self.scm

ui: Change bug report address to Codeberg.

2025-11-02 00:32:23 +01:00

serialization.scm

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sets.scm

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ssh.scm

ssh: Do not default to port 22 (let guile-ssh do it).

2025-10-06 10:30:33 +02:00

status.scm

Reapply "Update Maxim's email address."

2025-09-18 13:44:12 +09:00

store.scm

gexp: ‘with-parameters’ properly handles ‘%graft?’.

2025-03-05 00:28:49 +01:00

substitutes.scm

guix: Avoid ‘fdatasync’ call for caches and regular files.

2025-04-14 17:31:50 +02:00

svn-download.scm

gnu: Remove subversion/pinned.

2025-11-27 14:22:24 +01:00

swh.scm

swh: Catch swh-error when downloading from SWH Vault.

2025-07-17 16:41:28 +02:00

tests.scm

tests: Increase test timeout and honor ‘GUIX_TESTS_BUILD_TIMEOUT’.

2025-10-17 12:23:54 +02:00

transformations.scm

gnu: go-1.23: Add aarch64 micro-architecture compiler support.

2025-08-06 12:02:52 +03:00

ui.scm

ui: Change module import suggestion string.

2025-11-24 23:22:52 +01:00

upstream.scm

upstream: Do not update to same version.

2025-04-27 13:01:48 +01:00

utils.scm

utils: Define 'target-hurd32?' predicate.

2025-11-03 17:18:38 +01:00

workers.scm

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