Kyle Andrews c6d043f8f5 build-system/r: Use %BIOCONDUCTOR-VERSION. ...

* guix/build-system/r.scm (bioconductor-uri): Accept optional RELEASE
argument, defaulting to %BIOCONDUCTOR-VERSION from (guix import cran).
(default-bioc-version): New procedure.

Change-Id: I5949cd5c01120a2cdeccb522c2d7b2ebb64cb362

2026-02-14 10:18:25 +01:00

..

build

build-system: mix: Set deterministic compiler option.

2026-02-11 10:16:23 +01:00

build-system

build-system/r: Use %BIOCONDUCTOR-VERSION.

2026-02-14 10:18:25 +01:00

import

utils/git-origin: Fix generated sexp when #:recursive? is #t.

2026-02-11 17:40:23 +09:00

platforms

…

scripts

scripts: substitute: Default to fast decompression.

2026-01-28 17:45:33 +00:00

store

ssh: Do not default to port 22 (let guile-ssh do it).

2025-10-06 10:30:33 +02:00

tests

tests: don't use 'file://...' URIs for testing git downloads.

2025-10-12 22:22:01 +02:00

android-repo-download.scm

…

avahi.scm

…

base16.scm

…

base32.scm

…

base64.scm

…

build-system.scm

build-system: Introduce @* macro for lazy module resolution.

2025-09-04 12:19:55 +02:00

bzr-download.scm

Reapply "Update Maxim's email address."

2025-09-18 13:44:12 +09:00

cache.scm

…

channels.scm

channels: Export channel-reference.

2025-09-23 11:13:22 +02:00

ci.scm

…

colors.scm

…

combinators.scm

…

config.scm.in

…

cpio.scm

…

cpu.scm

guix: cpu: Recognize CPUs through GCC-15.

2025-08-06 12:02:52 +03:00

cve.scm

cve: Assume that ‘criteria’ is always defined.

2025-10-06 10:40:13 +02:00

cvs-download.scm

cvs-download: Implement SWH fallback.

2025-10-01 10:30:00 +02:00

d3.v3.js

…

deprecation.scm

…

derivations.scm

…

describe.scm

describe: Define and use ‘modules-from-current-profile’.

2026-01-25 21:17:44 +01:00

diagnostics.scm

Revert "guix: diagnostics: Export 'info' as replacement."

2025-12-07 21:59:52 +01:00

discovery.scm

…

docker.scm

docker: Add powerpc64le/s390x mappings.

2025-12-07 22:11:45 +01:00

download.scm

guix: download: Add mirrors for Qt5.

2025-10-29 19:48:30 +01:00

elf.scm

Revert "elf: Remove bundled Guile source."

2025-10-30 16:19:49 +09:00

ftp-client.scm

…

gexp.scm

gexp: Add 'delayed-object'.

2026-02-10 23:46:34 +01:00

git-authenticate.scm

git-authenticate, inferior: Autoload Git modules.

2026-01-25 21:17:43 +01:00

git-download.scm

Reapply "Update Maxim's email address."

2025-09-18 13:44:12 +09:00

git.scm

git: Guard against git submodules lacking a path.

2026-01-13 12:22:52 +09:00

glob.scm

Update Giacomo's email address.

2025-12-03 14:38:09 +09:00

gnu-maintenance.scm

gnu-maintenance: ‘generic-html’ recognizes ‘release-file-regexp’ property.

2025-11-18 13:05:49 +01:00

gnupg.scm

guix: Spelling corrections.

2026-01-14 09:16:46 +01:00

grafts.scm

Revert "elf: Remove bundled Guile source."

2025-10-30 16:19:49 +09:00

graph.js

…

graph.scm

graph: graphml backend: simplification

2025-11-27 13:03:52 +01:00

hash.scm

…

hg-download.scm

gnu: Remove mercurial/pinned.

2025-11-27 14:22:24 +01:00

http-client.scm

http-client: Include EPIPE in network-error?.

2026-01-28 17:44:57 +00:00

i18n.scm

…

inferior.scm

inferior: Allow caching of unauthenticated channels.

2026-02-07 17:00:12 +01:00

ipfs.scm

…

least-authority.scm

…

licenses.scm

licenses: Add Academic Free License v3.0.

2026-01-25 21:25:47 +01:00

lint.scm

guix: lint: Check python-pynose inputs instead of python-nose.

2026-02-12 13:23:26 +00:00

man-db.scm

Reapply "Update Maxim's email address."

2025-09-18 13:44:12 +09:00

memoization.scm

…

modules.scm

…

monad-repl.scm

monad-repl: Add "graft?" command.

2025-12-19 00:05:43 +01:00

monads.scm

…

nar.scm

…

narinfo.scm

…

openpgp.scm

…

packages.scm

guix: Spelling corrections.

2026-01-14 09:16:46 +01:00

pki.scm

pki: Always make /etc/guix/acl world-readable.

2025-07-16 23:50:38 +02:00

platform.scm

describe: Define and use ‘modules-from-current-profile’.

2026-01-25 21:17:44 +01:00

profiles.scm

profiles: package->manifest-entry: Filter packages.

2025-11-03 20:06:14 +08:00

profiling.scm

…

progress.scm

…

quirks.scm

…

read-print.scm

…

records.scm

records: ‘match-record’ throws a well-formed ’wrong-type-arg’ exception.

2025-10-06 11:06:31 +02:00

remote-procedures.scm

store: Move low-level protocol bit-twiddling to (guix remote-procedures).

2026-01-27 12:58:18 +01:00

remote.scm

…

repl.scm

…

rpm.scm

Reapply "Update Maxim's email address."

2025-09-18 13:44:12 +09:00

scripts.scm

…

search-paths.scm

Reapply "Update Maxim's email address."

2025-09-18 13:44:12 +09:00

self.scm

self: Install AppArmor profile.

2025-12-22 22:48:59 +01:00

serialization.scm

serialization: Do not require ‘bytevector-slice’.

2026-01-29 11:50:35 +01:00

sets.scm

…

ssh.scm

ssh: Add 'none' to compression for dropbear compatibility.

2026-01-09 15:22:44 +01:00

status.scm

Reapply "Update Maxim's email address."

2025-09-18 13:44:12 +09:00

store.scm

store: Make derivation-path? use direct-store-path?.

2026-02-10 11:36:16 +01:00

substitutes.scm

substitutes: Handle closing connections to substitute servers.

2026-01-28 17:44:57 +00:00

svn-download.scm

gnu: Remove subversion/pinned.

2025-11-27 14:22:24 +01:00

swh.scm

swh: Catch swh-error when downloading from SWH Vault.

2025-07-17 16:41:28 +02:00

tests.scm

tests: Increase test timeout and honor ‘GUIX_TESTS_BUILD_TIMEOUT’.

2025-10-17 12:23:54 +02:00

transformations.scm

transformations: Fix recursive?' inheritance for with-git-url'.

2026-01-29 13:51:06 +09:00

ui.scm

Merge branch 'version-1.5.0'

2026-01-22 13:27:13 +01:00

upstream.scm

describe: Define and use ‘modules-from-current-profile’.

2026-01-25 21:17:44 +01:00

utils.scm

utils: Define 'target-hurd32?' predicate.

2025-11-03 17:18:38 +01:00

workers.scm

…