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gnu: Remove vbz-compression.

* gnu/packages/bioinformatics.scm (vbz-compression): Delete variable.

Fixes: guix/guix#3640
Change-Id: I996c211af44a7342cb83249c0a9347f11d324069
This commit is contained in:
Andreas Enge
2025-11-18 17:52:28 +01:00
parent 7564f8620a
commit 1d739bcc15

View File

@@ -22207,43 +22207,6 @@ datasets to ascertain that it achieves high sensitivity and specificity in
multiple experimental contexts.")
(license license:expat)))
(define-public vbz-compression
(package
(name "vbz-compression")
(version "1.0.13")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/nanoporetech/vbz_compression/")
(commit version)
;; We include the streamvbyte sources
(recursive? #true)))
(file-name (git-file-name name version))
(sha256
(base32
"1jf5i5v0h58s7w6rhgi4w1vvxnk9jzbgmiic14d48ngr204m0w5c"))))
(build-system cmake-build-system)
(arguments
`(#:configure-flags
'("-DENABLE_CONAN=OFF"
;; Python things aren't even installed, so we might as well
;; disable building them.
"-DENABLE_PYTHON=OFF")))
(inputs
(list ;("hdf5" ,hdf5-1.10)
`(,zstd "lib")))
(native-inputs
(list googlebenchmark))
(home-page "https://github.com/nanoporetech/vbz_compression/")
(synopsis "VBZ compression plugin for nanopore signal data")
(description
"VBZ Compression uses variable byte integer encoding to compress
nanopore signal data. The performance of VBZ is achieved by taking
advantage of the properties of the raw signal and therefore is most
effective when applied to the signal dataset.")
(license license:mpl2.0)))
(define-public tbsp
(let ((commit "dc30c03868233c5504299c9cb0d7b2064ba9cb41")
(revision "2"))