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gnu: rcas-web: Update to 0.2.0.

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* gnu/packages/bioinformatics.scm (rcas-web): Update to 0.2.0.
[inputs]: Add r-biocmanager.

Change-Id: I8ddf52180700ca917e75e099378c4fe9a7cdd9bb
This commit is contained in:
Ricardo Wurmus
2026-02-09 11:55:22 +01:00
parent 07ba811e89
commit 1e7fdebe25
1 changed files with 46 additions and 47 deletions
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93
gnu/packages/bioinformatics.scm
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@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2014-2025 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2014-2026 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2017, 2018 Ben Woodcroft <donttrustben@gmail.com>
;;; Copyright © 2015, 2016, 2018, 2019, 2020 Pjotr Prins <pjotr.guix@thebird.nl>
;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
@@ -15077,53 +15077,52 @@ characteristic tag shift values in these assays.")
(license license:bsd-3))))
(define-public rcas-web
(let ((commit "71c93e3835653beb4eaa6e89b860bee3779729b8")
(revision "2"))
(package
(name "rcas-web")
(version (git-version "0.1.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/BIMSBbioinfo/rcas-web")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"0232g0f7g0w5cgaib462zbfssvfq8i0iqv5b5wfmbrbn0sw99l9a"))))
(build-system gnu-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(add-after 'install 'wrap-executable
(lambda* (#:key inputs outputs #:allow-other-keys)
(let* ((json #$(this-package-input "guile-json"))
(redis #$(this-package-input "guile-redis"))
(path (string-append
json "/share/guile/site/3.0:"
redis "/share/guile/site/3.0")))
(wrap-program (string-append #$output "/bin/rcas-web")
`("GUILE_LOAD_PATH" ":" = (,path))
`("GUILE_LOAD_COMPILED_PATH" ":" = (,path))
`("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE"))))))))))
(inputs
(list bash-minimal
r-minimal
r-rcas
guile-3.0
guile-json-4
guile-redis))
(native-inputs
(list autoconf
automake
pkg-config))
(home-page "https://github.com/BIMSBbioinfo/rcas-web")
(synopsis "Web interface for RNA-centric annotation system (RCAS)")
(description "This package provides a simple web interface for the
(package
(name "rcas-web")
(version "0.2.0")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/BIMSBbioinfo/rcas-web")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"0n1mh1132dx0y0ln2rhdy02rssyzp2xa2im5ynzjpnxxw0r6fgip"))))
(build-system gnu-build-system)
(arguments
(list
#:phases
#~(modify-phases %standard-phases
(add-after 'install 'wrap-executable
(lambda* (#:key inputs outputs #:allow-other-keys)
(let* ((json #$(this-package-input "guile-json"))
(redis #$(this-package-input "guile-redis"))
(path (string-append
json "/share/guile/site/3.0:"
redis "/share/guile/site/3.0")))
(wrap-program (string-append #$output "/bin/rcas-web")
`("GUILE_LOAD_PATH" ":" = (,path))
`("GUILE_LOAD_COMPILED_PATH" ":" = (,path))
`("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE"))))))))))
(inputs
(list bash-minimal
r-minimal
r-rcas
r-biocmanager
guile-3.0
guile-json-4
guile-redis))
(native-inputs
(list autoconf
automake
pkg-config))
(home-page "https://github.com/BIMSBbioinfo/rcas-web")
(synopsis "Web interface for RNA-centric annotation system (RCAS)")
(description "This package provides a simple web interface for the
@dfn{RNA-centric annotation system} (RCAS).")
(license license:agpl3+))))
(license license:agpl3+)))
(define-public r-chipkernels
(let ((commit "c9cfcacb626b1221094fb3490ea7bac0fd625372")