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gnu: r-biomart: Replace custom phase with SKIPPED-TESTS argument.
* gnu/packages/bioconductor.scm (r-biomart)[arguments]: Remove phase 'delete-bad-tests; specify #:skipped-tests instead. Change-Id: I98c167685c07453fd8fa8b8c7700c21591d043af
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@@ -8654,20 +8654,22 @@ on Bioconductor or which replace R functions.")
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(build-system r-build-system)
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(arguments
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(list
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#:phases
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'(modify-phases %standard-phases
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(add-after 'unpack 'delete-bad-tests
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(lambda _
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;; These tests attempt to download files.
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(for-each delete-file
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'("tests/testthat/test_ensemblFunctions.R"
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"tests/testthat/test_ensemblGenomes.R"
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"tests/testthat/test_getBM.R"
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"tests/testthat/test-getGene.R"
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"tests/testthat/test_utilityFunctions.R"
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"tests/testthat/test_z_cache.R"
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;; This produces unexpected warnings.
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"tests/testthat/test_ensembl_ssl_settings.R")))))))
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#:skipped-tests
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'(("test_ensembl_ssl_settings.R"
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;; This produces unexpected warnings.
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"SSL settings are stored in the cache")
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;; These tests attempt to download files.
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("test_ensemblFunctions.R"
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"useEnsembl\\(\\) error handling is OK"
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"useEnsembl\\(host = \\) is not necessary for ensembl.org"
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"Ensembl URLs are constructed correctly")
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("test_getBM.R"
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"getBM returns sensible things"
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"getBM doesn't convert T/F alleles into TRUE/FALSE")
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("test-getGene.R"
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"getGene\\(\\) recognizes new ensembl name as ensembl")
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;; Code run outside of testthat accesses www.ensembl.org
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"test_z_cache.R")))
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(propagated-inputs
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(list r-annotationdbi
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r-biocfilecache
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