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gnu: r-chippeakanno: Replace custom phase with SKIPPED-TESTS argument.

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* gnu/packages/bioconductor.scm (r-chippeakanno)[arguments]: Remove phase
'disable-bad-tests; specify #:skipped-tests instead.

Change-Id: Id7e7cd02d1b0b02f62022b9d55e69c867200e213
This commit is contained in:
Ricardo Wurmus
2026-04-04 23:57:50 +02:00
parent 722538254e
commit b77880875b
1 changed files with 5 additions and 9 deletions
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14
gnu/packages/bioconductor.scm
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@@ -16342,15 +16342,11 @@ determining dependencies between variables, code improvement suggestions.")
(build-system r-build-system)
(arguments
(list
#:phases
'(modify-phases %standard-phases
(add-after 'unpack 'disable-bad-tests
(lambda _
;; "sequence MT not found", but it's probably because it tries to
;; access the Internet earlier
(substitute* "tests/testthat/test_getAllPeakSequence.R"
((".*getAllPeakSequence works not correct.*" m)
(string-append m "skip('guix')\n"))))))))
#:skipped-tests
;; "sequence MT not found", but it's probably because it tries to access
;; the Internet earlier
'(("test_getAllPeakSequence.R"
"getAllPeakSequence works not correct"))))
(propagated-inputs
(list r-annotationdbi
r-biocgenerics