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0a414ebdf7c66eebfd22bed2de89a1d1b9e8a566
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165585 Commits

Author SHA1 Message Date
Sharlatan Hellseher
0a414ebdf7 gnu: python-paramz: Use python-numpy@1. 
* gnu/packages/python-science.scm (python-paramz):
[propagated-inputs]: Remove python-numpy; add python-numpy-1.

Change-Id: Ibc355d9a6e1ab635f63c21fe5e068a0ddfcc906a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:25 +01:00
Sharlatan Hellseher
b54008bb08 gnu: rdkit: Use python-numpy@1. 
* gnu/packages/chemistry.scm (rdkit)[propagated-inputs]: Remove
python-numpy; add python-numpy-1.

Change-Id: Iab529bb547832bd56040cf4ea1cc414b14c37dd2
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:24 +01:00
Sharlatan Hellseher
0c9929cba8 gnu: boost-numpy: Use python-numpy@1. 
* gnu/packages/boost.scm (boost-numpy)[native-inputs]: Remove
python-numpy; add python-numpy-1.

Change-Id: I4ee9b625c69951099929873f2f7bbd7a7d0f6e29
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:24 +01:00
Sharlatan Hellseher
9de58fc285 gnu: python-scikit-learn-1.6: Skip 3 more tests. 
* gnu/packages/machine-learning.scm (python-scikit-learn-1.6)[arguments]
<test-flags>: Skip 3 more tests.

Change-Id: I1c7e2eb7c18ddc5479cf45b84a6cf07d374842fe
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:23 +01:00
Sharlatan Hellseher
a22c6e5a0d gnu: python-vector: Update to 1.7.0. 
* gnu/packages/python-science.scm (python-vector): Update to 1.7.0.
[propagated-inputs]: Add python-awkward, python-numba, and python-sympy.
[native-inputs]: Remove python-awkward and python-sympy; add python-notebook,
python-optree, and python-papermill.

Change-Id: I760c26d69b5a5e4530e80d8e57af65db2fdf319f
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:22 +01:00
Sharlatan Hellseher
783da5d08c gnu: python-papermill: Reduce closure size; skip 2 tests. 
The most of the native inputs were there to tests ignored tests, they
are removed now to reduce closure size.

* gnu/packages/jupyter.scm (python-papermill):
[arguments] <test-flags>: Skip 2 failing tests.
[native-inputs]: Remove python-boto3, python-botocore, python-ipython,
python-ipywidgets, python-moto, and python-requests.

Change-Id: I4c07a024a9514a44b5819196754e44ee86d47883
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:21 +01:00
Sharlatan Hellseher
acf979160c gnu: python-glue-qt: Relax requirements for ipython version. 
* gnu/packages/astronomy.scm (python-glue-qt):
[phases]{relax-requirements}: New phase.

Change-Id: I25ede5ae073ff7e5d568e99b29b15a95008a696f
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:20 +01:00
Sharlatan Hellseher
d47b0599a8 gnu: Remove python-xarray-datatree. 
* gnu/packages/python-science.scm (python-xarray-datatree): Delete variable.

Fixes: guix/guix#5348
Change-Id: I7150cbe534f900286fb575f5883d9fe0980aa975
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:20 +01:00
Sharlatan Hellseher
d1a8c4e9e9 gnu: python-multiscale-spatial-image: Update to 2.0.3. 
* gnu/packages/python-science.scm (python-multiscale-spatial-image): Update to 2.0.3.
[propagated-inputs]: Remove quasiquote and ((unquote insight-toolkit) "python"); add
python-dask, python-numpy, python-dateutil, python-spatial-image,
python-xarray, python-xarray-dataclass, and python-zarr.
[native-inputs]: Remove python-fsspec, python-ipfsspec, python-jsonschema,
python-nbmake, python-pooch, python-pytest, python-pytest-mypy,
python-urllib3, and python-zarr.

Change-Id: I22f93379f92da785f851c17d149745ea9124a999
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:19 +01:00
Sharlatan Hellseher
7f0bd3f662 gnu: Add python-xarray-dataclass. 
* gnu/packages/python-science.scm (python-xarray-dataclass): New variable.

Change-Id: Id4293a97741704c434b6847b7b1ede8d35dd1edd
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:18 +01:00
Sharlatan Hellseher
561736d94d gnu: python-fenics-ffc: Use python-numpy@1. 
* gnu/packages/simulation.scm (python-fenics-ffc):
[propagated-inputs]: Add python-numpy-1.

Change-Id: I57a991c70947babc1734660c1d6723789ef77466
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:17 +01:00
Sharlatan Hellseher
065980a401 gnu: python-fenics-ufl-2019: Use python-numpy@1. 
* gnu/packages/simulation.scm (python-fenics-ufl-2019):
[inputs]: Remove python-numpy.
[propagated-inputs]: Add python-numpy-1

Change-Id: I3171b24924f08a6210504ee03b3726a18609b186
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:16 +01:00
Sharlatan Hellseher
9769cd732c gnu: python-episcanpy: Use python-numpy@1. 
* gnu/packages/bioinformatics.scm (python-episcanpy):
[propagated-inputs]: Remove python-numpy; add python-numpy-1.
[native-inputs]: Remove python-pytest and python-wheel; add
python-setuptools.

Change-Id: I896e2e9c44383d71ad4cea3ca7e4f445999f5842
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:16 +01:00
Sharlatan Hellseher
b6081f0be5 gnu: python-utilities-awetzel: Remove relax-requirements phase. 
* gnu/packages/astronomy.scm (python-utilities-awetzel):
[phases]{relax-requirements}: Remove phase.

Change-Id: I00ac6703449056eefd27e3b0ceb60499c5a9fdcb
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:15 +01:00
Sharlatan Hellseher
bd11aa5b67 gnu: python-specreduce: Remove relax-requirements phase. 
* gnu/packages/astronomy.scm (python-specreduce):
[phases]{relax-requirements}: Remove phase.

Change-Id: Ibf28ad731ffcffda538b6ab0499774be36b666ea
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:14 +01:00
Sharlatan Hellseher
90101deabb gnu: python-sncosmo: Adjust phases. 
* gnu/packages/astronomy.scm (python-sncosmo):
[phases]{relax-requirements, prepare-test-environment}: Remove phases.
{pre-check}: New phase, do not re-build extension just remove local
source to reduce compute time.
[native-inputs]: Remove python-wheel; add python-iminuit and
python-pytest-xdist.

Change-Id: I3b8642b1a55a1563640b1a5306614f2cb9ec5c2a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:13 +01:00
Sharlatan Hellseher
6cb925c92b gnu: python-sep: Remove relax-requirements phase. 
* gnu/packages/astronomy.scm (python-sep):
[phases]{relax-requirements}: Remove phase.
[native-inputs]: Remove python-wheel.

Change-Id: Ifb16d132624f1fb3c9b578e6644fda5ee524745b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:12 +01:00
Sharlatan Hellseher
393388cdd2 gnu: python-gizmo-analysis: Remove relax-requirements phase. 
* gnu/packages/astronomy.scm (python-gizmo-analysis):
[phases]{relax-requirements}: Remove phase.

Change-Id: Id35c2554efe5dcdf84fd0bcbc947e3017e345646
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:12 +01:00
Sharlatan Hellseher
2a45091b75 gnu: python-drizzlepac: Update to 3.10.0-0.e01563c. 
* gnu/packages/astronomy.scm (python-drizzlepac): Update to
e01563c48206f02f4cd4c525732764b9b827b3c4 commit.
[source]: Switch to git-fetch.
[phases]{set-version}: New phase.
[propagated-inputs]: Remove python-markupsafe, python-pypdf2,
python-regions, and python-tables; add python-pypdf and python-stregion.
[native-inputs]: Remove python-astropy and python-wheel; add
python-markupsafe.

Change-Id: I623f369b763d741405a6f25ed455466d009cb3d5
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:11 +01:00
Sharlatan Hellseher
b5a17d721a gnu: Add python-stregion. 
* gnu/packages/astronomy.scm (python-stregion): New variable.

Change-Id: Ic3854a54498e628ead422eba5b223773c700c98b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:10 +01:00
Sharlatan Hellseher
02c6d0183f gnu: python-drep: Update to 3.6.2-0.7b4b8fb. 
* gnu/packages/bioinformatics.scm (python-drep): Update to
7b4b8fbf9dfdfef61caf949f1aa1d4fc3be61d5a commit.
[source]: Switch to git-fetch providing tests.
[arguments] <test-flags>: Skip some tests requiring not available
optional packages.
[build-system]: Switch to pyproject-build-system.
[propagated-inputs]: Remove python-pytest; add python-networkx.
[native-inputs]: Add mash, python-pytest, and python-setuptools.

Change-Id: I5e22f7c142e267592b2ed74cf1c1d37a02472992
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:09 +01:00
Sharlatan Hellseher
38b8260a4d gnu: python-mygene: Switch to pyproject. 
* gnu/packages/bioinformatics.scm (python-mygene):
[source]: Switch to git-fetch.
[build-system]: Switch to pyproject-build-system.
[native-inputs]: Add python-setuptools.

Change-Id: Ieb062c8dc8f8e2a8cede4b5d1bb816ec9d9d10db
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:08 +01:00
Sharlatan Hellseher
9448d50d2c gnu: python-funsor: Update to 0.4.6. 
* gnu/packages/machine-learning.scm (python-funsor): Update to 0.4.6.
[source]: Switch to git-fetch providing a fresh version.
[arguments] <test-flags>: Run tests in parallel, supported upstream;
skip more problematic tests.
[propagated-inputs]: Remove python-numpy; add python-numpy-1,
python-pyro-ppl, and python-pytorch.
[native-inputs]: Add python-pytest-xdist.

Change-Id: I6a82951485324e465c93aec07b4f98ef632ebae3
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:08 +01:00
Sharlatan Hellseher
8c36020e02 gnu: python-deeptools: Update to 3.5.6. 
* gnu/packages/bioinformatics.scm (python-deeptools): Update to 3.5.6.
[arguments] <test-flags>: Skip one test.
<phases>: Remove 'fix-test.
[native-inputs]: Remove python-wheel.

Change-Id: I233b272ee06ab6c290c11a6875961de0fe52b8e8
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:07 +01:00
Sharlatan Hellseher
c2aabd9cff gnu: python-deepdish: Use python-numpy@1. 
* gnu/packages/python-science.scm (python-deepdish):
[propagated-inputs]: Remove python-numpy; add python-numpy-1.
[native-inputs]: Remove python-wheel.

Change-Id: I8c4e2bd6538411df0f33d05b80fe178690fcc4d8
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:06 +01:00
Sharlatan Hellseher
6a72d3c12f gnu: python-tdda: Skip one more test. 
* gnu/packages/python-science.scm (python-tdda):
[arguments] <test-flags>: Skip one more test.
[native-inputs]: Remove python-wheel.

Change-Id: I1bcb5223627945d580d64e911cd73cf2da06287a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:05 +01:00
Sharlatan Hellseher
b80dbd7d43 gnu: piglit: Use python-numpy@1. 
* gnu/packages/gl.scm (piglit):
[inputs]: Remove python-numpy; add python-numpy-1.

Change-Id: I9d8975ebaff57e56fe293b7f2c6f5c86aa181115
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:04 +01:00
Sharlatan Hellseher
80ccda6a0b gnu: cnvkit: Update to 0.9.12-0.52f367b. 
* gnu/packages/bioinformatics.scm (cnvkit): Update to
52f367bd0edbf55cabaaa2fbcf68c8742dc97b4c commit.
[native-inputs]: Remove python-wheel.

Change-Id: I1d26ac113414b0d6428678b61acefa058d0af6f7
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:04 +01:00
Sharlatan Hellseher
4a9ba2e094 gnu: python-pyfaidx: Update to 0.9.0.3. 
* gnu/packages/bioinformatics.scm (python-pyfaidx): Update to 0.9.0.3.
[arguments] <tests?>: Disable for now.
<phases>: Remove 'fix-version; add 'set-version.
[propagated-inputs]: Remove python-setuptools; add python-packaging.
[native-inputs]: Remove libc-utf8-locales-for-target; add
python-biopython, python-fsspec, python-numpy, python-pytest,
python-setuptools, and python-setuptools-scm.

Change-Id: I49e95f8e1b19a181d4d1b2e344cf1a00b055eefd
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:03 +01:00
Sharlatan Hellseher
5bddbae693 gnu: python-pomegranate: Move to machine-learning. 
* gnu/packages/python-xyz.scm (python-pomegranate): Move from here ...
* gnu/packages/machine-learning.scm: ... to here.

Change-Id: I1ef53f52439c0cae22e96ec381ecff3e2f616d71
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:02 +01:00
Sharlatan Hellseher
d4ebd06e80 gnu: python-pomegranate: Update to 1.1.0. 
* gnu/packages/python-xyz.scm (python-pomegranate): Update to 1.1.0.
[source]: Switch to git-fetch providing tests.
[arguments] <tests?, test-flags>: Enable them.
[propagated-inputs]: Remove python-joblib and python-pyyaml; add
python-apricot-select, python-scikit-learn, and python-pytorch.
[native-inputs]: Remove python-pandas and python-wheel; add
python-pytest.

Change-Id: Idf53aff2124c98fd7dc1172a31028a57347d2a4b
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:01 +01:00
Sharlatan Hellseher
e0ee924579 gnu: Add python-apricot-select. 
* gnu/packages/machine-learning.scm (python-apricot-select): New variable.

Change-Id: Ib4e7b76e4025870e73a52d67277f8bc302740d01
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:00 +01:00
Sharlatan Hellseher
80ea353362 gnu: python-presto: Improve package, fix tests. 
* gnu/packages/bioinformatics.scm (python-presto): Refresh package style.
[arguments] <test-flags>: Skip 3 tests.
[native-inputs]: Remove python-wheel.

Change-Id: I5992e127fd653aa04711647cf0a458586029b3d4
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:21:00 +01:00
Sharlatan Hellseher
8cd522db2b gnu: python-brian2: Update to 2.10.1. 
* gnu/packages/machine-learning.scm (python-brian2): Update to 2.10.1.
[arguments] <test-flags>: Run portion of tests.
<phases>: Use default 'check; add 'relax-requirements.
[propagated-inputs]: Remove python-py-cpuinfo; add python-packaging.
[native-inputs]: Remove python-wheel; add python-pytest-timeout and
python-setuptools-scm.

Fixes: guix/guix#2568
Change-Id: Iad4d1bc211069fccbec7eb9b0082bf2ea73c8e41
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:59 +01:00
Sharlatan Hellseher
64714dcd17 gnu: macs-3: Update to 3.0.3. 
* gnu/packages/bioinformatics.scm (macs-3): Update to 3.0.3.
[arguments, properties]: Drop all.
[native-inputs]: Remove python-wheel.

Change-Id: Ida52036ce3305d1db67f27f98cbc0d48c1f9650a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:58 +01:00
Sharlatan Hellseher
940fd33cad gnu: python-cellbender: Update to 0.3.2. 
* gnu/packages/bioinformatics.scm (python-cellbender): Update to 0.3.2.
[arguments] <phases>: Add 'relax-requirements.
[propagated-inputs]: Remove python-scikit-learn, python-sphinx,
python-sphinx-argparse, python-sphinx-autodoc-typehints,
python-sphinx-rtd-theme, and python-sphinxcontrib-programoutput; add
python-loompy, python-lxml-html-clean, python-nbconvert,
python-notebook, python-psutil, and python-pytorch.
[native-inputs]: Add python-setuptools.

Change-Id: I79473da4ca33b648fd9bd19f21dc91edb4a12cc3
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:57 +01:00
Sharlatan Hellseher
c94d575576 gnu: python-captum: Update to 0.8.0-0.4fade3a. 
* gnu/packages/machine-learning.scm (python-captum): Update to
4fade3af8dc398c1f96b193c969565aad23aedf5 commit.
[propagated-inputs]: Add python-openai.

Change-Id: Ic51de929ac28f565244b7aec93b9b2be7211fb02
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:56 +01:00
Sharlatan Hellseher
8364dce5fd gnu: mageck: Use python-numpy@1. 
* gnu/packages/bioinformatics.scm (mageck):
[inputs]: Remove python-numpy; add python-numpy-1.
[native-inputs]: Remove python-wheel; add python-setuptools.

Change-Id: If26cf31016b769b01d502c33b97c5579873337b6
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:55 +01:00
Sharlatan Hellseher
69988a0d63 gnu: idr: Fix build. 
* gnu/packages/bioinformatics.scm (idr):
[propagated-inputs]: Use python-numpy-1.
[native-inputs]: Use python-cython-0.

Change-Id: Ic1fabb53311a74db3872f50c2f67f8e1310be204
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:55 +01:00
Sharlatan Hellseher
dcc7504145 gnu: python-cnmf: Update to 1.7.0. 
* gnu/packages/bioinformatics.scm (python-cnmf): Update to 1.7.0.
[arguments] <tests?, test-flags>: Enable them.
[native-inputs]: Remove python-wheel; add python-pytest.

Change-Id: I927b10045e563cc81bcb077f3af9ba3312869280
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:54 +01:00
Sharlatan Hellseher
db7594b1fc gnu: python-cooltools: Update to 0.7.1. 
* gnu/packages/bioinformatics.scm (python-cooltools): Update to 0.7.1.
[arguments] <phases>: Add 'fix-pytest-config.
[native-inputs]: Add python-setuptools.

Change-Id: I1a5c03cc626c1401f1a6b34f7af13d2a259e74a3
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:53 +01:00
Sharlatan Hellseher
f7c56e273e gnu: python-magic-impute: Update to 3.0.0. 
* gnu/packages/bioinformatics.scm (python-magic-impute): Update to 3.0.0.
[arguments] <tests?, test-flags>: Enable them.
[native-inputs]: Add python-pytest and python-setuptools.
[propagated-inputs]: Add python-scprep.

Change-Id: I4e1567fc6b5b32ee77f13d801042ea321f33dfa8
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:52 +01:00
Sharlatan Hellseher
a7c487a04a gnu: Add python-scprep. 
* gnu/packages/bioinformatics.scm (python-scprep): New variable.

Change-Id: I61674e690bf798c17e84806b606673f84bd07636
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:46 +01:00
Sharlatan Hellseher
dac41e9f25 gnu: python-fcsparser: Use python-numpy@1. 
* gnu/packages/bioinformatics.scm (python-fcsparser):
[propagated-inputs]: Remove python-numpy; add python-numpy-1.

Change-Id: I2a069293821b769aa981c15ccbc5c96cde5a497a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:20 +01:00
Sharlatan Hellseher
0bf1c3acae gnu: python-graphtools: Update to 2.1.0. 
* gnu/packages/graph.scm (python-graphtools): Update to 2.1.0.
[arguments]<phases>: Remove 'patch-tets; use default 'check; add
'fix-pytest-config.
[native-inputs]: Remove util-linux, python-pynose, and python-nose2; add
python-pytest and python-setuptools.

Change-Id: If5561d5c4de1a9c78e7d4baa7011bd0ad622c4ef
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:19 +01:00
Sharlatan Hellseher
193c758ca6 gnu: python-pygsp: Update to 0.6.0. 
* gnu/packages/graph.scm (python-pygsp): Update to 0.6.0.
[source] <pypi-uri>: Fix name.
[arguments] <test-flags>: Rework skipped tests.
<phases>: Remove 'disable-doctets.
[propagated-inputs]: Remove python-scikit-image.
[native-inputs]: Remove python-coverage, python-coveralls, and
python-flake8; add python-matplotlib, python-pyunlocbox,
python-scikit-image, and python-setuptools.

Change-Id: Ic2ef43e47967897e2d7df7e628a8d02ff7684360
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:18 +01:00
Sharlatan Hellseher
8aa80ded78 gnu: Add python-pyunlocbox. 
* gnu/packages/graph.scm (python-pyunlocbox): New variable.

Change-Id: I0281d2e1cfa4ad61a64e168f2c70344afd96ad3a
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:17 +01:00
Sharlatan Hellseher
1cc6355303 gnu: python-verde: Update to 1.8.1. 
* gnu/packages/geo.scm (python-verde): Update to 1.8.1.
[arguments] <test-flag>: Skip one more test.
[propagated-inputs]: Add python-pykdtree and python-numba.
[native-inputs]: Remove python-wheel; add python-matplotlib and
python-pytest-mpl.

Change-Id: Iaeefd5f40cb553fd0c76556663279f75aa7917ad
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:16 +01:00
Sharlatan Hellseher
9d51f4ba01 gnu: python-metacells: Simplify. 
* gnu/packages/bioinformatics.scm (python-metacells):
[arguments] <phases>: Merge 'set-numba-cache-dir and 'build-extension
into 'pre-check and just remove local source to prevent rebuilding
expansions for tests, it saves some compute time with the same output.
[native-inputs]: Add pybind11.

Change-Id: I95e6706813cc5d3167593440c714c5091303cb00
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:16 +01:00
Sharlatan Hellseher
bbc241a1a4 gnu: python-crosshair: Update to 0.0.101. 
* gnu/packages/python-check.scm (python-crosshair): Update to 0.0.101.
[arguments] <test-flags>: Rework skipped tests, pass more.
<phases>: Remove 'fix-dependencies; add 'relax-requirements.
[native-inputs]: Remove python-wheel.
[propagated-inputs]: Add python-pygls.

Change-Id: I5b9c84d165c09ce62d364dbbd2da7108dc2eda1c
Signed-off-by: Rutherther <rutherther@ditigal.xyz>
 2026-01-25 21:20:15 +01:00