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Author SHA1 Message Date
Ricardo Wurmus 8241a94bb1 gnu: r-oligo: Update to 1.74.0. 
* gnu/packages/bioconductor.scm (r-oligo): Update to 1.74.0.

Change-Id: Id0f05df5371953b337d758f2a33642675bdb0f38
 2025-11-29 12:20:58 +01:00
Ricardo Wurmus a129044714 gnu: r-oligoclasses: Update to 1.72.0. 
* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.72.0.

Change-Id: Ibab80dd87ea17077a2f43d5cf76e26b8b0b5cd39
 2025-11-29 12:20:58 +01:00
Ricardo Wurmus bed3d1ca07 gnu: r-geneplotter: Update to 1.88.0. 
* gnu/packages/bioconductor.scm (r-geneplotter): Update to 1.88.0.

Change-Id: Ia52603104d83954fe2854427ad2465de314c0e9c
 2025-11-29 12:20:58 +01:00
Ricardo Wurmus 59ae731c75 gnu: r-zellkonverter: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.20.0.
[propagated-inputs]: Add r-sparsearray.

Change-Id: I99b02681bb21d80f13156c2c7fbb86d03aee0324
 2025-11-29 12:20:58 +01:00
Ricardo Wurmus 64dadad94e gnu: r-xvector: Update to 0.50.0. 
* gnu/packages/bioconductor.scm (r-xvector): Update to 0.50.0.

Change-Id: I6d0456637ada50062c4a5a646ad61da359ba3389
 2025-11-29 12:20:57 +01:00
Ricardo Wurmus 75426d57c7 gnu: r-xmapbridge: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-xmapbridge): Update to 1.68.0.

Change-Id: Idc15d0fb05fc950ae36d26cceab840ac418570cd
 2025-11-29 12:20:57 +01:00
Ricardo Wurmus 15e079259c gnu: r-xina: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-xina): Update to 1.28.0.

Change-Id: Id5910a2c3ff087fe74c9ea27e78ea2f40d57a682
 2025-11-29 12:20:57 +01:00
Ricardo Wurmus e7ab2cc4bf gnu: r-vsn: Update to 3.78.0. 
* gnu/packages/bioconductor.scm (r-vsn): Update to 3.78.0.

Change-Id: Ib2267b3d2ae8c1bb5c261b3b053794d104b1bfd4
 2025-11-29 12:20:57 +01:00
Ricardo Wurmus 6a7e94e75e gnu: r-variantannotation: Update to 1.56.0. 
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.56.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-curl and r-seqinfo.

Change-Id: I3f4faaa0391c82757b6bca018069f8c9ffebb016
 2025-11-29 12:20:57 +01:00
Ricardo Wurmus 0cd32ffe14 gnu: r-tximport: Update to 1.38.1. 
* gnu/packages/bioconductor.scm (r-tximport): Update to 1.38.1.

Change-Id: I9cefc84eef7a72fcd3727df3333818c2b8963b55
 2025-11-29 12:20:57 +01:00
Ricardo Wurmus 340c52678f gnu: r-txdbmaker: Update to 1.6.0. 
* gnu/packages/bioconductor.scm (r-txdbmaker): Update to 1.6.0.
[propagated-inputs]: Add r-seqinfo.
[native-inputs]: Add r-genomeinfodbdata.

Change-Id: If4a6489cd6b23429d7351dd7e2c3687b757a174c
 2025-11-29 12:20:57 +01:00
Ricardo Wurmus 69167a3a26 gnu: r-topgo: Update to 2.62.0. 
* gnu/packages/bioconductor.scm (r-topgo): Update to 2.62.0.

Change-Id: I1542853101b87938082ce30a1528425d5bea518a
 2025-11-29 12:20:57 +01:00
Ricardo Wurmus e4ace9a1ee gnu: r-systempiper: Update to 2.16.0. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.16.0.

Change-Id: I6206dffa1380e6428935add6e2d652bf05461ede
 2025-11-29 12:20:56 +01:00
Ricardo Wurmus f0758c60cb gnu: r-sva: Update to 3.58.0. 
* gnu/packages/bioconductor.scm (r-sva): Update to 3.58.0.

Change-Id: I7b6642bb8205ec375408015c75069e9de529dfe2
 2025-11-29 12:20:56 +01:00
Ricardo Wurmus 9f4377fe4e gnu: r-survcomp: Update to 1.60.0. 
* gnu/packages/bioconductor.scm (r-survcomp): Update to 1.60.0.

Change-Id: Ibfd81f3337ac5b101852a789ee0f8cd20924c098
 2025-11-29 12:20:56 +01:00
Ricardo Wurmus ebc35e47e9 gnu: r-summarizedexperiment: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-summarizedexperiment): Update to 1.40.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I76ba49cee97aa7f45577c9cca0972d610d218c20
 2025-11-29 12:20:56 +01:00
Ricardo Wurmus d2b9cf3d56 gnu: r-structuralvariantannotation: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.26.0.

Change-Id: Ifc10624d9a05d2914bf7b06f38bc50726a68b448
 2025-11-29 12:20:56 +01:00
Ricardo Wurmus e4b376d81c gnu: r-structstrings: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-structstrings): Update to 1.26.0.

Change-Id: I4cc8a21c216ae5e13821f598b176b8c1026f018d
 2025-11-29 12:20:56 +01:00
Ricardo Wurmus bbda45f3f9 gnu: r-stringdb: Update to 2.22.0. 
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.22.0.

Change-Id: I9e87979b2505c70f1ec6685ccebe7966e447616b
 2025-11-29 12:20:56 +01:00
Ricardo Wurmus 7961223126 gnu: r-stager: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-stager): Update to 1.32.0.

Change-Id: I1d965311dd11e9da43e0869092e2ba07edef3c6c
 2025-11-29 12:20:56 +01:00
Ricardo Wurmus 855bda6b66 gnu: r-spectra: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-spectra): Update to 1.20.0.

Change-Id: I51ad3d2fab0887387e2b4a3af174e4914d1a186f
 2025-11-29 12:20:56 +01:00
Ricardo Wurmus c5f3b0ed15 gnu: r-slingshot: Update to 2.18.0. 
* gnu/packages/bioconductor.scm (r-slingshot): Update to 2.18.0.

Change-Id: I857b77e85f9d545e385d672ce14c6c06ae0efdb3
 2025-11-29 12:20:55 +01:00
Ricardo Wurmus 5dc9d6ac36 gnu: r-scds: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-scds): Update to 1.26.0.

Change-Id: I2ed568c57fbc73fd4730ddf7d1df8a01a80016cb
 2025-11-29 12:20:55 +01:00
Ricardo Wurmus c461566734 gnu: r-trnadbimport: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-trnadbimport): Update to 1.28.0.

Change-Id: I527fcf301ac14e3688cd63d3c489477c4c02d75b
 2025-11-29 12:20:55 +01:00
Ricardo Wurmus 82787ef390 gnu: r-trna: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-trna): Update to 1.28.0.

Change-Id: I831c3b1ad148027ab5c42ef1b1995e5553d5127e
 2025-11-29 12:20:55 +01:00
Ricardo Wurmus df5e2e61f5 gnu: r-trajectoryutils: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-trajectoryutils): Update to 1.18.0.

Change-Id: Ie20767399142558cb2ba0bd002a7289524fa6a7f
 2025-11-29 12:20:55 +01:00
Ricardo Wurmus e0fd2113ae gnu: r-trackviewer: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.46.0.
[propagated-inputs]: Add r-seqinfo.

Change-Id: Ia745049a0c98b9b25a5220d77ffeea5165e8eb73
 2025-11-29 12:20:55 +01:00
Ricardo Wurmus 159982c45b gnu: r-toast: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-toast): Update to 1.24.0.

Change-Id: Id8f400c267920fe4b584d0edbeba6a57bf74793c
 2025-11-29 12:20:55 +01:00
Ricardo Wurmus 63e633a419 gnu: r-tkwidgets: Update to 1.88.0. 
* gnu/packages/bioconductor.scm (r-tkwidgets): Update to 1.88.0.

Change-Id: I733c0193cb13f1cf95b8125e006f95ea5106f4e6
 2025-11-29 12:20:55 +01:00
Ricardo Wurmus f3c28f8165 gnu: r-tcgautils: Update to 1.29.5. 
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.29.5.
[propagated-inputs]: Add r-seqinfo.

Change-Id: Icccc0ed6ba5fef648d9c59f69cc1a322dd3b315c
 2025-11-29 12:20:55 +01:00
Ricardo Wurmus 0fddafde4d gnu: r-singscore: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-singscore): Update to 1.30.0.

Change-Id: Ieb6fbc2c68cae7a884a7f40b00c7f03e0963a0a3
 2025-11-29 12:20:54 +01:00
Ricardo Wurmus 46dfa55cea gnu: r-simplifyenrichment: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 2.4.0.

Change-Id: I79a0d9345a759a2252d188e5bf7154fe790359ec
 2025-11-29 12:20:54 +01:00
Ricardo Wurmus 12cc15c883 gnu: r-simona: Update to 1.8.0. 
* gnu/packages/bioconductor.scm (r-simona): Update to 1.8.0.
[propagated-inputs]: Add r-fastmatch.

Change-Id: Ie9395e1ecad38319055bc6671b219a1c605a55fe
 2025-11-29 12:20:54 +01:00
Ricardo Wurmus 5649119263 gnu: r-sictools: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-sictools): Update to 1.40.0.

Change-Id: I6cdd4d268644cb346e27b002f713fe6b0300faeb
 2025-11-29 12:20:54 +01:00
Ricardo Wurmus 77b8e1a182 gnu: r-shortread: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-shortread): Update to 1.68.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I919edcee8379c9eae5af0e5f777fdbf6834b0ca4
 2025-11-29 12:20:54 +01:00
Ricardo Wurmus 510761a0e4 gnu: r-shinymethyl: Update to 1.46.0. 
* gnu/packages/bioconductor.scm (r-shinymethyl): Update to 1.46.0.

Change-Id: I04cceb4dd247f10c52fc4146796e11c9ec3dde5c
 2025-11-29 12:20:54 +01:00
Ricardo Wurmus a386b4e5b7 gnu: r-sesame: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-sesame): Update to 1.28.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: I96272f76d6493619e9898e080168204d906d9875
 2025-11-29 12:20:54 +01:00
Ricardo Wurmus 44b8a84a6e gnu: r-seqpattern: Update to 1.42.0. 
* gnu/packages/bioconductor.scm (r-seqpattern): Update to 1.42.0.

Change-Id: I818f1c37ba4ea7b0b0c0f53570112112b8559516
 2025-11-29 12:20:54 +01:00
Ricardo Wurmus 3229b19856 gnu: r-seqlogo: Update to 1.76.0. 
* gnu/packages/bioconductor.scm (r-seqlogo): Update to 1.76.0.

Change-Id: Ic657d7504bf4dee96454d6430425c7d3e2c5f445
 2025-11-29 12:20:54 +01:00
Ricardo Wurmus 6ef205c3b9 gnu: r-seqarray: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-seqarray): Update to 1.50.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: Iccadd3d2d6cdbe6d2ea609f8bcb939459384495f
 2025-11-29 12:20:53 +01:00
Ricardo Wurmus 1c47451163 gnu: r-scry: Update to 1.22.0. 
* gnu/packages/bioconductor.scm (r-scry): Update to 1.22.0.

Change-Id: I698b52eaec4d4316479c9cdeb934fab8b82cd44e
 2025-11-29 12:20:53 +01:00
Ricardo Wurmus ecfad3935c gnu: r-scrnaseq: Update to 2.24.0. 
* gnu/packages/bioconductor.scm (r-scrnaseq): Update to 2.24.0.

Change-Id: Ibabff2912904921147d13e8f43533df57ddb391a
 2025-11-29 12:20:53 +01:00
Ricardo Wurmus c066175fd6 gnu: r-screpertoire: Update to 2.5.8. 
* gnu/packages/bioconductor.scm (r-screpertoire): Update to 2.5.8.
[propagated-inputs]: Remove r-assertthat, r-cubature, r-plyr, r-reshape2, r-stringdist,
r-stringr, r-truncdist, and r-vgam; add r-immapex and r-matrix.
[native-inputs]: Remove r-devtools, r-seurat, r-vdiffr, and r-withr.
[arguments]: Adjust phase 'delete-bad-tests.

Change-Id: Ic8e9aaacf3d397e881aab2b73585df098567b3f5
 2025-11-29 12:20:53 +01:00
Ricardo Wurmus d88c8d9148 gnu: r-scmap: Update to 1.32.0. 
* gnu/packages/bioconductor.scm (r-scmap): Update to 1.32.0.

Change-Id: Ia30d0f8feb957ede9983318645923f4e750eafb2
 2025-11-29 12:20:53 +01:00
Ricardo Wurmus eb8cbfa30e gnu: r-scdblfinder: Update to 1.24.0. 
* gnu/packages/bioconductor.scm (r-scdblfinder): Update to 1.24.0.

Change-Id: I75cc782ada85d41af4c81fd8765c04df95a409a4
 2025-11-29 12:20:53 +01:00
Ricardo Wurmus 823dab4d56 gnu: r-scannotatr: Update to 1.16.0. 
* gnu/packages/bioconductor.scm (r-scannotatr): Update to 1.16.0.

Change-Id: I0ff4f16d5f244ec2c293bd1e119d892acdd853c8
 2025-11-29 12:20:53 +01:00
Ricardo Wurmus 3c6a701fd9 gnu: r-saturn: Update to 1.18.0. 
* gnu/packages/bioconductor.scm (r-saturn): Update to 1.18.0.

Change-Id: I644b81ab0ed8c9e13df574f2f06f5264bbe4aca4
 2025-11-29 12:20:53 +01:00
Ricardo Wurmus 114d9f1ddc gnu: r-rtracklayer: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.70.0.
[inputs]: Remove openssl; add curl.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.
[native-inputs]: Add r-genomeinfodb.

Change-Id: I578039c89850fe1990355f12a0d560a11fce3f8d
 2025-11-29 12:20:52 +01:00
Ricardo Wurmus 8da0f275ae gnu: r-rtcgatoolbox: Update to 2.40.0. 
* gnu/packages/bioconductor.scm (r-rtcgatoolbox): Update to 2.40.0.
[propagated-inputs]: Remove r-genomeinfodb; add r-seqinfo.

Change-Id: Ia537cbd79dd519b860fc9a7488d2c5a4825e96fb
 2025-11-29 12:20:52 +01:00
Ricardo Wurmus 43d517933b gnu: r-rtcga: Update to 1.40.0. 
* gnu/packages/bioconductor.scm (r-rtcga): Update to 1.40.0.

Change-Id: Ie35dacf403a4ee7f342e74be64941aeffaf34cf4
 2025-11-29 12:20:52 +01:00